BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016715
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia
amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
Length = 284
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 164/276 (59%), Gaps = 16/276 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
A+EKD L RE RF + QL++ ED + + + S R AKV+AN
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
+P++++T ++ +++ +FS + +++QEE A R+ P S+Y IF+NFYS+P
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPR 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
Y F V R F+P PKVD+A+V +LK+ P + FF + +AF +RKMLR SL+
Sbjct: 184 YGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLK 240
Query: 344 HLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
L +I AL +G +RPE L+L+DF+KL++
Sbjct: 241 SLFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYH 276
>sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
felis (strain Fe/C-56) GN=rsmA PE=3 SV=1
Length = 284
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 155/270 (57%), Gaps = 18/270 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 84
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++I+T ++
Sbjct: 85 ---MFEE---TLKQLPIDLEITDACKYPLSQL----QEKGWQGKGRVVANLPYHITTPLL 134
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + + +++Q+E A R+ +P EY + IF+ F+++ Y FKV
Sbjct: 135 TKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSSGC 192
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
FFP+P+V +AVV +K +P S K FFS+ +AF +RK+L +L++L +
Sbjct: 193 FFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSLTRAAFGQRRKLLANALKNLYPKDLV 250
Query: 352 EKALGDVGLPATSRPEELTLDDFVKLHNLI 381
AL + +RPE L+LD+++KL L+
Sbjct: 251 FSALNQLNFSEKTRPETLSLDEYLKLFQLL 280
>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
caviae (strain GPIC) GN=rsmA PE=3 SV=1
Length = 278
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 159/274 (58%), Gaps = 19/274 (6%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+GR P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17 QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
KD + LK L D + LS E K G +VVAN+P++I+
Sbjct: 76 KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124
Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F+++ Y FKV
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKV 182
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCT 347
FFP+P+V +AVV +K+ +P TS + FFS+ +AF +RK+L +L+ L
Sbjct: 183 SPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSLTRAAFGQRRKLLANALKDLYP 240
Query: 348 SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+ AL + +RPE L+L+++++L +L+
Sbjct: 241 KELVFSALNQLNFSEKTRPETLSLNEYLQLFHLL 274
>sp|Q9Z6K0|RSMA_CHLPN Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
pneumoniae GN=rsmA PE=3 SV=1
Length = 277
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 156/267 (58%), Gaps = 16/267 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L D + V +++Q+E A R+V +P R +Y + IF+ F+++ Y FKV +
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F+P+P+V +AV+ K+K+ + FF++ +AF +RK+L +L+ L ++E
Sbjct: 187 FYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVE 245
Query: 353 KALGDVGLPATSRPEELTLDDFVKLHN 379
+AL ++GL RPE L+L+D++ L +
Sbjct: 246 QALKELGLLLNVRPEVLSLNDYLALFH 272
>sp|Q5L6H5|RSMA_CHLAB Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
abortus (strain S26/3) GN=rsmA PE=3 SV=1
Length = 278
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 155/272 (56%), Gaps = 17/272 (6%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 D----SMLEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++++L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 126 PLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVS 183
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P+P+V +AVV +K+ TK FFS+ +AF +RK+L +L+ L
Sbjct: 184 PGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKE 242
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+ +AL + +RPE L+LDD++KL L+
Sbjct: 243 RVFEALSQLHFSDKTRPETLSLDDYLKLFYLL 274
>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella
thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1
Length = 288
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 146/276 (52%), Gaps = 5/276 (1%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIE D+ + + E A D ++++ D +K + + + KVVA
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+EP
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEP 187
