Query 016715
Match_columns 384
No_of_seqs 446 out of 3628
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0030 KsgA Dimethyladenosine 100.0 1E-57 2.2E-62 423.0 26.3 254 114-383 3-256 (259)
2 PTZ00338 dimethyladenosine tra 100.0 1.8E-52 3.9E-57 400.2 25.9 255 110-383 5-288 (294)
3 PRK00274 ksgA 16S ribosomal RN 100.0 1.7E-51 3.7E-56 391.3 28.4 266 103-383 4-270 (272)
4 TIGR00755 ksgA dimethyladenosi 100.0 2.9E-49 6.3E-54 372.4 26.2 253 113-381 1-253 (253)
5 PF00398 RrnaAD: Ribosomal RNA 100.0 1.6E-48 3.4E-53 369.1 20.4 259 114-383 3-262 (262)
6 PRK14896 ksgA 16S ribosomal RN 100.0 2.9E-47 6.2E-52 359.7 26.7 251 114-383 2-256 (258)
7 KOG0820 Ribosomal RNA adenine 100.0 1.2E-43 2.6E-48 323.4 20.0 257 109-384 26-310 (315)
8 KOG0821 Predicted ribosomal RN 100.0 1.5E-34 3.3E-39 256.2 16.1 272 108-382 17-303 (326)
9 smart00650 rADc Ribosomal RNA 100.0 2.2E-34 4.8E-39 255.1 16.9 168 130-310 2-169 (169)
10 COG2518 Pcm Protein-L-isoaspar 99.7 4.3E-17 9.3E-22 146.6 14.4 143 89-244 4-166 (209)
11 PF01135 PCMT: Protein-L-isoas 99.7 4.2E-16 9.1E-21 142.3 13.4 145 87-244 2-169 (209)
12 PRK13942 protein-L-isoaspartat 99.6 4.5E-15 9.8E-20 136.2 15.9 146 86-244 5-173 (212)
13 TIGR00080 pimt protein-L-isoas 99.6 7.1E-15 1.5E-19 135.2 15.8 148 85-244 5-174 (215)
14 PRK13944 protein-L-isoaspartat 99.6 2.1E-14 4.6E-19 131.1 15.7 145 87-244 2-170 (205)
15 COG2263 Predicted RNA methylas 99.6 2E-13 4.3E-18 120.2 16.4 160 113-299 15-184 (198)
16 PRK00312 pcm protein-L-isoaspa 99.6 1.5E-13 3.2E-18 126.1 16.1 150 82-244 4-172 (212)
17 PHA03412 putative methyltransf 99.4 1.5E-12 3.3E-17 119.7 11.1 104 108-230 19-127 (241)
18 PRK13943 protein-L-isoaspartat 99.3 1.8E-11 3.9E-16 118.8 15.2 145 87-244 7-177 (322)
19 PF12847 Methyltransf_18: Meth 99.3 5.6E-12 1.2E-16 103.1 9.9 73 141-225 1-78 (112)
20 COG2226 UbiE Methylase involve 99.3 7.5E-12 1.6E-16 115.9 10.2 100 126-237 36-139 (238)
21 COG4123 Predicted O-methyltran 99.3 8.5E-12 1.8E-16 115.7 8.4 87 135-231 38-129 (248)
22 PLN02244 tocopherol O-methyltr 99.3 2.8E-11 6.1E-16 118.9 12.0 106 127-244 99-220 (340)
23 PRK10909 rsmD 16S rRNA m(2)G96 99.3 4.1E-11 8.9E-16 108.7 12.1 117 125-252 36-158 (199)
24 PTZ00098 phosphoethanolamine N 99.3 4E-11 8.7E-16 113.7 11.5 119 114-244 23-153 (263)
25 PF01209 Ubie_methyltran: ubiE 99.3 1.2E-11 2.6E-16 115.1 7.5 105 127-243 33-149 (233)
26 PF05175 MTS: Methyltransferas 99.3 3E-11 6.5E-16 107.1 9.8 88 131-231 21-112 (170)
