Query 016714
Match_columns 384
No_of_seqs 308 out of 1925
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 2.1E-60 7.1E-65 462.8 32.7 380 1-381 1-393 (529)
2 4b8j_A Importin subunit alpha- 100.0 2.3E-53 7.7E-58 414.0 32.7 370 1-372 3-372 (528)
3 1wa5_B Importin alpha subunit; 100.0 4.5E-49 1.6E-53 383.8 27.6 364 7-372 12-384 (530)
4 3ul1_B Importin subunit alpha- 100.0 6.8E-47 2.3E-51 365.8 32.5 350 29-381 14-374 (510)
5 3ul1_B Importin subunit alpha- 100.0 1.2E-37 4.2E-42 301.1 28.3 305 73-381 99-417 (510)
6 3tpo_A Importin subunit alpha- 100.0 2.8E-37 9.7E-42 300.1 30.2 305 73-381 118-436 (529)
7 2jdq_A Importin alpha-1 subuni 100.0 3.1E-35 1.1E-39 280.3 34.1 297 75-372 21-319 (450)
8 3now_A UNC-45 protein, SD10334 100.0 2.1E-36 7.3E-41 299.5 19.9 301 75-381 378-724 (810)
9 3now_A UNC-45 protein, SD10334 100.0 7.5E-35 2.5E-39 288.6 26.2 296 73-372 420-751 (810)
10 3nmz_A APC variant protein; pr 100.0 3.2E-35 1.1E-39 276.3 21.6 303 71-380 29-394 (458)
11 3nmw_A APC variant protein; AR 100.0 1.7E-35 5.8E-40 270.5 18.7 275 88-365 46-341 (354)
12 3nmz_A APC variant protein; pr 100.0 1.5E-34 5.3E-39 271.7 24.5 306 72-381 68-437 (458)
13 4b8j_A Importin subunit alpha- 100.0 7.8E-34 2.7E-38 276.3 30.0 303 74-381 117-430 (528)
14 1xm9_A Plakophilin 1; armadill 100.0 7E-35 2.4E-39 277.7 22.0 297 75-379 3-385 (457)
15 2jdq_A Importin alpha-1 subuni 100.0 1.4E-33 4.7E-38 268.8 29.5 302 74-380 64-376 (450)
16 1wa5_B Importin alpha subunit; 100.0 1.8E-33 6.1E-38 273.8 30.5 304 73-380 129-443 (530)
17 3l6x_A Catenin delta-1; cateni 100.0 3E-32 1E-36 261.7 25.7 293 74-372 48-446 (584)
18 1xm9_A Plakophilin 1; armadill 100.0 2.2E-32 7.6E-37 260.5 22.4 280 73-359 43-450 (457)
19 3l6x_A Catenin delta-1; cateni 100.0 5.8E-31 2E-35 252.7 28.6 295 73-372 89-489 (584)
20 4hxt_A De novo protein OR329; 100.0 5.1E-31 1.7E-35 231.3 25.0 240 117-359 2-242 (252)
21 4db8_A Armadillo-repeat protei 100.0 7.7E-31 2.6E-35 230.5 21.1 239 117-358 12-251 (252)
22 4db8_A Armadillo-repeat protei 100.0 2.4E-30 8.1E-35 227.4 20.2 239 74-315 12-251 (252)
23 4hxt_A De novo protein OR329; 100.0 9E-30 3.1E-34 223.3 22.8 242 74-318 2-244 (252)
24 1jdh_A Beta-catenin; beta-cate 100.0 3.6E-29 1.2E-33 243.2 28.4 293 73-372 100-398 (529)
25 3nmw_A APC variant protein; AR 100.0 1.3E-29 4.5E-34 231.6 21.7 246 132-380 46-320 (354)
26 2z6h_A Catenin beta-1, beta-ca 100.0 7.5E-29 2.6E-33 246.6 28.7 293 73-372 97-395 (644)
27 2z6g_A B-catenin; FULL-length, 100.0 2.5E-27 8.4E-32 239.6 28.5 293 73-372 233-531 (780)
28 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-27 5.9E-32 231.4 23.0 293 74-372 59-356 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 2.3E-26 7.9E-31 228.7 23.4 293 74-372 56-353 (644)
30 4db6_A Armadillo repeat protei 99.9 6.2E-26 2.1E-30 193.5 20.2 200 114-315 9-209 (210)
31 2z6g_A B-catenin; FULL-length, 99.9 6.2E-26 2.1E-30 229.3 22.5 293 74-372 192-489 (780)
32 4db6_A Armadillo repeat protei 99.9 2E-25 6.9E-30 190.3 20.3 199 158-358 10-209 (210)
33 1xqr_A HSPBP1 protein; armadil 99.9 4.1E-25 1.4E-29 196.6 21.0 226 132-358 54-287 (296)
34 1xqr_A HSPBP1 protein; armadil 99.9 7.4E-24 2.5E-28 188.5 19.6 236 75-314 29-286 (296)
35 3tt9_A Plakophilin-2; cell adh 99.9 4.6E-24 1.6E-28 181.9 15.0 197 118-316 9-230 (233)
36 3opb_A SWI5-dependent HO expre 99.9 1.1E-22 3.9E-27 198.1 21.7 291 75-370 335-695 (778)
37 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-23 5.2E-28 178.8 13.2 197 74-274 8-230 (233)
38 3opb_A SWI5-dependent HO expre 99.9 1.8E-21 6.1E-26 189.7 18.7 280 74-358 376-728 (778)
39 3grl_A General vesicular trans 99.7 2.9E-15 1E-19 142.6 25.4 296 74-370 60-406 (651)
40 3grl_A General vesicular trans 99.7 3.2E-15 1.1E-19 142.3 23.6 292 74-371 21-355 (651)
41 1oyz_A Hypothetical protein YI 99.7 3.9E-15 1.3E-19 132.2 21.0 227 74-358 23-250 (280)
42 1oyz_A Hypothetical protein YI 99.6 2.4E-14 8.3E-19 127.1 19.9 201 115-358 21-221 (280)
43 4fdd_A Transportin-1; heat rep 99.6 4.2E-15 1.4E-19 152.4 14.1 274 75-358 175-471 (852)
44 3ltm_A Alpha-REP4; protein eng 99.6 7.5E-14 2.6E-18 118.5 18.7 188 116-360 18-205 (211)
45 3ltj_A Alpharep-4; protein eng 99.6 9.6E-14 3.3E-18 116.9 17.2 185 117-358 14-198 (201)
46 3ltm_A Alpha-REP4; protein eng 99.6 2E-13 7E-18 115.8 18.1 188 74-318 19-206 (211)
47 4fdd_A Transportin-1; heat rep 99.6 2.7E-14 9.2E-19 146.4 15.0 273 75-358 129-429 (852)
48 1ibr_B P95, importin beta-1 su 99.5 3.3E-13 1.1E-17 128.2 18.9 276 74-358 128-437 (462)
49 3ltj_A Alpharep-4; protein eng 99.5 5.5E-13 1.9E-17 112.2 17.8 184 74-314 14-197 (201)
50 2vgl_B AP-2 complex subunit be 99.5 1.6E-13 5.4E-18 134.7 16.5 274 74-367 86-391 (591)
51 1b3u_A Protein (protein phosph 99.5 2.1E-12 7.1E-17 126.5 17.9 267 75-358 282-548 (588)
52 1b3u_A Protein (protein phosph 99.4 5.5E-12 1.9E-16 123.5 19.1 265 75-358 88-353 (588)
53 2vgl_B AP-2 complex subunit be 99.4 1.6E-11 5.5E-16 120.4 22.2 259 74-358 49-311 (591)
54 1w63_A Adapter-related protein 99.4 6.3E-11 2.1E-15 116.7 23.4 257 75-358 71-379 (618)
55 4gmo_A Putative uncharacterize 99.4 8.5E-12 2.9E-16 124.2 17.3 215 117-357 35-257 (684)
56 1qgr_A Protein (importin beta 99.4 2.3E-11 8E-16 124.8 19.4 274 76-358 174-479 (876)
57 1qgr_A Protein (importin beta 99.3 4.6E-11 1.6E-15 122.6 19.5 277 75-359 129-438 (876)
58 2bpt_A Importin beta-1 subunit 99.3 2.1E-11 7.3E-16 124.9 14.7 274 76-358 371-668 (861)
59 2bpt_A Importin beta-1 subunit 99.3 4.8E-11 1.6E-15 122.3 17.1 272 76-358 181-482 (861)
60 1w63_A Adapter-related protein 99.3 4E-11 1.4E-15 118.1 14.4 255 75-358 108-414 (618)
61 1u6g_C TIP120 protein, CAND1; 99.2 1E-10 3.6E-15 124.4 14.4 271 75-358 7-284 (1230)
62 1ibr_B P95, importin beta-1 su 99.2 6.3E-11 2.1E-15 112.4 11.4 236 76-317 174-439 (462)
63 4gmo_A Putative uncharacterize 99.1 1.4E-10 4.7E-15 115.5 10.0 194 75-272 35-257 (684)
64 2vgl_A Adaptor protein complex 99.1 4.2E-08 1.4E-12 96.4 26.6 267 74-368 74-406 (621)
65 2vgl_A Adaptor protein complex 98.9 3.6E-07 1.2E-11 89.8 24.1 218 117-358 187-433 (621)
66 2db0_A 253AA long hypothetical 98.9 9.4E-07 3.2E-11 70.0 20.9 216 115-358 30-246 (253)
67 2db0_A 253AA long hypothetical 98.9 3.6E-07 1.2E-11 72.4 18.2 190 158-367 30-219 (253)
68 1u6g_C TIP120 protein, CAND1; 98.9 9.9E-09 3.4E-13 109.2 12.6 275 75-358 87-403 (1230)
69 2qk2_A LP04448P; mini spindles 98.9 2.4E-08 8.2E-13 86.2 12.3 185 77-273 18-205 (242)
70 2qk2_A LP04448P; mini spindles 98.8 1.5E-08 5.1E-13 87.6 10.4 186 163-358 18-205 (242)
71 4ady_A RPN2, 26S proteasome re 98.8 7.6E-07 2.6E-11 89.2 23.5 240 75-362 430-680 (963)
72 3b2a_A TON_1937, putative unch 98.8 2.6E-07 8.9E-12 76.3 16.5 187 75-275 34-220 (265)
73 2qk1_A Protein STU2; STU2P, XM 98.7 1.1E-07 3.7E-12 82.3 12.8 190 122-315 21-220 (249)
74 1te4_A Conserved protein MTH18 98.7 1.9E-09 6.6E-14 83.7 1.5 121 116-271 11-131 (131)
75 3tjz_B Coatomer subunit gamma; 98.7 8.2E-07 2.8E-11 80.1 18.8 253 75-366 69-324 (355)
76 3tjz_B Coatomer subunit gamma; 98.7 1.9E-07 6.6E-12 84.2 14.6 243 74-353 104-348 (355)
77 2qk1_A Protein STU2; STU2P, XM 98.7 1.9E-07 6.5E-12 80.8 13.9 199 164-363 20-227 (249)
78 4ady_A RPN2, 26S proteasome re 98.7 7E-07 2.4E-11 89.5 19.5 244 75-367 393-652 (963)
79 3b2a_A TON_1937, putative unch 98.7 6.1E-07 2.1E-11 74.1 14.7 187 117-316 33-219 (265)
80 1te4_A Conserved protein MTH18 98.7 7.3E-09 2.5E-13 80.4 2.3 121 159-313 11-131 (131)
81 1ho8_A Vacuolar ATP synthase s 98.4 6.1E-06 2.1E-10 76.2 15.9 234 121-358 171-476 (480)
82 1ho8_A Vacuolar ATP synthase s 98.4 1.2E-05 4E-10 74.4 15.5 233 79-315 172-476 (480)
83 2iw3_A Elongation factor 3A; a 98.1 0.00072 2.5E-08 68.8 23.9 264 75-357 55-323 (986)
84 3dad_A FH1/FH2 domain-containi 98.1 8.8E-05 3E-09 65.3 15.1 157 76-235 120-289 (339)
85 2iw3_A Elongation factor 3A; a 98.0 0.00013 4.3E-09 74.2 15.1 275 75-370 15-294 (986)
86 3dad_A FH1/FH2 domain-containi 97.9 0.00045 1.5E-08 60.8 14.9 178 119-298 120-317 (339)
87 4ffb_C Protein STU2; tubulin f 97.9 0.0004 1.4E-08 60.8 15.0 192 74-274 10-213 (278)
88 1wa5_C Importin alpha RE-expor 97.7 0.00093 3.2E-08 69.2 17.6 221 85-314 416-669 (960)
89 1wa5_C Importin alpha RE-expor 97.7 0.0012 4.3E-08 68.2 18.4 217 128-358 416-670 (960)
90 2x1g_F Cadmus; transport prote 97.6 0.00073 2.5E-08 70.0 14.0 215 132-358 478-722 (971)
91 3m1i_C Exportin-1; heat repeat 97.5 0.0072 2.5E-07 63.1 19.8 131 222-358 432-569 (1049)
92 1upk_A MO25 protein; transfera 97.3 0.011 3.7E-07 52.1 16.1 212 155-369 73-297 (341)
93 2x1g_F Cadmus; transport prote 97.3 0.0083 2.8E-07 62.1 17.8 169 134-316 437-616 (971)
94 4hat_C Exportin-1; heat repeat 97.3 0.069 2.4E-06 55.3 24.2 271 85-370 206-544 (1023)
95 2x19_B Importin-13; nuclear tr 97.3 0.0042 1.4E-07 64.2 15.3 219 127-358 459-714 (963)
96 2of3_A ZYG-9; multifunctional 97.3 0.0049 1.7E-07 53.0 13.0 175 122-315 51-236 (266)
97 1upk_A MO25 protein; transfera 97.2 0.029 9.8E-07 49.4 17.1 242 112-358 73-332 (341)
98 3oc3_A Helicase MOT1, MOT1; re 97.2 0.00057 2E-08 63.9 6.6 217 74-314 174-403 (800)
99 3ibv_A Exportin-T; karyopherin 97.1 0.0058 2E-07 63.1 13.5 96 256-358 455-566 (980)
100 2x19_B Importin-13; nuclear tr 97.0 0.0081 2.8E-07 62.1 13.9 139 170-317 459-601 (963)
101 4ffb_C Protein STU2; tubulin f 97.0 0.017 5.7E-07 50.4 13.9 190 119-316 12-213 (278)
102 2of3_A ZYG-9; multifunctional 96.9 0.015 5.3E-07 49.9 13.0 179 77-273 49-236 (266)
103 3m1i_C Exportin-1; heat repeat 96.8 0.047 1.6E-06 57.0 17.8 149 163-316 454-619 (1049)
104 4hat_C Exportin-1; heat repeat 96.7 0.0034 1.2E-07 65.0 8.4 142 172-318 465-621 (1023)
105 1lrv_A LRV, leucine-rich repea 96.5 0.0036 1.2E-07 53.3 5.9 66 249-352 175-240 (244)
106 3eg5_B Protein diaphanous homo 96.4 0.21 7.1E-06 45.5 17.5 158 77-236 69-250 (383)
107 2f31_A Diaphanous protein homo 96.4 0.11 3.9E-06 43.7 14.5 139 93-233 20-181 (233)
108 3l9t_A Putative uncharacterize 96.3 0.03 1E-06 46.7 10.1 142 206-370 74-219 (240)
109 3ibv_A Exportin-T; karyopherin 96.2 0.04 1.4E-06 56.9 12.5 221 132-360 457-732 (980)
110 3l9t_A Putative uncharacterize 96.1 0.16 5.5E-06 42.3 13.4 145 118-284 72-218 (240)
111 3gjx_A Exportin-1; transport, 96.1 0.73 2.5E-05 47.8 21.2 100 256-358 491-595 (1073)
112 3ebb_A Phospholipase A2-activa 96.0 0.28 9.5E-06 43.1 15.1 173 119-297 105-287 (304)
113 3oc3_A Helicase MOT1, MOT1; re 95.9 0.055 1.9E-06 51.0 10.5 214 118-357 175-403 (800)
114 3u0r_A Apoptosis inhibitor 5; 95.9 0.21 7.3E-06 46.1 14.3 123 172-314 40-162 (507)
115 2bnx_A Diaphanous protein homo 95.5 0.66 2.3E-05 42.2 16.4 157 78-236 8-188 (386)
116 2fv2_A RCD1 required for cell 95.4 0.95 3.3E-05 38.1 15.4 192 174-368 15-233 (268)
117 3c2g_A SYS-1 protein; beta-cat 95.3 0.21 7.4E-06 44.0 11.6 110 184-295 266-376 (619)
118 2fv2_A RCD1 required for cell 95.2 0.23 7.8E-06 41.8 11.1 141 91-233 73-225 (268)
119 3c2g_A SYS-1 protein; beta-cat 95.1 0.083 2.8E-06 46.5 8.3 171 141-313 265-471 (619)
120 3ebb_A Phospholipase A2-activa 95.0 0.21 7E-06 43.9 11.0 110 121-233 151-264 (304)
121 3u0r_A Apoptosis inhibitor 5; 94.9 0.72 2.4E-05 42.7 14.2 118 132-269 42-159 (507)
122 1lrv_A LRV, leucine-rich repea 94.3 0.033 1.1E-06 47.3 4.0 159 78-311 78-242 (244)
123 3gjx_A Exportin-1; transport, 94.1 0.97 3.3E-05 46.9 15.1 220 73-316 27-276 (1073)
124 1lsh_A Lipovitellin (LV-1N, LV 93.7 1.9 6.4E-05 44.9 16.5 166 161-359 392-577 (1056)
125 2p8q_B Snurportin-1; heat repe 93.1 0.074 2.5E-06 30.4 2.7 38 11-50 2-40 (40)
126 2f31_A Diaphanous protein homo 91.9 4.9 0.00017 33.5 18.0 168 149-348 33-218 (233)
127 3a6p_A Exportin-5; exportin-5, 91.5 16 0.00054 38.7 22.6 258 76-357 13-330 (1204)
128 1lsh_A Lipovitellin (LV-1N, LV 91.4 8 0.00027 40.2 17.4 133 204-355 393-540 (1056)
129 3eg5_B Protein diaphanous homo 90.8 9.1 0.00031 34.6 19.1 157 149-336 99-273 (383)
130 3o2t_A Symplekin; heat repeat, 90.1 10 0.00036 34.2 19.0 89 89-188 40-128 (386)
131 3gs3_A Symplekin, LD45768P; he 89.4 9.1 0.00031 32.4 21.1 100 78-188 19-118 (257)
132 2npp_B PP2A, B subunit, serine 89.2 7.5 0.00026 35.8 13.3 229 76-322 164-406 (449)
133 3fga_B Serine/threonine-protei 88.5 6.9 0.00023 35.5 12.3 224 76-318 131-369 (403)
134 2bnx_A Diaphanous protein homo 86.8 18 0.00061 32.7 17.6 151 150-302 38-219 (386)
135 3a6p_A Exportin-5; exportin-5, 85.3 15 0.00053 38.7 14.9 202 132-358 27-276 (1204)
136 3qml_C Protein SLS1, nucleotid 81.8 17 0.00058 31.5 10.9 146 76-231 24-188 (315)
137 2npp_B PP2A, B subunit, serine 81.1 28 0.00094 32.1 12.9 192 153-352 155-349 (449)
138 1x5b_A Signal transducing adap 79.5 2.5 8.5E-05 33.2 4.8 74 74-147 52-125 (163)
139 3qml_C Protein SLS1, nucleotid 79.2 18 0.00062 31.3 10.3 133 134-272 44-188 (315)
140 2b6c_A Hypothetical protein EF 79.0 22 0.00077 29.1 10.8 108 246-369 91-199 (220)
141 3ldz_A STAM-1, signal transduc 78.0 2 6.9E-05 32.7 3.7 71 74-146 42-113 (140)
142 2jak_A Serine/threonine-protei 77.7 28 0.00094 31.4 11.5 192 154-353 168-362 (392)
143 1mhq_A ADP-ribosylation factor 77.1 3.5 0.00012 31.7 4.9 74 74-147 38-116 (148)
144 3gs3_A Symplekin, LD45768P; he 77.0 33 0.0011 29.0 14.3 175 75-281 54-251 (257)
145 3g2s_A C-terminal fragment of 75.6 4.2 0.00014 31.3 5.0 73 74-147 48-126 (149)
146 3gae_A Protein DOA1; UFD3, CDC 74.6 12 0.00043 31.5 8.2 105 171-275 101-219 (253)
147 3fga_B Serine/threonine-protei 73.0 54 0.0019 29.7 14.2 45 154-198 123-167 (403)
148 3zyq_A Hepatocyte growth facto 69.9 3.2 0.00011 34.5 3.3 74 74-147 45-118 (226)
149 1juq_A ADP-ribosylation factor 68.6 5.5 0.00019 31.4 4.3 74 74-147 50-128 (171)
150 1vsy_5 Proteasome activator BL 67.3 22 0.00075 36.6 9.4 188 161-358 134-365 (997)
151 3pst_A Protein DOA1; protein d 67.3 27 0.00093 31.8 9.0 131 135-276 243-392 (425)
152 3vld_A DNA mismatch repair pro 66.9 74 0.0025 29.5 11.7 143 76-233 75-226 (500)
153 1x5b_A Signal transducing adap 63.9 11 0.00038 29.4 5.1 72 161-232 53-125 (163)
154 1dvp_A HRS, hepatocyte growth 62.4 5.2 0.00018 33.1 3.2 73 74-146 42-114 (220)
155 3o2t_A Symplekin; heat repeat, 62.2 89 0.0031 28.1 12.5 112 240-357 59-182 (386)
156 3l3f_X Protein DOA1, DOA1/UFD3 61.6 30 0.001 30.9 8.0 131 135-276 180-329 (362)
157 2jak_A Serine/threonine-protei 61.4 13 0.00045 33.5 5.7 72 76-149 176-247 (392)
158 3gjx_B Snurportin-1; transport 58.7 2.3 7.9E-05 37.5 0.4 43 8-52 28-71 (365)
159 3ldz_A STAM-1, signal transduc 56.7 14 0.00049 27.9 4.5 95 253-357 18-113 (140)
160 1vsy_5 Proteasome activator BL 54.8 27 0.00091 36.0 7.4 62 118-185 134-199 (997)
161 3gae_A Protein DOA1; UFD3, CDC 53.8 14 0.00049 31.1 4.5 132 91-234 71-219 (253)
162 1juq_A ADP-ribosylation factor 53.6 52 0.0018 25.7 7.5 112 254-374 27-150 (171)
163 3zyq_A Hepatocyte growth facto 52.8 16 0.00054 30.2 4.6 73 161-233 46-119 (226)
164 1dvp_A HRS, hepatocyte growth 52.5 17 0.00057 29.9 4.6 71 161-231 43-114 (220)
165 1mhq_A ADP-ribosylation factor 51.1 30 0.001 26.4 5.6 72 243-314 37-115 (148)
166 3pst_A Protein DOA1; protein d 50.2 17 0.00058 33.2 4.6 105 85-194 273-394 (425)
167 3jxy_A Alkylpurine DNA glycosy 49.2 23 0.0008 29.3 5.1 77 287-371 132-208 (232)
168 1elk_A Target of MYB1; superhe 48.2 22 0.00075 27.5 4.4 74 74-147 53-130 (157)
169 3g2s_A C-terminal fragment of 47.3 53 0.0018 25.0 6.4 95 254-357 25-125 (149)
170 4atg_A TAF6; transcription, TF 47.0 1.1E+02 0.0037 24.6 8.4 111 161-272 41-161 (196)
171 1a92_A Delta antigen; leucine 45.3 20 0.00069 21.1 2.8 19 24-42 11-29 (50)
172 3l3f_X Protein DOA1, DOA1/UFD3 43.8 17 0.00058 32.5 3.5 103 85-193 210-330 (362)
173 2xpp_A IWS1, ECU08_0440; trans 42.0 79 0.0027 23.9 6.5 74 279-356 54-134 (145)
174 1vsy_4 Proteasome activator BL 40.8 1.4E+02 0.0048 29.9 9.9 120 151-272 331-454 (799)
175 1t06_A Hypothetical protein; s 38.4 67 0.0023 26.5 6.3 76 288-369 110-191 (235)
176 3s4w_B Protein FACD2, fanconi 33.8 4.6E+02 0.016 27.9 14.8 145 208-358 405-553 (1323)
177 1w9c_A CRM1 protein, exportin 29.6 2.8E+02 0.0096 24.1 11.6 134 174-314 43-195 (321)
178 4atg_A TAF6; transcription, TF 28.5 2.3E+02 0.0077 22.7 12.3 130 203-340 41-180 (196)
179 1elk_A Target of MYB1; superhe 25.8 79 0.0027 24.2 4.3 71 161-231 54-129 (157)
180 2xpp_A IWS1, ECU08_0440; trans 23.1 2.4E+02 0.0083 21.2 9.6 75 108-186 52-133 (145)
181 1sz9_A PCF11 protein; RNA poly 22.5 1.7E+02 0.006 21.9 5.6 87 256-353 23-109 (144)
182 1vsy_4 Proteasome activator BL 20.6 6.4E+02 0.022 25.1 11.0 106 119-232 341-455 (799)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.1e-60 Score=462.82 Aligned_cols=380 Identities=48% Similarity=0.777 Sum_probs=298.5
Q ss_pred CCCCCC-CchhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHH
Q 016714 1 MSLRPS-TRAEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPS 78 (384)
Q Consensus 1 ~~~~~~-~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (384)
||.+++ +.+++|+++||+ |+|++|+||||+++.+||||+||||+|+|||+.....++...+..............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 888886 567899999998 999999999999999999999999999999987554443322222211111122247899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714 79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE 158 (384)
Q Consensus 79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 158 (384)
+++.++++|++.|+.|+..++++++.+++++++.+++.|++|.|+++|..++++.++.+|+|+|+||+.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999987666999999999999999999999999999
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc----hhHHHHHHHHHHhhhhcCC
Q 016714 159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~L~~~~ 234 (384)
.|++|.|+.+|.++++.++++|+|+|+||+.+++.+|+.+.+.|++++|+.+|.... ...+++.++|+|++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995432 2457899999999999987
Q ss_pred -CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 235 -PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 235 -~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
+........+++|.|+.+|.+++++++.+++|+|++++.+..+....+.+.|+++.|+.+|.++++.++.+++++|+||
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5566677789999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
+++++..+..+++.|+++.|..++.++ ++.++++|+|+|+||+++++++++.+++.|+ ++.++++++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999999999999999999999998 8999999999999999999999999999998 466666543
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.3e-53 Score=414.02 Aligned_cols=370 Identities=77% Similarity=1.183 Sum_probs=291.1
Q ss_pred CCCCCCCchhHHhccCCCCCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHH
Q 016714 1 MSLRPSTRAEVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMV 80 (384)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv 80 (384)
||+.++.++++|+++||++++++|+|+||+++.++|||+||+|+++|||+.....++.++. . ...........+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~~l~~lv 80 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA-S-AATGVDKKLESLPAMI 80 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC------------------------CHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc-c-cccchhhhHHHHHHHH
Confidence 7788888889999999999999999999999999999999999999999974322221111 0 0111112235799999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 016714 81 QGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 160 (384)
Q Consensus 81 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g 160 (384)
..|.++++..+..|++.|+++++....++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 160 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 99999999999999999999998875588999999999999999999876589999999999999999999999999999
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (384)
++|.|+.+|.++++.+++.|+|+|+||+.+.+.+++.+...|++++|+.++..+.+..++..++|+|++|+...+.....
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 99999999999999999999999999999988899999999999999999976778999999999999999987777777
Q ss_pred hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
...+++|.|+.+|.+++++++..++|+|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence 78999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
.+.+++.|+++.|..+|.++.++.++++|+|+|+|++.+++++++.+++.|+
T Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372 (528)
T ss_dssp HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence 9999999999999999987657899999999999999999999999999888
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.5e-49 Score=383.77 Aligned_cols=364 Identities=53% Similarity=0.811 Sum_probs=312.1
Q ss_pred CchhHHhccCCC-C-CCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhcccc---CCCccccc-c-hhhhhHH-hhhcCHHH
Q 016714 7 TRAEVRKKGYKT-G-VDADEARRRREDNLVEIRKNKREDNLLKKRREGLL---LQPQQQGL-D-ASQNAIE-KKLESIPS 78 (384)
Q Consensus 7 ~~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~---~~~~~~~~-~-~~~~~~~-~~~~~l~~ 78 (384)
.+++.|++.||+ | ++++|+|+||++..++|||+||++++.|||+.... .+...++. . ....... .....++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (530)
T 1wa5_B 12 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 91 (530)
T ss_dssp CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred CchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHH
Confidence 456789999999 8 99999999999999999999999999999997542 11100000 0 0000000 12257999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714 79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE 158 (384)
Q Consensus 79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 158 (384)
++..|+++++..+..|++.|+++++....+++..+++.|++|.|+.+|.+++++.++..|+|+|++++.++++.+..+++
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~ 171 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 171 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999887656788899999999999999998733999999999999999998899999999
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCC
Q 016714 159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPT 237 (384)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~ 237 (384)
.|+++.|+.+|.++++.+++.|+|+|+|++.+.+..++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +..