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVPRT F+P+P+VD+ V+ + V FF +V +AFN +RK + +L
Sbjct: 188 AVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILNAL 246
Query: 343 QHLC-TSLEIEKALGDVGLPATSRPEELTLDDFVKL 377
L +I +AL G+ R E L +++F +
Sbjct: 247 GSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASI 282
>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3
SV=1
Length = 292
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVA
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRK 340
+ VP+T F PQP VD+AV+ L++ PAV + FF +V ++F +RK L
Sbjct: 185 KTVMNVPKTVFVPQPNVDSAVIRLTLRKE---PAVAVQDAAFFFQVVKASFAQRRKTLFN 241
Query: 341 SL-QHLCTSLE----IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
+L +L E IE+AL D + R E L++++F L + + +V
Sbjct: 242 NLVNNLPNGKENKSKIERALQDSHIDGKRRGESLSIEEFAVLSDRLREV 290
>sp|Q9PK40|RSMA_CHLMU Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=rsmA PE=3 SV=1
Length = 277
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 167/291 (57%), Gaps = 21/291 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + +K++N + + K+L Q+++++ I ++ A A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VL++ GA V+A+EKD S+ QL + E C + + SL + K
Sbjct: 59 ALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--K 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + + V +++Q+E A R+ P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITANPG--DKDYSS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSA 330
+ +F+ F+++ +Y FKV F+P+P V +AVV ++ + D+P S FF++ +A
Sbjct: 166 LTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAA 223
Query: 331 FNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
F +RK+L SL++L ++ + L +G +RPE ++L++++K+ L+
Sbjct: 224 FGQRRKLLANSLKNLYPKDKVFQVLEHLGFSEKTRPETISLEEYLKIFRLL 274
>sp|Q74LI0|RSMA_LACJO Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rsmA
PE=3 SV=1
Length = 296
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 147/274 (53%), Gaps = 15/274 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKD 257
Query: 349 L-EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
E EK + D+GL RPEELTL+ FV+L +L+
Sbjct: 258 KDEREKLINDLGLDVRVRPEELTLNQFVQLAHLL 291
>sp|Q8YS62|RSMA_NOSS1 Ribosomal RNA small subunit methyltransferase A OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rsmA PE=3 SV=1
Length = 271
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 152/272 (55%), Gaps = 12/272 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL A +++A+E D+
Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++ S + +K + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL S + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
+ F P PKVD+AVV + +Q + P V K ++V F KRKMLR +LQ +
Sbjct: 179 ASAFHPPPKVDSAVVRLRPRQ-IEIP-VNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+ + L + + +R E+++ +VKL NL+
Sbjct: 237 RLSQLLEQLNINPQARAEDISTQQWVKLANLL 268
>sp|A0LA32|RSMA_MAGSM Ribosomal RNA small subunit methyltransferase A OS=Magnetococcus
sp. (strain MC-1) GN=rsmA PE=3 SV=1
Length = 279
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 141/273 (51%), Gaps = 13/273 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G P K GQ+++++ + ++ A A ++ GD VLEIGPG GSLT LL V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD+ ++ L+R A + L +++ED + ++ + G K+ AN+P+
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEEDAL-------LVDYTALAQQLGGPLKLAANLPY 123
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
NIST ++ LL F + L+ Q+E A RL EP + Y + + ++E + F
Sbjct: 124 NISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEPG--SKAYGALTVQCALWAEIRHGF 181
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
VP F P PKV +AVV ++ + AV + F +V +AF +RK LR +L+ +C
Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRV-AVEDERHFVRVVKAAFAQRRKTLRNTLKTIC 240
Query: 347 TSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
+ + L G+ R E LTL F +L N
Sbjct: 241 P--DPNRWLEQAGIDGALRAEVLTLAQFAQLAN 271
>sp|Q67JB9|RSMA_SYMTH Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=rsmA PE=3 SV=1
Length = 285
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 162/288 (56%), Gaps = 18/288 (6%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+KAL ++ G P+ LGQ+++++ + D + +AA ++ D+VLEIGPG G+LT L
Sbjct: 7 GALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAA 66
Query: 162 AGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+ +E D+ +V ++ + + D ++V+ D + + L R + AK
Sbjct: 67 KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+