27 PHA03411 putative methyltransf 99.2 3E-11 6.6E-16 113.6 10.1 94 118-230 44-139 (279)
28 TIGR00537 hemK_rel_arch HemK-r 99.2 8E-11 1.7E-15 105.1 12.3 82 133-228 11-93 (179)
29 PRK14967 putative methyltransf 99.2 4.7E-11 1E-15 110.4 10.9 92 126-230 21-114 (223)
30 PRK10258 biotin biosynthesis p 99.2 4E-11 8.7E-16 112.7 10.0 90 126-230 27-116 (251)
31 TIGR01177 conserved hypothetic 99.2 7.2E-11 1.6E-15 115.5 11.3 96 123-230 164-261 (329)
32 COG2264 PrmA Ribosomal protein 99.2 7.5E-11 1.6E-15 112.2 10.9 127 114-254 136-270 (300)
33 PF13659 Methyltransf_26: Meth 99.2 2.7E-11 5.8E-16 99.9 6.8 79 142-230 1-83 (117)
34 TIGR02752 MenG_heptapren 2-hep 99.2 1.4E-10 3.1E-15 107.4 12.0 92 126-229 30-126 (231)
35 TIGR00477 tehB tellurite resis 99.2 8.5E-11 1.9E-15 106.5 10.2 87 130-229 19-106 (195)
36 COG2242 CobL Precorrin-6B meth 99.2 2E-10 4.3E-15 101.6 11.8 122 124-260 17-145 (187)
37 PRK15001 SAM-dependent 23S rib 99.2 9.6E-11 2.1E-15 115.9 10.9 87 130-229 217-310 (378)
38 PRK11207 tellurite resistance 99.2 1.4E-10 3E-15 105.3 11.0 84 132-228 21-106 (197)
39 PRK14966 unknown domain/N5-glu 99.2 2.6E-10 5.7E-15 113.3 13.7 79 140-229 250-331 (423)
40 PLN02233 ubiquinone biosynthes 99.2 1.6E-10 3.5E-15 109.4 11.6 88 129-228 61-156 (261)
41 COG3963 Phospholipid N-methylt 99.2 1.2E-10 2.5E-15 100.4 9.2 101 115-227 22-127 (194)
42 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.8E-10 4E-15 117.1 11.5 105 127-239 283-389 (443)
43 PRK14103 trans-aconitate 2-met 99.2 8.7E-11 1.9E-15 110.8 8.4 97 129-243 17-122 (255)
44 COG4106 Tam Trans-aconitate me 99.2 6.6E-11 1.4E-15 106.0 6.9 102 130-247 19-129 (257)
45 PRK03522 rumB 23S rRNA methylu 99.1 2E-10 4.4E-15 111.7 10.4 107 123-240 151-264 (315)
46 PRK08287 cobalt-precorrin-6Y C 99.1 9.4E-10 2E-14 98.8 13.5 109 123-245 13-129 (187)
47 PF13847 Methyltransf_31: Meth 99.1 2.3E-10 5E-15 99.2 9.2 80 140-230 2-86 (152)
48 TIGR02469 CbiT precorrin-6Y C5 99.1 8.2E-10 1.8E-14 91.5 12.1 107 126-243 4-118 (124)
49 PF08241 Methyltransf_11: Meth 99.1 2.3E-10 5.1E-15 89.9 8.0 72 146-230 1-73 (95)
50 PRK00107 gidB 16S rRNA methylt 99.1 3E-10 6.6E-15 102.1 9.7 90 141-243 45-141 (187)
51 PF06325 PrmA: Ribosomal prote 99.1 1.6E-10 3.4E-15 110.8 7.8 128 114-258 135-270 (295)
52 PRK01683 trans-aconitate 2-met 99.1 4.1E-10 9E-15 106.2 10.1 86 129-230 19-106 (258)
53 COG2230 Cfa Cyclopropane fatty 99.1 4.2E-10 9.1E-15 106.2 9.7 82 128-224 59-144 (283)