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999888999999999999999999 5578899999999999999987 666
Q ss_pred ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (384)
......+++|.|+.+|.++++.++..++|+|++|+...++....+++.|+++.|+.+|.++++.++..|+++|+|++.++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 67777999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 318 DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 318 ~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
+...+.+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++++++.+++.|+
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 99989999999999999999999 8999999999999999999999999998888
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.8e-47 Score=365.82 Aligned_cols=350 Identities=48% Similarity=0.771 Sum_probs=286.8
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC
Q 016714 29 REDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP 108 (384)
Q Consensus 29 r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~ 108 (384)
|....++.|+++++......++....+++.... +.... ....-..++.+++.++|+|++.|+.|+..+|+++|.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p 91 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMA-DIGSN-QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91 (510)
T ss_dssp -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchh-hhccc-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 455677888888888888777665433332211 11111 1111136899999999999999999999999999999899
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 109 PIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 109 ~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
+++.+++.|+||.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.++++.++++|+|+|+||+
T Consensus 92 pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987666899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHhcCChHHHHHHhcccc----hhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhccCCHhHHHH
Q 016714 189 GDSPSCRDLVLSSGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTD 263 (384)
Q Consensus 189 ~~~~~~~~~i~~~g~i~~L~~~l~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~ 263 (384)
.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.+|.+++++++..
T Consensus 172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~ 251 (510)
T 3ul1_B 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 251 (510)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999995432 2457899999999999987 55666677899999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCch
Q 016714 264 ACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKK 343 (384)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~ 343 (384)
++|+|++|+.+..+....+.+.|+++.|+.+|.+++..++.+++++|+|++++++..+..+++.|+++.|..++.++ ++
T Consensus 252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~ 330 (510)
T 3ul1_B 252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT 330 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SH
T ss_pred HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714 344 SIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
.++++|+|+|+||+++++++++.+++.|+ ++..+++++
T Consensus 331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999998 466666643
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.2e-37 Score=301.06 Aligned_cols=305 Identities=25% Similarity=0.399 Sum_probs=273.5
Q ss_pred hcCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 73 LESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 73 ~~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+.+|.|+++|++ +++.+|..|+|+|.++++++ ++....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 3789999999975 45899999999999999875 777888999999999999999988 99999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWT 226 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 226 (384)
.+..+++.|+++.|+.++.+++ ..+...++|+|+|++.+...........++++.|+.++ .+.+.+++..++|+
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence 9999999999999999998744 45788999999999987655555555667899999999 77888999999999
Q ss_pred HhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHH
Q 016714 227 LSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP 305 (384)
Q Consensus 227 L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~ 305 (384)
|++|+.+.+..... ...+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 99999875332222 23789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCC
Q 016714 306 ALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHED 378 (384)
Q Consensus 306 a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~ 378 (384)
|+|+|+||+.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++.++++.|+ ++...|
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 89999999999999998 79999999999998 677776
Q ss_pred ccc
Q 016714 379 FSL 381 (384)
Q Consensus 379 ~~~ 381 (384)
.++
T Consensus 415 ~~i 417 (510)
T 3ul1_B 415 TKI 417 (510)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.8e-37 Score=300.05 Aligned_cols=305 Identities=25% Similarity=0.395 Sum_probs=273.9
Q ss_pred hcCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 73 LESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 73 ~~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+.+|.|++.|.. +++.+|..|+++|.++++++ +.....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 4779999999974 55899999999999998875 667788999999999999999998 99999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWT 226 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 226 (384)
.+..+++.|+++.|+.+|..++ ..+...++|+|+|++.+...........++++.|+.++ .+.+++++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999998643 46788999999999987655555556677899999999 78888999999999
Q ss_pred HhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHH
Q 016714 227 LSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP 305 (384)
Q Consensus 227 L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~ 305 (384)
|++++.+.+..... ...+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 99999875332222 23789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCC
Q 016714 306 ALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHED 378 (384)
Q Consensus 306 a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~ 378 (384)
|+|+|+||+.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++.++++.|+ ++...|
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 89999999999999997 79999999999998 577776
Q ss_pred ccc
Q 016714 379 FSL 381 (384)
Q Consensus 379 ~~~ 381 (384)
.++
T Consensus 434 ~~i 436 (529)
T 3tpo_A 434 TKI 436 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.1e-35 Score=280.25 Aligned_cols=297 Identities=61% Similarity=0.984 Sum_probs=274.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
.++.+++.++++++.++..|+..|+++++...+++.+.+++. |++|.|+++|.+++++.++..|+|+|++++.++++.+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 479999999999999999999999999875446777888888 9999999999988339999999999999999888889
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+++.|++|.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|.+++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999998888999999999999999995557889999999999999988
Q ss_pred C-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 234 K-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 234 ~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
. +........+++|.|+.++.++|+.++..++|+|++++...++....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 566666668999999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
++.+.+...+.+++.|+++.|..++.++ ++.+++.|+|+|+|++.+++++++.+++.|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~ 319 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANI 319 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999988888899999999999999998 8999999999999999999999999998887
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-36 Score=299.54 Aligned_cols=301 Identities=14% Similarity=0.119 Sum_probs=256.3
Q ss_pred CHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 75 SIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 75 ~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.++.++++|.++ +++++..|++.|..+... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367888899887 889999999999988543 34444555 6799999999999888 89999999999999986531
Q ss_pred -----------------------------h---HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHH
Q 016714 152 -----------------------------H---TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVL 199 (384)
Q Consensus 152 -----------------------------~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~ 199 (384)
. .+.+++.|++|.|+.+|.++++.++++|+|+|+||+++. .+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 2 278899999999999999999999999999999999765 4899999
Q ss_pred hcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCCh--hhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCC
Q 016714 200 SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPF--EQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGP 275 (384)
Q Consensus 200 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~--~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~ 275 (384)
+.|++++|+.+| .+.+...++.++|+|++|+.+. |...+ ....+++|.|+.+|.+++ ...+.+|+|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 5666788999999999999864 22111 123578999999998663 345679999999999998
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
++..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+...+...|.++.|+.++.++ +..++++|+|+|+|
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999997665554442379999999999998 89999999999999
Q ss_pred HhcCCHHHHHHHHh-CCc------cccCCCccc
Q 016714 356 ITAGNRAQIQVHDS-FHL------FVLHEDFSL 381 (384)
Q Consensus 356 l~~~~~~~i~~l~~-~~~------ll~~~~~~~ 381 (384)
++++++.+++.+++ .|. ++.++++++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~v 724 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHH
Confidence 99999999999998 676 677777654
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.5e-35 Score=288.56 Aligned_cols=296 Identities=13% Similarity=0.091 Sum_probs=254.0
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC---------------------------c----HHHHHHcCCHHH
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP---------------------------P----IDEVIKAGVVPR 121 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~---------------------------~----~~~~~~~g~i~~ 121 (384)
.+.+|.|+++++++++.+++.|+++|.|+..+.... . ++.+++.|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 467999999999999999999999999998753111 0 267889999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-Cchh-hHHH
Q 016714 122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCR-DLVL 199 (384)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~-~~i~ 199 (384)
|+.+|++++ +.++..|+|+|+||+. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+. +... ....
T Consensus 500 LV~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 500 LCALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 999999988 9999999999999996 5889999999999999999999999999999999999998643 2210 0001
Q ss_pred hcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH
Q 016714 200 SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK 278 (384)
Q Consensus 200 ~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~ 278 (384)
..|++++|+.+|..+.+......++|+|+||+...+......+ .+++|.|+.+|.++++.++..|+++|+||+.+++..
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 2468999999995333444556899999999998533222333 789999999999999999999999999999876654
Q ss_pred HHHHHH-cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 279 IQAVIE-AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID-NGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 279 ~~~~~~-~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
. .+.+ .|.++.|+.++.+++..++..|+|+|+|++.+++.+.+.+++ .|+++.|+.++.++ +..+++.|+|+|+|+
T Consensus 658 ~-~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL 735 (810)
T 3now_A 658 K-MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNM 735 (810)
T ss_dssp H-HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred H-HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 4 4454 799999999999999999999999999999988888899998 89999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHhCCc
Q 016714 357 TAGNRAQIQVHDSFHL 372 (384)
Q Consensus 357 ~~~~~~~i~~l~~~~~ 372 (384)
+.+++++.+++.+.|+
T Consensus 736 ~~~s~e~~~~l~e~G~ 751 (810)
T 3now_A 736 INAGEEIAKKLFETDI 751 (810)
T ss_dssp HTTCHHHHHHHHTSTH
T ss_pred HhCCHHHHHHHHHCCC
Confidence 9999999999999998
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=276.30 Aligned_cols=303 Identities=18% Similarity=0.180 Sum_probs=234.2
Q ss_pred hhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCC-----------hHHHHHH
Q 016714 71 KKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPI-DEVIKAGVVPRFVEFLGRHDM-----------PQLQFEA 138 (384)
Q Consensus 71 ~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~-----------~~~~~~a 138 (384)
.+++.++.++..+.++++.. .++++++.+.++++ ..+++.|++|.|+++|...+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 45577899999999888773 33344443334555 778999999999999997432 7999999
Q ss_pred HHHHHHHhcCCchhHHHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHhhhCCCCch
Q 016714 139 AWALTNVASGTSEHTRVVIEHGAV----------PMFVQLLSSGS--DD-----VRE-------QAVWALGNVAGDSPSC 194 (384)
Q Consensus 139 ~~~L~nl~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~ 194 (384)
+|+|+||+.++++.+....+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.+
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999999988888 67777777642 22 444 999999999776 679
Q ss_pred hhHHHhcCChHHHHHHhcc----------cchhHHHHHHHHHHhhhhcCCCCCChhh--hhchHHHHHHhhccCCHhHHH
Q 016714 195 RDLVLSSGALMPLLAQLNE----------HSKLSMLRNATWTLSNFCRGKPPTPFEQ--VKPALPILQRLIHLNDEEVLT 262 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~i~~ 262 (384)
|+.+.+.|++++|+.+|.. +.++.++++++|+|.|||.+++...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2356789999999999999864333333 356799999999999999999
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-HcCchHHHHHHhcc
Q 016714 263 DACWALSYLSDG-PNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVI-DNGVLPCLYQLLTQ 339 (384)
Q Consensus 263 ~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-~~g~l~~L~~ll~~ 339 (384)
.++|+|++|+.. ++.....+.+.|+++.|+++| .+.++.++..|+++|+||+.++++....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999986 567778889999999999975 667889999999999999986655545555 78999999999998
Q ss_pred CCch---hHHHHHHHHHHHHhc---CCHHHHHHHHhCCc------cccCCCcc
Q 016714 340 NHKK---SIKKEACWTISNITA---GNRAQIQVHDSFHL------FVLHEDFS 380 (384)
Q Consensus 340 ~~~~---~v~~~a~~~L~nl~~---~~~~~i~~l~~~~~------ll~~~~~~ 380 (384)
..+. .++++|+|+|+|++. +++++.+.+++.|. +|++++++
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChH
Confidence 7322 499999999999997 89999999999998 56777654
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.7e-35 Score=270.47 Aligned_cols=275 Identities=20% Similarity=0.177 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC----------CChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH----------DMPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~----------~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
...+..|+++|.++.. + +++++.+++.|+++.|+.+|..+ .++.++..|+|+|+|++.+++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455689999999954 3 67888999999999999999521 1278999999999999998777887776
Q ss_pred h-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-
Q 016714 158 E-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK- 234 (384)
Q Consensus 158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~- 234 (384)
. .|++|.|+.+|.++++++++.|+|+|+||+.. ++.++..+.+.|++++|+++|..+.+.++++.++++|.||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 5 46699999999999999999999999999985 56689999999999999998756678889999999999999854
Q ss_pred CCCChhh-hhchHHHHHHhhccCCH----hHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHHhcCCCChhhHHHH
Q 016714 235 PPTPFEQ-VKPALPILQRLIHLNDE----EVLTDACWALSYLSD---GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPA 306 (384)
Q Consensus 235 ~~~~~~~-~~~~~~~L~~lL~~~~~----~i~~~a~~~l~~l~~---~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a 306 (384)
....... ..+++|.|+.+|.+.++ +++..++|+|.+|+. ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222222 47999999999987654 599999999999997 677888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714 307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365 (384)
Q Consensus 307 ~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~ 365 (384)
+++|+|++.+++++.+.+++.|+++.|+.++.++ ++.++++|+|+|.||+.+++++++
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999988999999999999999999999998 899999999999999997776543
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=271.69 Aligned_cols=306 Identities=18% Similarity=0.182 Sum_probs=255.3
Q ss_pred hhcCHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 016714 72 KLESIPSMVQGVWSE------------DPALQLEATTQFRKLLSIERSPPIDEVIKAGVV----------PRFVEFLGRH 129 (384)
Q Consensus 72 ~~~~l~~lv~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i----------~~Lv~lL~~~ 129 (384)
+.+.+|.|++.|+.. +++.+..|+|+|.++++++ ++..+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 348999999999964 3699999999999999987 7777777888888 7788888764
Q ss_pred C-ChH-----HHH-------HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHH
Q 016714 130 D-MPQ-----LQF-------EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALG 185 (384)
Q Consensus 130 ~-~~~-----~~~-------~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~ 185 (384)
. +.+ ++. .|+|+|+|++.+ +++|+.+++.|+++.|+.+|.. .++.++..|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 444 899999999775 9999999999999999999942 34779999999999
Q ss_pred hhhCCCCchhhHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChh-hhhchHHHHHHhh-ccCCHhHH
Q 016714 186 NVAGDSPSCRDLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFE-QVKPALPILQRLI-HLNDEEVL 261 (384)
Q Consensus 186 nl~~~~~~~~~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~-~~~~~~~~L~~lL-~~~~~~i~ 261 (384)
||+.+++..+..+.. .|++++|+.+| .+.+++++..++|+|.||+... +..... ...|++|.|+.+| .+.+..++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 999888767776654 45699999999 6788999999999999999852 222222 2379999999975 66789999
Q ss_pred HHHHHHHHHhccCChHHHHHHH-HcCChHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCchHHH
Q 016714 262 TDACWALSYLSDGPNDKIQAVI-EAGVCPRLVELLMHPSA----TVLIPALRTVGNIVT---GDDAQTQFVIDNGVLPCL 333 (384)
Q Consensus 262 ~~a~~~l~~l~~~~~~~~~~~~-~~g~~~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~g~l~~L 333 (384)
..++++|++|+.+.++....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. ++++..+.+++.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999985554444555 78999999999987654 489999999999996 788999999999999999
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714 334 YQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
+.+|.++ +..++++|+|+|+|++.+++++++.+++.|+ ++..++.++
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v 437 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHH
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 9999998 8999999999999999999999999999998 566666543
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.8e-34 Score=276.27 Aligned_cols=303 Identities=29% Similarity=0.402 Sum_probs=271.1
Q ss_pred cCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 74 ESIPSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.+|.|++.|.+++ +.++..|+++|.++.+.+ ......+++.|++|.|+.+|.+++ +.++..|+|+|++|+.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 67999999999887 999999999999998764 567778889999999999999987 999999999999999988899
Q ss_pred HHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 153 TRVVIEHGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
+..+.+.|+++.|+.+| .+.++.++..++|+|++++...+.. ......|+++.|+.++ .+.+..++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6688999999999999999876543 3445678999999999 7778999999999999999
Q ss_pred cCCCCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHH
Q 016714 232 RGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRT 309 (384)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~ 309 (384)
.+.+... .....+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8743222 222368999999999999999999999999999999888888899999999999999988 89999999999
Q ss_pred HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCCccc
Q 016714 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
|+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++. ++++++.++++.|+ ++..++.++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 9999998888889999999999999999998 89999999999999998 58999999999988 566655543
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7e-35 Score=277.73 Aligned_cols=297 Identities=16% Similarity=0.155 Sum_probs=244.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+|.++..|.+++++.|..|++.|++++..+ ++....+.+.|++|.|+++|++++ +.++..|+|+|+||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 6899999999999999999999999987542 444558999999999999999888 99999999999999998899999
Q ss_pred HHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------c-------chhH
Q 016714 155 VVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------H-------SKLS 218 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------~-------~~~~ 218 (384)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.+|.. . .+.+
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999998 568898888 999999999931 1 3567
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhh-h-chHHHHHHhhcc------CCHhHHHHHHHHHHHhccCC---------------
Q 016714 219 MLRNATWTLSNFCRGKPPTPFEQV-K-PALPILQRLIHL------NDEEVLTDACWALSYLSDGP--------------- 275 (384)
Q Consensus 219 ~~~~a~~~L~~L~~~~~~~~~~~~-~-~~~~~L~~lL~~------~~~~i~~~a~~~l~~l~~~~--------------- 275 (384)
+++.++|+|+|||.+ +....... . |++|.|+.+|.+ .+..++..++++|.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999987 43333333 3 899999999986 46678889999999987321
Q ss_pred -----------------------------------hHHHHHHHHcCChHHHHHhcCC-CChhhHHHHHHHHHHhhcCChH
Q 016714 276 -----------------------------------NDKIQAVIEAGVCPRLVELLMH-PSATVLIPALRTVGNIVTGDDA 319 (384)
Q Consensus 276 -----------------------------------~~~~~~~~~~g~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~ 319 (384)
+...+.+.+.|+++.|+.+|.+ .++.+++.|+|+|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1122234556778899999964 4689999999999999987643
Q ss_pred H---H-HHHH-HcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCc
Q 016714 320 Q---T-QFVI-DNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDF 379 (384)
Q Consensus 320 ~---~-~~i~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~ 379 (384)
. . +.++ +.|++|.|+++|.++ +..++++|+|+|+|++.+. +++.++..|+ ++..+++
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCS
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCC
Confidence 2 2 3344 689999999999999 8999999999999999853 4455665555 5666654
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.4e-33 Score=268.82 Aligned_cols=302 Identities=27% Similarity=0.362 Sum_probs=266.9
Q ss_pred cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.++.+++.+.++ ++.++..|++.|.++.+.+ .+....+++.|++|.|+++|.+++ +.++..|+|+|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999988 8999999999999998764 556677889999999999999988 999999999999999988889
Q ss_pred HHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 153 TRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
+..+++.|+++.|+.++.+ .+..++..++|+|++++.+. +..+..+. .++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 43333333 78999999999 677889999999999999
Q ss_pred hcCCCCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHH
Q 016714 231 CRGKPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309 (384)
Q Consensus 231 ~~~~~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~ 309 (384)
+...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 9875322 222236899999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc------cccCCCcc
Q 016714 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL------FVLHEDFS 380 (384)
Q Consensus 310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~------ll~~~~~~ 380 (384)
|+|++.+++...+.+++.|+++.|+.++.++ ++.++++|+|+|+|++. +++++++.+++.|+ ++..++.+
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 376 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHH
Confidence 9999999998888899999999999999998 89999999999999998 48899999998888 45655543
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.8e-33 Score=273.80 Aligned_cols=304 Identities=28% Similarity=0.358 Sum_probs=269.2
Q ss_pred hcCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 73 LESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 73 ~~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+.+|.|+..|.++ ++.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++.
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence 36899999999987 8999999999999998754 456677889999999999999887 99999999999999998889
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
.+..++..|+++.|+.++.+.+..++..|+|+|++++.+...........++++.|+.++ .+.+..++..++|+|.+|+
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999977622334556678999999999 6778899999999999999
Q ss_pred cCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 232 RGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
...+....... .+++|.|+.+|.+.++.++..++++|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87532222222 58999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHhCCc------cccCCCcc
Q 016714 311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNR--AQIQVHDSFHL------FVLHEDFS 380 (384)
Q Consensus 311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~i~~l~~~~~------ll~~~~~~ 380 (384)
+|++.+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++. +++ ++++.+++.|+ ++..++.+
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 999998888888899999999999999988 89999999999999998 566 88999999888 45555543
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3e-32 Score=261.65 Aligned_cols=293 Identities=18% Similarity=0.189 Sum_probs=237.7
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Cchh
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG-TSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~ 152 (384)
..+|.++.+|.++++.+|..|++.|.+++..+ .++...+++.|+||.|+.+|.+++ ++++..|+|+|+||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 57999999999999999999999999998754 777888999999999999999988 99999999999999996 6899
Q ss_pred HHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-----------------cc
Q 016714 153 TRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN-----------------EH 214 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~-----------------~~ 214 (384)
+..+++.|+||.|+.+|.+ .+.+++++++++|+||+.. +.++..+.+ +++++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6889999999999999985 457777775 57999999762 11
Q ss_pred chhHHHHHHHHHHhhhhcCCCCCChhhh----------------------------------------------------
Q 016714 215 SKLSMLRNATWTLSNFCRGKPPTPFEQV---------------------------------------------------- 242 (384)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~---------------------------------------------------- 242 (384)
.+..++.+++|+|.||+...+.......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2456667777777777654321000000
Q ss_pred -----------------------hchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChH---HHH-HHHHcCChHHHHHh
Q 016714 243 -----------------------KPALPILQRLIH-LNDEEVLTDACWALSYLSDGPND---KIQ-AVIEAGVCPRLVEL 294 (384)
Q Consensus 243 -----------------------~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~---~~~-~~~~~g~~~~L~~l 294 (384)
.++++.++.+|. +.++.+++.|+|+|++|+.+... ..+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 123445566664 45678888999999999876521 222 34456889999999
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 295 LMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-------KKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 295 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
|.+++..++..|+++|+|++.+... +.++..|+++.|+.+|.++. ...+...|||+|+||+++++++.+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999986543 34567899999999999862 25788899999999999999999999
Q ss_pred HhCCc
Q 016714 368 DSFHL 372 (384)
Q Consensus 368 ~~~~~ 372 (384)
++.|.
T Consensus 442 ~~~g~ 446 (584)
T 3l6x_A 442 RETQG 446 (584)
T ss_dssp HHTTH
T ss_pred HHCCC
Confidence 99998
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.2e-32 Score=260.48 Aligned_cols=280 Identities=20% Similarity=0.217 Sum_probs=237.8
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcCCch
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+.+|.|++.|.++++.+|..|+++|+++.+.+ +++...+++.|++|.|+++|. +++ +++++.|+|+|+||+.+ ++
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS-SS
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcC-HH
Confidence 478999999999999999999999999998753 677777889999999999999 666 99999999999999997 78
Q ss_pred hHHHHHhcCChHHHHHhh--------cC--------CCHHHHHHHHHHHHhhhCCCCchhhHHHhc-CChHHHHHHhccc
Q 016714 152 HTRVVIEHGAVPMFVQLL--------SS--------GSDDVREQAVWALGNVAGDSPSCRDLVLSS-GALMPLLAQLNEH 214 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL--------~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~-g~i~~L~~~l~~~ 214 (384)
.+..+++ |++|.|+.+| .+ .++.++..|+|+|+||+.+ +..++.+.+. |++++|+.+|...
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence 8888999 9999999999 33 2466777999999999988 7788999887 9999999877420
Q ss_pred --------------------------------------------------------------------------------
Q 016714 215 -------------------------------------------------------------------------------- 214 (384)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (384)
T Consensus 198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
T 1xm9_A 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277 (457)
T ss_dssp HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence
Q ss_pred ------------------chhHHHHHHHHHHhhhhcCCCCCC----hhhh--hchHHHHHHhhccCCHhHHHHHHHHHHH
Q 016714 215 ------------------SKLSMLRNATWTLSNFCRGKPPTP----FEQV--KPALPILQRLIHLNDEEVLTDACWALSY 270 (384)
Q Consensus 215 ------------------~~~~~~~~a~~~L~~L~~~~~~~~----~~~~--~~~~~~L~~lL~~~~~~i~~~a~~~l~~ 270 (384)
.++.+++.++|+|+|||.+..... ...+ .+++|.|+++|.+++.+++..|+|+|++
T Consensus 278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357 (457)
T ss_dssp GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence 123456678999999998753321 1122 6899999999999999999999999999
Q ss_pred hccCChHHHHHHHHcCChHHHHHhcCCCCh------hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchh
Q 016714 271 LSDGPNDKIQAVIEAGVCPRLVELLMHPSA------TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKS 344 (384)
Q Consensus 271 l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~------~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~ 344 (384)
++.+.. . ..++..|+++.|+.+|.+.++ ++...++++|+|++.++++....+.+.|+++.|..++.+++++.
T Consensus 358 ls~~~~-~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 358 MSRHPL-L-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435 (457)
T ss_dssp HHTSGG-G-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred HhcCHH-H-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence 998643 3 345667899999999987643 58889999999999999999999999999999999999875789
Q ss_pred HHHHHHHHHHHHhcC
Q 016714 345 IKKEACWTISNITAG 359 (384)
Q Consensus 345 v~~~a~~~L~nl~~~ 359 (384)
+++.|+|+|.|+...
T Consensus 436 i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 436 AAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999999863
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.8e-31 Score=252.72 Aligned_cols=295 Identities=16% Similarity=0.169 Sum_probs=241.2
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+.||.|+++|.++++.+|..|+++|++++..+..++...+++.|+||.|+.+|.++.++.++..|+++|.|++. +++.
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~ 167 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSI 167 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGG
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence 478999999999999999999999999998753367888899999999999999974338999999999999998 5788
Q ss_pred HHHHHhcCChHHHHHhhc------------------CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC-hHHHHHHhcc
Q 016714 153 TRVVIEHGAVPMFVQLLS------------------SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA-LMPLLAQLNE 213 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~-i~~L~~~l~~ 213 (384)
+..+++ +++|.|+.++. .+++.++++|+++|.||+.+++..|..+.+.++ ++.|+.++..
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 888886 57999999871 235799999999999999988777777776544 4566666532
Q ss_pred -------------------------------------------------------------------------cchhHHH
Q 016714 214 -------------------------------------------------------------------------HSKLSML 220 (384)
Q Consensus 214 -------------------------------------------------------------------------~~~~~~~ 220 (384)
+.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 1223445
Q ss_pred HHHHHHHhhhhcCCCCCC---hhhh--hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc
Q 016714 221 RNATWTLSNFCRGKPPTP---FEQV--KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 295 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~---~~~~--~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL 295 (384)
++++|+|.|||.+..... ...+ .+++|.|+.+|.+++..++..++|+|+||+.+.... .++..|+++.|+.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHh
Confidence 566666666666531110 1122 578999999999999999999999999999886543 345789999999999
Q ss_pred CCC--------ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714 296 MHP--------SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRAQIQV 366 (384)
Q Consensus 296 ~~~--------~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~i~~ 366 (384)
.++ +..+...|+++|+||+++++++++.+++.|+++.|+.++.+. ..+.+++.|+|+|+|+.. .++....