Sbjct: 123 VVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYT 181
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
EP +V R +F PQP+VD+AVV+ + ++ P ++FF +V +AF G+R RK
Sbjct: 182 EPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF-GQR---RK 235
Query: 341 SLQHLCTSLEIEK-----ALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
SL + TSL +EK AL G+ R E L+L++F + + Q
Sbjct: 236 SLVNALTSLGVEKAAVHAALEAAGIDPGRRGESLSLEEFAAVARTLWQ 283
>sp|Q181C1|RSMA_CLOD6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
difficile (strain 630) GN=rsmA PE=3 SV=1
Length = 289
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 156/284 (54%), Gaps = 12/284 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQP VD+ V+ ++ Y V + FF V ++F +RK L
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL--CTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
SL L EI + L + + R E L++++F L N+I
Sbjct: 239 NSLGGLGFLNKDEIREILKEANIDEKRRGETLSIEEFSVLSNII 282
>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3
SV=1
Length = 301
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 148/268 (55%), Gaps = 12/268 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL FS +VL++Q+E A R+ + + +Y +++ V +Y E E KVP T F P+
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPR 198
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK--- 353
P+V ++++ K Y V + FF MV + F +RK L+ SL + ++++K
Sbjct: 199 PRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIFQQRRKTLKNSLTK-SSEIKLDKGIV 256
Query: 354 --ALGDVGLPATSRPEELTLDDFVKLHN 379
A+ ++GL R E+LT+ L N
Sbjct: 257 TEAIRELGLDPRIRGEKLTIKQMAILSN 284
>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain P1031) GN=rsmA PE=3 SV=1
Length = 290
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L++F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLAD 283
>sp|Q03T56|RSMA_LACBA Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
brevis (strain ATCC 367 / JCM 1170) GN=rsmA PE=3 SV=1
Length = 296
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 14/284 (4%)
Query: 103 ATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A KA+ ++ R +KSLGQ+++ + I + AA V + D V+EIGPG G+LT +
Sbjct: 12 ARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A E D++++ ++ E +K++ ED +K ++ + + FE + K+
Sbjct: 72 RAHKVVAFEIDENLLPVLDETLMDYKNVKIINEDILKANLPAVVADEFEADRP----LKL 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T ++ +L F +V+++Q E A RLV EP T Y +++ + + +
Sbjct: 128 VANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPG--TKAYGSLSVIMQYRA 185
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
E F VPRT F PQP VD+A++ ++A K+ FS V F +RK L
Sbjct: 186 HVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYED-KALFSFVKGCFAHRRKSLWN 244
Query: 341 SLQHLC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
+LQ + IE L G+ RPE LTL +F++L N
Sbjct: 245 NLQGIFGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTN 288
>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1
Length = 287
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 149/270 (55%), Gaps = 18/270 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I +
Sbjct: 83 PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L + +++Q+E A R+ + T +Y ++I V +YS P+ KVP + F PQ
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQ 196
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKV++ V+ + D P V+ + FFS+V AF +RK L +L L++EK+
Sbjct: 197 PKVESTVIRLDI---LDTPKVSVEREDLFFSLVKDAFGKRRKTLLNALS--TGDLKLEKS 251
Query: 355 LGDVGLPATS-----RPEELTLDDFVKLHN 379
L L A++ R E LT++++ L N
Sbjct: 252 LLREVLAASNIDENRRGETLTIEEYGVLAN 281
>sp|Q8DND3|RSMA_STRR6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1
Length = 290
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|Q04II4|RSMA_STRP2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA
PE=3 SV=1
Length = 290
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|O84358|RSMA_CHLTR Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=rsmA PE=3 SV=1
Length = 277
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 168/293 (57%), Gaps = 19/293 (6%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
+RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ +
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
>sp|B0BBY8|RSMA_CHLTB Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=rsmA
PE=3 SV=1
Length = 277
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 168/293 (57%), Gaps = 19/293 (6%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
+RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ +
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
>sp|Q3KM04|RSMA_CHLTA Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=rsmA PE=3 SV=1
Length = 277
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 168/293 (57%), Gaps = 19/293 (6%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
+RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ +
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
>sp|B0B7S3|RSMA_CHLT2 Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=rsmA PE=3 SV=1
Length = 277
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 168/293 (57%), Gaps = 19/293 (6%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
+RK+L SL++L ++ + L +G +RPE + L++++K+ +L+ +
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKDI 277
>sp|Q9CHN8|RSMA_LACLA Ribosomal RNA small subunit methyltransferase A OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=rsmA PE=3 SV=1
Length = 294
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 143/265 (53%), Gaps = 9/265 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R + S +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADR-IAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIE 352
P VD+A++ ++A V + FF + S+F +RK L +LQ + EIE
Sbjct: 202 APNVDSAILKMVRREAP-LVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIE 260
Query: 353 KALGDVGLPATSRPEELTLDDFVKL 377
K L + T R E L++++F KL
Sbjct: 261 KLLAQAEISPTIRGEALSIEEFAKL 285
>sp|Q3M3F3|RSMA_ANAVT Ribosomal RNA small subunit methyltransferase A OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=rsmA PE=3
SV=1
Length = 271
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 149/272 (54%), Gaps = 12/272 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + D + AA D +LEIGPGTG LT LL +LA+E D+
Sbjct: 4 PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVEALLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++L+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDLVANLLTFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL + + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKA-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKVD+AVV + +Q PA K ++V F KRKMLR +LQ +
Sbjct: 179 AGAFHPPPKVDSAVVRLRPRQ-IQIPA-RDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+ + L + + +R E+++ +V+L NL+
Sbjct: 237 RLSQLLEQLNINPQARAEDISTQQWVELANLL 268
>sp|P59157|RSMA_THEEB Ribosomal RNA small subunit methyltransferase A
OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA
PE=3 SV=1
Length = 265
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 150/274 (54%), Gaps = 21/274 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I Q+ AAA + GD VLEIGPG G+LT LL +GA V+A+E D+ +
Sbjct: 5 RKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
G +R +F S ++ ++++ D ++ + + G KVVANIP+NI+ ++
Sbjct: 65 CGQLRRQFDS-ERFQLIEGDILRLDL------------APLGCNKVVANIPYNITGPLLG 111
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
LL P F ++LL+Q+E RL+ S + Y +++ V F + E VP
Sbjct: 112 HLLGSIARPRRPAFERLILLVQKEIGDRLMA-SPGSKAYGALSVRVQFLATCEKVCAVPP 170
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
F P PKVD+ VV L+ P V S + +++ F +RKML +L+ L +
Sbjct: 171 RAFQPPPKVDSVVVC--LRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQ 228
Query: 351 IEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
+ +AL +G A SR E L+L+D++ L ++ Q+
Sbjct: 229 VRQALLQLGRDANSRAEALSLEDWLALSEVLRQL 262
>sp|B1WRJ7|RSMA_CYAA5 Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp.
(strain ATCC 51142) GN=rsmA PE=3 SV=1
Length = 270
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 149/275 (54%), Gaps = 14/275 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA +++ D +LEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + D +LQ D +K I + ++ KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSLGDEDNFLLLQGDILKLDIATEA----QQFPKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
+LL P + +VLL+Q+E A R++ P + Y ++I + + ++ Y V
Sbjct: 120 DKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPG--SKNYGALSIKMQYLADCNYICDV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P+ +F+P PKVD+AV+TF+ + + + T+ K ++++ F+ +RKMLR +LQ L
Sbjct: 178 PKKSFYPPPKVDSAVITFRPRSLLN--SATNPKYLETLINLGFSSRRKMLRNNLQSLIDR 235
Query: 349 LEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
+ + L ++ L R E L L+ ++ L N Q
Sbjct: 236 DLLTEFLTEIDLNEQVRAENLDLNQWIALSNYFSQ 270
>sp|A1WVT7|RSMA_HALHL Ribosomal RNA small subunit methyltransferase A OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rsmA PE=3 SV=1