54 PRK14968 putative methyltransf 99.1 1.3E-09 2.8E-14 97.3 12.5 87 130-229 12-102 (188)
55 COG2227 UbiG 2-polyprenyl-3-me 99.1 2.9E-10 6.2E-15 104.1 8.1 109 104-224 19-131 (243)
56 PRK09489 rsmC 16S ribosomal RN 99.1 6.9E-10 1.5E-14 108.9 11.4 85 131-229 186-273 (342)
57 TIGR00138 gidB 16S rRNA methyl 99.1 6.1E-10 1.3E-14 99.7 10.0 72 141-225 42-117 (181)
58 COG2813 RsmC 16S RNA G1207 met 99.1 5E-10 1.1E-14 106.1 9.8 90 130-233 147-240 (300)
59 PF02353 CMAS: Mycolic acid cy 99.1 8E-10 1.7E-14 105.2 11.3 110 127-251 48-170 (273)
60 COG2890 HemK Methylase of poly 99.1 4.7E-10 1E-14 107.2 9.8 74 144-231 113-190 (280)
61 PRK11036 putative S-adenosyl-L 99.1 5.2E-10 1.1E-14 105.5 10.0 102 130-243 34-145 (255)
62 TIGR03533 L3_gln_methyl protei 99.1 8.2E-10 1.8E-14 105.9 10.7 80 137-229 117-201 (284)
63 PLN02396 hexaprenyldihydroxybe 99.1 9.1E-10 2E-14 107.1 11.1 93 140-244 130-232 (322)
64 PRK11088 rrmA 23S rRNA methylt 99.1 1.1E-09 2.3E-14 104.5 11.3 90 140-244 84-178 (272)
65 TIGR03704 PrmC_rel_meth putati 99.1 1E-09 2.2E-14 103.3 11.0 92 128-230 72-166 (251)
66 KOG3420 Predicted RNA methylas 99.1 2.8E-10 6E-15 95.8 6.0 103 114-229 18-126 (185)
67 COG0742 N6-adenine-specific me 99.1 8.7E-10 1.9E-14 97.9 9.5 112 99-228 8-125 (187)
68 TIGR00095 RNA methyltransferas 99.0 1.6E-09 3.5E-14 97.6 11.3 109 123-239 30-145 (189)
69 PF13649 Methyltransf_25: Meth 99.0 8.3E-10 1.8E-14 89.0 8.1 81 145-237 1-89 (101)
70 PLN02336 phosphoethanolamine N 99.0 1.3E-09 2.9E-14 111.8 11.6 113 119-243 242-365 (475)
71 TIGR03534 RF_mod_PrmC protein- 99.0 1.4E-09 3E-14 101.8 10.8 91 127-231 74-168 (251)
72 PRK09328 N5-glutamine S-adenos 99.0 2.2E-09 4.7E-14 102.0 12.1 90 127-229 94-187 (275)
73 PF03602 Cons_hypoth95: Conser 99.0 1.6E-09 3.6E-14 97.0 10.6 121 125-253 24-153 (183)
74 TIGR00536 hemK_fam HemK family 99.0 1.3E-09 2.8E-14 104.5 10.5 92 127-231 99-196 (284)
75 TIGR02085 meth_trns_rumB 23S r 99.0 1.3E-09 2.8E-14 108.5 10.5 106 123-239 211-323 (374)
76 PRK00377 cbiT cobalt-precorrin 99.0 2.4E-09 5.2E-14 97.2 11.3 110 124-244 23-142 (198)
77 TIGR02021 BchM-ChlM magnesium 99.0 1.9E-09 4.2E-14 99.2 10.8 82 128-224 40-126 (219)
78 PRK07402 precorrin-6B methylas 99.0 2.6E-09 5.7E-14 96.7 11.3 112 124-246 23-141 (196)
79 PRK15451 tRNA cmo(5)U34 methyl 99.0 2E-09 4.4E-14 101.0 10.6 76 140-229 55-137 (247)
80 PRK05785 hypothetical protein; 99.0 9.2E-10 2E-14 102.1 8.1 71 141-229 51-122 (226)