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-~~elr~~ 483 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-YKELRKP 483 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-CHHHHHH
Confidence 876 357889999999999999999999999999999999999874 378999999999999998 6777777
Q ss_pred HHhCCc
Q 016714 367 HDSFHL 372 (384)
Q Consensus 367 l~~~~~ 372 (384)
+-+.|+
T Consensus 484 ~kk~G~ 489 (584)
T 3l6x_A 484 LEKEGW 489 (584)
T ss_dssp HHTTTC
T ss_pred HHHcCC
Confidence 778887
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=100.00 E-value=5.1e-31 Score=231.29 Aligned_cols=240 Identities=28% Similarity=0.444 Sum_probs=222.7
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
|.+|.|+++|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..++|+|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57999999999988 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.+.+.|+++.|+.++ .+.+++++..++|+|.+|+...+..... ...+++|.|++++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6778999999999999999764332222 23789999999999999999999999999999988
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
+.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998899999999999999999999998 89999999999999
Q ss_pred HhcC
Q 016714 356 ITAG 359 (384)
Q Consensus 356 l~~~ 359 (384)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9963
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=7.7e-31 Score=230.49 Aligned_cols=239 Identities=35% Similarity=0.537 Sum_probs=219.9
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
..++.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999998 89999999999887776788888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.+.+.|+++.|+.+| .++++.++..++|+|.+|+...+.. ......+++|.|+.+|.++++.++..++|+|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678899999999999999875433 33334789999999999999999999999999999988
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998999999999999999999999998 89999999999999
Q ss_pred Hhc
Q 016714 356 ITA 358 (384)
Q Consensus 356 l~~ 358 (384)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=2.4e-30 Score=227.37 Aligned_cols=239 Identities=36% Similarity=0.547 Sum_probs=218.1
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
..++.+++.|++++++++..|++.|+++++.. .+++..+++.|++|.|+.+|.+++ +.++..|+|+|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 46799999999999999999999999988874 777888999999999999999988 9999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775448889999999999999 667889999999999999987
Q ss_pred CCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 234 KPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 234 ~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
.+..... ...+++|.|+.+|.++++.++..++++|++++..+++....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5332222 237899999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred hhc
Q 016714 313 IVT 315 (384)
Q Consensus 313 l~~ 315 (384)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=9e-30 Score=223.31 Aligned_cols=242 Identities=28% Similarity=0.400 Sum_probs=221.7
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+.++.+++.|.+++++++..|++.|.+++... .+....+++.|+++.|+.+|.+++ +.++..|+|+|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 56899999999999999999999999998764 457888999999999999999988 9999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+.+.|+++.|+.+|.++++.++..|+|+|+|++...+..+..+.+.|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988888899999999999999999 677789999999999999987
Q ss_pred CCCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 234 KPPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 234 ~~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
.+... .....+++|.|+.++.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 53322 22337899999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred hhcCCh
Q 016714 313 IVTGDD 318 (384)
Q Consensus 313 l~~~~~ 318 (384)
++...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 987543
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=3.6e-29 Score=243.22 Aligned_cols=293 Identities=18% Similarity=0.200 Sum_probs=257.4
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+.+|.+++.+.++++.++..|++.|.+++..+ ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 378999999999999999999999999998764 556777889999999999999987 899999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 153 TRVVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
+..+.+.|+++.|+.+++++ +...+..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHh
Confidence 99999999999999999864 566778889999999975 45788899999999999999 5668889999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRT 309 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~ 309 (384)
...+.. ....+++|.|++++.+++++++..++|+|++|+.++++....+.+.|+++.|+.+|.+ .++.++.+|+++
T Consensus 256 ~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 256 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp TTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 975432 2346899999999999999999999999999999888888899999999999999965 347899999999
Q ss_pred HHHhhcCChH---HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 310 VGNIVTGDDA---QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 310 l~nl~~~~~~---~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
|+|++.++++ ....+++.|+++.|..++.++.++.++++|+|+|+|++.++..+ +.+++.|+
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~ 398 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA 398 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCC
Confidence 9999886543 35578899999999999998834699999999999999976655 78888887
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.3e-29 Score=231.56 Aligned_cols=246 Identities=20% Similarity=0.181 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHh
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLS 200 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~ 200 (384)
...+..|+|+|+|++.+ +++|..+++.|+++.|+.+|.. .++.++..|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35556899999999996 8999999999999999999952 34789999999999999888767777754
Q ss_pred -cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChh-hhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCCh
Q 016714 201 -SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFE-QVKPALPILQRLI-HLNDEEVLTDACWALSYLSDGPN 276 (384)
Q Consensus 201 -~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~-~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~ 276 (384)
.|++++|+.+| .+.+++++..++|+|.||+... +..... ...|++|.|+++| .+.+.+++..++++|++|+.+.+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45599999999 6788899999999999999862 222222 2379999999975 66789999999999999998665
Q ss_pred HHHHHHH-HcCChHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCchHHHHHHhccCCchhHHHH
Q 016714 277 DKIQAVI-EAGVCPRLVELLMHPSA----TVLIPALRTVGNIVT---GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKE 348 (384)
Q Consensus 277 ~~~~~~~-~~g~~~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~ 348 (384)
+....+. ..|+++.|+.+|.++++ .++..|+++|.|++. ++++..+.+++.|+++.|+.+|.++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5555566 78999999999987654 489999999999986 7888899999999999999999998 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCc------cccCCCcc
Q 016714 349 ACWTISNITAGNRAQIQVHDSFHL------FVLHEDFS 380 (384)
Q Consensus 349 a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~ 380 (384)
|+|+|+|++.+++++++.+++.|+ +++.++.+
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~ 320 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 320 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 999999999999999999999999 56666554
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.5e-29 Score=246.56 Aligned_cols=293 Identities=19% Similarity=0.200 Sum_probs=257.5
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+.++.|++.|+++++.++..|+++|.++++.. ......+.+.|++|.|+.+|.+++ +.++..++.+|.+++.++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence 367999999999999999999999999998865 566777889999999999999987 888888899999999988999
Q ss_pred HHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 153 TRVVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
+..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+||
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999875 467889999999999964 45789999999999999999 5667889999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRT 309 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~ 309 (384)
...+. .....+++|.|+.+|.+.+++++..++|+|++|+..+......+.+.|+++.|+.+|.+. .+.++..|+++
T Consensus 253 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 253 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 87533 234468999999999999999999999999999999888888899999999999999763 37999999999
Q ss_pred HHHhhcCCh--HHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 310 VGNIVTGDD--AQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 310 l~nl~~~~~--~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
|+||+...+ +..+ .+++.|+++.|..+|.++.++.++++|+|+|+|++.++..+ +.+++.|+
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~ 395 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA 395 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCC
Confidence 999997543 2333 47889999999999998744799999999999999976665 78888887
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=2.5e-27 Score=239.56 Aligned_cols=293 Identities=19% Similarity=0.207 Sum_probs=254.6
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+.++.|++.|.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence 367999999999999999999999999998764 556666778999999999999877 899999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 153 TRVVIEHGAVPMFVQLLSSGS-DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
+..+++.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence 999999999999999998754 566778899999999754 4788889999999999999 5667889999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-C-hhhHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-S-ATVLIPALRT 309 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~-~~v~~~a~~~ 309 (384)
...+. .....+++|.|+.+|.+.++.++..++|+|++|+.++++....+.+.|+++.|+.+|.+. + ..++..|+++
T Consensus 389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a 466 (780)
T 2z6g_A 389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466 (780)
T ss_dssp TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence 87633 223478999999999999999999999999999999888888899999999999999753 3 4899999999
Q ss_pred HHHhhcCChH---HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 310 VGNIVTGDDA---QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 310 l~nl~~~~~~---~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
|+||+...++ ....+.+.|+++.|+.+|.++..+.++++|+|+|+|++.++..+ ..+++.|+
T Consensus 467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~ 531 (780)
T 2z6g_A 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGA 531 (780)
T ss_dssp HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTH
T ss_pred HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCC
Confidence 9999875543 23467889999999999998844599999999999999966655 78888887
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=1.7e-27 Score=231.37 Aligned_cols=293 Identities=16% Similarity=0.179 Sum_probs=252.8
Q ss_pred cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.++.+++.|.++ ++.++..|+..|+++... .++...+.+.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 4689999999754 899999999999998553 457788899999999999999988 999999999999999987788
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
+..+.+.|++|.|+.++.+++..++..++.+|.+++.+++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999998888899999999999999999766667788889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
...........+++|.|+.++.++++.++..++|+|.+++....... ...|+++.|+++|.++++.++..|+++|+|
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64322222337899999999999999999999999999998754321 123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHhCCc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRA---QIQVHDSFHL 372 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~i~~l~~~~~ 372 (384)
++.++++....+.+.|+++.|+.++.+. +++.++..|+++|+|++.++++ ....+++.|.
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~ 356 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCC
Confidence 9998888889999999999999999863 2479999999999999985432 3556777776
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=228.66 Aligned_cols=293 Identities=16% Similarity=0.173 Sum_probs=250.7
Q ss_pred cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.++.+++.|.++ +++++..|+..|+++... ..+...+.+.|+++.|+.+|.+++ +.++..|+++|.|++.+++..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4589999999865 899999999999987543 457778889999999999999988 999999999999999987788
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
+..+++.|++|.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........++.++.+|.+|+.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999987777889999999999999999666667788999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
...........++++.|+.++.+.+..++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|+|
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333333789999999999999999999999999999765331 1123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccCCc-hhHHHHHHHHHHHHhcCC--HHHHHH-HHhCCc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHK-KSIKKEACWTISNITAGN--RAQIQV-HDSFHL 372 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~--~~~i~~-l~~~~~ 372 (384)
++.+++.....+++.|+++.|+.++.+..+ +.++..|+|+|+|++..+ .++.+. +++.|.
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~ 353 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 353 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccC
Confidence 999888888999999999999999987423 799999999999999743 333343 666665
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=6.2e-26 Score=193.51 Aligned_cols=200 Identities=33% Similarity=0.486 Sum_probs=181.4
Q ss_pred HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc
Q 016714 114 IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 114 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
...|..+.|+.+|.+++ +.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 35688999999999988 99999999999999988899999999999999999999999999999999999999988888
Q ss_pred hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
.+..+.+.|+++.|+.+| .+.++.++..++|+|.|++...+..... ...+++|.|+.+|.++++.++..++|+|++++
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999 6778999999999999999865333222 23789999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 273 DGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 273 ~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
..+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9988888889999999999999999999999999999999975
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.94 E-value=6.2e-26 Score=229.34 Aligned_cols=293 Identities=16% Similarity=0.179 Sum_probs=249.4
Q ss_pred cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.++.|++.|.++ ++.++..|+.+|.++... ..+...+.+.|++|.|+.+|++++ +.++..|+|+|+||+.+++..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4689999999855 899999999999997543 455777889999999999999988 999999999999999988888
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988788888999999999999999666566677889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
...........+++|.|+.++.+.+..++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6332222233789999999999999999999999999999765431 1124679999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHhCCc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHK-KSIKKEACWTISNITAGNRA---QIQVHDSFHL 372 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~i~~l~~~~~ 372 (384)
|+.+++.....+++.|+++.|+.+|.+..+ ..++..|+|+|+||+.++++ ....+.+.|.
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~ 489 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence 999988888999999999999999987423 48999999999999975433 2335666665
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=2e-25 Score=190.31 Aligned_cols=199 Identities=33% Similarity=0.483 Sum_probs=180.8
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC
Q 016714 158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237 (384)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~ 237 (384)
..|..+.|+.+|.++++.++..|+|+|++++..++..+..+.+.|+++.|+.+| .+.++.++..++|+|.|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 457899999999999999999999999999988888889999999999999999 6668899999999999999765333
Q ss_pred Ch-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 238 PF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 238 ~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
.. ....+++|.|+.+|.++++.++..++|+|++++.+.++....+.+.|+++.|+.+|.++++.++..|+++|+|++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22 23378999999999999999999999999999998888888899999999999999999999999999999999998
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++.....+.+.|+++.|..++.++ ++.+++.|+|+|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 888888999999999999999998 99999999999999975
No 33
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=4.1e-25 Score=196.65 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHH
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQ 210 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~ 210 (384)
.+-+..|+..|.+++.+ .++...+.+.|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999984 678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 016714 211 LNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCP 289 (384)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~ 289 (384)
|..+++..+++.++|+|+|++++.+.....+. .+++|.|+.+|.+++..++..++|+|++++.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 96556788999999999999998643322333 78999999999999999999999999999999888899999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc--CchHHH---HHHhccCC-chhHHHHHHHHHHHHhc
Q 016714 290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN--GVLPCL---YQLLTQNH-KKSIKKEACWTISNITA 358 (384)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--g~l~~L---~~ll~~~~-~~~v~~~a~~~L~nl~~ 358 (384)
.|+.+|.++++.++..|+++|+||+.+.+......-.. .+...| ..-++..+ ..++.+.|.-++.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998865443322211 121222 23333231 35666677777777664
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.92 E-value=7.4e-24 Score=188.53 Aligned_cols=236 Identities=15% Similarity=0.137 Sum_probs=187.5
Q ss_pred CHHHHHHHhcCCC------------HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCChHHHHHHHHH
Q 016714 75 SIPSMVQGVWSED------------PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVE-FLGRHDMPQLQFEAAWA 141 (384)
Q Consensus 75 ~l~~lv~~l~s~~------------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~~ 141 (384)
.++..+..|.++. .+.+..|+..|..++.. .++...+.+.|++|.|+. +|.+++ +.++..|+|+
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~ 105 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 4566677776642 35778899999988753 456777889999999999 999988 9999999999
Q ss_pred HHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHH
Q 016714 142 LTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML 220 (384)
Q Consensus 142 L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~ 220 (384)
|++++.+++.++..+++.|++|.|+.+|.+ ++..++..|+|+|+|++.+.+.....+.+.|++++|+.+| .+.+..++
T Consensus 106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~ 184 (296)
T 1xqr_A 106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLK 184 (296)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHH
Confidence 999999999999999999999999999996 5899999999999999998877777888899999999999 67789999
Q ss_pred HHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc--CChHH---HHHh
Q 016714 221 RNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA--GVCPR---LVEL 294 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~--g~~~~---L~~l 294 (384)
..++|+|++|+.+.+......+ .|++|.|+.+|.+++..++..++++|++|+...+......... .+... -.+.
T Consensus 185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999988543333333 8999999999999999999999999999998865443322211 11111 1222
Q ss_pred cC-CC-ChhhHHHHHHHHHHhh
Q 016714 295 LM-HP-SATVLIPALRTVGNIV 314 (384)
Q Consensus 295 L~-~~-~~~v~~~a~~~l~nl~ 314 (384)
+. ++ +..+...+..++-++.
T Consensus 265 lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 265 LQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHc
Confidence 33 22 3455566666666554
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=4.6e-24 Score=181.94 Aligned_cols=197 Identities=20% Similarity=0.151 Sum_probs=172.1
Q ss_pred CHHHHHHhhcCCCCh--HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714 118 VVPRFVEFLGRHDMP--QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~--~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
.+|.++++|.+++ + +++..|+++|.+++.++++.+..+++.|+||.|+.+|.++++++++.|+|+|.||+.+++.++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 899999999999999889999999999999999999999999999999999999999888899
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----------------cCCHh
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH----------------LNDEE 259 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~----------------~~~~~ 259 (384)
..+.+.|++++|+++|....+.++++.++.+|+||+... ........+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999955678899999999999999864 3334445678999988662 13678
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcCC------CChhhHHHHHHHHHHhhcC
Q 016714 260 VLTDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLMH------PSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 260 i~~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~ 316 (384)
++..+.++|.+|+..+++..+.+.+. |+++.|+.++.. .+.+.++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999887777788876 778999999964 2567899999999999864
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=198.06 Aligned_cols=291 Identities=11% Similarity=0.103 Sum_probs=228.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCCch-
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSE- 151 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~- 151 (384)
..+.+++.+.+++.+.+..|++.|..+ +.. .+..+.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYL-SLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHH-TTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHH-hCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence 356777788887777789999999977 432 33444455 55779999999996 55 78999999999999984331
Q ss_pred -------------------------------------hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714 152 -------------------------------------HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 152 -------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
.+..+.+.|++|.|+.++.++++.+++.++|+|+||+.+ +.+
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~ 490 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF 490 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence 356678899999999999999999999999999999977 568
Q ss_pred hhHHHhcCChHHHHHHhcccchh--HHHHHHHHHHhhhhcCC-CCCChh--hhhchHHHHHHhhcc-CCH----------
Q 016714 195 RDLVLSSGALMPLLAQLNEHSKL--SMLRNATWTLSNFCRGK-PPTPFE--QVKPALPILQRLIHL-NDE---------- 258 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~~~~~--~~~~~a~~~L~~L~~~~-~~~~~~--~~~~~~~~L~~lL~~-~~~---------- 258 (384)
|..+.+.|++++|+.++....+. ..+..|+++|++++... |...+. ...+++|.|+.+|.. ++.
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999655433 27889999999999653 211110 114899999999983 221
Q ss_pred ---hHHHHHHHHHHHhccCCh----HHHHHHHHc-CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---
Q 016714 259 ---EVLTDACWALSYLSDGPN----DKIQAVIEA-GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN--- 327 (384)
Q Consensus 259 ---~i~~~a~~~l~~l~~~~~----~~~~~~~~~-g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~--- 327 (384)
--..+|+.||.||+..++ +....+++. |+++.|..+|.+++..++..|+++++|++.+.+...+.+.+.
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 126799999999999872 334567875 999999999999999999999999999998444322334322
Q ss_pred ---CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714 328 ---GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSF 370 (384)
Q Consensus 328 ---g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~ 370 (384)
+.++.|+.++..+ +..+|+.|+|+|+|++.+++..++.+++.
T Consensus 651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~ 695 (778)
T 3opb_A 651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTK 695 (778)
T ss_dssp HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 2378899999888 99999999999999998888888888876
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=178.76 Aligned_cols=197 Identities=16% Similarity=0.153 Sum_probs=167.5
Q ss_pred cCHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 74 ESIPSMVQGVWSEDP--ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
..+|.+++.|.++++ ++|..|++.+.++...+ +++...+++.|+||.|+++|++++ +++|+.|+|+|+||+.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 378999999999988 89999999999887654 667888999999999999999988 99999999999999998899
Q ss_pred hHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc---------------cc
Q 016714 152 HTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE---------------HS 215 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~---------------~~ 215 (384)
++..+++.|+||.|+.+|. +.+.+++++++.+|+||+.... ++..+.+ +++++|+.++.. ..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999998 5789999999999999997654 6777776 468999886630 12
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCChhhh--hchHHHHHHhhccC------CHhHHHHHHHHHHHhccC
Q 016714 216 KLSMLRNATWTLSNFCRGKPPTPFEQV--KPALPILQRLIHLN------DEEVLTDACWALSYLSDG 274 (384)
Q Consensus 216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~lL~~~------~~~i~~~a~~~l~~l~~~ 274 (384)
+.+++.+++++|.||+...+....... .|+++.|+.+++.. +...++.++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 568999999999999986533333333 57889999999652 567899999999999865
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.8e-21 Score=189.72 Aligned_cols=280 Identities=12% Similarity=0.106 Sum_probs=224.1
Q ss_pred cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCC-------------------C------------------cHHHHHH
Q 016714 74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERS-------------------P------------------PIDEVIK 115 (384)
Q Consensus 74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~-------------------~------------------~~~~~~~ 115 (384)
+.++.|++.+++ ++..+.+.++..|.|++...+. | +...+++
T Consensus 376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e 455 (778)
T 3opb_A 376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455 (778)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence 458899999984 7788999999999999864321 0 2344668
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHH---HHHHHHHHHHhhhCC-C
Q 016714 116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD---VREQAVWALGNVAGD-S 191 (384)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nl~~~-~ 191 (384)
.|++|.|+.++++++ +.++..|+|+|.|++. +++++..+++.|+++.|+.+|.+.... .+..|+.+|.+++.. +
T Consensus 456 aGvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 456 TELISFLKREMHNLS-PNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTHHHHHHHHGGGSC-HHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 899999999999988 9999999999999987 499999999999999999999986554 899999999999843 3
Q ss_pred CchhhHHH---hcCChHHHHHHhcccchh-------------HHHHHHHHHHhhhhcCCCC----CChhhh--hchHHHH
Q 016714 192 PSCRDLVL---SSGALMPLLAQLNEHSKL-------------SMLRNATWTLSNFCRGKPP----TPFEQV--KPALPIL 249 (384)
Q Consensus 192 ~~~~~~i~---~~g~i~~L~~~l~~~~~~-------------~~~~~a~~~L~~L~~~~~~----~~~~~~--~~~~~~L 249 (384)
|.. .+- ..|++++|+.+|..++.. --...++.+|.||+..+.+ .....+ .+++|.|
T Consensus 534 p~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 534 PGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp HHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred HHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 321 110 137899999999522211 1266899999999998521 123333 3799999
Q ss_pred HHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc------CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 016714 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA------GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQF 323 (384)
Q Consensus 250 ~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~------g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 323 (384)
..+|.+++..++..|+++++||+..+....+.+.+. +.++.|+.++..++..++..|+++|+|++++.+.....
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999999999999999998655321233322 23788999999999999999999999999888888888
Q ss_pred HHHc-CchHHHHHHhcc--CCchhHHHHHHHHHHHHhc
Q 016714 324 VIDN-GVLPCLYQLLTQ--NHKKSIKKEACWTISNITA 358 (384)
Q Consensus 324 i~~~-g~l~~L~~ll~~--~~~~~v~~~a~~~L~nl~~ 358 (384)
+++. ++++.++.++.. + ++.++..++.++.|++.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred HHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence 8887 799999999998 6 89999999999999995
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=2.9e-15 Score=142.58 Aligned_cols=296 Identities=14% Similarity=0.208 Sum_probs=229.4
Q ss_pred cCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCChHH
Q 016714 74 ESIPSMVQGVWS--EDPALQLEATTQFRKLLSIERSP----------------PIDEVI-KAGVVPRFVEFLGRHDMPQL 134 (384)
Q Consensus 74 ~~l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~i~~Lv~lL~~~~~~~~ 134 (384)
.+++.++..|+. +|.+....++..|.++++.+..+ ..+.++ +.+.++.|+.+|+..+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999985 46788888899998887754221 122333 5578999999999888 899
Q ss_pred HHHHHHHHHHHhcCCch-hHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc
Q 016714 135 QFEAAWALTNVASGTSE-HTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN 212 (384)
Q Consensus 135 ~~~a~~~L~nl~~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~ 212 (384)
+..++.+|..++...++ ..+.+.. .++++.|+.+|.++.+.+|..++..|.+++.+++.++..+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999988777 6677775 489999999999999999999999999999999999999999999999999995
Q ss_pred ccch---hHHHHHHHHHHhhhhcCCCCCC-hhhhhchHHHHHHhhccCCH------hHHHH---HHHHHHHhccCC----
Q 016714 213 EHSK---LSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLNDE------EVLTD---ACWALSYLSDGP---- 275 (384)
Q Consensus 213 ~~~~---~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~L~~lL~~~~~------~i~~~---a~~~l~~l~~~~---- 275 (384)
.... -.+...++.++.||.+.++..+ .....+++|.|..+|..++. ....+ ++.++.-++..+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4332 3578899999999999864333 22337899999999875432 23333 666666666552
Q ss_pred --hHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcC---------chHHHHHHhccCCc
Q 016714 276 --NDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDNG---------VLPCLYQLLTQNHK 342 (384)
Q Consensus 276 --~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g---------~l~~L~~ll~~~~~ 342 (384)
..+...+.+.|+++.|++++... ...++..|+.+++.++.+++...+.+.+.. ++..|..++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23455788999999999999765 568899999999999999988777766532 33444455655546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714 343 KSIKKEACWTISNITAGNRAQIQVHDSF 370 (384)
Q Consensus 343 ~~v~~~a~~~L~nl~~~~~~~i~~l~~~ 370 (384)
..+|-+|+.++..+..++++....++..
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~ 406 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVST 406 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 8899999999999999888654455443
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=3.2e-15 Score=142.35 Aligned_cols=292 Identities=17% Similarity=0.157 Sum_probs=229.9
Q ss_pred cCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCch
Q 016714 74 ESIPSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-DMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
++++.|+..+.+.. .+.+..|+..|+.+.. +. ...+-.++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~y-~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK----KY-RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----TT-TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHH----Hh-HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 46889999888654 7899999999998742 22 2334456799999999764 3488999999999887765432
Q ss_pred -----------------hHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc-hhhHHHh-cCChHHHHHHh
Q 016714 152 -----------------HTRVVI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS-CRDLVLS-SGALMPLLAQL 211 (384)
Q Consensus 152 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~-~g~i~~L~~~l 211 (384)
.++.++ +.+.++.|+.+|.+++..++-.++.+|..++...+. .++.++. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223343 467899999999999999999999999999987776 7787884 48999999999
Q ss_pred cccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCC----HhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 016714 212 NEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLND----EEVLTDACWALSYLSDGPNDKIQAVIEAG 286 (384)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~----~~i~~~a~~~l~~l~~~~~~~~~~~~~~g 286 (384)
.+..+.++-.++.+|.+|+.++++.+.... .++++.|+.++.... ..+..+++.++.+|..++..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 666677888999999999998755554444 799999999997654 47899999999999999988888899999
Q ss_pred ChHHHHHhcCCCChh------hHH---HHHHHHHHhhcCC------hHHHHHHHHcCchHHHHHHhccCC-chhHHHHHH
Q 016714 287 VCPRLVELLMHPSAT------VLI---PALRTVGNIVTGD------DAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEAC 350 (384)
Q Consensus 287 ~~~~L~~lL~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~ 350 (384)
.++.|..+|..+.+. ... .++.++.-++... ......+.+.|+++.|++++..+. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 122 2566666666542 234457789999999999987652 567999999
Q ss_pred HHHHHHhcCCHHHHHHHHhCC
Q 016714 351 WTISNITAGNRAQIQVHDSFH 371 (384)
Q Consensus 351 ~~L~nl~~~~~~~i~~l~~~~ 371 (384)
.+++.+..|++...+++.+..
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHhCCHHHHHHHhhcc
Confidence 999999999999877776543
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=3.9e-15 Score=132.25 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=179.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
..++.++..|.++++.++..|++.|.++.. .+.++.|+.+|.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 578999999999999999999999998732 236899999999988 9999999999999875321 11
Q ss_pred HHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 154 RVVIEHGAVPMFV-QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 154 ~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
. .+++.|. .++.++++.++..++++|+++....+.. ....++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 1234444 2457789999999999999997443322 123567888888 77889999999999998764
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|+.+|.++++.++..|+++|++
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999854333 246788999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+.. ...++.|...+.++ + ++..|+++|+.+..
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD 250 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc
Confidence 862 34678888888765 3 89999999999864
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=2.4e-14 Score=127.10 Aligned_cols=201 Identities=16% Similarity=0.162 Sum_probs=161.4
Q ss_pred HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714 115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
..+.++.|+..|.+++ +.++..|+++|+++.. .++++.|+.++.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 5578999999999888 9999999999999863 246889999999999999999999999986543321
Q ss_pred hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
.. .++.|...+..+.+..++..++++|..++...+ ......++.|..++.++++.++..++++|+++..
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 233343333367788999999999999985432 1224678999999999999999999999998753
Q ss_pred ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354 (384)
Q Consensus 275 ~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 354 (384)
.+.++.|+.+|.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+|+|+
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2578999999999999999999999999864333 2456788899888 8999999999999
Q ss_pred HHhc
Q 016714 355 NITA 358 (384)
Q Consensus 355 nl~~ 358 (384)
++..
T Consensus 218 ~~~~ 221 (280)
T 1oyz_A 218 YRKD 221 (280)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 9873
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.61 E-value=4.2e-15 Score=152.38 Aligned_cols=274 Identities=14% Similarity=0.170 Sum_probs=199.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.+++.+.++++.++..|++++..++... ...... .-.++++.++.++.+++ +.++..|+++|+.++...++...
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHH
Confidence 3566677778888999999999998877542 111110 11256888888888887 99999999999999986655433
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh--cCChHHHHHHhc----------cc--------
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS--SGALMPLLAQLN----------EH-------- 214 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~~l~----------~~-------- 214 (384)
..++ ++++.++..+.+.++.++..|++++..++.... .+..+.. ...++.++..+. .+
T Consensus 252 ~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 252 PHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 3333 478888889999999999999999999986542 2222111 124555655552 11
Q ss_pred ---chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 016714 215 ---SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRL 291 (384)
Q Consensus 215 ---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L 291 (384)
.+..++..+..+|..++...+ ......++|.+..++.++++.++..++++++.++.+..+..... -.++++.+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l 405 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHL 405 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHH
Confidence 112357788888888887543 23446788889999999999999999999999999876544332 24678999
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+..+.++++.++..|++++|+++...........-.++++.|...+.++ ++.++..|+|+|.+++.
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864221111111225778888888888 89999999999999996
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.60 E-value=7.5e-14 Score=118.49 Aligned_cols=188 Identities=21% Similarity=0.202 Sum_probs=158.2
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714 116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
.+.++.|+.+|.+++ +.++..|+++|+.+.. .++++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457999999999888 9999999999998754 2678999999999999999999999999852
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.+.++.|+..| .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888988 77888999999999998864 2578999999999999999999999999843
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
...++.|..+|.++++.++..|+.+|+.+.. ..+++.|..++.++ ++.+|..|.++|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2467889999999999999999999999853 23567788888888 89999999999999
Q ss_pred HhcCC
Q 016714 356 ITAGN 360 (384)
Q Consensus 356 l~~~~ 360 (384)
+...+
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 98743
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.57 E-value=9.6e-14 Score=116.87 Aligned_cols=185 Identities=21% Similarity=0.212 Sum_probs=158.1
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
+..+.++++|.+++ +.++..|+++|+.+.. .++++.|+.+|.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 56889999999999 9999999999998754 2578999999999999999999999999842
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~ 276 (384)
...++.|+..| .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 13678888988 67889999999999998754 2578899999999999999999999999853
Q ss_pred HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 277 ~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
.+.++.|..++.++++.++..|+++|+.+. .+ ..++.|..++.++ ++.+|..|.++|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 356788999999999999999999999993 22 2566788888888 899999999999987
Q ss_pred hc
Q 016714 357 TA 358 (384)
Q Consensus 357 ~~ 358 (384)
..
T Consensus 197 ~~ 198 (201)
T 3ltj_A 197 KS 198 (201)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.56 E-value=2e-13 Score=115.78 Aligned_cols=188 Identities=19% Similarity=0.176 Sum_probs=157.5
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+.++.++..|.++++.++..|+..|..+-. .+.++.|+.+|.+++ +.++..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 568999999999999999999999997732 257999999999888 9999999999999864
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.++++.|+.+|.++++.++..++++|+.+.. .+.++.|+.++ .++++.++..++++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 2578999999999999999999999999842 23678888888 78889999999999999853
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
...++.|..++.++++.++..++++|+.+.. ..+++.|..++.++++.++..|..+|+++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2578999999999999999999999999843 23467788888889999999999999999
Q ss_pred hcCCh
Q 016714 314 VTGDD 318 (384)
Q Consensus 314 ~~~~~ 318 (384)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76543
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.56 E-value=2.7e-14 Score=146.38 Aligned_cols=273 Identities=17% Similarity=0.198 Sum_probs=197.2
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-H---HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDE-V---IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS 150 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~ 150 (384)
.++.+++.+.++++..+..++.+|..++... .+.... . .-.+++|.|++++.+++ +.++..|+++|.++....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 5788889999999999999999999887542 111110 0 01246788888888877 9999999999998887544
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
......+ .+.++.+..++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 3221111 246788888899999999999999999999765532111111 3566677776 567888999999999999
Q ss_pred hcCCCCCC--hhhhhchHHHHHHhhc-----------c-----------CCHhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 016714 231 CRGKPPTP--FEQVKPALPILQRLIH-----------L-----------NDEEVLTDACWALSYLSDGPNDKIQAVIEAG 286 (384)
Q Consensus 231 ~~~~~~~~--~~~~~~~~~~L~~lL~-----------~-----------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g 286 (384)
+....... ......++|.+...+. . .+..++..+..++..++....+. +. ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 97531100 1123466777777762 2 12346888888888887643321 11 24
Q ss_pred ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 287 VCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+++.+...+.++++.++..|++++|+++.+..+.....+ .++++.+...+.++ ++.+|..|+|++++++.