Length = 265
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 18/264 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + ++ A A +EG+ +LEIGPG G+LT LL T+ A+E D+
Sbjct: 5 PRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLGTLTAVELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ERFA L+V++ D + + G +VV N+P+N+ST ++
Sbjct: 65 LAPRLQERFAP--ALRVIEGDALALDPAEL--------APAQGRLRVVGNLPYNVSTPIL 114
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D+ ++ LLLQ E R+V P + R +++ V + E F VP FF
Sbjct: 115 FHLLAAADVIEDLHLLLQREVVDRMVAPPGGKTRGR-LSVMVQYRCRVERCFNVPAGAFF 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV ++ V +L PA +++ +V++AF G+RK LR SL+ L T+ E
Sbjct: 174 PAPKVMSSFV--RLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEA 231
Query: 354 ALGDVGLPATSRPEELTLDDFVKL 377
A D G +R E L+++ FV+L
Sbjct: 232 AGVDPG----ARAETLSVEAFVRL 251
>sp|C1CA29|RSMA_STRP7 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain 70585) GN=rsmA PE=3 SV=1
Length = 290
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 147/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|C1CTN9|RSMA_STRZT Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=rsmA PE=3 SV=1
Length = 290
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 146/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|Q97NN5|RSMA_STRPN Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=rsmA PE=3 SV=2
Length = 290
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 146/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|B8ZNY9|RSMA_STRPJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rsmA
PE=3 SV=1
Length = 290
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 146/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|B2IM67|RSMA_STRPS Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain CGSP14) GN=rsmA PE=3 SV=1
Length = 290
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 146/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMTFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|B1I8T7|RSMA_STRPI Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=rsmA PE=3 SV=1
Length = 290
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 147/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|B5E2H6|RSMA_STRP4 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=rsmA PE=3 SV=1
Length = 290
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 147/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|Q5FMG3|RSMA_LACAC Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=rsmA PE=3 SV=1
Length = 294
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 145/270 (53%), Gaps = 15/270 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K+L +D +K ++ + F+ ++ KVVAN+P+
Sbjct: 85 PEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L FS + L++Q+E A RL E EY P+ I V + +V
Sbjct: 141 ITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKIALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-T 347
T+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSSVVV--LTPLQERPKIENRKHFIWVVKMCFSQRRKTLNNNLKALIPN 257
Query: 348 SLEIEKALGDVGLPATSRPEELTLDDFVKL 377
+ E E + +G+ RPE+LT+D F+++
Sbjct: 258 AKEREALISKLGVDPRVRPEDLTIDQFIEI 287
>sp|C1CGR5|RSMA_STRZJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain JJA) GN=rsmA PE=3 SV=1
Length = 290
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 13/286 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPATSRPEELTLDDFVKLHN 379
+L E + KAL GL + R E L+L +F L +
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLAD 283
>sp|Q03HF6|RSMA_PEDPA Ribosomal RNA small subunit methyltransferase A OS=Pediococcus
pentosaceus (strain ATCC 25745 / 183-1w) GN=rsmA PE=3
SV=1
Length = 297
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 147/280 (52%), Gaps = 13/280 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G +KSLGQ+++ + + + AA V D V+E+GPG GSLT + VL
Sbjct: 17 LEKYGLSAKKSLGQNFLTDPNVLLNIVDAAEVSPEDDVIEVGPGIGSLTEQIAKRAHHVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D++++ ++ E + D + V+ +D +K ++ + + + ++ K+VAN+P+
Sbjct: 77 AFEIDRNLMNVLDETLSPYDNITVVNQDVLKANVNEEVENHLDGKRR----LKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++K + ++V+++Q+E A RL +P EY +++ V + + +F
Sbjct: 133 YITTPILKTFMASTLPIDKMVVMMQKEVAERLTAQPG--DKEYGSLSVVVQYRMNTQIEF 190
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V F P+PKVD+A+V+ + + K FF V F +RK + ++Q L
Sbjct: 191 DVSSKVFVPRPKVDSAIVSLTPRAGWEV-MPEDDKDFFKTVHGCFMHRRKNIWNNMQGLY 249