81 TIGR00406 prmA ribosomal prote 99.0 3.4E-09 7.5E-14 101.8 11.9 117 114-245 133-257 (288)
82 PF07021 MetW: Methionine bios 99.0 3.9E-10 8.4E-15 100.3 4.9 78 131-225 5-83 (193)
83 PRK00121 trmB tRNA (guanine-N( 99.0 1.9E-09 4.1E-14 98.2 9.5 77 141-227 40-121 (202)
84 PF01170 UPF0020: Putative RNA 99.0 1.7E-09 3.7E-14 96.7 9.0 96 123-230 10-119 (179)
85 PRK12335 tellurite resistance 99.0 2E-09 4.3E-14 103.4 10.0 75 140-227 119-194 (287)
86 KOG1270 Methyltransferases [Co 99.0 1.5E-09 3.2E-14 100.3 8.6 113 142-271 90-226 (282)
87 TIGR03587 Pse_Me-ase pseudamin 99.0 2.7E-09 5.9E-14 97.4 10.2 75 140-230 42-119 (204)
88 PRK11805 N5-glutamine S-adenos 99.0 2.6E-09 5.7E-14 103.4 10.3 75 143-230 135-214 (307)
89 TIGR00452 methyltransferase, p 99.0 7.6E-09 1.7E-13 100.2 13.4 118 114-245 90-223 (314)
90 PRK04266 fibrillarin; Provisio 99.0 3.9E-09 8.4E-14 97.8 10.8 100 135-243 66-172 (226)
91 TIGR00479 rumA 23S rRNA (uraci 99.0 2.8E-09 6E-14 108.1 10.3 104 128-239 279-385 (431)
92 PLN02336 phosphoethanolamine N 98.9 2.5E-09 5.4E-14 109.8 9.5 93 127-229 23-115 (475)
93 PRK01544 bifunctional N5-gluta 98.9 4.1E-09 8.9E-14 108.7 10.4 76 142-230 139-219 (506)
94 PRK15068 tRNA mo(5)U34 methylt 98.9 6.5E-09 1.4E-13 101.4 10.8 101 131-244 112-223 (322)
95 PRK08317 hypothetical protein; 98.9 1E-08 2.2E-13 94.6 11.5 104 128-243 6-120 (241)
96 TIGR00091 tRNA (guanine-N(7)-) 98.9 3.8E-09 8.2E-14 95.6 8.2 78 141-227 16-97 (194)
97 TIGR00740 methyltransferase, p 98.9 6.2E-09 1.3E-13 97.2 9.9 75 140-228 52-133 (239)
98 PRK11705 cyclopropane fatty ac 98.9 1.1E-08 2.4E-13 102.0 12.2 84 128-227 154-238 (383)
99 PRK11727 23S rRNA mA1618 methy 98.9 7.3E-09 1.6E-13 100.4 10.5 85 141-233 114-205 (321)
100 PRK15128 23S rRNA m(5)C1962 me 98.9 9.4E-09 2E-13 102.8 11.4 98 123-230 204-306 (396)
101 PRK10901 16S rRNA methyltransf 98.9 6.9E-09 1.5E-13 105.1 10.6 94 125-228 228-324 (427)
102 PRK11873 arsM arsenite S-adeno 98.9 6.7E-09 1.4E-13 98.8 9.7 95 137-243 73-179 (272)
103 PLN02490 MPBQ/MSBQ methyltrans 98.9 8E-09 1.7E-13 101.0 10.2 104 127-243 98-211 (340)
104 PRK04148 hypothetical protein; 98.9 1.4E-08 3.1E-13 85.7 10.3 93 128-236 3-97 (134)
105 TIGR02072 BioC biotin biosynth 98.9 5.4E-09 1.2E-13 96.6 8.6 89 128-230 18-111 (240)
106 PLN02585 magnesium protoporphy 98.9 8.7E-09 1.9E-13 99.9 10.2 85 127-226 127-221 (315)
107 COG2265 TrmA SAM-dependent met 98.9 6.2E-09 1.3E-13 104.8 9.4 107 127-242 279-388 (432)