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 678888888999999999999999999988776544322 46889999999988 99999999999999996
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.53 E-value=3.3e-13 Score=128.20 Aligned_cols=276 Identities=15% Similarity=0.191 Sum_probs=193.7
Q ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCc
Q 016714 74 ESIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTS 150 (384)
Q Consensus 74 ~~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~ 150 (384)
+.++.++..+.++ ++..+..|+..|..++........... -..+++.++.+|.++. ++.++..|+++++++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578899999988 899999999999998753211111111 1247888999998872 38999999999999765322
Q ss_pred hhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714 151 EHTR-VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228 (384)
Q Consensus 151 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 228 (384)
+... .....-+++.+...+.++++.++..++++|..++...+. +...+ ..++++.++..+ .+.+..++..+++.+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAM-KSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHH-HCSSHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-cCCchHHHHHHHHHHH
Confidence 1110 001111466777778888999999999999999865442 12211 114566666666 5667889999999988
Q ss_pred hhhcCC-------------------CCCCh--hhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHH
Q 016714 229 NFCRGK-------------------PPTPF--EQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQ 280 (384)
Q Consensus 229 ~L~~~~-------------------~~~~~--~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~ 280 (384)
.++... +.... .....++|.++..+.. ++..++..++.+|..++....+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~-- 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-- 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH--
Confidence 888641 11111 1125677777777743 23578999999999988654321
Q ss_pred HHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 281 AVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 281 ~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+. ..+++.+...|.+++..++..|+.++|.++.+.. +.....+ ..+++.+...+.++ ++.+|..|+|+|++++.
T Consensus 363 -~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 363 -IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICE 437 (462)
T ss_dssp -HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 11 2467888889999999999999999999998654 2211112 46899999999998 89999999999999996
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.53 E-value=5.5e-13 Score=112.19 Aligned_cols=184 Identities=19% Similarity=0.183 Sum_probs=157.2
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+..+.+++.|.++++.++..|++.|..+-. .+.++.|+++|.+++ +.++..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 356899999999999999999999997632 246899999999888 9999999999999854
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.++++.|+.+|.++++.++..|+++|+.+.. ...++.|+..+ .+.++.++..++++|..+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 2578999999999999999999999999842 13677888888 77789999999999999854
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
...++.|..++.++++.++..++++|+.+.. + ..++.|..++.++++.++..|..+|+.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999832 2 2467888888889999999999999987
Q ss_pred h
Q 016714 314 V 314 (384)
Q Consensus 314 ~ 314 (384)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.53 E-value=1.6e-13 Score=134.70 Aligned_cols=274 Identities=17% Similarity=0.154 Sum_probs=192.2
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
-.++.+.+.++++++.++..|++++.++.. .+-.. .++|.+..+|.+++ +.++..|+++++++...+++..
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc
Confidence 356677777888899999888888876632 22222 24778999999888 9999999999999988666533
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.+.+.++.|..+|.++++.++..|+++|+.++.+++..+......+.+..|+..+ ...++..+..++.++..++..
T Consensus 157 ---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 157 ---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp ---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC
T ss_pred ---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC
Confidence 2346789999999999999999999999999987764311111223466677777 445666677777777777633
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
.......+++.+..++++.++.++..|++++.++... +++....+. ..+.+.|+.++. +++.++..|+.+|
T Consensus 233 ----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l 306 (591)
T 2vgl_B 233 ----DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNI 306 (591)
T ss_dssp ----SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHH
Confidence 1233467888999999999999999999999999752 233333322 345667776654 6788888899888
Q ss_pred HHhhcCChHH------------------H----HHHH---Hc----CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714 311 GNIVTGDDAQ------------------T----QFVI---DN----GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR 361 (384)
Q Consensus 311 ~nl~~~~~~~------------------~----~~i~---~~----g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 361 (384)
+.++...++. . +.+. +. .+++.|...+.+. +..+|++++|++++++...+
T Consensus 307 ~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 307 NLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhCh
Confidence 8886421110 0 0111 11 2455666677677 88999999999999998655
Q ss_pred HHHHHH
Q 016714 362 AQIQVH 367 (384)
Q Consensus 362 ~~i~~l 367 (384)
...+.+
T Consensus 386 ~~~~~~ 391 (591)
T 2vgl_B 386 QSAERC 391 (591)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 433333
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.45 E-value=2.1e-12 Score=126.54 Aligned_cols=267 Identities=11% Similarity=0.089 Sum_probs=199.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.++..++++++.++..|+..+..+...-............++|.+..++++++ +.++..++++|+.++..-.. .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence 46777788888888999999999988876542222222334567899999999888 99999999999998752111 1
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
......+|.+..++.+++++++..++.+|+.++..... +. .....++.+...+ .+.+..++..++.++..++..-
T Consensus 359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence 11234789999999999999999999999988753321 11 1233667777777 6677888999999999888642
Q ss_pred CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
+.. .....++|.+..+|.+++..++..++.+++.++...... .....+++.|..++.+++..++..++++++.++
T Consensus 434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 211 122467899999999999999999999999987642221 123467888998888889999999999999997
Q ss_pred cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
..... ......+++.|...+.++ ++.+|..++|+++.++.
T Consensus 509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGG
T ss_pred HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHH
Confidence 53221 123346889999999988 89999999999999996
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.43 E-value=5.5e-12 Score=123.49 Aligned_cols=265 Identities=17% Similarity=0.153 Sum_probs=196.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.+...+.++++.++..|+..+.++.... +. ..+...++|.+..+..+++ +..+..|+.+++.++...+..
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~--~~--~~~~~~l~~~l~~l~~~~~-~~~R~~a~~~l~~~~~~~~~~-- 160 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEH--SP--SDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS--CH--HHHHHTHHHHHHHHHTCSS-HHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHC--CH--HHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCHH--
Confidence 3566666667888999999999999997643 21 2233456777777777766 899999999999988754432
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
. ...+++.+..++.++++.++..++.+|+.++...+. + ......++.+..++ .+.+..++..++.+|..++...
T Consensus 161 -~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 161 -V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--D-NVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp -H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--H-HHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHS
T ss_pred -H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--H-hHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhC
Confidence 1 234678888899999999999999999999865432 1 12234677777777 6667889999999999988753
Q ss_pred CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
+. ......++|.+..++.++++.++..++.+++.++...... .....+++.+..++.++++.++..|+.+++.++
T Consensus 235 ~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 235 PQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 21 2334668889999999999999999999999997642211 123467899999999999999999999999998
Q ss_pred cCChHH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 315 TGDDAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 315 ~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
...... ........++|.+..++.++ ++.+|..++|+|+.++.
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP 353 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 653321 11122235778888888877 78888888888888875
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.42 E-value=1.6e-11 Score=120.43 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=186.6
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
..++.+++.+++++..++..+...+..++... + +. . .-+++.+.+-|.+++ +.++..|+.+|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~--e~-~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--P--DM-A-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--H--HH-H-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--c--hH-H-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 35688889999999999888877777765421 1 11 1 235678888888888 9999999999999863 4433
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.. .++.+..++.++++.++..|++++++++..++. .+...+.++.+..+| .+.++.++.+|+++|..++..
T Consensus 120 ~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 32 357889999999999999999999999976654 233346778888888 688899999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 234 KPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 234 ~~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
.+.. ......+.++.|+..+...++..+..++.+++.++..++.... .+++.+..+|.+.++.++..|+++++.
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6543 2333356677788888888999999999999999866554332 457888889999999999999999999
Q ss_pred hhcC---ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 313 IVTG---DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 313 l~~~---~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+... +++..+.+. ..+.+.|+.++. + ++.+|..|+.++..++.
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQ 311 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHH
Confidence 8742 233332222 123344444332 3 44555555555555543
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.39 E-value=6.3e-11 Score=116.71 Aligned_cols=257 Identities=16% Similarity=0.110 Sum_probs=179.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
....+++.+.+++...+.-+.-.+..++.. ++.... -+++.|.+-|.+++ +.++..|+++|+++.. ++
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~--- 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SE--- 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HH---
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HH---
Confidence 567788888999988888777777777543 221111 24778888888888 8999999999999974 33
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
+. ...++.+..+|.++++.++..|+.+++++....|... .+.++.+..++ .+.++.++..++++|..++...
T Consensus 139 -~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 139 -MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp -HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred -HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence 22 2467888999999999999999999999987665432 14667777777 6778899999999999998764
Q ss_pred CCCChhhhhchHHHHHHhhcc---------------CCHhHHHHHHHHHHHhccCChHHHHH-------HH---------
Q 016714 235 PPTPFEQVKPALPILQRLIHL---------------NDEEVLTDACWALSYLSDGPNDKIQA-------VI--------- 283 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~---------------~~~~i~~~a~~~l~~l~~~~~~~~~~-------~~--------- 283 (384)
+.. ......++|.++.+|.. .++..+..++.+|+.++..+++.... +.
T Consensus 211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence 321 22335667766666542 46777777888887777654321110 00
Q ss_pred -------------H--------cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCc
Q 016714 284 -------------E--------AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK 342 (384)
Q Consensus 284 -------------~--------~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~ 342 (384)
. ..++..|..+|.++++.++..|+.+|+.++...+... ....+.+...+.++ +
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d 363 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-D 363 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-C
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-C
Confidence 0 0245677777888888899999999998886544322 12445666667666 6
Q ss_pred hhHHHHHHHHHHHHhc
Q 016714 343 KSIKKEACWTISNITA 358 (384)
Q Consensus 343 ~~v~~~a~~~L~nl~~ 358 (384)
..+|+.|..+|..++.
T Consensus 364 ~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 364 VSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHcc
Confidence 7777777777777775
No 55
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.38 E-value=8.5e-12 Score=124.16 Aligned_cols=215 Identities=14% Similarity=0.128 Sum_probs=158.6
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHhhhCC-CCch
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV-QLLSSGSDDVREQAVWALGNVAGD-SPSC 194 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~~ 194 (384)
.++| +++.|++++ +..|..|+++|+||+. ++..+..+...|++..++ .+|.+++.+++..|+++|+||+.+ ++..
T Consensus 35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3444 567789888 8999999999999998 588888899989887765 578889999999999999999965 4567
Q ss_pred hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
.+.+...|++++|..++.. ....+..+........ ......+ .++...++++|++|+.+
T Consensus 112 ~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHh---------hHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence 7888899999999999832 1222222222110000 0001111 23455677888889888
Q ss_pred ChHHHHHHHHcCChHHHHHhcCC---CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchH---HHHHHhccCCchhHHHH
Q 016714 275 PNDKIQAVIEAGVCPRLVELLMH---PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLP---CLYQLLTQNHKKSIKKE 348 (384)
Q Consensus 275 ~~~~~~~~~~~g~~~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~---~L~~ll~~~~~~~v~~~ 348 (384)
+......+...+.++.|+..|.+ ....++..|+.+|.+++..++...+.+.+.+... .+..+.. . ....+..
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~l 248 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVM 248 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHH
Confidence 88888888888999999999843 2457999999999999999999988888876533 3333333 3 3456889
Q ss_pred HHHHHHHHh
Q 016714 349 ACWTISNIT 357 (384)
Q Consensus 349 a~~~L~nl~ 357 (384)
+|+++.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 999999985
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.36 E-value=2.3e-11 Score=124.78 Aligned_cols=274 Identities=19% Similarity=0.249 Sum_probs=193.8
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPID-EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
++.+...+.++ +..++..|+.++..++..- ..... ......+++.+...+.+++ ++++..++++|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 44455666665 5789999999999887531 11110 1111236777888887777 899999999999998866655
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC------------------chhhHHH--hcCChHHHHHHhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP------------------SCRDLVL--SSGALMPLLAQLN 212 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------------------~~~~~i~--~~g~i~~L~~~l~ 212 (384)
....+...+++.++..+.+.++.++..+++++.+++.... ....... -...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 4455544678888888888899999999999998874310 0001100 0224666777774
Q ss_pred c------cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHc
Q 016714 213 E------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEA 285 (384)
Q Consensus 213 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~ 285 (384)
. +.+..++..+..+|..++...+ ...+..++|.+...+.+.++.++..++++++.++.+.. +...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2245688888899988887543 13356778888888889999999999999999998754 3333322 3
Q ss_pred CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 286 GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT--QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 286 g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+++.++..|.++++.++..|++++++++...+... ...+ ..+++.+...+.++ +.++..|+|++++++.
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999987543211 0111 24677788888663 7899999999999985
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.33 E-value=4.6e-11 Score=122.61 Aligned_cols=277 Identities=15% Similarity=0.178 Sum_probs=193.2
Q ss_pred CHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCch
Q 016714 75 SIPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 75 ~l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.++.++..+.++ ++..+..++.++..++..- .+..-.-.-..+++.+...+.+++ ++.++..|+++|++++..-..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888 8999999999999887532 111000012346777888887762 389999999999998763221
Q ss_pred hH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 152 HT-RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 152 ~~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
.. ........++.+...+.+++.+++..++.+|+.++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0111112577777888888999999999999999865543212222224667777766 566778888999888888
Q ss_pred hcCC-------------------CCCCh--hhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHHHH
Q 016714 231 CRGK-------------------PPTPF--EQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQAV 282 (384)
Q Consensus 231 ~~~~-------------------~~~~~--~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~~~ 282 (384)
+... +.... .....++|.++..+.. +++.++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7531 11111 1225677777777742 34678899999999887643321 1
Q ss_pred HHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 283 ~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
+ ..+++.+...+.++++.++..|++++|.++.+.. +.....+ ..+++.+...+.++ ++.+|..|+|++++++..
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 1 2457778888888999999999999999998754 4333333 35889999999988 899999999999999973
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.30 E-value=2.1e-11 Score=124.86 Aligned_cols=274 Identities=12% Similarity=0.148 Sum_probs=188.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh--H
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH--T 153 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~--~ 153 (384)
++.+...+.+.++..+..|+.++..++.+.........+. .+++.++..+.+++ +.++..++|+|+.++..-... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 3445556678889999999999998875431122222222 57899999998887 999999999999998631110 0
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-----CchhhHHHhcCChHHHHHHhcc-cchhHHHHHHHHHH
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-----PSCRDLVLSSGALMPLLAQLNE-HSKLSMLRNATWTL 227 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~i~~~g~i~~L~~~l~~-~~~~~~~~~a~~~L 227 (384)
.... ..+++.++..+.++ +.++..|+|+|++++... ......+ ..+++.|+..+.. +.+..++..+++++
T Consensus 449 ~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0111 13578888888775 899999999999997532 2122222 2256677777743 33467899999999
Q ss_pred hhhhcCCCCCChhhhhchHHHHHHhhccC---------------CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 016714 228 SNFCRGKPPTPFEQVKPALPILQRLIHLN---------------DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV 292 (384)
Q Consensus 228 ~~L~~~~~~~~~~~~~~~~~~L~~lL~~~---------------~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~ 292 (384)
..++...+.........++|.++..+... ...++..++.+|..++........... ..+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHH
Confidence 99998765444444566777777766531 345778899999998865443221111 24677788
Q ss_pred HhcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 293 ELLMHPSA-TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 293 ~lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
..+.+.+. .++..++.+++.++..........+. .+++.+...+.+. ++.++..|+++++.++.
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence 88877766 89999999999998654333222232 3788899999776 78899999999999986
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.29 E-value=4.8e-11 Score=122.25 Aligned_cols=272 Identities=18% Similarity=0.195 Sum_probs=190.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPID-EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
++.+...+.++ ++.++..|+.++..++..- ..... ......+++.+..++.+++ +.++..++.+|..++...++.
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666 7889999999999875421 10000 0011235777778887777 899999999999998754443
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-----------------c-hhhHHHhcCChHHHHHHhccc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-----------------S-CRDLVLSSGALMPLLAQLNEH 214 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------~-~~~~i~~~g~i~~L~~~l~~~ 214 (384)
....+...+++.+...+.+.++.++..|+.++..++.... . .+.. . ..+++.++..+...
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-I-KDVVPNLLNLLTRQ 336 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-H-HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-H-HHHHHHHHHHHHhc
Confidence 3333332567778888888999999999999999875321 0 1111 1 23567777777432
Q ss_pred ------chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHcCC
Q 016714 215 ------SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEAGV 287 (384)
Q Consensus 215 ------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~g~ 287 (384)
.+..++..+..+|..++...+ ......++|.+...+.+.++.++..++++++.++.+.. ......+. .+
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~i 412 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QA 412 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HH
T ss_pred ccccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 234678889999988887533 23345677888888888999999999999999998753 43333333 57
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT--QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++.++..+.++++.++..+++++|.++....... ... -..+++.+...+.+. +.++..|+|++.+++.
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999985421110 001 123577788888654 7899999999999986
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.27 E-value=4e-11 Score=118.09 Aligned_cols=255 Identities=16% Similarity=0.092 Sum_probs=182.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+..+.+.|+++++.++..|++++.++.. + .+. ..+++.+..+|.+++ +.++..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 56777888889999999999999998842 1 222 346888999999988 99999999999999887665432
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------------cchhHHH
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------------HSKLSML 220 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------------~~~~~~~ 220 (384)
+.++.+..+|.+.++.++..|+++|+.++..++.....+. ..++.++..|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 6788899999999999999999999999877653212221 355666655532 1244445
Q ss_pred HHHHHHHhhhhcCCCCC--------------------------------------ChhhhhchHHHHHHhhccCCHhHHH
Q 016714 221 RNATWTLSNFCRGKPPT--------------------------------------PFEQVKPALPILQRLIHLNDEEVLT 262 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~--------------------------------------~~~~~~~~~~~L~~lL~~~~~~i~~ 262 (384)
..++.+|..++...|.. .......+++.|..+|.+++++++.
T Consensus 252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence 55555555555432110 0011123556677778888888888
Q ss_pred HHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCc
Q 016714 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK 342 (384)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~ 342 (384)
.++.+|..++...+.. + ......++..|.+++..++..|+.++..++.... .+. +++.|...+.+. +
T Consensus 332 ~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d 398 (618)
T 1w63_A 332 VALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-E 398 (618)
T ss_dssp HHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-C
Confidence 8888888887543321 2 2346788888999999999999999999987533 222 345677777777 8
Q ss_pred hhHHHHHHHHHHHHhc
Q 016714 343 KSIKKEACWTISNITA 358 (384)
Q Consensus 343 ~~v~~~a~~~L~nl~~ 358 (384)
.++|.+++.+++.++.
T Consensus 399 ~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 399 PEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999996
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.20 E-value=1e-10 Score=124.38 Aligned_cols=271 Identities=14% Similarity=0.139 Sum_probs=197.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.++..+.+.|++.+..|...|.+.+... ......-....+++.+++.|.+++ +.+|..|+.+|+.++...++
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH---
Confidence 4788999999999999999999999877543 111111112346888999998777 99999999999999876444
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch------hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC------RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 228 (384)
..+ ..+++.|+..+.++++.+|..|+.+|+.++...... ... .-...++.|+..+.++.+..++..++.+|.
T Consensus 82 ~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 82 YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 111 236788888888888899999999999998543321 111 122367888888843567889999999999
Q ss_pred hhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHH
Q 016714 229 NFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPAL 307 (384)
Q Consensus 229 ~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~ 307 (384)
.++...+..-......+++.+...|.++++.++..++.+|+.++....+.. -..+++.++..|.+. +..++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHH
Confidence 999643332223447788889999999999999999999999997654321 124577788777543 346778889
Q ss_pred HHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 308 RTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 308 ~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+++.++...+......+ ..+++.+...+.+. ++.+|..+.+++..++.
T Consensus 236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 999998765433211111 36889999999887 88999999999999986
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.20 E-value=6.3e-11 Score=112.39 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=166.1
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPID-EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
++.++..+.++ ++.++..|++++..++..- .+... .....-+++.+...+.+++ +.++..++++|..++...++.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777 6899999999999876421 10000 0111124677777777777 899999999999998755443
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC------------------CchhhHHH--hcCChHHHHHHhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS------------------PSCRDLVL--SSGALMPLLAQLN 212 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~------------------~~~~~~i~--~~g~i~~L~~~l~ 212 (384)
....+..++++.++..+.+.++.++..+++++..++... ......+. -...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 331 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence 222222256777888888899999999999999987531 00111110 0224566666663
Q ss_pred cc------chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHc
Q 016714 213 EH------SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEA 285 (384)
Q Consensus 213 ~~------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~ 285 (384)
.. .+..++..++.+|..++...+. .....++|.+...+.++++.++..++.+++.++.+.. +.....+ .
T Consensus 332 ~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~ 407 (462)
T 1ibr_B 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (462)
T ss_dssp CCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-T
T ss_pred hcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-H
Confidence 22 2346888999999999987542 3446788889999999999999999999999998654 2111111 4
Q ss_pred CChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714 286 GVCPRLVELLMHPSATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 286 g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (384)
.+++.++..|.++++.++..|+++|++++...
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999998643
No 63
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.12 E-value=1.4e-10 Score=115.50 Aligned_cols=194 Identities=12% Similarity=0.083 Sum_probs=144.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHhcC-Cchh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFV-EFLGRHDMPQLQFEAAWALTNVASG-TSEH 152 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~ 152 (384)
.+..+++.|+|+++..|..|+.+|.+++.. ......+...|++..++ .+|.+++ .+++.+|+++|.||+.+ .++.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCchH
Confidence 456788899999999999999999999852 56667788888888765 5677777 99999999999999864 4788
Q ss_pred HHHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714 153 TRVVIEHGAVPMFVQLLSSGS---------------------DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL 211 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~---------------------~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l 211 (384)
...+++.|++++|..++.... ..+.++++++|+++|..+....+.+...+.++.|+..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 899999999999999885310 24566788999999977776777788889999999988
Q ss_pred cccc--hhHHHHHHHHHHhhhhcCCCCCChhhh-h---chHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 212 NEHS--KLSMLRNATWTLSNFCRGKPPTPFEQV-K---PALPILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 212 ~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~-~---~~~~~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
.... ..++...++.+|..++...+....... . .++..+..+..+. ...+..+++.+.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHh
Confidence 4332 467999999999999997533222222 1 1233333333333 334667778887763
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.10 E-value=4.2e-08 Score=96.40 Aligned_cols=267 Identities=14% Similarity=0.141 Sum_probs=179.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
.....+++.+.+++...+.-+.-.+..++..+ + +.++ =+++.+.+=|.+++ +.++-.|+++|+++.. ++
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e-- 142 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRN-PTFMGLALHCIANVGS--RE-- 142 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HH--
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HH--
Confidence 35788899999999988888888887765432 2 2111 13667777788888 9999999999999965 44
Q ss_pred HHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 154 RVVIEHGAVPMFVQLL--SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
+.+ ..++.+..++ .+.++.|+..|+.++.++....|.. +-..+.++.+..+| .+.++.++.+++.++..++
T Consensus 143 --~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 143 --MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp --HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred --HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 222 4678889999 8899999999999999998766532 22246788888888 7788899999999999998
Q ss_pred cCCCCCChhhhhchHHHHH----HhhccC-------------CHhHHHHHHHHHHHhccCC-hHHHHH-------HH---
Q 016714 232 RGKPPTPFEQVKPALPILQ----RLIHLN-------------DEEVLTDACWALSYLSDGP-NDKIQA-------VI--- 283 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~----~lL~~~-------------~~~i~~~a~~~l~~l~~~~-~~~~~~-------~~--- 283 (384)
...+. .....+|.++ +++... ++..+...+..+..++..+ ++.... ++
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 76432 1122333322 222211 4555666666655555421 111110 00
Q ss_pred -----------------------------------HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 016714 284 -----------------------------------EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG 328 (384)
Q Consensus 284 -----------------------------------~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g 328 (384)
-..++..|..+|.+.++.++..|+.+|..++...+.. . ++ ..
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~ 368 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KT 368 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HT
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HH
Confidence 0124566677777778888888888888887655321 1 22 23
Q ss_pred chHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 329 VLPCLYQLLT-QNHKKSIKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 329 ~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
..+.++..+. ++ +..+|..|.-++..++. +..++.++
T Consensus 369 ~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~Iv 406 (621)
T 2vgl_A 369 HIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQIV 406 (621)
T ss_dssp THHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHHHH
T ss_pred HHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHHHH
Confidence 5667778888 77 88999999999998884 34444443
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.90 E-value=3.6e-07 Score=89.77 Aligned_cols=218 Identities=16% Similarity=0.151 Sum_probs=154.4
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----CC-------------CHHHHHH
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----SG-------------SDDVREQ 179 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~~-------------~~~v~~~ 179 (384)
+.++.+.++|.+++ +.++..|+.+|..++..+++.-. ..+|.++..|. .. ++-.+..
T Consensus 187 ~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 187 DWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp SCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred hHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 78999999998877 99999999999999886554211 23444444332 21 6788999
Q ss_pred HHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhc--------ccchh--HHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 016714 180 AVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLN--------EHSKL--SMLRNATWTLSNFCRGKPPTPFEQVKPALPI 248 (384)
Q Consensus 180 a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~--------~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 248 (384)
.+..|+.++.. ++..++.+.+ .+..++..+. ++.+. .+.-.++.++..+.. .......++..
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~ 333 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQ 333 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHH
Confidence 99999998863 3444443332 3334443321 12233 677788888887752 23455678888
Q ss_pred HHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714 249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDAQTQFVIDN 327 (384)
Q Consensus 249 L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 327 (384)
|..+|.+++++++.-++.+|..++...+. ...+ ......++..|. +++..++..++.++..++. +.....
T Consensus 334 L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~---- 404 (621)
T 2vgl_A 334 LGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ---- 404 (621)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH----
Confidence 99999999999999999999999877542 1122 245778888888 8899999999999999984 344443
Q ss_pred CchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 328 GVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++..|...+... +.+++.+++..++.++.
T Consensus 405 -Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 405 -IVAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp -HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 344577777777 78899998888888874
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.88 E-value=9.4e-07 Score=70.04 Aligned_cols=216 Identities=15% Similarity=0.183 Sum_probs=165.4
Q ss_pred HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCc
Q 016714 115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
+..++..++.+|+++- ..++..|+.++.+++...++.....+ ..|+.+++ ++...+-.....++|.++.-.|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 4567899999998877 89999999999999998777655443 45666654 56777878888999999977764
Q ss_pred hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
.-+ +.+|.+..-+ .-.++.+..+..++|..+.+..| ....+++.-+..++.+.|..=+..++..|+.+..
T Consensus 104 ~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 211 2455555555 44589999999999999998765 3456777788889999887777777777777776
Q ss_pred CChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 274 GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 274 ~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
+....+ ...+|.|..+|.+.+.-++..|..+|++++..++.....+. .-+.=+.+. +..+++...-.|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHH
Confidence 665544 35689999999999999999999999999999988655333 234456666 778888888888
Q ss_pred HHHhc
Q 016714 354 SNITA 358 (384)
Q Consensus 354 ~nl~~ 358 (384)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87774
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.87 E-value=3.6e-07 Score=72.38 Aligned_cols=190 Identities=15% Similarity=0.225 Sum_probs=155.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC
Q 016714 158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237 (384)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~ 237 (384)
+...+..++.+|.++--.++.+|+..+.+++...|...+. .+..|+.++..+....+......++..++..+|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3457888999999888889999999999999888765443 345677777777778888889999999998755
Q ss_pred ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (384)
+.+.+.+|.+..-..-.|+.++.....+|..+...+++... +++.-+..+|.+++..-+..|+..++-+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 56788999999888889999999999999999988776543 45678888999888877888888888776544
Q ss_pred hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 318 DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 318 ~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
..... ..+|.|..+|.+. +.-+|..|+-+|.+++..++.....+
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 43332 5799999999999 99999999999999999888854433
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.87 E-value=9.9e-09 Score=109.23 Aligned_cols=275 Identities=13% Similarity=0.177 Sum_probs=185.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----cHHHHHHcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCC
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP----PIDEVIKAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGT 149 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~----~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~ 149 (384)
.++.++..+.++++.++..|+.++..++..-... ....-....++|.|+..+.+ ++ +.++..|+.+|+.++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 4567777777888888888999998887543111 01112234579999999984 65 899999999999998532
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
........ ...++.|+..+.++++.++..|+.+|+.++...+. .++ ...++.++..+....+...+..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 21111111 23567778888888999999999999999865432 122 23577888888554444566777888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC------------
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH------------ 297 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~------------ 297 (384)
++...+..-......++|.+...+..++++++..+++++..++........... ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887543322234478899999999988999999999999988865432211111 2244555544421
Q ss_pred -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHH
Q 016714 298 -------------------------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT 352 (384)
Q Consensus 298 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 352 (384)
....++..|+.+++.++...++....++ ..+++.+...+.+. ++.+|..+.-+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1134688899999999875443333333 45788888888777 78999999888
Q ss_pred HHHHhc
Q 016714 353 ISNITA 358 (384)
Q Consensus 353 L~nl~~ 358 (384)
+..+..
T Consensus 398 l~~l~~ 403 (1230)
T 1u6g_C 398 YLSLLK 403 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.85 E-value=2.4e-08 Score=86.24 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=140.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
+.+.+.+.+.++..+..|+..|..++.+...-....+ ..+++.|...+. +.+ ..++..|+.+|+.++..-......
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3577888999999999999999999876211000001 235778888884 777 899999999999998642222222
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-
Q 016714 156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK- 234 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~- 234 (384)
.+. .++|.++..+.+.+..+++.+..+|.+++...+ . + ..++.+...+ .+.++.++..++..|..+....