Query: 347 -----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+I+ L D+G+ RPE LT+ DF+KLHN I
Sbjct: 250 GKEPEIKAKIQNVLDDLGIDPQVRPERLTVLDFIKLHNRI 289
>sp|Q8R6B1|RSMA_FUSNN Ribosomal RNA small subunit methyltransferase A OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=rsmA PE=3 SV=1
Length = 264
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 144/264 (54%), Gaps = 14/264 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVERVKKITCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ ED ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMEDVLEVDLRRYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKE 233
Query: 354 ALGDVGLPATSRPEELTLDDFVKL 377
L + + R E +++D F++L
Sbjct: 234 ILNQIEISENERAENISIDKFIEL 257
>sp|B2J0A6|RSMA_NOSP7 Ribosomal RNA small subunit methyltransferase A OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=rsmA PE=3
SV=1
Length = 286
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 152/277 (54%), Gaps = 20/277 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNAGATVLA 168
PRK QH++ + + D + AA E GD +LEIGPGTG LT LL +++A
Sbjct: 4 PRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPLVQSLIA 63
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ + L+ ++ + +LQ DF+ + S++++ +K + KVVANIP+N
Sbjct: 64 VEIDRDLCQLLSKQLGKTENFLLLQGDFLTLDLPSYLVAFPNFQKPN----KVVANIPYN 119
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
I+ +I++LL P + F +VLL+Q+E A RL +P +T + +++ V + +E
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKT--FGALSVRVQYLAEC 177
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E VP + F P PKVD+AVV + ++ + PA+ + + + + F KRKMLR +L
Sbjct: 178 ELICTVPASAFHPAPKVDSAVVRLRPRK-IEIPAL-NPRQLETFLKLGFGAKRKMLRNNL 235
Query: 343 QHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHN 379
Q + + L + + +R E++++ +V L N
Sbjct: 236 QSVIERDRLSHLLEQLKINPQARAEDISVQQWVILAN 272
>sp|A8F909|RSMA_BACP2 Ribosomal RNA small subunit methyltransferase A OS=Bacillus pumilus
(strain SAFR-032) GN=rsmA PE=3 SV=1
Length = 292
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 151/277 (54%), Gaps = 23/277 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V +Y+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSL--------QH 344
PQP VD+AV+ +++ PAV+ + + FF ++ ++F +RK L +L QH
Sbjct: 197 PQPNVDSAVIKLTVRET---PAVSVENDEFFFQLIRASFGQRRKTLMNNLMNNLPDGKQH 253
Query: 345 LCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
IE+AL + R E L++++F +L N++
Sbjct: 254 KAI---IEEALQTADIDGKRRGESLSIEEFARLSNVL 287
>sp|Q04C60|RSMA_LACDB Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=rsmA PE=3 SV=1
Length = 296
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 198
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 199 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 255
Query: 347 TSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
E EK L D+ L RPE+L + DF+++ I ++
Sbjct: 256 PDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAEM 294
>sp|Q1GBR1|RSMA_LACDA Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=rsmA PE=3 SV=1
Length = 296
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 198
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 199 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 255
Query: 347 TSLEI-EKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
E EK L D+ L RPE+L + DF+++ I ++
Sbjct: 256 PDKEDREKLLADLDLDPRQRPEQLAISDFIRISQAIAEM 294
>sp|C3KXY4|RSMA_CLOB6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
botulinum (strain 657 / Type Ba4) GN=rsmA PE=3 SV=1
Length = 275
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 149/271 (54%), Gaps = 15/271 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K F R + K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKID--------FNRLMENKDSIKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + + KV F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCDTKIIRKVSPNCFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L + E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMEN 243
Query: 354 ALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
A G+ + R E L++++F KL + I +
Sbjct: 244 AFERAGIDSKRRGETLSIEEFGKLSDCIYDI 274
>sp|Q1WV73|RSMA_LACS1 Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
salivarius (strain UCC118) GN=rsmA PE=3 SV=1
Length = 296
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 149/275 (54%), Gaps = 13/275 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSL 349