108 PF05401 NodS: Nodulation prot 98.9 7.9E-09 1.7E-13 92.2 8.9 82 136-230 38-120 (201)
109 PRK00517 prmA ribosomal protei 98.9 1.7E-08 3.7E-13 95.0 11.5 90 140-246 118-212 (250)
110 PRK07580 Mg-protoporphyrin IX 98.9 1.8E-08 3.9E-13 93.0 11.3 85 128-227 47-137 (230)
111 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1E-08 2.3E-13 97.2 9.7 85 132-228 62-151 (264)
112 PRK06922 hypothetical protein; 98.9 1.1E-08 2.4E-13 106.4 10.3 78 139-228 416-498 (677)
113 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.5E-08 3.1E-13 100.3 10.7 88 132-229 113-204 (390)
114 PLN03075 nicotianamine synthas 98.8 3.7E-08 8.1E-13 94.1 12.8 90 123-224 105-202 (296)
115 COG1041 Predicted DNA modifica 98.8 9.6E-09 2.1E-13 99.1 8.4 97 123-231 179-278 (347)
116 PF08704 GCD14: tRNA methyltra 98.8 2.1E-08 4.6E-13 93.7 10.5 111 125-244 24-143 (247)
117 TIGR02143 trmA_only tRNA (urac 98.8 2.1E-08 4.6E-13 99.0 10.7 112 127-239 184-302 (353)
118 PF02384 N6_Mtase: N-6 DNA Met 98.8 2.1E-08 4.5E-13 97.3 10.5 106 114-230 20-138 (311)
119 PLN02672 methionine S-methyltr 98.8 1.3E-08 2.9E-13 111.7 10.1 95 124-229 96-215 (1082)
120 PRK00216 ubiE ubiquinone/menaq 98.8 2.9E-08 6.3E-13 91.8 10.8 88 126-225 36-129 (239)
121 PF03848 TehB: Tellurite resis 98.8 2.7E-08 5.8E-13 89.5 10.1 79 133-224 22-101 (192)
122 PRK06202 hypothetical protein; 98.8 1.8E-08 3.8E-13 93.7 9.3 78 140-230 59-142 (232)
123 PRK05031 tRNA (uracil-5-)-meth 98.8 2.4E-08 5.3E-13 98.9 10.6 109 125-239 187-311 (362)
124 COG2519 GCD14 tRNA(1-methylade 98.8 1.9E-08 4.2E-13 92.8 8.8 163 127-310 80-252 (256)
125 TIGR02987 met_A_Alw26 type II 98.8 1.5E-08 3.4E-13 105.2 9.1 105 117-229 1-124 (524)
126 PRK14902 16S rRNA methyltransf 98.8 3.3E-08 7.2E-13 100.6 10.9 92 126-228 235-331 (444)
127 KOG1540 Ubiquinone biosynthesi 98.8 5E-08 1.1E-12 89.7 10.6 126 73-223 44-183 (296)
128 PRK14903 16S rRNA methyltransf 98.8 2.7E-08 5.8E-13 100.8 9.7 93 124-227 220-317 (431)
129 PRK14901 16S rRNA methyltransf 98.8 3E-08 6.4E-13 100.7 9.8 97 123-227 234-335 (434)
130 PRK14904 16S rRNA methyltransf 98.8 3.2E-08 6.9E-13 100.8 9.9 86 129-227 238-328 (445)
131 PRK13255 thiopurine S-methyltr 98.7 9.8E-08 2.1E-12 88.0 11.9 69 133-201 29-111 (218)
132 PRK11188 rrmJ 23S rRNA methylt 98.7 5.8E-08 1.2E-12 89.0 10.3 79 134-225 43-125 (209)
133 TIGR03840 TMPT_Se_Te thiopurin 98.7 1.2E-07 2.6E-12 87.1 12.3 70 132-201 25-108 (213)
134 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 5E-08 1.1E-12 89.3 9.7 89 127-227 25-116 (223)