T Consensus 95 ~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence 222 478999999999999999999999999987543 2 1 2567788888 6678899999999999965543
Q ss_pred CC-CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 235 PP-TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 235 ~~-~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
+. ........++|.+..+|...+++++..|..+++.++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 32 2344557899999999999999999999999998864
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=1.5e-08 Score=87.56 Aligned_cols=186 Identities=12% Similarity=0.145 Sum_probs=141.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh
Q 016714 163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242 (384)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 242 (384)
+.+...+.+.+...|..++..|..++...+....... ..+++.|...+..+.+..++..++.++..|+..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4578888899999999999999999865322111001 124566777773367888999999999999975432223445
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHH-
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG-DDAQ- 320 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~- 320 (384)
..++|.+...+.+.+..++..+..++..++.... .. .+++.+...|.+.++.++..++..|+.+... .++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7889999999999999999999999999887543 11 3578899999999999999999999997544 3331
Q ss_pred HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
....+. .+++.|..++.+. ++.+|+.|.-+++.++.
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 222233 5889999999988 89999999999999996
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.83 E-value=7.6e-07 Score=89.25 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=168.1
Q ss_pred CHHHHHHHhcCCC--------HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714 75 SIPSMVQGVWSED--------PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA 146 (384)
Q Consensus 75 ~l~~lv~~l~s~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~ 146 (384)
.+..|...|.+++ +.++..|+..|.....++.++ .+++.|.+.|.+++ ...+..|+.+|+.+-
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~ 500 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCM 500 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 3555666666544 567777888887654443211 24677888888776 677788999999874
Q ss_pred cCCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHH
Q 016714 147 SGTSEHTRVVIEHGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW 225 (384)
Q Consensus 147 ~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~ 225 (384)
.|+... .++..|+..+ ...+..++..++.+|+.+....+. .++.+++.|....++-++..++.
T Consensus 501 vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~ 564 (963)
T 4ady_A 501 LGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAF 564 (963)
T ss_dssp TTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHH
T ss_pred cccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHH
Confidence 442211 1234444433 456889999999999998765543 56788888866777888888888
Q ss_pred HHhhhhcCCCCCChhhhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhH
Q 016714 226 TLSNFCRGKPPTPFEQVKPALPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVL 303 (384)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~ 303 (384)
++..-+.+..+ ...++.|++.+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.++
T Consensus 565 alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR 629 (963)
T 4ady_A 565 TIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVR 629 (963)
T ss_dssp HHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHH
T ss_pred HHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHH
Confidence 87755555322 23344344333 456788999999999998776542 355666654 57889999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362 (384)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 362 (384)
..|..++|.++.+++.. .+++.|..++.+. +..||..|+.+|+.+.+|+.+
T Consensus 630 ~gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 630 CGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999887632 2455677788888 999999999999999986444
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.82 E-value=2.6e-07 Score=76.32 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=151.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+..++.+|+..|+.++..|+..+.++++.- +.......-..++|.++.++.+.| ..+...|++||..+..+.+-.-+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence 5678889999999999999999999999863 233334444567999999999888 99999999999999998776666
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
.+.. ++..|..++.++++-++..++..|+.+-.-++ ..+++..+.+++ .+.+..++..++.+|.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence 6665 57889999999999999999999999932222 123567788888 8899999999999999999865
Q ss_pred CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
..+ .....++.-+-.+|.+.|+.++..|+.++-.+...+
T Consensus 182 ~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 182 ADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 322 334566667778899999999999999999887663
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.1e-07 Score=82.33 Aligned_cols=190 Identities=12% Similarity=0.161 Sum_probs=139.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHH-HhcCCchhHHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHhhhCCC--Cchh-
Q 016714 122 FVEFLGRHDMPQLQFEAAWALTN-VASGTSEHTRVVIE-HGAVPMFVQLL-SSGSDDVREQAVWALGNVAGDS--PSCR- 195 (384)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~~- 195 (384)
+.+.+.+.+ +.-|.+|+..|.. ++.+.+.....-.+ ...+..|...+ .+.+..++..|+.+|+.|+.+- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 556677777 8999999999999 87543332100001 13467778888 6889999999999999998432 2232
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
..... .++.++..+ .+....++..+..++..++...+.... .....+++.|...|.+.++.++..++.+|..++..
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 22222 678888988 566678888888899888885422111 12567889999999999999999999999998865
Q ss_pred Ch---HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 275 PN---DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 275 ~~---~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
.. ......+...+++.|.+++.+.++.++..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44 333233335789999999999999999999999999874
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.74 E-value=1.9e-09 Score=83.69 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=93.8
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714 116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
...++.++.+|++++ +.++..|+++|+.+.. ..++.|+.+|.++++.++..|+|+|+++..
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 456888999999888 8999999999987643 136899999999999999999999999852
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL 271 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l 271 (384)
...++.|+..+ .+.++.++..++|+|..+.. ...++.|..++.++++.++..++++|+.+
T Consensus 72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12478888888 67888999999999998863 35788999999989999999999998753
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.74 E-value=8.2e-07 Score=80.08 Aligned_cols=253 Identities=11% Similarity=0.060 Sum_probs=163.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
..+.+++.++++|...+.-..-.+..+... .++.+ =+++.|.+=+++++ +-++-.|+++|++|... +..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence 356778899999998888887777766443 12222 25778888888988 99999999999999873 3222
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
...+.+...|.+.++-|+..|+.+...+....|+. + .++++.+-+++ .+.++.++.+++.+|..++..+
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 24567888889999999999999999999887753 2 25888888888 7778888899999999998763
Q ss_pred CCCChhhhhchHHHHHHhhccC---CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 235 PPTPFEQVKPALPILQRLIHLN---DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~---~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
...+..++..+... ++..+...++.+..++..++.. ....+++.+..+|++.++.|.-.|+++|.
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHT
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11334444444332 5667777777776666554111 22456888999999999999999999999
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~ 366 (384)
.+...... +. ..+...|..++.++ ++.+|=.|...|..++...|+.++.
T Consensus 276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~ 324 (355)
T 3tjz_B 276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA 324 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------
T ss_pred hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH
Confidence 98652222 11 23456677778888 8899999999999998877776553
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.74 E-value=1.9e-07 Score=84.17 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=139.2
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
-....+.+.++++++-++-.|++.+.++... +-.+. +.+.+.+.|.+.+ |-++..|+.+...+....++..
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH
Confidence 3578888999999999999999999999653 33333 4667888888888 9999999999999988776643
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--hhHHHHHHHHHHhhhh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFC 231 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~L~ 231 (384)
+ +.++.+-.++.+.++-++.+|+.+|..+...+.. .+..|+..+.... ++-.+...+..+..++
T Consensus 175 ----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 175 ----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp ----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred ----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence 3 6789999999999999999999999999865421 3445566553322 3433344444444444
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
..+ .......+++.+...|++.++.|..+|+++|..+...+... . ..++..|..+|.++++.++-.|++.|.
T Consensus 241 ~~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 241 EDE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred ccc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 432 11233567788888899999999999999999986533221 1 234667777788899999999999999
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
.++...+...+. .-.-+..++.++ +..+.-.|.-+|
T Consensus 313 ~l~~~~P~~v~~-----~n~~ie~li~d~-n~sI~t~Aittl 348 (355)
T 3tjz_B 313 KVAMKHPSAVTA-----CNLDLENLVTDA-NRSIATLAITTL 348 (355)
T ss_dssp ------------------------------------------
T ss_pred HHHHHCcHHHHH-----HHHHHHHHccCC-cHhHHHHHHHHh
Confidence 999877755442 333467788888 777766665544
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.9e-07 Score=80.76 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=143.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHh-hhCCCCchhhHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-CCCh-
Q 016714 164 MFVQLLSSGSDDVREQAVWALGN-VAGDSPSCRDLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PTPF- 239 (384)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~-~~~~- 239 (384)
.+...+.+.+..-|..++..|+. ++.+.+.......+ ...+..|...+..+.+..++..++.+|..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788899999999999999 87544332200001 12455666777567788889999999999997644 3333
Q ss_pred hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-
Q 016714 240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD- 318 (384)
Q Consensus 240 ~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~- 318 (384)
.....++|.++..+......++..+..++..++...+.....-.-..+++.|...|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 4567889999999998889998888888877775431100000001257888999999999999999999999986544
Q ss_pred --HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHH
Q 016714 319 --AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQ 363 (384)
Q Consensus 319 --~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~ 363 (384)
......+...++|.|.+++.++ ++.+|..|.-+++-++. |....
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3333344357999999999998 99999999999999985 65443
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.73 E-value=7e-07 Score=89.48 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=166.6
Q ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 016714 75 SIPSMVQGVW---SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-------MPQLQFEAAWALTN 144 (384)
Q Consensus 75 ~l~~lv~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~n 144 (384)
++..+-+.|. ++++.++..|+..+.-+-++.. .. ++..|.+.|.+++ .+.++..|+..|+.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3455555555 5667788888888886655431 11 4667777776543 26788899999999
Q ss_pred HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHH
Q 016714 145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT 224 (384)
Q Consensus 145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~ 224 (384)
+..|+.. ..+++.|..++.+++..+++.|+.+||-+..+.... .++..|+..+....+..+++.++
T Consensus 464 a~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHH
Confidence 8765431 125677888888877778889999999885444321 14566777665666778999999
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhc-cCCHhHHHHHHHHHHH--hccCChHHHHHHHHcCChHHHHHhc-CCCCh
Q 016714 225 WTLSNFCRGKPPTPFEQVKPALPILQRLIH-LNDEEVLTDACWALSY--LSDGPNDKIQAVIEAGVCPRLVELL-MHPSA 300 (384)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l~~--l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~ 300 (384)
.+|..+.-+.+ ..++.++..|. +.++.++..++.+++- .-.++... ++.|++.+ .+.+.
T Consensus 530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 99998877643 45666666664 5678888888777654 33444433 34344443 46678
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHH
Q 016714 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN--RAQIQVH 367 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~i~~l 367 (384)
.++..|+..||.|..++++ .++.++.++.+..++.+|..|+|+|+.+++|+ ++.++.|
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 8999999999999887763 34455555544449999999999999999854 4445433
No 79
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.69 E-value=6.1e-07 Score=74.14 Aligned_cols=187 Identities=18% Similarity=0.167 Sum_probs=147.7
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
+.+..|..+|...| +.++..|+.+|..+...-+.......-...++.++.++.+.++.+.-.|+.+|..+..+.|--..
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46888999998888 99999999999999886444444444446899999999999999999999999999988775434
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~ 276 (384)
.+.. .+..|...+ ..++.-+..+++-.+.-+.-. .....++..+..++.+.|..++..++.++.+++....
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQPL------EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCcc------cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3333 566778888 477777888999888888211 2235677788899999999999999999999987643
Q ss_pred HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 277 ~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
+.- +-.+++.-+-.+|+++++.++..|+.++-.+.+.
T Consensus 183 D~~---i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSG---HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCC---CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 211 1135677888899999999999999999999875
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.65 E-value=7.3e-09 Score=80.40 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=93.8
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCC
Q 016714 159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238 (384)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~ 238 (384)
.+.++.++.+|.++++.++..|+++|+++... .++.|+..| .++++.++..++|+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence 45788899999999999999999999987321 257888888 67889999999999998864
Q ss_pred hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
...++.|..+|.++++.++..++++|+.+.. ...++.|..+|.++++.++..|+++|+.|
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3568899999999999999999999999852 12468899999999999999999998864
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.44 E-value=6.1e-06 Score=76.22 Aligned_cols=234 Identities=14% Similarity=0.110 Sum_probs=157.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhcC-----------------CCHHHHHHHH
Q 016714 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLSS-----------------GSDDVREQAV 181 (384)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~-----------------~~~~v~~~a~ 181 (384)
.++..|......+.+..++.+|..+... ++.|..+.+.+ .+|.++.++.. ....++-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 3555555532256677899999998884 88898888643 36666554331 1356778889
Q ss_pred HHHHhhhCCCCchhhHHHhcCCh--HHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-----hh-hchHHHHHHhh
Q 016714 182 WALGNVAGDSPSCRDLVLSSGAL--MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-----QV-KPALPILQRLI 253 (384)
Q Consensus 182 ~~L~nl~~~~~~~~~~i~~~g~i--~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-----~~-~~~~~~L~~lL 253 (384)
.+++-++.+.+ ..+.+...+.. ..|+..+.....+.+.+-++.+|.|+....+..... .+ .++ +.++..|
T Consensus 250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999887765 44555555533 566777767778899999999999999875322111 11 233 4455555
Q ss_pred c---cCCHhHHHHHHHHHHHh-------ccC--------------Ch-HHHHHH--------H--HcCChHHHHHhcCC-
Q 016714 254 H---LNDEEVLTDACWALSYL-------SDG--------------PN-DKIQAV--------I--EAGVCPRLVELLMH- 297 (384)
Q Consensus 254 ~---~~~~~i~~~a~~~l~~l-------~~~--------------~~-~~~~~~--------~--~~g~~~~L~~lL~~- 297 (384)
. -+|+++..+.-.....| +.. ++ ..-+.+ . +..++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 3 35676665543332222 111 11 111111 1 11357889999963
Q ss_pred ---------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 298 ---------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 298 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.++.+..-||.=||.++...|.....+-+.|+=+.++.++.++ +++||.+|..|+.-+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3677888899999999999998888888889999999999999 99999999999987764
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.35 E-value=1.2e-05 Score=74.40 Aligned_cols=233 Identities=15% Similarity=0.161 Sum_probs=155.2
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc--CCHHHHHHhhcC--------------CC--ChHHHHHHH
Q 016714 79 MVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKA--GVVPRFVEFLGR--------------HD--MPQLQFEAA 139 (384)
Q Consensus 79 lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~--g~i~~Lv~lL~~--------------~~--~~~~~~~a~ 139 (384)
++..|.+ ++...+..+++++..++.. .+.+..+.+. +.+|.++.++.. ++ ..+++++++
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4444544 2345567788888888763 4555556543 346777654431 11 267899999
Q ss_pred HHHHHHhcCCchhHHHHHhcCCh--HHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc-----hhhHHHhcCChHHHHHHh
Q 016714 140 WALTNVASGTSEHTRVVIEHGAV--PMFVQLLSS-GSDDVREQAVWALGNVAGDSPS-----CRDLVLSSGALMPLLAQL 211 (384)
Q Consensus 140 ~~L~nl~~~~~~~~~~i~~~g~i--~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-----~~~~i~~~g~i~~L~~~l 211 (384)
.|+.-++.. ++....+...++. +.|+..++. ..+++...++.+|.|+....+. ..+.+...++ ++++..|
T Consensus 250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 999999985 6666667666643 566666664 6689999999999999976532 1223333334 5666666
Q ss_pred ccc--chhHHHHHHHHH---------------------HhhhhcCCCCCCh-h-----------hhhchHHHHHHhhcc-
Q 016714 212 NEH--SKLSMLRNATWT---------------------LSNFCRGKPPTPF-E-----------QVKPALPILQRLIHL- 255 (384)
Q Consensus 212 ~~~--~~~~~~~~a~~~---------------------L~~L~~~~~~~~~-~-----------~~~~~~~~L~~lL~~- 255 (384)
... .|+++....-+. .+....+.|.... . ....++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 432 355554433322 2222222222111 0 113567788899973
Q ss_pred ---------CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 256 ---------NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 256 ---------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
.|+.++.-||.=|+.++.+.+.....+-+.|+=..+++++.+++++|+..|+.|+.-+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999888777777778999999999999999999999999988754
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.12 E-value=0.00072 Score=68.75 Aligned_cols=264 Identities=13% Similarity=0.112 Sum_probs=178.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Cchh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG-TSEH 152 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~ 152 (384)
.+..+.+.+.+.... ..|+..+..++.... .++. +.+--+.+|.++..+.+.. ..++..|..++..+... +++.
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 456666666654333 778888888874331 2233 3333368999999988877 78988887777666553 2333
Q ss_pred HHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 153 TRVVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
. ..++|.|+..|.+. .-..+..|+.++..++...+..-... -..++|.+...+ -+..+++...+..++..+|
T Consensus 131 ~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 131 I-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR-MPELIPVLSETM-WDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp H-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH-HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred H-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh-ccchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence 3 23578899888754 57899999999999997654211111 123566777777 6778899999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
..-.+.+ +.+.+|.|++.+.+++. ...+...|+.-+.-.+-....+ +=.+|.|.+-|......++..++-++.
T Consensus 204 ~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 204 ETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence 7544433 36789999999987744 4555555555443322111111 113677888888888889999999999
Q ss_pred HhhcC--ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 312 NIVTG--DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 312 nl~~~--~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
|+|.- ++.....++ ..++|.+.+....-.+|++|+.|..++.-+.
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 99864 444444433 5788888888877668999988877777663
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.11 E-value=8.8e-05 Score=65.25 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=123.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
...+++.|++++......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++... .....-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence 467888888889899999999999977754 788999999999999999998887 89999999999999885 555555
Q ss_pred HH-hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh--------cC--ChHHHHHHhc--ccchhHHHHH
Q 016714 156 VI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS--------SG--ALMPLLAQLN--EHSKLSMLRN 222 (384)
Q Consensus 156 i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~--------~g--~i~~L~~~l~--~~~~~~~~~~ 222 (384)
++ ....|..+..++.+.+..+...|+..|..++..++.....+.+ .| ....|+.+|. ...|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 55 3457888888999889999999999999998766544333332 11 2667888884 2568888888
Q ss_pred HHHHHhhhhcCCC
Q 016714 223 ATWTLSNFCRGKP 235 (384)
Q Consensus 223 a~~~L~~L~~~~~ 235 (384)
+...+-.+..+-|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8777666555433
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.96 E-value=0.00013 Score=74.20 Aligned_cols=275 Identities=13% Similarity=0.141 Sum_probs=188.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc--hh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS--EH 152 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--~~ 152 (384)
.+..+++.+...+......++..+..++..+... ..+..+++..+.+.+.+.. .. +.|+.++..|+.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCC
Confidence 4566777777655566677888888877643111 1112367888888887755 23 889999999985321 12
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
.+.++- +.+|.++..+.+....++..|-.++-.++..-+... + ...++.|+..|...........++.++..|+.
T Consensus 89 ~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 89 VEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp THHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 233222 678999999888889999999888888875443221 1 33688899999555567888999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
..|......+..++|.+...+....+++...+..++..+|.. +...+ ...+|.|++.+.+++. ...++..|+
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~l~ 236 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHLLG 236 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHHHT
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHHhh
Confidence 643222233467888888888888999999999888888753 11112 2458999999987754 455666666
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHhC
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHDSF 370 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~~~ 370 (384)
.-+.-.. .....+. =+.|.|.+-|... ...+++.++-++.|+|. .+|..+...+..
T Consensus 237 ~~tfv~~-v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~ 294 (986)
T 2iw3_A 237 ATTFVAE-VTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK 294 (986)
T ss_dssp TCCCCSC-CCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred cCeeEee-ecchhHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence 6544322 1111111 1467788888877 78899999999999997 787777766543
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.87 E-value=0.00045 Score=60.81 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=126.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLV 198 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i 198 (384)
+..+++-|.+++ ......+++-|..+-..+.+....+++.+++..|+......+.+.+..++.||+++.......-..+
T Consensus 120 a~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 345666666666 6778889999998555568899999999999999999999999999999999999987644333333
Q ss_pred HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-----------hchHHHHHHhhc---cCCHhHHHHH
Q 016714 199 LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-----------KPALPILQRLIH---LNDEEVLTDA 264 (384)
Q Consensus 199 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-----------~~~~~~L~~lL~---~~~~~i~~~a 264 (384)
-....|..+..++. +.+..+.+.++..|..++...+....... ...++.|+.+|+ +.|.+++.++
T Consensus 199 s~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 34456777888884 57788999999999999887532211111 123568888997 7789999999
Q ss_pred HHHHHHhccCCh--H----HHHHHHHcCChHHHHHhcCCC
Q 016714 265 CWALSYLSDGPN--D----KIQAVIEAGVCPRLVELLMHP 298 (384)
Q Consensus 265 ~~~l~~l~~~~~--~----~~~~~~~~g~~~~L~~lL~~~ 298 (384)
+..|..+..+.+ + ....+-+.|+-..+...|...
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 988877665533 2 222233445445555556543
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.0004 Score=60.82 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=125.6
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHH-H-cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPI-DEVI-K-AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS 150 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~-~-~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~ 150 (384)
..|| +-+.|.|.++..+..|+..+.+++........ +... . ....+.+-..+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3456 66789999999999999999998864321111 1111 1 234556677887777 8999999999988875311
Q ss_pred h-----hHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHH
Q 016714 151 E-----HTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT 224 (384)
Q Consensus 151 ~-----~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~ 224 (384)
. ......-..++|.|+. .+.+....++..+..++..++...... .. .++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 1 1111122346788876 478888999999998888776432211 11 234455555 667788887777
Q ss_pred HHHhhhhcCC--CCC-ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 225 WTLSNFCRGK--PPT-PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 225 ~~L~~L~~~~--~~~-~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
..|..+.... ... ....+..+++.+..+|.+.|+.|+..|..++..+...
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7777665532 111 2233456777888899999999999999999887654
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.74 E-value=0.00093 Score=69.17 Aligned_cols=221 Identities=9% Similarity=0.048 Sum_probs=125.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CC-C--------cHHHHHHcCCHHHHHHhhcCC--CChHHHHHHHHHHHHHhcCCch
Q 016714 85 SEDPALQLEATTQFRKLLSIE--RS-P--------PIDEVIKAGVVPRFVEFLGRH--DMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~--~~-~--------~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
+.++..+..|+.++..++.+. .. . ....++.. .++..|.++ ..+-+|..|+|+++.++..-.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~----~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK----EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH----HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH----HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence 456778888888888886431 01 0 22222222 233344555 138999999999999987421
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-------Cc-hhhHHHh--cCChHHHHHHhccc----chh
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-------PS-CRDLVLS--SGALMPLLAQLNEH----SKL 217 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~-~~~~i~~--~g~i~~L~~~l~~~----~~~ 217 (384)
.+ .. ..+++.++..|.+++..++..|+++|.+++... +. .++.+.. ...++.|+.++... .+.
T Consensus 491 -~~-~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 491 -KA-QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp -HH-HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -HH-HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 12 22 246788888888888999999999999998631 11 1222211 11344455555332 111
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-----cCCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHH
Q 016714 218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH-----LNDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRL 291 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L 291 (384)
.....+..++..++...+.........+++.|...+. .+++.....++.+|+.++.. .++.... +...+++.+
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~ 646 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTF 646 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHH
Confidence 1223455555554443222222334455555555543 23567777888899888876 3333322 334567777
Q ss_pred HHhcCCCChhhHHHHHHHHHHhh
Q 016714 292 VELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
...|..........++.+++.+.
T Consensus 647 ~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 647 LTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhHHHHHHHHHHHH
Confidence 77776655556666666666554
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.73 E-value=0.0012 Score=68.23 Aligned_cols=217 Identities=11% Similarity=0.080 Sum_probs=123.3
Q ss_pred CCCChHHHHHHHHHHHHHhcCCchhHHHHHhc-----CChHH----HHHhhcCC---CHHHHHHHHHHHHhhhCCCCchh
Q 016714 128 RHDMPQLQFEAAWALTNVASGTSEHTRVVIEH-----GAVPM----FVQLLSSG---SDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 128 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----g~i~~----L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
+++ ...++.|+.+++.++.+...... .... ...+. ++..|.++ ++.++..|+|+++.++..-+ .
T Consensus 416 ~~~-w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~ 491 (960)
T 1wa5_C 416 SKN-WKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K 491 (960)
T ss_dssp --C-HHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H
T ss_pred chh-HHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H
Confidence 344 68899999999999863211100 0000 11122 23334555 89999999999999986532 1
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-------CCChhh----hhchHHHHHHhhccCC---H--h
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-------PTPFEQ----VKPALPILQRLIHLND---E--E 259 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~-------~~~~~~----~~~~~~~L~~lL~~~~---~--~ 259 (384)
+. . ...++.++..| .+++..++..|+++|.+++.... ...... ...+++.|..++.... . .
T Consensus 492 ~~-l-~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 492 AQ-L-IELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp HH-H-HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred HH-H-HHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 22 1 22567778887 45678899999999999997421 111222 2455556666666541 0 1
Q ss_pred HHHHHHHHHHHhcc----CChHHHHHHHHcCChHHHHHhc----CC-CChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCc
Q 016714 260 VLTDACWALSYLSD----GPNDKIQAVIEAGVCPRLVELL----MH-PSATVLIPALRTVGNIVTG-DDAQTQFVIDNGV 329 (384)
Q Consensus 260 i~~~a~~~l~~l~~----~~~~~~~~~~~~g~~~~L~~lL----~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~g~ 329 (384)
....++.+|..++. .-...... +++.|...+ .+ .++.....++.+|+.++.. .++.... +...+
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~ 642 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSM 642 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHH
Confidence 12344444444332 11122222 233333333 33 3556666789999998875 3333333 33357
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 330 LPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 330 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+|.+..++... ..+...++.-+++.+..
T Consensus 643 ~p~~~~iL~~~-~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 643 MPTFLTVFSED-IQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hHhhHHHHHHHHHHHHH
Confidence 78888888766 56677777666666653
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.58 E-value=0.00073 Score=70.05 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh---c--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHH
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL---S--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMP 206 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~ 206 (384)
...++.|+++++.++.+-..... ..++.++.++ . +.++.++..++|+++.++..-......+. .+++.
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 67899999999999886443221 2333333332 2 34899999999999998742111111111 14455
Q ss_pred HHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCC--hHHHHHH
Q 016714 207 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGP--NDKIQAV 282 (384)
Q Consensus 207 L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~--~~~~~~~ 282 (384)
|+..| + +.+...|++++.++|+..+..-......++..+..++.. -+...+..++.+++.++..- ++....+
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56555 2 678999999999999753211112234555556666666 35778888888888887642 2222221
Q ss_pred HH--cCChHHHHHhcCCC--ChhhHHH---HHHHHHHhhcC--C-----------hHHHHHHHHcCchHHHHHHhccC-C
Q 016714 283 IE--AGVCPRLVELLMHP--SATVLIP---ALRTVGNIVTG--D-----------DAQTQFVIDNGVLPCLYQLLTQN-H 341 (384)
Q Consensus 283 ~~--~g~~~~L~~lL~~~--~~~v~~~---a~~~l~nl~~~--~-----------~~~~~~i~~~g~l~~L~~ll~~~-~ 341 (384)
.. ..++..+..++... ++..... ++..|+.+..+ . ++....+ -..+++.+..++... .
T Consensus 627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~ 705 (971)
T 2x1g_F 627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVE 705 (971)
T ss_dssp HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccc
Confidence 11 12233333444433 2322333 44444444321 1 0011111 235788888877643 2
Q ss_pred chhHHHHHHHHHHHHhc
Q 016714 342 KKSIKKEACWTISNITA 358 (384)
Q Consensus 342 ~~~v~~~a~~~L~nl~~ 358 (384)
+..+.+.++++++.++.
T Consensus 706 ~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAIT 722 (971)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 56899999999999774
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.46 E-value=0.0072 Score=63.13 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=78.0
Q ss_pred HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--
Q 016714 222 NATWTLSNFCRGKPPTPFEQVKPALPILQRLIH--LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-- 297 (384)
Q Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-- 297 (384)
.+.-+|..++...+ ......+.+.+...+. ..++..+..++++++.++.........-.-..+++.+..+...
T Consensus 432 ~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~ 508 (1049)
T 3m1i_C 432 SEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence 34445555553221 1222334445555554 3578889999999999986543321111112345555554432
Q ss_pred ---CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 298 ---PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 298 ---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+.+.++..+++++|.++..-..+.+. + ..+++.+...+.++ ++.++..||+++.+++.
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l-~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 23344446889999887432222221 1 14677788888877 89999999999999997
No 92
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.35 E-value=0.011 Score=52.06 Aligned_cols=212 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch----hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC----RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~----~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
.+...+.+..|+..|..=+-+.+..+..++.++....... -+.+.. -.+.|..++....++++.-.+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 3455688889999998888889999999999987654332 223332 2333333443334566666666667777
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcCCCChhhHHHHH
Q 016714 231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLMHPSATVLIPAL 307 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~~~~~~v~~~a~ 307 (384)
.+...-.......+.+-.+.+.++.++-++..+|..++..+..........++.. .+......+|.+++.-.+..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 6653222222335666677788899999999999999988776655444444443 3577788889999999999999
Q ss_pred HHHHHhhcCC--hHH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHh
Q 016714 308 RTVGNIVTGD--DAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA---GNRAQIQVHDS 369 (384)
Q Consensus 308 ~~l~nl~~~~--~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~ 369 (384)
..||.+.... ... +.++-+..-+..++.+|.+. +..++-+|.-++--+++ .+++...-++.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK 297 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence 9999998642 222 23333446688899999999 99999999999888887 34444444433
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.29 E-value=0.0083 Score=62.11 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHH
Q 016714 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL 208 (384)
Q Consensus 134 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 208 (384)
.+..+..+|..++..-.+. +.. -+++.+-..+.+ .+...++.++++++.++....... ...++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence 4556666776666532211 111 112233333332 456789999999999986544211 12333444
Q ss_pred HHh---cc-cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH
Q 016714 209 AQL---NE-HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE 284 (384)
Q Consensus 209 ~~l---~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~ 284 (384)
..+ .. +.++.++..++|+++.++..-.. .......+++.|+..|. +.++..|++++.+++...........