PQP VD+A++ K+ K F +V +F +RK L +LQ L T
Sbjct: 200 PQPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSLYGKDPETKE 258
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384
++ +AL + + R E+LT+ DF+ L + +V++
Sbjct: 259 KMLQALEVADIKQSIRAEKLTVADFINLSDALVKM 293
>sp|Q88Z93|RSMA_LACPL Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
GN=rsmA PE=3 SV=1
Length = 296
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 17/284 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 78 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 134 YITTPILMNILA-GDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 190
Query: 286 FKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 191 MVVPRTVFVPSPNVDSAIVKLTALPLRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 248
Query: 345 LC-----TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
L T I++AL + R E LT+D+F+ L + + Q
Sbjct: 249 LFGKQPETKTAIQQALDIATIDPKIRAERLTVDEFITLTDALHQ 292
>sp|B2A3L9|RSMA_NATTJ Ribosomal RNA small subunit methyltransferase A OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=rsmA PE=3 SV=1
Length = 302
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 150/282 (53%), Gaps = 21/282 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSLGQ+++++ I ++ AAA ++E DIVLEIGPG G+LT + + AIE DQ
Sbjct: 20 PKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRDMSFYVNEIFAIELDQR 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE---------RRKSSSGFAKVVANI 225
M+ +++E S D + ++ D +K + + E ++ + K V+N+
Sbjct: 80 MIDILQETVGSCDNVNIIHNDALKLDYQELISDFIEFSPAQLQCKSKQINPKNLKAVSNL 139
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+ I++ ++ +L S +VL++Q E A R S + Y + + ++ + E E
Sbjct: 140 PYYIASPLVLKLAKEKVPLSVMVLMVQREVADRFT-ASPGSKNYGAVTVLLDCFYEVEGV 198
Query: 286 FKVPRTNFFPQPKVDAAVVTF----KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
F VP+T F+PQP+V++ VV + K DY + F V+ AFN +RK L +
Sbjct: 199 FNVPKTVFYPQPRVESQVVKLTKRSEAKINDDY-----QEDFIKFVNQAFNSRRKTLVNN 253
Query: 342 LQHLCT--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+ + T E+ + L + G A R E+LT+D+F ++ +I
Sbjct: 254 ILSIFTGEKSELSQILENNGFSAGIRGEQLTVDEFAQIFKII 295
>sp|Q837A7|RSMA_ENTFA Ribosomal RNA small subunit methyltransferase A OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=rsmA PE=3 SV=1
Length = 295
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TSL 349
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H T
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHFYGKDEQTVA 257
Query: 350 EIEKALGDVGLPATSRPEELTLDDFVKLHN 379
++++L + + + R E L+L++F +L N
Sbjct: 258 WLKESLAEAEIDPSRRGETLSLEEFARLSN 287
>sp|P72666|RSMA_SYNY3 Ribosomal RNA small subunit methyltransferase A OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmA PE=3 SV=1
Length = 284
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 148/284 (52%), Gaps = 28/284 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEG--------DIVLEIGPGTGSLTNVLLNAGATV 166
PRK GQH++ + + AAA +Q G D +LEIGPG G LT LL G V
Sbjct: 5 PRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATGNPV 64
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D+ + +R++ + +L+ D + + + L + S KVVANIP
Sbjct: 65 VAVELDRDLCLKLRKKLGQRENFLLLEGDVLILDLNA----LLQDFPQFSPLNKVVANIP 120
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+NI++ +++ LL P F +VLL+Q+E A RL +PS T Y +++ + + +
Sbjct: 121 YNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPS--TKAYGALSVRMQYLA 178
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA---VTSTKSFFSMVSSAFNGKRKM 337
++ VP F P PKVD+AV+ T YP + ++ F +RKM
Sbjct: 179 RVDWIVDVPPKAFTPPPKVDSAVIRL-----TPYPVEQLPGDRRLLDQLLCLGFANRRKM 233
Query: 338 LRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
LR +L+ L ++ L + LP+T+R E+L+L+ +++L NL+
Sbjct: 234 LRNNLKGLIAPEQLTTLLEQLALPSTARAEDLSLEQWLELTNLL 277
>sp|Q3K5T2|RSMA_PSEPF Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1
Length = 272
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 14/262 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + GD +LEIGPG G+LT +LN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA- 238
Query: 356 GDVGLPATSRPEELTLDDFVKL 377
G+ + RPE+L L FV+L
Sbjct: 239 ---GVDGSLRPEQLDLAAFVRL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,794,376
Number of Sequences: 539616
Number of extensions: 5188553
Number of successful extensions: 17122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 14292
Number of HSP's gapped (non-prelim): 826
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)