135 TIGR02081 metW methionine bios 98.7 3.5E-08 7.7E-13 89.1 8.6 81 131-230 5-88 (194)
136 KOG2904 Predicted methyltransf 98.7 5.6E-08 1.2E-12 90.2 9.3 105 127-239 131-243 (328)
137 PLN02781 Probable caffeoyl-CoA 98.7 5.8E-08 1.3E-12 90.5 9.6 96 124-225 51-152 (234)
138 KOG1661 Protein-L-isoaspartate 98.7 1.2E-07 2.7E-12 84.8 11.0 114 119-244 57-190 (237)
139 PRK05134 bifunctional 3-demeth 98.7 1.2E-07 2.6E-12 88.0 11.1 91 125-226 32-123 (233)
140 PRK11783 rlmL 23S rRNA m(2)G24 98.7 6.1E-08 1.3E-12 103.9 9.4 95 123-230 522-621 (702)
141 TIGR01983 UbiG ubiquinone bios 98.7 1.3E-07 2.7E-12 87.1 10.2 100 115-225 15-120 (224)
142 PF05958 tRNA_U5-meth_tr: tRNA 98.7 5.2E-08 1.1E-12 96.2 7.8 111 127-238 183-300 (352)
143 TIGR00563 rsmB ribosomal RNA s 98.6 1.1E-07 2.5E-12 96.2 10.1 96 123-228 220-320 (426)
144 PRK00811 spermidine synthase; 98.6 1.4E-07 3E-12 90.4 10.1 74 141-225 76-158 (283)
145 PF13489 Methyltransf_23: Meth 98.6 2.4E-07 5.2E-12 80.1 9.7 79 131-229 11-90 (161)
146 PTZ00146 fibrillarin; Provisio 98.6 2.3E-07 4.9E-12 88.5 9.6 90 128-227 116-212 (293)
147 smart00828 PKS_MT Methyltransf 98.6 1.7E-07 3.6E-12 86.4 8.6 88 143-243 1-100 (224)
148 PRK00050 16S rRNA m(4)C1402 me 98.6 2.6E-07 5.6E-12 88.6 9.5 93 126-226 4-99 (296)
149 KOG1271 Methyltransferases [Ge 98.6 2.4E-07 5.2E-12 81.2 8.4 101 100-202 24-133 (227)
150 KOG1541 Predicted protein carb 98.6 1.6E-07 3.4E-12 84.7 7.2 84 125-223 32-118 (270)
151 KOG3191 Predicted N6-DNA-methy 98.5 3.5E-07 7.6E-12 80.2 8.5 78 141-231 43-124 (209)
152 PRK04457 spermidine synthase; 98.5 5.8E-07 1.2E-11 85.2 10.7 86 129-225 53-144 (262)
153 TIGR00438 rrmJ cell division p 98.5 3.1E-07 6.7E-12 82.5 8.2 75 138-225 29-106 (188)
154 COG0116 Predicted N6-adenine-s 98.5 3.8E-07 8.2E-12 89.4 9.2 94 123-228 173-310 (381)
155 PRK11783 rlmL 23S rRNA m(2)G24 98.5 4.1E-07 9E-12 97.6 10.2 95 124-228 172-314 (702)
156 PF02475 Met_10: Met-10+ like- 98.5 2.8E-07 6E-12 83.6 7.5 78 139-229 99-181 (200)
157 PF09445 Methyltransf_15: RNA 98.5 2.5E-07 5.3E-12 81.0 6.9 79 143-230 1-82 (163)
158 PRK01581 speE spermidine synth 98.5 8.1E-07 1.8E-11 87.0 11.1 92 125-227 131-236 (374)
159 PLN02366 spermidine synthase 98.5 6.8E-07 1.5E-11 86.5 10.5 91 127-227 74-175 (308)
160 PF08242 Methyltransf_12: Meth 98.5 1.3E-08 2.7E-13 81.5 -1.6 76 146-231 1-80 (99)
161 KOG1500 Protein arginine N-met 98.5 3.6E-07 7.8E-12 87.0 7.9 82 130-225 166-251 (517)