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~- 582 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA- 582 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 333 21 23678899999999999975321 12456778888888882 78999999999999976554433322
Q ss_pred cCChHHHHHhcCC--CChhhHHHHHHHHHHhhcC
Q 016714 285 AGVCPRLVELLMH--PSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 285 ~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~ 316 (384)
..++..+..++.. .+...+..++.+++.++..
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 2466677777765 3567888999999999764
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.29 E-value=0.069 Score=55.31 Aligned_cols=271 Identities=12% Similarity=0.093 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCC---c--hhHHHHHh
Q 016714 85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFV-EFLGRHDMPQLQFEAAWALTNVASGT---S--EHTRVVIE 158 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~~---~--~~~~~i~~ 158 (384)
++++++...++.++..+++ --+...+++.++++.++ .+|.. ++++..|+.||..+.+.. + ..-..+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3456677778888888875 45677888899999999 88853 789999999999998732 2 11111111
Q ss_pred --cCChHHH-----------HHhh---cCCCHHHHHHHHHHHHhhhCC-------CCchhhHHHhcCChHHHHHHhcccc
Q 016714 159 --HGAVPMF-----------VQLL---SSGSDDVREQAVWALGNVAGD-------SPSCRDLVLSSGALMPLLAQLNEHS 215 (384)
Q Consensus 159 --~g~i~~L-----------~~lL---~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~i~~~g~i~~L~~~l~~~~ 215 (384)
.+.+..+ -..+ ..++.+.....+..+..+... .+..+..+. .++..|+.+- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 1111 223456666666666554321 121122111 0122333332 344
Q ss_pred hhHHHHHHHHHHhhhhcCC--CCCChhhh----hchHHHHHHhhccCC--------------------Hh-HHHHHH-HH
Q 016714 216 KLSMLRNATWTLSNFCRGK--PPTPFEQV----KPALPILQRLIHLND--------------------EE-VLTDAC-WA 267 (384)
Q Consensus 216 ~~~~~~~a~~~L~~L~~~~--~~~~~~~~----~~~~~~L~~lL~~~~--------------------~~-i~~~a~-~~ 267 (384)
+.++...++..=..|+..- ........ ..+++.++.-+..++ .+ -.-... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 5666554443322333211 11122222 344444544443321 00 111011 33
Q ss_pred HHHhccCCh-HHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhcc-----
Q 016714 268 LSYLSDGPN-DKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ----- 339 (384)
Q Consensus 268 l~~l~~~~~-~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~----- 339 (384)
|.+++.-.. +.... +++.+...+.+ .+...++.+++++|.|+.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 333332211 22111 23445444543 567889999999999997754332212223467788888864
Q ss_pred CCchhHHHHHHHHHHHHhc---CCHHHHHHHHhC
Q 016714 340 NHKKSIKKEACWTISNITA---GNRAQIQVHDSF 370 (384)
Q Consensus 340 ~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~~ 370 (384)
. +..++..+||+++.++. .+++..+.+++.
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~ 544 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRTVILK 544 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2 44566788999998885 577777777655
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.28 E-value=0.0042 Score=64.24 Aligned_cols=219 Identities=13% Similarity=0.146 Sum_probs=127.6
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC
Q 016714 127 GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL---SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA 203 (384)
Q Consensus 127 ~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~ 203 (384)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ .++++.++..++|+++.++..-.... ..+ ...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence 3444 7889999999999998643311 12233444433 33578899999999999874211111 122 247
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCCh-HHHH
Q 016714 204 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN--DEEVLTDACWALSYLSDGPN-DKIQ 280 (384)
Q Consensus 204 i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~~~~~-~~~~ 280 (384)
++.++..| .+ +.++..|+++|.++|...+..-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77788877 33 6789999999999997543222223355556666666642 56788888999999886542 3332
Q ss_pred HHHHcCChHHHHHhc----CCC-ChhhHH---HHHHHHHHhhcCCh----------------------HHHHHHHHcCch
Q 016714 281 AVIEAGVCPRLVELL----MHP-SATVLI---PALRTVGNIVTGDD----------------------AQTQFVIDNGVL 330 (384)
Q Consensus 281 ~~~~~g~~~~L~~lL----~~~-~~~v~~---~a~~~l~nl~~~~~----------------------~~~~~i~~~g~l 330 (384)
..++ .+++.+...+ ..+ ++..+. ..+.+|+.+..+-. .....+ -..++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHHHH
Confidence 2222 2333333333 222 333333 45555555542200 011112 22355
Q ss_pred HHHHHHhccC-CchhHHHHHHHHHHHHhc
Q 016714 331 PCLYQLLTQN-HKKSIKKEACWTISNITA 358 (384)
Q Consensus 331 ~~L~~ll~~~-~~~~v~~~a~~~L~nl~~ 358 (384)
+.+..++... .++.+.+.+|.++..++.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666666432 256888889988888764
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.27 E-value=0.0049 Score=52.97 Aligned_cols=175 Identities=9% Similarity=0.039 Sum_probs=113.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh----hcCCCHHHHHHHHHHHHhhh----CCCCc
Q 016714 122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL----LSSGSDDVREQAVWALGNVA----GDSPS 193 (384)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l----L~~~~~~v~~~a~~~L~nl~----~~~~~ 193 (384)
+...|-+.+ ..-+..++..|......+++ .++. .++.++.. +.+.+..+...++.+|..+. ..+..
T Consensus 51 ~~~~lfs~d-~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 51 LMSQLFHKD-FKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHTCSC-HHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444444555 56666677666665443232 2221 23333332 34678888888888887764 22222
Q ss_pred hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
..+.-. .-.+|.|+..+ .++...++..+-.++..++.-. -...+++.+...+.+.+...+..++..+.++..
T Consensus 125 ~~~~ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 125 MSQEEV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCHHHH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 222211 12678889988 5555667666666666555421 124577888889999999999999999998865
Q ss_pred CChHHHHHHHHcCCh---HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 274 GPNDKIQAVIEAGVC---PRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 274 ~~~~~~~~~~~~g~~---~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
...-. ....+ +.+..++.+.+..|+..|+.++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 32111 23468 999999999999999999999987754
No 97
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.19 E-value=0.029 Score=49.36 Aligned_cols=242 Identities=13% Similarity=0.151 Sum_probs=162.2
Q ss_pred HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh----HHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 016714 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH----TRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGN 186 (384)
Q Consensus 112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~n 186 (384)
.+...+++..|+..|..=+ -+.+..++.++.++....... ...+.. ..++..|+.... ++++.-.|-..|.-
T Consensus 73 ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 4566788999999998877 789999999999988754432 223332 122333333333 44555555555666
Q ss_pred hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCCHhHHH
Q 016714 187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLNDEEVLT 262 (384)
Q Consensus 187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~~~i~~ 262 (384)
.+.+.. +...++..+.+..+.+.+ +.++=++...|..++..|............ ...+.....+|.+++--++.
T Consensus 150 cir~e~-la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIRHEP-LAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHTSHH-HHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHhHH-HHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 555544 556666777788888888 677788888999988877765322222222 45667778899999999999
Q ss_pred HHHHHHHHhccCChHH---HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHc--CchHHHH
Q 016714 263 DACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD---DAQTQFVIDN--GVLPCLY 334 (384)
Q Consensus 263 ~a~~~l~~l~~~~~~~---~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~i~~~--g~l~~L~ 334 (384)
.++..|+.+....... ...+-+..-+..++.+|.+.+..++..|..++--.++.. +.....++.. .++..|.
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~ 307 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 307 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999988653321 222233356888999999999999999999998887642 3444444432 5666666
Q ss_pred HHhccC-CchhHHHHHHHHHHHHhc
Q 016714 335 QLLTQN-HKKSIKKEACWTISNITA 358 (384)
Q Consensus 335 ~ll~~~-~~~~v~~~a~~~L~nl~~ 358 (384)
....+. ++.....+=...+..|..
T Consensus 308 ~f~~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 308 KFQNDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp HTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred hCCCCCcchhhHHHHHHHHHHHHHh
Confidence 666544 356666666666666654
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.18 E-value=0.00057 Score=63.90 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=143.1
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC-cHHHHHHcCCHHHHHHhhc--C-----CC--ChHHHHHHHHHHH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSP-PIDEVIKAGVVPRFVEFLG--R-----HD--MPQLQFEAAWALT 143 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~-~~~~~~~~g~i~~Lv~lL~--~-----~~--~~~~~~~a~~~L~ 143 (384)
+..+.|+..|.++.++++.-|+..||.++...... .+..-.+..+.-.|+.+|. . +| -..+|+.|+.+|+
T Consensus 174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 45688888999999999999999999988653110 0000001133344444332 1 11 1478999999999
Q ss_pred HHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHH-hcCChHHHHHHhcccchhHHHHH
Q 016714 144 NVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVL-SSGALMPLLAQLNEHSKLSMLRN 222 (384)
Q Consensus 144 nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~-~~g~i~~L~~~l~~~~~~~~~~~ 222 (384)
.+ ..-+.. ..++..++..+..+.-+++..++-.|..+ .+.+. -.++++.++.-| .+.|.+++..
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL-~D~DDDVRAV 318 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLL-SSPDEDIKLL 318 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHT-TCSSHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCcccHHHHH
Confidence 98 543332 34455555555778899999999999988 12211 133566677777 6678899999
Q ss_pred HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714 223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND--EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300 (384)
Q Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~--~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~ 300 (384)
|+.+|.-++ .+ ..+..++..+...|.+-| ......++..|+.|+..+.. .-.....+|+|.+.|.|.-.
T Consensus 319 AAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtIT 389 (800)
T 3oc3_A 319 SAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVP 389 (800)
T ss_dssp HHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSH
T ss_pred HHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcH
Confidence 999999888 12 334566677777765432 22344455566666655431 11223789999999999999
Q ss_pred hhHHHHHHHHHHhh
Q 016714 301 TVLIPALRTVGNIV 314 (384)
Q Consensus 301 ~v~~~a~~~l~nl~ 314 (384)
.||..+++++..+.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998887
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.06 E-value=0.0058 Score=63.10 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHH-HH----cCChHHHHHhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 016714 256 NDEEVLTDACWALSYLSDGPNDKIQAV-IE----AGVCPRLVELLM-----HPSATVLIPALRTVGNIVTGDDAQTQFVI 325 (384)
Q Consensus 256 ~~~~i~~~a~~~l~~l~~~~~~~~~~~-~~----~g~~~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~ 325 (384)
.++..++.++.+++.++++.......+ -. ..+++.+..++. ++.+.++..+++++|..+..-..+
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~----- 529 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE----- 529 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----
Confidence 457788999999999988643211000 00 023455555544 677899999999999998653322
Q ss_pred HcCchHHHHHHh------ccCCchhHHHHHHHHHHHHhc
Q 016714 326 DNGVLPCLYQLL------TQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 326 ~~g~l~~L~~ll------~~~~~~~v~~~a~~~L~nl~~ 358 (384)
...++.++..+ .++ ++.++..|+.++.+++.
T Consensus 530 -~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 530 -SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVK 566 (980)
T ss_dssp -CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHH
Confidence 23344444443 345 67899999999999996
No 100
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.98 E-value=0.0081 Score=62.10 Aligned_cols=139 Identities=11% Similarity=0.122 Sum_probs=93.1
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHH
Q 016714 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP 247 (384)
Q Consensus 170 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 247 (384)
.+.+...++.++++++.++....... ...++.++..+.. .+++.++..++|+++.++..-.. .......+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 45678899999999999997643211 1234444444422 23667899999999999875211 1245678899
Q ss_pred HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHHHHhhcCC
Q 016714 248 ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 248 ~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~ 317 (384)
.++..|++ +.++..|++++.+++........... ..++..|..++.. -+...+..++.++|.++...
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 98888854 88999999999999864332211111 1344555555554 25678888999999998654
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.017 Score=50.37 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=122.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH--HHHH-hc-CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc-
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT--RVVI-EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS- 193 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~--~~i~-~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~- 193 (384)
+| |-+-|.+.+ ...|.+|...|..+....+... .... .. ...+.+-..+.+.+..++..++.+|..++.....
T Consensus 12 lp-l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 44 556777888 8999999999888765433221 1111 12 2455666788899999999999999988743210
Q ss_pred --hhh--HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHH
Q 016714 194 --CRD--LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALS 269 (384)
Q Consensus 194 --~~~--~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~ 269 (384)
.+. ...-..+++.|+.....+....++..+..++..++..... ...+++.+...+.+.++.++..++..|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 111 1112235666776522556667777777777766654211 1234677788889999999999998888
Q ss_pred HhccC-ChH--HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 270 YLSDG-PND--KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 270 ~l~~~-~~~--~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
.+... ... .....+ ..+++.+..+|.+.++.||..|..+++.+-..
T Consensus 165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 77532 110 011111 13566788889999999999999999988653
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.95 E-value=0.015 Score=49.85 Aligned_cols=179 Identities=11% Similarity=0.079 Sum_probs=119.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-C-CHHHHHHhhcCCCChHHHHHHHHHHHHHhc----CCc
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-G-VVPRFVEFLGRHDMPQLQFEAAWALTNVAS----GTS 150 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g-~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~----~~~ 150 (384)
+.+...+.+.|...+..|+..|...++.. + +.++.. + +++.+.--+.+++ +.+...++..|..+.. ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~-~~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---P-RSLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---H-HHHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---h-HHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccc
Confidence 67788888999999999999999887642 1 222211 1 2332222223455 8888888888877643 111
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
.....-. .-.+|.|+.-+.++.+.+++.+-.++..++.-.+. ..+.+.+++-+ .+.+...+..++..+..+
T Consensus 124 ~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 1121111 12579999999999999999988888776532221 12456677777 666777888887777777
Q ss_pred hcCCCCCChhhhhchH---HHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 231 CRGKPPTPFEQVKPAL---PILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~---~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
-...... ....+ |.+.+++.+.|..++..|+.++..+..
T Consensus 195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6543222 13467 999999999999999999999986644
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.78 E-value=0.047 Score=57.03 Aligned_cols=149 Identities=11% Similarity=0.148 Sum_probs=90.9
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchh-hHHHhcCChHHHHHHhcc----cchhHHHHHHHHHHhhhhcCCC
Q 016714 163 PMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCR-DLVLSSGALMPLLAQLNE----HSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 163 ~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~~l~~----~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
+.+-..+. +.+...++.++|+++.+++...... ..+. ..+++.++.+... ++++-++..++|+++.++..-.
T Consensus 454 ~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 44444454 3567889999999999986533210 1111 1133333332211 1233344468999998886531
Q ss_pred CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHH----------HcCChHHHHHhcCCCChhhHHH
Q 016714 236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVI----------EAGVCPRLVELLMHPSATVLIP 305 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~----------~~g~~~~L~~lL~~~~~~v~~~ 305 (384)
. .......+++.++..+.++++.++..|++++.+++..... .+. -..++..+..++..-+..-...
T Consensus 533 ~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~---~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 533 A-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp H-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 1 2345678888888889888999999999999999975332 221 0133444555555555555667
Q ss_pred HHHHHHHhhcC
Q 016714 306 ALRTVGNIVTG 316 (384)
Q Consensus 306 a~~~l~nl~~~ 316 (384)
.+.+++.++..
T Consensus 609 ~~eai~~ii~~ 619 (1049)
T 3m1i_C 609 FYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 78888888654
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.71 E-value=0.0034 Score=65.02 Aligned_cols=142 Identities=12% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhhhCCCCch-hhHHHhcCChHHHHHHhcc----cchhHHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 016714 172 GSDDVREQAVWALGNVAGDSPSC-RDLVLSSGALMPLLAQLNE----HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL 246 (384)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~-~~~i~~~g~i~~L~~~l~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 246 (384)
.+-..++.++|++|.|++....- -+.++ ..+++.|+.++.. +....++..++|+++..++.-. .......+++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 56889999999999999754422 11111 1266777776632 1223345578899998887531 1123456777
Q ss_pred HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH----------cCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE----------AGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 247 ~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~----------~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
..|...+..+++.++..|||++.++|..... .+.. ..++..+...+..-++.-...++.++|.++..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 7788888778899999999999999975332 2221 12333444444445666678899999999876
Q ss_pred Ch
Q 016714 317 DD 318 (384)
Q Consensus 317 ~~ 318 (384)
.+
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.51 E-value=0.0036 Score=53.29 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 016714 249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG 328 (384)
Q Consensus 249 L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g 328 (384)
+..++..+++.|+..+...+ ..+.|..++.+++..|+..++..++
T Consensus 175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 33455666666666665432 2356777777888888887777654
Q ss_pred chHHHHHHhccCCchhHHHHHHHH
Q 016714 329 VLPCLYQLLTQNHKKSIKKEACWT 352 (384)
Q Consensus 329 ~l~~L~~ll~~~~~~~v~~~a~~~ 352 (384)
.+.|..+ .++ ++.||..|.-.
T Consensus 220 -~~~L~~L-~D~-~~~VR~aa~~~ 240 (244)
T 1lrv_A 220 -LEALREL-DEP-DPEVRLAIAGR 240 (244)
T ss_dssp -HHHHHHC-CCC-CHHHHHHHHCC
T ss_pred -HHHHHHc-cCC-CHHHHHHHHHH
Confidence 2445555 666 88898887643
No 106
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.44 E-value=0.21 Score=45.50 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=103.9
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----------CCChHHHHHHHHHHHHH
Q 016714 77 PSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----------HDMPQLQFEAAWALTNV 145 (384)
Q Consensus 77 ~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~nl 145 (384)
..++..|.+.- .......+..|+.-+..++..-++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45566666543 233345567777666544334456676 6678999888852 11257889999999999
Q ss_pred hcCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-ch-hhHHH----------hcCChHHHHHHhc
Q 016714 146 ASGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SC-RDLVL----------SSGALMPLLAQLN 212 (384)
Q Consensus 146 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~i~----------~~g~i~~L~~~l~ 212 (384)
... ......++. ..++..|...|.+.++.++..++..|+-+|..+. .. ...++ +..-+.+++..|.
T Consensus 148 mN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 874 555665665 5678999999999999999999999999886543 22 22222 2334667777775
Q ss_pred ccchhHHHHHHHHHHhhhhcCCCC
Q 016714 213 EHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
...+.+...++...+-.+....+.
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCC
Confidence 445666666666655556655433
No 107
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.38 E-value=0.11 Score=43.71 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHhcCCchhHHHHHh-cCC
Q 016714 93 EATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----H------DMPQLQFEAAWALTNVASGTSEHTRVVIE-HGA 161 (384)
Q Consensus 93 ~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~ 161 (384)
..+..|+..+..++..-++.+ ..+++..|+.+|.. + .+.+.+.+++.||..+... ....+.++. .++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHH
Confidence 345555555543323335556 56778888887753 1 1257789999999999874 555666665 567
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-ch-hhHHH----------hcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SC-RDLVL----------SSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~i~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
+..|...|.++++.++..++..|+.+|.-+. .. ...++ +..-..++++.+....+.+....++..+-.
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 177 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 8889999999999999999999988885443 12 22222 122344555555434444555444444444
Q ss_pred hhcC
Q 016714 230 FCRG 233 (384)
Q Consensus 230 L~~~ 233 (384)
+...
T Consensus 178 li~~ 181 (233)
T 2f31_A 178 LITP 181 (233)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 4444
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.32 E-value=0.03 Score=46.72 Aligned_cols=142 Identities=10% Similarity=0.023 Sum_probs=100.8
Q ss_pred HHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH-hhccCCHhHHHHHHHHHHHhcc-CChHHHHHHH
Q 016714 206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR-LIHLNDEEVLTDACWALSYLSD-GPNDKIQAVI 283 (384)
Q Consensus 206 ~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~i~~~a~~~l~~l~~-~~~~~~~~~~ 283 (384)
.+...|-+++..+++..|+.+|..+ . .....++.+.. +-..++..|+.-++.++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4555554666567888888887766 2 11457777777 4456678899999999998874 3222
Q ss_pred HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714 284 EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD--DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR 361 (384)
Q Consensus 284 ~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 361 (384)
..++.+..++.+++..++..|...+.--+... ..... -+++.|-.+..++ +..||+..+|.|..++..+|
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence 25678889999999999999887764322211 11111 1466666677777 89999999999999999999
Q ss_pred HHHHHHHhC
Q 016714 362 AQIQVHDSF 370 (384)
Q Consensus 362 ~~i~~l~~~ 370 (384)
+-+...++.
T Consensus 211 d~V~~~~~~ 219 (240)
T 3l9t_A 211 DLVKIELKN 219 (240)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 998888765
No 109
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.18 E-value=0.04 Score=56.90 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHH-HhcC----ChHHHHHhhc-----CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVV-IEHG----AVPMFVQLLS-----SGSDDVREQAVWALGNVAGDSPSCRDLVLSS 201 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i-~~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~ 201 (384)
....+.++.+|+.++.+-......+ -... .++.+..++. .+++.++..++|+++..+.--.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 6778889999999888643211111 0112 2344455544 57899999999999998753221 12
Q ss_pred CChHHHHHHhcc-----cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc-----CC--------------
Q 016714 202 GALMPLLAQLNE-----HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL-----ND-------------- 257 (384)
Q Consensus 202 g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-----~~-------------- 257 (384)
..+++++..+.. +++..++..++.++.++|......-......++..+..+|.. .+
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 356677766644 456789999999999999875432222334455555555542 11
Q ss_pred --HhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHH----HHHhcCCC----Chhh-HHHHHHHHHHhhcCChHH---
Q 016714 258 --EEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPR----LVELLMHP----SATV-LIPALRTVGNIVTGDDAQ--- 320 (384)
Q Consensus 258 --~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~----L~~lL~~~----~~~v-~~~a~~~l~nl~~~~~~~--- 320 (384)
.+-+.+...+++.+... +.+.....++ .+++. +-..+... +... ....+.++|+++.+-+..
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 11344455566665532 3333222222 22333 33333221 1111 225677788888653211
Q ss_pred ---HHHHHHcCchHHHHHHhcc-CCchhHHHHHHHHHHHHhcCC
Q 016714 321 ---TQFVIDNGVLPCLYQLLTQ-NHKKSIKKEACWTISNITAGN 360 (384)
Q Consensus 321 ---~~~i~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~ 360 (384)
...++. .+.+.+...+.. ..+..|+..++.++..+...-
T Consensus 690 ~~p~~~~f~-~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 690 EVAWLASFN-KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp CCSHHHHHH-HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTT
T ss_pred CCcHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 111221 355666666652 226889999999999998743
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.10 E-value=0.16 Score=42.34 Aligned_cols=145 Identities=17% Similarity=0.040 Sum_probs=104.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhC-CCCchh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAG-DSPSCR 195 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~ 195 (384)
.++..-.+.+++. .++|..|+..|+.. .. . ..+++.+.. +-.+++=.|++.++.+++.++. ..+..
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 3455556666666 79999999998877 31 1 124555665 4556788999999999999984 33321
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.++.+..-. .+++..+++.++-.+.--|.. + ........++|.|..+..+++..|+..+.|.|..++..+
T Consensus 140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 345555555 788899999998887655543 2 122233668888888888899999999999999999998
Q ss_pred hHHHHHHHH
Q 016714 276 NDKIQAVIE 284 (384)
Q Consensus 276 ~~~~~~~~~ 284 (384)
++-+..+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887665544
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.10 E-value=0.73 Score=47.84 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=64.9
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCChHHHHHHHHcCch
Q 016714 256 NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS-----ATVLIPALRTVGNIVTGDDAQTQFVIDNGVL 330 (384)
Q Consensus 256 ~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l 330 (384)
.++..+..+||+++.++..-.+..+.-.=..+++.|+.+..+.. ..++...++++|..+..-..+-. +++ .++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L~-~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FLK-TVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HHH-HHH
Confidence 35889999999999998543321111111245677776664432 23455567899987654322222 121 356
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 331 PCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 331 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
..|...+..+ ++.++..||-++..++.
T Consensus 569 ~~L~~~m~~~-~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 569 NKLFEFMHET-HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHTTCC-STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 6777888777 88999999999999986
No 112
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.95 E-value=0.28 Score=43.05 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=102.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCC----hHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGA----VPMFVQLLSS-GSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
+..+.++++.+. +.++-++.++.-.+. .+.....+.+... +..+...+.+ ..+..+-.++.+++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 455556655443 455566666655554 2444444433222 2233344432 456678899999999987765
Q ss_pred hhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhc-cCCHhHHHHHHHHH
Q 016714 194 CRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIH-LNDEEVLTDACWAL 268 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l 268 (384)
.++.+... ...+++.+. ...+..++..++.++.|++... ..........++..+..++. ..|.+....++-+|
T Consensus 181 g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 55555542 234444432 3456788888888999988753 11223333445555556664 35889999999999
Q ss_pred HHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714 269 SYLSDGPNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 269 ~~l~~~~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
++|...+.+..+....-|+-..+-++.+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998776655544444655555555544
No 113
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.88 E-value=0.055 Score=50.96 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=135.3
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----C------C---CHHHHHHHHHHH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----S------G---SDDVREQAVWAL 184 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~------~---~~~v~~~a~~~L 184 (384)
+...|+.-|-++. .++|..|+-+|..+..............+. +..++++. + + -..||+.|+.+|
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 5566766666777 899999999999876532110000011111 22333221 1 1 247999999999
Q ss_pred HhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHH
Q 016714 185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDA 264 (384)
Q Consensus 185 ~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a 264 (384)
|.+ ..-+.- ..++..|+..+ .....+++..++-.|..+..--. ...++++.++..|...|.+|+.-|
T Consensus 253 GaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 253 SRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHH
Confidence 998 544421 23444444433 45567888888888888821111 157788999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCc
Q 016714 265 CWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS--ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHK 342 (384)
Q Consensus 265 ~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~ 342 (384)
+.+|.-++ .++....+ +..+-..|.+.+ ..-....+..|+.+++..... -.+...+|.|...+.++ -
T Consensus 320 AetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-I 388 (800)
T 3oc3_A 320 AELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-V 388 (800)
T ss_dssp HHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-S
T ss_pred HHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-c
Confidence 99999998 22333332 334444443221 233455667777776654311 11237899999999999 8
Q ss_pred hhHHHHHHHHHHHHh
Q 016714 343 KSIKKEACWTISNIT 357 (384)
Q Consensus 343 ~~v~~~a~~~L~nl~ 357 (384)
..||+.+..++..+.
T Consensus 389 TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 389 PEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887766
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.87 E-value=0.21 Score=46.08 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH
Q 016714 172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR 251 (384)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ 251 (384)
++...+..|+..+..+..+.|..++. ++..+++++ .+.|..++..|...|..+|.+ ..+..+...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 46899999999999999998876554 677899999 788899999999999999986 346788899999
Q ss_pred hhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 252 lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
+|+++++.-...+-++|..+...++.. .+..+...+..+++.+++.++..|..-.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999999877777777777766555422 2233333333346778888887775543
No 115
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.52 E-value=0.66 Score=42.24 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=99.2
Q ss_pred HHHHHhcCCCHHH-HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHh
Q 016714 78 SMVQGVWSEDPAL-QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR----H------DMPQLQFEAAWALTNVA 146 (384)
Q Consensus 78 ~lv~~l~s~~~~~-~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~ 146 (384)
.+++.|.+..... ....+..|+..+..++...++.+. .+++..|+.+|.. + .+...+.+++.||..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 4555565543222 233455565555443233455564 5678888887752 1 12578999999999998
Q ss_pred cCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-ch-hhHHH----------hcCChHHHHHHhcc
Q 016714 147 SGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SC-RDLVL----------SSGALMPLLAQLNE 213 (384)
Q Consensus 147 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~i~----------~~g~i~~L~~~l~~ 213 (384)
.. ......++. .+++..|...|.++++.++..++..|+.+|.-+. .. ...++ +..-+.++++.+..
T Consensus 87 N~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 87 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp SS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred CC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 74 555555555 5678999999999999999999988888886443 11 22222 23346667777755
Q ss_pred cchhHHHHHHHHHHhhhhcCCCC
Q 016714 214 HSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 214 ~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
+.+.+...+++..+-.+....+.
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred CChHHHHHHHHHHHHHHHCCCCC
Confidence 56667766666666666665443
No 116
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.41 E-value=0.95 Score=38.12 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHH-HhcCChHHHHHHhcc------cc-----hhHHHHHHHHHHhhhhcCCCCCChhh
Q 016714 174 DDVREQAVWALGNVAGDSPSCRDLV-LSSGALMPLLAQLNE------HS-----KLSMLRNATWTLSNFCRGKPPTPFEQ 241 (384)
Q Consensus 174 ~~v~~~a~~~L~nl~~~~~~~~~~i-~~~g~i~~L~~~l~~------~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~ 241 (384)
++-++.|+.-|+.=-...+.....+ ...|.+..|++-+.. .+ ...-.-+++..|-.++.+ |......
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~F 93 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAF 93 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHH
Confidence 4457776666655333333322222 234555555443311 11 112234555555666665 6666666
Q ss_pred hhchHH-HHHHhhccCC-----HhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 242 VKPALP-ILQRLIHLND-----EEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 242 ~~~~~~-~L~~lL~~~~-----~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
+..-+| +|..+|+..+ +.++-.+++.++.+... +.+.+..+.+.+++|..++.+..++.--+.-|..++..|.
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 655555 6777776554 46788899999998865 4577778889999999999999999988999999999987
Q ss_pred cCChHHHHHHHH--------cCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 315 TGDDAQTQFVID--------NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 315 ~~~~~~~~~i~~--------~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
.. +.+..++-. ..++..++.-+....++.+-|...++-..++. ++...+.+-
T Consensus 174 ~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~ 233 (268)
T 2fv2_A 174 LD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALR 233 (268)
T ss_dssp HS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred cc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 52 322222211 12344444444333378888888888888886 555555554
No 117
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.32 E-value=0.21 Score=43.97 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=87.4
Q ss_pred HHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-ccCCHhHHH
Q 016714 184 LGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI-HLNDEEVLT 262 (384)
Q Consensus 184 L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~i~~ 262 (384)
|.|+.-++...-+-+...+++..+...+ +.++.++.++.+..|...+..+ ..........+|.+...+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 4444445545667788888998888888 7778889999999998888763 222333477889888777 477899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHcCChHHHHHhc
Q 016714 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 295 (384)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL 295 (384)
...+.|+|...+.....+..+..|+++.|-...
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 999999999999888888888999999998876
No 118
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.24 E-value=0.23 Score=41.83 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC----hHHHHHHHHHHHHHhc-CCchhHHHHHhcCChHHH
Q 016714 91 QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM----PQLQFEAAWALTNVAS-GTSEHTRVVIEHGAVPMF 165 (384)
Q Consensus 91 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~----~~~~~~a~~~L~nl~~-~~~~~~~~i~~~g~i~~L 165 (384)
...|+..|.-+++. ++.+..++++++--.|..+|+..+. +-++..++.+++.+.. ++++....+.+.+++|..
T Consensus 73 VcnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 73 VCNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 34455556666653 7888889999988889999976542 4677888888888775 456777888899999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH------HHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 166 VQLLSSGSDDVREQAVWALGNVAGDSPSCRDL------VLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 166 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~------i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
++.+..+++--+..|.+.+..|..++...... +.. ...+..++..+...+++.+.+++.++...|+.+
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987665432211 111 113444555555666778888888888888876
No 119
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.10 E-value=0.083 Score=46.51 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=114.3
Q ss_pred HHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHH
Q 016714 141 ALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSML 220 (384)
Q Consensus 141 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~ 220 (384)
-|.|+.-+++...+-+++..++..+...+.-++.++....+..|...+....-+..-+ ...+|-++..+..+.+.++.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence 3455666678999999999999999999999999999999999988864333221111 23577788888788899999
Q ss_pred HHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcc-------CCHh-------HHHHHHHHHHHhcc------------
Q 016714 221 RNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHL-------NDEE-------VLTDACWALSYLSD------------ 273 (384)
Q Consensus 221 ~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~-------~~~~-------i~~~a~~~l~~l~~------------ 273 (384)
......|+|...++ |-.......+.++.|-..+.. .+.. +...+++++.|..-
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~ 422 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT 422 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence 99999999999987 545555558888887776532 2233 34444444444331
Q ss_pred -CCh--HHHHHHHHcCChHHHHHhcCCCC------hhhHHHHHHHHHHh
Q 016714 274 -GPN--DKIQAVIEAGVCPRLVELLMHPS------ATVLIPALRTVGNI 313 (384)
Q Consensus 274 -~~~--~~~~~~~~~g~~~~L~~lL~~~~------~~v~~~a~~~l~nl 313 (384)
+.. .+...+++..++..|+..|+.+. -+++...++.+--+
T Consensus 423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lv 471 (619)
T 3c2g_A 423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILL 471 (619)
T ss_dssp CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Confidence 111 22334455567788888875543 23455555554443
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.02 E-value=0.21 Score=43.89 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=71.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh--h
Q 016714 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEH--GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR--D 196 (384)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~ 196 (384)
.+...+.++..+..+.-++++++|+... +..+..+... .+++.+...+.+++..++..++.++.|++...-..+ +
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 4445554444477899999999999885 6666666642 244555556566789999999999999984211000 1
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.... .+..+..++....+.+....++-+|.+|...
T Consensus 230 ~~~~--ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 230 GKAQ--CLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 1111 3334444554455778888888888888875
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.86 E-value=0.72 Score=42.66 Aligned_cols=118 Identities=18% Similarity=0.042 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL 211 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l 211 (384)
+..+..|+..+......-++..+ .++..++.+..+++..||.+|+..|..+|.+ . .-. .+.+.|.++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~-----kiaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLP-----RVADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhh-----hHHHHHHHHH
Confidence 78888888888888777666554 3567888999999999999999999999988 3 212 2567889999
Q ss_pred cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHH
Q 016714 212 NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALS 269 (384)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~ 269 (384)
+..+..-...+-++|..|...+| .+.+..+...+.++++.++..++.-|.
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 45555445555666666655433 344444444454567778877776663
No 122
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.35 E-value=0.033 Score=47.33 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=86.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
.+..+++++++.++..++..+ . .+.|..++.+++ +.++..++..+ .
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L----~---------------~~~L~~ll~D~d-~~VR~~aA~~l---~----------- 123 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRL----P---------------REQLSALMFDED-REVRITVADRL---P----------- 123 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS----C---------------SGGGGGTTTCSC-HHHHHHHHHHS---C-----------
T ss_pred HHHHHccCcCHHHHHHHHHHC----C---------------HHHHHHHHcCCC-HHHHHHHHHhC---C-----------
Confidence 355566777888888777532 1 123555666666 67777666632 0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHH-----hhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 158 EHGAVPMFVQLLSSGSDDVREQAVWALG-----NVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~-----nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
.+.|..++++++..|+..++..+. .+..| ++.+|..+... ..+.++..+..+.+..++..++..+
T Consensus 124 ----~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~-l~~~ll~~ll~D~d~~VR~aaa~~l---- 194 (244)
T 1lrv_A 124 ----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKR-LPEESLGLMTQDPEPEVRRIVASRL---- 194 (244)
T ss_dssp ----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHH-SCGGGGGGSTTCSSHHHHHHHHHHC----
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHhC----
Confidence 122333444555555555544211 01111 11122222211 1122332333666677777766542
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
..+.|..++..+++.|+..+...++ .+.|..+ .+++..|+..+...||
T Consensus 195 -------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -------------RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1246778889999999999888753 2455555 8888999988876554
No 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.14 E-value=0.97 Score=46.90 Aligned_cols=220 Identities=11% Similarity=0.077 Sum_probs=135.4
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC----
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG---- 148 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~---- 148 (384)
+..++.++..+.+++++.+..|-..|..+-. ++. ..+.+..+|..+.++.++.-|+..|.+....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp~--------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HPD--------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CSC--------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---Cch--------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4567888888888888888888888875522 222 2444555565554589999999999887552
Q ss_pred -CchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCC-CCc-hhhHHHhcCChHHHHHHhcccchhHHH
Q 016714 149 -TSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGD-SPS-CRDLVLSSGALMPLLAQLNEHSKLSML 220 (384)
Q Consensus 149 -~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~-~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~ 220 (384)
+++.+..+ +..++..+...-.+ .++.++.+.+.++..++.. .|. . .+.++.++..+.. ++...
T Consensus 96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W------p~fi~dLv~~~~~--~~~~~ 166 (1073)
T 3gjx_A 96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW------PTFISDIVGASRT--SESLC 166 (1073)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHHHH--CHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc------cHHHHHHHHHhCC--CHHHH
Confidence 23343333 33455666554333 3467778888888888742 111 1 1245556666522 23445
Q ss_pred HHHHHHHhhhhcCCCCC-----C-------hhhh----hchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 016714 221 RNATWTLSNFCRGKPPT-----P-------FEQV----KPALPILQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVI 283 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~-----~-------~~~~----~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~ 283 (384)
...+++|..|+..-... . ...+ ..+++.+..+|. ..++++...++.++..+..--+ ...++
T Consensus 167 ~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~ 244 (1073)
T 3gjx_A 167 QNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIF 244 (1073)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhc
Confidence 56666666666541000 0 0111 223333444443 4567888888999988877643 34577
Q ss_pred HcCChHHH-HHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 284 EAGVCPRL-VELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 284 ~~g~~~~L-~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
+.++++.+ ..+|. ++.++..|+.||..|+..
T Consensus 245 ~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 245 ETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 88889988 46664 567899999999999864
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.73 E-value=1.9 Score=44.90 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=108.1
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHhhhC----CCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhh
Q 016714 161 AVPMFVQLLSS----GSDDVREQAVWALGNVAG----DSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSN 229 (384)
Q Consensus 161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~ 229 (384)
.+..+..++.+ .++.+++.++.+++++.. +.+.+.. ..++++.+.+. ...+.+-...++.+|.|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 34455566654 567888999999988863 3222221 23455554442 33356667788899999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc--CCCCh
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIHL-------NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL--MHPSA 300 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~~-------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL--~~~~~ 300 (384)
+... ..++.|.+++.. ....++..|+|+|..+....+..+. +.+.++. ...++
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 8863 456777777642 2356889999999999877654443 4566666 45678
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
++|..|+..|-.- +|.. ..+..+...+....+..+.....-.|.+++..
T Consensus 529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 8998888877432 2211 13445666777655778888888888888874
No 125
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=93.11 E-value=0.074 Score=30.44 Aligned_cols=38 Identities=37% Similarity=0.542 Sum_probs=28.3
Q ss_pred HHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhh
Q 016714 11 VRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRR 50 (384)
Q Consensus 11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~ 50 (384)
.|...||+ +...++..++|+ ..+..|++|-+.++.-|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence 47788998 566556555554 579999999999887764
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.87 E-value=4.9 Score=33.51 Aligned_cols=168 Identities=11% Similarity=0.159 Sum_probs=100.1
Q ss_pred CchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL 217 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~ 217 (384)
.....+.+ ..+++..|+.+|.. .+......++.||..+.-........+...+.+..+...| .++++
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCc
Confidence 34555556 35677777777642 1356778888999888766555545444555677777777 67778
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714 218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
.++..++..|+.+|..+... |..+.++..+.+ .. ..-+..-+..++..|..
T Consensus 111 ~~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~~---------------~~--------~~~e~~RF~~lv~~l~~ 161 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPE------DMNERVLEAMTE---------------RA--------EMDEVERFQPLLDGLKS 161 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSS------CHHHHHHHHHHH---------------HH--------HHHTSCTTHHHHHTTST
T ss_pred hHHHHHHHHHHHHHhCCCCC------ChHHHHHHHHHH---------------HH--------HhCCcchHHHHHHHHhc
Confidence 88888888898888874311 102222222221 10 01122345566666753
Q ss_pred -CChhhHHHHHHHHHHhhcCChH------HHHHHHHcCchHHHHHHhccCCchhHHHH
Q 016714 298 -PSATVLIPALRTVGNIVTGDDA------QTQFVIDNGVLPCLYQLLTQNHKKSIKKE 348 (384)
Q Consensus 298 -~~~~v~~~a~~~l~nl~~~~~~------~~~~i~~~g~l~~L~~ll~~~~~~~v~~~ 348 (384)
.+.+.+..++..+..++.+.++ ....+...|+.+.+-.+=... ++.+...
T Consensus 162 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~~Q 218 (233)
T 2f31_A 162 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMKVQ 218 (233)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHHHH
Confidence 4556667777777777766442 234455678777776665444 5555544
No 127
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.53 E-value=16 Score=38.65 Aligned_cols=258 Identities=9% Similarity=0.038 Sum_probs=144.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcC----
Q 016714 76 IPSMVQGVWSE--DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASG---- 148 (384)
Q Consensus 76 l~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~---- 148 (384)
+..++..+.+. +.+.+.+|-..|..+-.. + .....+...|. .+.++.++..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 55556555554 667788888888766332 1 13444444443 333389999999999987532
Q ss_pred -CchhHHHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHhhhCCC-C-chhhHHHhcCChHHHHHHhcccchhHHHHH
Q 016714 149 -TSEHTRVVIEHGAVPMFVQLLS---SGSDDVREQAVWALGNVAGDS-P-SCRDLVLSSGALMPLLAQLNEHSKLSMLRN 222 (384)
Q Consensus 149 -~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~-~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~ 222 (384)
+++.+..+. ..++..+..... ..+..++.+.+.++..|+... | .. .+.++.|+..+.. +......
T Consensus 82 l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 82 MSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp SCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHH
Confidence 233443333 344555444321 146889999999999987432 2 12 2356677777733 3344666
Q ss_pred HHHHHhhhhcCC---CCCChhh-------h----hchHHHHHHhhcc-------------------CCHhHHHHHHHHHH
Q 016714 223 ATWTLSNFCRGK---PPTPFEQ-------V----KPALPILQRLIHL-------------------NDEEVLTDACWALS 269 (384)
Q Consensus 223 a~~~L~~L~~~~---~~~~~~~-------~----~~~~~~L~~lL~~-------------------~~~~i~~~a~~~l~ 269 (384)
++.+|..++..- ....... + ..+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 777777776531 1111110 1 1334444444432 12446677788887
Q ss_pred HhccCChHHHHHHHHcC--ChHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHc---CchHHHHHHhc----
Q 016714 270 YLSDGPNDKIQAVIEAG--VCPRLVELLMHPSATVLIPALRTVGNIVTGD--DAQTQFVIDN---GVLPCLYQLLT---- 338 (384)
Q Consensus 270 ~l~~~~~~~~~~~~~~g--~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~---g~l~~L~~ll~---- 338 (384)
+....-+. ..+.+.. +++.+..++. ++.++..|+.+|..++... ++....++.. ..+..++....
T Consensus 233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 66554332 2333433 6777777665 4678999999999998754 2322222221 11233444432
Q ss_pred ---cCCchhHHHHHHHHHHHHh
Q 016714 339 ---QNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 339 ---~~~~~~v~~~a~~~L~nl~ 357 (384)
+.++.++.+..+..+..++
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHH
Confidence 1114567777777777776
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.38 E-value=8 Score=40.23 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=84.8
Q ss_pred hHHHHHHhccc---chhHHHHHHHHHH----hhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 016714 204 LMPLLAQLNEH---SKLSMLRNATWTL----SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN 276 (384)
Q Consensus 204 i~~L~~~l~~~---~~~~~~~~a~~~L----~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~ 276 (384)
+..+..++... .++.+...+..++ ...|...+.+....+..+...+.+.+...+.+-..-++.+|+|+-..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 34455555322 2334444444444 44555544444455666777777778888888889999999998542
Q ss_pred HHHHHHHHcCChHHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc-cCCchhHHHH
Q 016714 277 DKIQAVIEAGVCPRLVELLMH-------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT-QNHKKSIKKE 348 (384)
Q Consensus 277 ~~~~~~~~~g~~~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~~v~~~ 348 (384)
..++.|.+++.. ....++..|+++|.+++...+...+ +.+.++.. ...++++|-.
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 245667777632 2346788899999999976665544 34556663 2337889999
Q ss_pred HHHHHHH
Q 016714 349 ACWTISN 355 (384)
Q Consensus 349 a~~~L~n 355 (384)
|++.|..
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888854
No 129
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.85 E-value=9.1 Score=34.63 Aligned_cols=157 Identities=11% Similarity=0.160 Sum_probs=95.5
Q ss_pred CchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL 217 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~ 217 (384)
.....+.++ .+++..|+.+|.. .+......++.||..+.-........+.....+..|...+ .+..+
T Consensus 99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~ 176 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP 176 (383)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSH
T ss_pred ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCch
Confidence 345556665 5667888877741 2457788889999888765554545555556777788887 67778
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714 218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
.+...++..|+.+|...... |+.+.++..+ .++.. ..+..-+..++..|..
T Consensus 177 ~~~~~aleLL~~lc~~~~~~------gG~~~VL~Al---------------~~~~~--------~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 177 NMMIDAAKLLSALCILPQPE------DMNERVLEAM---------------TERAE--------MDEVERFQPLLDGLKS 227 (383)
T ss_dssp HHHHHHHHHHHHHHTCCSST------THHHHHHHHH---------------HHHHH--------HHTSCTTHHHHHTTST
T ss_pred HHHHHHHHHHHHHHhCcCcC------CcHHHHHHHH---------------HHHHH--------hCCCCcHHHHHHHHHc
Confidence 88888999999999874211 1222222222 11110 1223445667777765
Q ss_pred -CChhhHHHHHHHHHHhhcCCh------HHHHHHHHcCchHHHHHH
Q 016714 298 -PSATVLIPALRTVGNIVTGDD------AQTQFVIDNGVLPCLYQL 336 (384)
Q Consensus 298 -~~~~v~~~a~~~l~nl~~~~~------~~~~~i~~~g~l~~L~~l 336 (384)
.+...+..++..|..++.+.+ .....+...|+.+.+-.+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 456666667777766766543 223345567777776663
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.13 E-value=10 Score=34.16 Aligned_cols=89 Identities=10% Similarity=0.149 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714 89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL 168 (384)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 168 (384)
..+...+..++.++-.. ++. +-.++++.++++-.+.+ .+++...+..|...+....+. + ..+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el---~--~~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIEL---L--LKLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGG---H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHH
Confidence 47888889999876543 332 23568999999988887 899999999998887643333 2 2357788888
Q ss_pred hcCCCHHHHHHHHHHHHhhh
Q 016714 169 LSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 169 L~~~~~~v~~~a~~~L~nl~ 188 (384)
|.++++.+...++.+.+++.
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 99899999999998888873
No 131
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.40 E-value=9.1 Score=32.43 Aligned_cols=100 Identities=10% Similarity=0.108 Sum_probs=69.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
.+++.-+..........+...+.++... ++. ++ ..+++.++++-.+++ .+++...+..+...+....+..
T Consensus 19 ~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~---- 88 (257)
T 3gs3_A 19 DWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELL---- 88 (257)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH----
T ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHH----
Confidence 3333333433368888999999877653 222 11 346777888766666 8999999999988875433221
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
..+++.|..++.++++.+...++.+..++.
T Consensus 89 -~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 89 -PHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 235778888999999999999998888763
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.20 E-value=7.5 Score=35.82 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=121.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----c
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT-----S 150 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~-----~ 150 (384)
+..|+..+.|+|+..+...-..|..+... -...+.++...+-..+..++.......-..+.+.+++.|..|- .
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 66788888899988887777777766543 3334444444445556666644332345667888888887763 2
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHH-HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDD-VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
+.+..+ ...|+.+.+..... --.+..+++..+...++..... ++..|++.= ...+..=....+.-|..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 333222 23334444433322 2234556666655555433222 222232222 11122111223333444
Q ss_pred hhcCCCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH--cCChHHHHHhc-----CCCChh
Q 016714 230 FCRGKPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE--AGVCPRLVELL-----MHPSAT 301 (384)
Q Consensus 230 L~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~--~g~~~~L~~lL-----~~~~~~ 301 (384)
+...-+...+. ....++..+...+.+++..|.+.|+....| +.....+.+ ..++|.+..-| .|-+..
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~ 385 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT 385 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence 44433222232 236677778888899888888887644322 111212111 12456666655 234678
Q ss_pred hHHHHHHHHHHhhcCChHHHH
Q 016714 302 VLIPALRTVGNIVTGDDAQTQ 322 (384)
Q Consensus 302 v~~~a~~~l~nl~~~~~~~~~ 322 (384)
++..+..++.-+...++...+
T Consensus 386 V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 386 IHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHH
Confidence 999999999888776665443
No 133
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=88.47 E-value=6.9 Score=35.49 Aligned_cols=224 Identities=14% Similarity=0.124 Sum_probs=111.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-----
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS----- 150 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~----- 150 (384)
+-.|+..+.|+|+..+...-..|..+... -...+.++...+-..+..++-.+..-.-..+.+.+++.+..|-.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56677788888888777777767665432 23334444444445566655433222344567777777766532
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHH-HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDD-VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
+.+..+. ..|+.+-+..... --.+..+++..+...++..... ++..|++.= ...+..=....+.-+..
T Consensus 209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 3222222 2333333332222 2245556666666555543222 122222222 11122211223333444
Q ss_pred hhcCCCCCChhh-hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhc-----CCCCh
Q 016714 230 FCRGKPPTPFEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELL-----MHPSA 300 (384)
Q Consensus 230 L~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL-----~~~~~ 300 (384)
+...-+...+.. ...++..+...+.+++..|.+.|+....+ +... .++.. .++|.+...| .|-+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN-----e~i~-~li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc-----HHHH-HHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 444332222222 25667777888888888888877644311 1111 12211 2344443333 34578
Q ss_pred hhHHHHHHHHHHhhcCCh
Q 016714 301 TVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~ 318 (384)
.++..++.++.-+...++
T Consensus 352 ~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCH
Confidence 888888888887765443
No 134
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.76 E-value=18 Score=32.73 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=94.6
Q ss_pred chhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhH
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSS-----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLS 218 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~ 218 (384)
......+. .+++..|+.+|.. .+......++.||..+.-........+...+++..+...| .+..+.
T Consensus 38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~ 115 (386)
T 2bnx_A 38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 115 (386)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 44555554 4667777776642 1456788889999988766655555555556777777777 677778
Q ss_pred HHHHHHHHHhhhhcCCCCCC-hhhhhc------------hHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChH------H
Q 016714 219 MLRNATWTLSNFCRGKPPTP-FEQVKP------------ALPILQRLIH-LNDEEVLTDACWALSYLSDGPND------K 278 (384)
Q Consensus 219 ~~~~a~~~L~~L~~~~~~~~-~~~~~~------------~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~------~ 278 (384)
+...++..|..+|......- ...+-. -+..++..+. +.+.++...++..|..+....++ .
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~L 195 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 195 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 88888888988998753211 222211 2233555554 45677888888888777776552 1
Q ss_pred HHHHHHcCChHHHHHhcCCCChhh
Q 016714 279 IQAVIEAGVCPRLVELLMHPSATV 302 (384)
Q Consensus 279 ~~~~~~~g~~~~L~~lL~~~~~~v 302 (384)
...+...|+.+.+-.+=...++.+
T Consensus 196 R~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 196 RSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHCChHHHHHHHhccCChhH
Confidence 223556676666655544444443
No 135
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.34 E-value=15 Score=38.73 Aligned_cols=202 Identities=13% Similarity=0.095 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHhhhCC-----CCchhhHHHhcCCh
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL--SSGSDDVREQAVWALGNVAGD-----SPSCRDLVLSSGAL 204 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~i~~~g~i 204 (384)
++.+.+|-..|..+-.. ..+...+...| .+.+..++..|+..|-|.... +++.+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 67788887777766442 12344444433 356789999999999987632 122222222
Q ss_pred HHHHHHhccc------chhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---
Q 016714 205 MPLLAQLNEH------SKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG--- 274 (384)
Q Consensus 205 ~~L~~~l~~~------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~--- 274 (384)
..++..+... .+..++..++.+++.+.... |.. -..+++.++.++.+ ++.....++.+|..++..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444322 34567777888888887754 321 24677888887765 455566777787777642
Q ss_pred ----ChHHHH----HHHHc--CChHHHHHhcCC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHH
Q 016714 275 ----PNDKIQ----AVIEA--GVCPRLVELLMH-------------------PSATVLIPALRTVGNIVTGDDAQTQFVI 325 (384)
Q Consensus 275 ----~~~~~~----~~~~~--g~~~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~i~ 325 (384)
...+.. .+.+. .++..+..+|.. .+..+...++.++.+....-+- ..++
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 111111 11111 223333333322 1234667788888877655432 2233
Q ss_pred HcC--chHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 326 DNG--VLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 326 ~~g--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+.. +++.+..++. ++.++..|+-+|..++.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHT
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHh
Confidence 332 6777776654 45789999999999997
No 136
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.75 E-value=17 Score=31.48 Aligned_cols=146 Identities=10% Similarity=0.019 Sum_probs=86.9
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHH--cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714 76 IPSMVQGVWSE------DPALQLEATTQFRKLLSIERSPPIDEVIK--AGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 76 l~~lv~~l~s~------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 147 (384)
...+...++++ +......|+..|..+.. + -...-.+++ ..++..|+ +....+ +.+++.|+++++....
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-D-i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssLR 99 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-D-YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-S-HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-h-HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHHc
Confidence 44555566655 33445556666665532 2 333334443 23333444 333444 7899999999999999
Q ss_pred CCchhHHHHHhc--CChHHHHHhhcC-------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--h
Q 016714 148 GTSEHTRVVIEH--GAVPMFVQLLSS-------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--K 216 (384)
Q Consensus 148 ~~~~~~~~i~~~--g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~ 216 (384)
.||...+.+.+. ..+..++.-|.. ....++..-+.+|.-|..++..+ ...++..|.+++. .. +
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~-~~~~d 173 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYE-RNNKD 173 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHH-HTTTC
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHc-cCCCC
Confidence 999999988873 334444433322 23456666677777787765433 1346677777773 34 6
Q ss_pred hHHHHHHHHHHhhhh
Q 016714 217 LSMLRNATWTLSNFC 231 (384)
Q Consensus 217 ~~~~~~a~~~L~~L~ 231 (384)
..++..++..+..+-
T Consensus 174 ~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 174 KQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 667777766666555
No 137
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.05 E-value=28 Score=32.10 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=92.6
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
.+..++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++..+..+..
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 3445555678889999999999999999999988876655555544432 233444444222222223344555555555
Q ss_pred CCCCCChhhh-hchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 233 GKPPTPFEQV-KPALPILQRLIHLNDE-EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 233 ~~~~~~~~~~-~~~~~~L~~lL~~~~~-~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
+-..+-.+.. .-....|+.+.....- ........|+......++..... ++..|++.=-..++.=...-+.-|
T Consensus 234 Gfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 234 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp SCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence 5422221222 2222334444433321 12223334444443333332222 123333332222322222334444
Q ss_pred HHhhcC-ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHH
Q 016714 311 GNIVTG-DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT 352 (384)
Q Consensus 311 ~nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 352 (384)
..+... .+...+.+.. .++..+...+.++ ...|.+.|...
T Consensus 309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~ 349 (449)
T 2npp_B 309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYY 349 (449)
T ss_dssp HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 444432 3333333332 3566666667666 66666666543
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.53 E-value=2.5 Score=33.17 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=52.9
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.+++.|+..|..++..........+.....+..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999888777654233333455667788888888753347888887777765543
No 139
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=79.24 E-value=18 Score=31.29 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHH
Q 016714 134 LQFEAAWALTNVASGTSEHTRVVIE--HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLA 209 (384)
Q Consensus 134 ~~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~ 209 (384)
--..|+-.|..++.+ .+.--.+.+ ...+..|+ +....++.+++.+..+++.--.++|..-+.+.+. ..+..++.
T Consensus 44 ~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 344555566666664 333333332 22333333 3334567899999999999999988876666653 22333333
Q ss_pred Hhcc---c---chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC--CHhHHHHHHHHHHHhc
Q 016714 210 QLNE---H---SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN--DEEVLTDACWALSYLS 272 (384)
Q Consensus 210 ~l~~---~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~ 272 (384)
.|.. . ....++...+.+|..|..... .+ ....+..|.+++... ++.++..++..+..+-
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~--~F--~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE--DL--PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST--TC----CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH--hh--hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 3311 0 123566677778888877641 11 133556666666555 8888888888777665
No 140
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=78.98 E-value=22 Score=29.11 Aligned_cols=108 Identities=6% Similarity=-0.058 Sum_probs=67.0
Q ss_pred HHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714 246 LPILQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV 324 (384)
Q Consensus 246 ~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 324 (384)
++.+-.++. -++..+....|.+++.+....++ .+.+.+..+..+++.-++..|+..+ +..........
T Consensus 91 l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~- 159 (220)
T 2b6c_A 91 VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------ELPTIFALFYGAENFWNRRVALNLQ--LMLKEKTNQDL- 159 (220)
T ss_dssp HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------GHHHHHHHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH-
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------HHHHHHHHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH-
Confidence 333344443 34556655555556655433222 1345678888999988888876644 32222222222
Q ss_pred HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714 325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS 369 (384)
Q Consensus 325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~ 369 (384)
.++.+..++.++ +..|++...|+|..+...+++.+...+.
T Consensus 160 ----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 160 ----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp ----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 244445567777 8999999999999999988887777663
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.03 E-value=2 Score=32.73 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPP-IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA 146 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~ 146 (384)
+++..+.+.|++.++.+++.|+..|..++... ... ...+.....+..|+.+++..+ +.++..++..+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHH
Confidence 45677777888888889998888887776544 333 334445566777777776665 788888777776554
No 142
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=77.67 E-value=28 Score=31.44 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=98.4
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
+..++...+..|+.++.++++.-|+....+|..+-+.....|..+... +-..+.+.+.......-...++..+..+..+
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 344455567889999999999999999999988876555555544332 3344555553322222334455555555555
Q ss_pred CCCCChhhh-hchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 234 KPPTPFEQV-KPALPILQRLIHLNDE-EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 234 ~~~~~~~~~-~~~~~~L~~lL~~~~~-~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
-..+-.+.. .-....|+.+.....- ..-.....|+......++..... ++..|++.=-..++.=...-+.-|.
T Consensus 247 fa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 247 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 422222222 2223344444443321 22233344444444444433322 2333333332222222233444444
Q ss_pred HhhcC-ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 312 NIVTG-DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 312 nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
.+... .++..+.+.. .++..+...+.++ ...|.+.|....
T Consensus 322 eiLe~~~~~~f~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 44433 3444443332 3677788888887 777877775443
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.13 E-value=3.5 Score=31.71 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=55.9
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-----DMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.+++.|+..|..++..........+....++..|+.++... .++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999887765233345566778888999988741 137888888877766554
No 144
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=76.99 E-value=33 Score=28.98 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=94.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.++....+.+.+++...+..+....... .... ..+++.|..+|.+++ +.+...+..+.+++-. ..-+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~-----~~~l~~L~~Ll~d~d-~~V~K~~I~~~~~iY~---~~l~ 123 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELL-----PHVINVVSMLLRDNS-AQVIKRVIQACGSIYK---NGLQ 123 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGH-----HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH---HHHH
Confidence 4677777666778889999998888776432 2222 235788888888776 8888888887776521 1122
Q ss_pred HHHhcC---------------ChHHHHHhhcCCCHHHHHHHHHHHHhhh--CCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714 155 VVIEHG---------------AVPMFVQLLSSGSDDVREQAVWALGNVA--GDSPSCRDLVLSSGALMPLLAQLNEHSKL 217 (384)
Q Consensus 155 ~i~~~g---------------~i~~L~~lL~~~~~~v~~~a~~~L~nl~--~~~~~~~~~i~~~g~i~~L~~~l~~~~~~ 217 (384)
.+...+ .=..++.++.+.+..++..|+..+..+. ...+.. + .. ..++
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~-~---~~-----------~~~~- 187 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADE-D---SL-----------KRDG- 187 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCT-T---SC-----------CCTT-
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCc-c---cC-----------CCCC-
Confidence 222211 2234455556666667666666655543 110000 0 00 0000
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhhh----hchHHHHHHhhccC--CHhHHHHHHHHHHHhccCChHHHHH
Q 016714 218 SMLRNATWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLN--DEEVLTDACWALSYLSDGPNDKIQA 281 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~~~~~~~~~~ 281 (384)
-+.|..+-.+.|-...... .+.+..|+.++.++ +......++.+|+.++...+.....
T Consensus 188 ------d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~r 251 (257)
T 3gs3_A 188 ------DFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGA 251 (257)
T ss_dssp ------CCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred ------CCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 0112222222222222222 56677777766654 3445667778888887766554433
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.60 E-value=4.2 Score=31.26 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=55.1
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR------HDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.+++.++.+++.|+..|..++..........+....++..|+.++.. .+ +.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4577888889999999999999998887765523334556667788889999864 34 7888888888876654
No 146
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=74.64 E-value=12 Score=31.50 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc-------cchhHHHHHHHHHHhhhhcCC--CCCChhh
Q 016714 171 SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE-------HSKLSMLRNATWTLSNFCRGK--PPTPFEQ 241 (384)
Q Consensus 171 ~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~-------~~~~~~~~~a~~~L~~L~~~~--~~~~~~~ 241 (384)
+.++..+-.++.+++|+..+....+..+........++..+.. ..+..++..++..+.|++... .....+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4567889999999999998876445555443234445554421 135668888888888888742 1112222
Q ss_pred hhchHHHHHHhhc-----cCCHhHHHHHHHHHHHhccCC
Q 016714 242 VKPALPILQRLIH-----LNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 242 ~~~~~~~L~~lL~-----~~~~~i~~~a~~~l~~l~~~~ 275 (384)
...++..+...+. ..|++....++-++++|...+
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 2333444443321 247889999999999987543
No 147
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=73.03 E-value=54 Score=29.65 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLV 198 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i 198 (384)
+..++...+-.|+.++.++++.-|+..-.+|..+-+.....|..+
T Consensus 123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~I 167 (403)
T 3fga_B 123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYI 167 (403)
T ss_dssp TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 444445567789999999999999999999988876555444433
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.95 E-value=3.2 Score=34.51 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=52.8
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 147 (384)
+++..|.+.|++.++.+|+.|+..|..++.........++.....+..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45778888899999999999999888776654222344455566777777777654337888888877776653
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=68.55 E-value=5.5 Score=31.42 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=54.1
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-----HDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.+++.|+..|..++..........+....++..|+.++.. ..++.++..++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999887765423334456667788889998863 1237888888887776654
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=67.33 E-value=22 Score=36.64 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=107.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc---cchhHHHHHHHHHHhhhhcCC-CC
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE---HSKLSMLRNATWTLSNFCRGK-PP 236 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~L~~~~-~~ 236 (384)
.+.-|+.+--+.-.+|+..|-.+|......-+..+.. +++.+++.|.. ..+.+-..-|+++|..-.... -.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 3556667667788999999999999988776655544 46778887755 445566677777665111110 11
Q ss_pred CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC------------------------hHHHHHH----------
Q 016714 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP------------------------NDKIQAV---------- 282 (384)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~------------------------~~~~~~~---------- 282 (384)
........+++.|++....+.+.++..+-.+...+...- ...+...
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 234445677778888777766666554444333322210 0000000
Q ss_pred HH---cCChHHHHHhc-CCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 283 IE---AGVCPRLVELL-MHPS--ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 283 ~~---~g~~~~L~~lL-~~~~--~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
.. .++...|+..+ .... ......+++.+.++....+.. ....++..+.+.+.++ .+.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~----~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK----PDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC----CCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 00 12333344444 2233 556666667755555322110 1112455677777787 899999999888777
Q ss_pred hc
Q 016714 357 TA 358 (384)
Q Consensus 357 ~~ 358 (384)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 151
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=67.31 E-value=27 Score=31.83 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc
Q 016714 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFV-QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE 213 (384)
Q Consensus 135 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~ 213 (384)
++-++-+|.-++.+.+.. +.+..++ ..+.+.++..+-.++.+++|+.......+..+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 444555665555432211 1222233 23335678889999999999998776333443322234556665521
Q ss_pred -------cchhHHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhc---------cCCHhHHHHHHHHHHHhccCC
Q 016714 214 -------HSKLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPILQRLIH---------LNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 214 -------~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~lL~---------~~~~~i~~~a~~~l~~l~~~~ 275 (384)
..+..++..++.++.|++... ..... ..++.+..++. ..|.+....++-||++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~----el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCT----THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 225568888888888988752 11111 23334444443 358899999999999998644
Q ss_pred h
Q 016714 276 N 276 (384)
Q Consensus 276 ~ 276 (384)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 152
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=66.87 E-value=74 Score=29.51 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=90.3
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 016714 76 IPSMVQGVWSE------DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT 149 (384)
Q Consensus 76 l~~lv~~l~s~------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 149 (384)
++.+.+.|.++ |++. .+..+.++++ .-+-+.+++.=-+..++..|.+++ +.+...|+.++. .
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~---~~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~ 142 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDY---LLDVVDKLVP---MADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----N 142 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHH---HSCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----T
T ss_pred HHHHHHHHcCCccccccCHHH---HHHHHHHHHh---cCCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----c
Confidence 45555556322 3454 3344555554 244567777778999999999987 899999999988 2
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHH---HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSSGSDD---VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWT 226 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 226 (384)
+.-+..+...+++..++.++..++.. +....=.++..++.+. -+|..+.+. .. +++..++...++-+.....-.
T Consensus 143 s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssde-Lirrril~n-nl-~lL~~vK~~~~~i~~sRLLdl 219 (500)
T 3vld_A 143 SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDE-LIRRRLFDN-NL-PYLVSVKGRMETVSFVRLIDF 219 (500)
T ss_dssp CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHHH
T ss_pred cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchH-HHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHHH
Confidence 45566777889999999998775433 6666666777775443 245556653 33 455555444455444444444
Q ss_pred HhhhhcC
Q 016714 227 LSNFCRG 233 (384)
Q Consensus 227 L~~L~~~ 233 (384)
+.-+...
T Consensus 220 l~il~~~ 226 (500)
T 3vld_A 220 LTIEFQF 226 (500)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 4444443
No 153
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.86 E-value=11 Score=29.40 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=51.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
++..|.+-|.+.++.++-.|+..|-.+..++ +.++..+....+++.|+.++....++.++..++..+..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556677778888999888888888877653 44666677777888888888544566777777666655544
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.38 E-value=5.2 Score=33.05 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=50.1
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA 146 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~ 146 (384)
+++..+.+.|++.++.+++.|+..|..++..........+.....+..|+.++.+..++.++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567788888899999999999988887764312223344455677777777764333778777776665544
No 155
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=62.20 E-value=89 Score=28.08 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=75.5
Q ss_pred hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh-----
Q 016714 240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV----- 314 (384)
Q Consensus 240 ~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~----- 314 (384)
.....+++.++.+-...+.+++..++..|...+....+... .+++.|..+|.++++.+...++.+.+++-
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999998888999999999888887765444332 34678888888889999988888888763
Q ss_pred ---cCC--hHHHHHHHHc--CchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 315 ---TGD--DAQTQFVIDN--GVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 315 ---~~~--~~~~~~i~~~--g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
.+. +......++. .+-..++.++.+. +..+|-.|...+..+.
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSD-NDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHH
Confidence 111 1111122211 2344556666666 7778777776666655
No 156
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=61.57 E-value=30 Score=30.89 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-
Q 016714 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN- 212 (384)
Q Consensus 135 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~- 212 (384)
++-++-+|.-++.+.+. .+.+..++. .+.+..+..+-.++.+++|+.......+..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 45566666655553221 122333332 333567888999999999999877633333322112334455442
Q ss_pred ------ccchhHHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhc---------cCCHhHHHHHHHHHHHhccCC
Q 016714 213 ------EHSKLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPILQRLIH---------LNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 213 ------~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~lL~---------~~~~~i~~~a~~~l~~l~~~~ 275 (384)
...+..++..++..+.|++... ..... ..++.+..++. ..|++....++-|+++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~----el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCT----THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1225668888888888888742 11111 23344444444 358899999999999998544
Q ss_pred h
Q 016714 276 N 276 (384)
Q Consensus 276 ~ 276 (384)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=61.45 E-value=13 Score=33.54 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT 149 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 149 (384)
+..|+..+.|+|+..+...-..|..+... -...+.++...+-..+..++.......-..+.+.+++.|..|.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 56677777788877777766666655432 2344444444455566666654332345566777777776654
No 158
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=58.74 E-value=2.3 Score=37.46 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=28.1
Q ss_pred chhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhcc
Q 016714 8 RAEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREG 52 (384)
Q Consensus 8 ~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~ 52 (384)
....|+..||+ +...+ ..+ |++...+..|+||.+.+...|+..
T Consensus 28 a~HPR~sqyK~k~~~~~-Q~~-RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLE-QSE-RRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCS-CCH-HHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhh-HHH-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 44579999998 44433 333 334566888999999999999864
No 159
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.68 E-value=14 Score=27.89 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=63.8
Q ss_pred hccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCchH
Q 016714 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ-FVIDNGVLP 331 (384)
Q Consensus 253 L~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~ 331 (384)
+..+|.....+.|..+.. ....-. .++..|.+-|.+.++.++..|+..|-.++........ .+-+..+++
T Consensus 18 l~~~dw~~ileicD~I~~---~~~~~k------~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ---SRTGPK------DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT---STTHHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC---CCcCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 345566666666666553 111111 2367788888999999999999998888766544333 444456777
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 332 CLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 332 ~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
.|..++... ++.|++.+.-.+..-+
T Consensus 89 el~~l~~~~-~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 89 EVSNVLNKG-HPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 788888766 7889988866666655
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=54.78 E-value=27 Score=36.01 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=41.9
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----CCCHHHHHHHHHHHH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----SGSDDVREQAVWALG 185 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~ 185 (384)
++.-|+++--+.. ++++..|-.+|..+...-+..+..+ +|.+++.|. +.+.+-.+.|+++|.
T Consensus 134 ll~dL~~Ls~S~Y-~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~ 199 (997)
T 1vsy_5 134 LLVDIIQLATSLY-PDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLL 199 (997)
T ss_dssp HHHHHHHHHTSSC-HHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHh
Confidence 4666777666666 8999999999999887655555444 455555553 345555677777766
No 161
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=53.76 E-value=14 Score=31.09 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh
Q 016714 91 QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEF-LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169 (384)
Q Consensus 91 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL 169 (384)
++-++-.+|-++... +. .+.+..++.. +.+.+ +..+.-++++++|+..+....+..+........++..+
T Consensus 71 ~fP~lDllRl~~~~~--~~------~~~l~~~l~~~~~~~~-~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 71 KTPAYDIVRLIVKKL--PY------SSDIKDYIEEGLGNKN-ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp CHHHHHHHHHHGGGC--SC------GGGGHHHHHHHTTCSS-HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred cchHHHHHHHHHcCC--ch------HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 455666666554432 11 1334444333 33344 88999999999999886432455554432344444433
Q ss_pred cC--------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------cchhHHHHHHHHHHhhhhcC
Q 016714 170 SS--------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------HSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 170 ~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------~~~~~~~~~a~~~L~~L~~~ 233 (384)
.+ ++..++..++..+.|++......+. +......+++.+.. ..+.+....++-+|.+|...
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 21 3567888999999999842110000 11233455555532 23667777788888888864
Q ss_pred C
Q 016714 234 K 234 (384)
Q Consensus 234 ~ 234 (384)
+
T Consensus 219 ~ 219 (253)
T 3gae_A 219 E 219 (253)
T ss_dssp S
T ss_pred c
Confidence 3
No 162
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.60 E-value=52 Score=25.73 Aligned_cols=112 Identities=11% Similarity=0.033 Sum_probs=73.5
Q ss_pred ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCchHH
Q 016714 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ-FVIDNGVLPC 332 (384)
Q Consensus 254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~~ 332 (384)
..+|.....+.|..+..=. ..-. .++..|.+-|.+.++.++..|+..|-.++..+..... .+-+..+++.
T Consensus 27 ~~~Dw~~ileicD~I~~~~---~~~k------~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKEL---EGPQ------IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHHHHHHHHHHHHHST---THHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCC---ccHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 4556777777777666532 1111 2356788888999999999999999999877654443 4555678888
Q ss_pred HHHHhccC-----CchhHHHHHHHHHHHHhc---CCHH---HHHHHHhCCccc
Q 016714 333 LYQLLTQN-----HKKSIKKEACWTISNITA---GNRA---QIQVHDSFHLFV 374 (384)
Q Consensus 333 L~~ll~~~-----~~~~v~~~a~~~L~nl~~---~~~~---~i~~l~~~~~ll 374 (384)
|.+++... .+..|++.+.-.+..-+. +.+. .-+.|...|+..
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk~~G~~f 150 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQ 150 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSCS
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHCCCCC
Confidence 99998631 157888887666666553 3332 223455667744
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.83 E-value=16 Score=30.24 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=53.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
++..|.+-|.+.++.++-.|+..|-.+..+.. .+...+....+++.|..++....+..+...++..+...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 45667777888899999999988888875433 35566666677778888876556777888777777666553
No 164
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.54 E-value=17 Score=29.93 Aligned_cols=71 Identities=7% Similarity=0.072 Sum_probs=50.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
++..|.+-|.+.++.++-.|+..|-.+..+. +.++..+....+++.|..++....+..++..++..+..-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4556677777889999999998888887654 3466666666778888887755556667766665554444
No 165
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.11 E-value=30 Score=26.36 Aligned_cols=72 Identities=14% Similarity=0.007 Sum_probs=54.6
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH-HHHHHHHcCChHHHHHhcCC------CChhhHHHHHHHHHHhh
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPND-KIQAVIEAGVCPRLVELLMH------PSATVLIPALRTVGNIV 314 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~-~~~~~~~~g~~~~L~~lL~~------~~~~v~~~a~~~l~nl~ 314 (384)
..++..|.+-|.+.++.++..|+..|-.+..++.. ....+.+..++..|+.++.. .+..|+..++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999888877544 33455566888889988863 35678888777776654
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=50.22 E-value=17 Score=33.15 Aligned_cols=105 Identities=10% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHhhcCC-------CChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRH-------DMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
+..+..++-+++.+.|+.+. ......++.. .....+++.+... .+..++..++..+.|++......+.
T Consensus 273 ~~~~an~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-- 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--
T ss_pred CCChhHHHHHHHHHHHhcCC--cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 45688999999999999864 3324444432 3355666655321 0257889999999999873211110
Q ss_pred HhcCChHHHHHhhc---------CCCHHHHHHHHHHHHhhhCCCCch
Q 016714 157 IEHGAVPMFVQLLS---------SGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 157 ~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
+......+..++. ..+.+..-.++-|||+|...++..
T Consensus 349 -~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 349 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 1223445555555 257889999999999998654433
No 167
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=49.17 E-value=23 Score=29.28 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=53.6
Q ss_pred ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714 287 VCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366 (384)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~ 366 (384)
..+.+..++.+++.-++..|+..+ +......... ..++.+...+.++ +..|++...|+|..+...+++.+..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 456778888888988888876554 2221111111 1334455667777 8999999999999999988888887
Q ss_pred HHhCC
Q 016714 367 HDSFH 371 (384)
Q Consensus 367 l~~~~ 371 (384)
.++.+
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77654
No 168
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=48.23 E-value=22 Score=27.46 Aligned_cols=74 Identities=8% Similarity=-0.036 Sum_probs=48.4
Q ss_pred cCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH-HHHhhcCC-C-ChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPR-FVEFLGRH-D-MPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~-Lv~lL~~~-~-~~~~~~~a~~~L~nl~~ 147 (384)
+++..+.+.|+ +.++.+++.|+..|..++..........+.....+.. |+.++... + ...++..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 35677777887 4788888999888887776542333334556677777 77877432 1 24777777776665543
No 169
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.26 E-value=53 Score=25.02 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=63.9
Q ss_pred ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH-HHHHHcCchHH
Q 016714 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT-QFVIDNGVLPC 332 (384)
Q Consensus 254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~i~~~g~l~~ 332 (384)
..+|.....+.|..+..= ...-. .++..|.+-|.+.++.++..|+..|-.++....... ..+-+..+++.
T Consensus 25 ~~~dw~~ileicD~I~~~---~~~pk------~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e 95 (149)
T 3g2s_A 25 KELDWASINGFCEQLNED---FEGPP------LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE 95 (149)
T ss_dssp SSCCHHHHHHHHHHGGGS---SSHHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHCC---CCcHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 445666666666655432 11111 235678888899999999999999999987655443 44555578888
Q ss_pred HHHHhccC-----CchhHHHHHHHHHHHHh
Q 016714 333 LYQLLTQN-----HKKSIKKEACWTISNIT 357 (384)
Q Consensus 333 L~~ll~~~-----~~~~v~~~a~~~L~nl~ 357 (384)
|.+++... .+..|+..+.-.+..-+
T Consensus 96 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 96 LIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 99998631 26788888766666655
No 170
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=46.97 E-value=1.1e+02 Score=24.57 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=63.8
Q ss_pred ChHHHHHhhcC------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--hhHHHHHHHHHHhhhhc
Q 016714 161 AVPMFVQLLSS------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFCR 232 (384)
Q Consensus 161 ~i~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~L~~ 232 (384)
.+|.++.++.+ .+.......+.....+..+..-.-+. .-+-.+|+++.++.... ...++..|+..+..+|+
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lep-YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDP-YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGG-GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 56777766543 35555555566655555443211111 11226777777774322 22789999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccC--CHhHHHHHHHHHHHhc
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLN--DEEVLTDACWALSYLS 272 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~ 272 (384)
............+...+.+.+.++ +.....-|++.|..+-
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 653333333355666666666543 3456666767776663
No 171
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=45.26 E-value=20 Score=21.10 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHhhh
Q 016714 24 EARRRREDNLVEIRKNKRE 42 (384)
Q Consensus 24 ~~r~~r~~~~~~lRk~kr~ 42 (384)
+.|++.++....+||.|+.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4588888888899988775
No 172
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.77 E-value=17 Score=32.45 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHhhcC--------CCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGR--------HDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
+..+..++-+++.+.|+.+. ......++.. .....+++.+.. .+ ..++..++..+.|++......+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~n-kNl~IA~ATL~lNlAv~~~~~~~- 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQS-QNLAIAVSTLIFNYSALVTKGNS- 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHH-HHHHHHHHHHHHHHHHHHHHTCS-
T ss_pred CCChhHHHHHHHHHHHhccC--cchHHHHHhcchhHHHHHHHHHHHhhhcccCCC-chHHHHHHHHHHHHHHHHhcccc-
Confidence 55688999999999999764 3324444432 123445554421 12 57899999999999873211110
Q ss_pred HHhcCChHHHHHhhc---------CCCHHHHHHHHHHHHhhhCCCCc
Q 016714 156 VIEHGAVPMFVQLLS---------SGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 156 i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
+....+.+..++. ..+++..-.++-|||+|...++.
T Consensus 286 --~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 286 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp --CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred --hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1223455666655 25888999999999999864443
No 173
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=41.97 E-value=79 Score=23.94 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHHHcCChHHHHHhcCC------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHH
Q 016714 279 IQAVIEAGVCPRLVELLMH------PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACW 351 (384)
Q Consensus 279 ~~~~~~~g~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~ 351 (384)
...+++.|++..+-.+|.. ++..++...+.+|.++-- + ...+.++|+-..+..+-.++. .+.+|+-|--
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI-~---~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI-H---KEHLVTSGVGKIVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-C---HHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC-C---HHHhhcCCCCcchhhhhcCCccCHHHHHHHHH
Confidence 4567889999999999853 467899999999999842 2 345666777666666665552 4567777765
Q ss_pred HHHHH
Q 016714 352 TISNI 356 (384)
Q Consensus 352 ~L~nl 356 (384)
.+..-
T Consensus 130 Li~~W 134 (145)
T 2xpp_A 130 LVQKW 134 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 174
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=40.84 E-value=1.4e+02 Score=29.86 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=72.1
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--cchhHHHHHHHHHHh
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--HSKLSMLRNATWTLS 228 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~ 228 (384)
+.++.+++. ..|.+..-+.+.+..+...+..+|.++|.-.|.+.+.++. ++++.+...|.. -..+.-...++.+|.
T Consensus 331 ~~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 331 FCHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 444555542 4566666677889999999999999999877755555443 244444444422 234445556666666
Q ss_pred hhhcCCC-CCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 229 NFCRGKP-PTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 229 ~L~~~~~-~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
.+++.-. ... ...+..++..++.-+..+|+.--..++..+..++
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 6665321 111 1223455556666678888876666666666554
No 175
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=38.45 E-value=67 Score=26.52 Aligned_cols=76 Identities=5% Similarity=-0.006 Sum_probs=53.8
Q ss_pred hHHHHHhcCCCChhhHHHHHH----HHHHhhcC--ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714 288 CPRLVELLMHPSATVLIPALR----TVGNIVTG--DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR 361 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~----~l~nl~~~--~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 361 (384)
.+.+..+..+++.-.+..+.. .++.+... ++..... +++.+...+.+. +.-+++.+.|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~-----~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISD-----MLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHH-----HHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHH-----HHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 456777788888888888877 55553211 2223332 455566678888 89999999999999998777
Q ss_pred HHHHHHHh
Q 016714 362 AQIQVHDS 369 (384)
Q Consensus 362 ~~i~~l~~ 369 (384)
+.....++
T Consensus 184 ~~~~~al~ 191 (235)
T 1t06_A 184 PLHEKAVE 191 (235)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 176
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=33.80 E-value=4.6e+02 Score=27.89 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=76.6
Q ss_pred HHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 016714 208 LAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV 287 (384)
Q Consensus 208 ~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~ 287 (384)
.+.|..+.++.+...+......+-.... ......++..|+....+.+..-...|+..|..|+...+...... +-.
T Consensus 405 a~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~--a~~ 479 (1323)
T 3s4w_B 405 AQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLN--AAF 479 (1323)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHT--HHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHH--HHH
Confidence 3334355667776666666555555421 12225667777776666655555668888888886555433321 112
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHH----HHHHHHHHhc
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKE----ACWTISNITA 358 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~----a~~~L~nl~~ 358 (384)
+..++..+.+-+..-......+|+.++.........-+...+.-.+.+-|.++ +...|+- |+-.+..+++
T Consensus 480 l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~-~~~~KriGIIGav~~v~~~~~ 553 (1323)
T 3s4w_B 480 VKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSST-VFKYKLIGIIGAVTMAGIMAE 553 (1323)
T ss_dssp HHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCC-chhhhhhhHHHHHHHHHHHHH
Confidence 44445555555555556678888888753211100011112233355566666 5666654 4444444444
No 177
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=29.62 E-value=2.8e+02 Score=24.10 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------cchhHHHHHHHHHHhhhhcCCCCCChhhhhch
Q 016714 174 DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA 245 (384)
Q Consensus 174 ~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (384)
..++...+..+.......+.. +.+. ...+++|++.... ..++++....+..+..+-..-..........+
T Consensus 43 R~vKkeiLkLiet~i~~~~d~-~~v~-~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~V 120 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDP-QMVA-ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-HHHH-HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCH-HHHH-HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 346666666666666554432 2222 3478888864421 12456666555555555433221112222444
Q ss_pred HHHHHHhhcc---CCHhHHHHHHHHHHHhccCC--------hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 246 LPILQRLIHL---NDEEVLTDACWALSYLSDGP--------NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 246 ~~~L~~lL~~---~~~~i~~~a~~~l~~l~~~~--------~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
+..-+.++.. +-|+.+..-...|..+..++ ++... .+++.++...+|+...+...++.++-.+.
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fk-----lvidsiiWa~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK-----LVLDSIIWAFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 4444555553 34777777666666655432 22222 34678888889999999988888776654
No 178
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.50 E-value=2.3e+02 Score=22.66 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=74.9
Q ss_pred ChHHHHHHhcc-----cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC---CHhHHHHHHHHHHHhccC
Q 016714 203 ALMPLLAQLNE-----HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN---DEEVLTDACWALSYLSDG 274 (384)
Q Consensus 203 ~i~~L~~~l~~-----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~---~~~i~~~a~~~l~~l~~~ 274 (384)
.+|.++..+.+ -.+.........+...|..++.-.-......++|.++.++-.. ...++..|+..++.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 45556555532 1256677777888888888754444555688889877776322 237999999999999864
Q ss_pred ChHHHHHHHHcCChHHHHHhcCCCCh--hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 275 PNDKIQAVIEAGVCPRLVELLMHPSA--TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 275 ~~~~~~~~~~~g~~~~L~~lL~~~~~--~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
...... -....+...+.+.+.+++. ...--|+..|..+-. + .+..-++|.+..+.+.-
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~---~----~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK---N----VVNTVIREHAEEYKRTI 180 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH---H----HHHTHHHHHHHHHHHHT
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH---H----HHHHhhhcCHHHHHHHH
Confidence 221111 1223455666666655433 333445555555432 2 23333456666665543
No 179
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.76 E-value=79 Score=24.22 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=45.2
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHH-HHHHhcc--cchhHHHHHHHHHHhhhh
Q 016714 161 AVPMFVQLLS-SGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMP-LLAQLNE--HSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 161 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~-L~~~l~~--~~~~~~~~~a~~~L~~L~ 231 (384)
++..|.+-|. +.++.++-.|+..|-.+..++ +.++..+....+++. |+.++.. .++..++..++..+..-.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4556667776 478888888888888777654 446666666667777 6777632 223456666555554433
No 180
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=23.14 E-value=2.4e+02 Score=21.21 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=53.1
Q ss_pred CcHHHHHHcCCHHHHHHhhcCCC-----ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHH
Q 016714 108 PPIDEVIKAGVVPRFVEFLGRHD-----MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQA 180 (384)
Q Consensus 108 ~~~~~~~~~g~i~~Lv~lL~~~~-----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a 180 (384)
.-...+++.|++..+-..|..-. +..++...+.+|.++- -.++.+.++|+-..++.+-.+ +.++.+..|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 44566788899999999887411 2789999999999873 346777787766666665555 456777776
Q ss_pred HHHHHh
Q 016714 181 VWALGN 186 (384)
Q Consensus 181 ~~~L~n 186 (384)
-..+..
T Consensus 128 ~~Li~~ 133 (145)
T 2xpp_A 128 KALVQK 133 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 181
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.55 E-value=1.7e+02 Score=21.88 Aligned_cols=87 Identities=7% Similarity=-0.042 Sum_probs=55.9
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHH
Q 016714 256 NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ 335 (384)
Q Consensus 256 ~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ 335 (384)
+-+.|..-..||+.+.- ... .++..+.+.+....+.-+.+++..+-.|+..........+..++.+.+..
T Consensus 23 Sk~~I~~LT~~a~~~~~-----~a~-----~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 23 SRPIITTLTKLAEENIS-----CAQ-----YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CHHHHHHHHHHHHHTGG-----GHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 33556666777776642 112 23445555555567788889999999998654333345667788888888
Q ss_pred HhccCCchhHHHHHHHHH
Q 016714 336 LLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 336 ll~~~~~~~v~~~a~~~L 353 (384)
..... ++..|......+
T Consensus 93 ~~~~~-d~~~r~k~~rL~ 109 (144)
T 1sz9_A 93 TYLLV-DNTTRTKLINMF 109 (144)
T ss_dssp HHHTS-CHHHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHHHH
Confidence 88776 667776654433
No 182
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=20.58 E-value=6.4e+02 Score=25.10 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHhhh---CCCC
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS---GSDDVREQAVWALGNVA---GDSP 192 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~---~~~~ 192 (384)
.|.+...+-+.+ ..+...+..+|.++|.-.|.+.+.++. +++..+-.-|.. ..+.-...++.+|..++ ...+
T Consensus 341 ~p~~~~g~fSK~-~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 341 LNIISLGSQNKN-PDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHhCcCC-cchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 444444455666 788899999999999977766666665 456666666655 45666666777777665 2223
Q ss_pred chhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhc
Q 016714 193 SCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 193 ~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~ 232 (384)
.+|.. +.+++.++. +..|+.-....+..+..++.
T Consensus 419 ~yr~h------l~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 LYRVH------ITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TGGGH------HHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHH------HHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 34432 233333332 34455544455555555544
Done!