162 PLN02476 O-methyltransferase 98.5 7.4E-07 1.6E-11 84.7 10.1 98 124-227 101-204 (278)
163 TIGR03438 probable methyltrans 98.5 1.1E-06 2.4E-11 85.0 11.4 67 131-199 55-127 (301)
164 smart00138 MeTrc Methyltransfe 98.5 4.6E-07 9.9E-12 86.0 8.4 73 140-224 98-210 (264)
165 cd02440 AdoMet_MTases S-adenos 98.5 8.3E-07 1.8E-11 69.4 8.2 75 144-229 1-78 (107)
166 PF08003 Methyltransf_9: Prote 98.5 1.3E-06 2.9E-11 83.0 10.8 106 130-248 104-220 (315)
167 COG2521 Predicted archaeal met 98.4 2.3E-07 5E-12 84.3 5.3 115 136-260 129-266 (287)
168 TIGR02716 C20_methyl_CrtF C-20 98.4 1.7E-06 3.7E-11 83.7 11.2 73 128-201 136-213 (306)
169 TIGR00478 tly hemolysin TlyA f 98.4 1.2E-06 2.6E-11 81.1 9.4 98 130-239 63-164 (228)
170 PRK03612 spermidine synthase; 98.4 7.5E-07 1.6E-11 92.4 8.9 78 140-228 296-384 (521)
171 PF01596 Methyltransf_3: O-met 98.4 1.1E-06 2.4E-11 80.2 7.9 81 140-226 44-130 (205)
172 TIGR00417 speE spermidine synt 98.4 2.3E-06 4.9E-11 81.5 10.4 76 141-227 72-155 (270)
173 KOG4300 Predicted methyltransf 98.4 9.6E-07 2.1E-11 79.0 7.0 74 142-227 77-155 (252)
174 KOG1499 Protein arginine N-met 98.4 1.2E-06 2.5E-11 84.5 8.1 72 140-224 59-134 (346)
175 PRK13256 thiopurine S-methyltr 98.4 3.7E-06 8.1E-11 77.7 11.2 76 125-201 28-117 (226)
176 PRK10742 putative methyltransf 98.4 1.7E-06 3.7E-11 80.4 8.9 88 131-229 76-176 (250)
177 COG4122 Predicted O-methyltran 98.4 2.7E-06 5.9E-11 77.9 10.1 88 127-224 45-139 (219)
178 PRK04338 N(2),N(2)-dimethylgua 98.4 2.4E-06 5.3E-11 85.1 10.5 102 122-236 37-143 (382)
179 COG2520 Predicted methyltransf 98.3 3.1E-06 6.7E-11 82.4 9.4 97 131-241 180-283 (341)
180 PF05724 TPMT: Thiopurine S-me 98.3 2.8E-06 6E-11 78.3 8.7 85 126-222 23-121 (218)
181 KOG2187 tRNA uracil-5-methyltr 98.3 4.6E-06 1E-10 83.9 9.8 108 127-241 369-480 (534)
182 COG4076 Predicted RNA methylas 98.2 2.7E-06 5.9E-11 75.0 5.5 61 142-202 33-95 (252)
183 PF05185 PRMT5: PRMT5 arginine 98.2 9.5E-06 2.1E-10 82.4 10.2 70 142-224 187-265 (448)
184 PLN02589 caffeoyl-CoA O-methyl 98.2 9.4E-06 2E-10 76.1 9.2 96 125-225 63-164 (247)
185 PF02390 Methyltransf_4: Putat 98.2 1E-05 2.2E-10 73.4 9.1 76 142-226 18-97 (195)
186 PF08123 DOT1: Histone methyla 98.1 9.1E-06 2E-10 74.1 8.0 98 118-227 22-133 (205)
187 COG1092 Predicted SAM-dependen 98.1 9.5E-06 2.1E-10 80.6 8.3 95 123-227 201-300 (393)
188 COG0220 Predicted S-adenosylme 98.1 1.2E-05 2.6E-10 74.4 8.1 76 143-227 50-129 (227)
189 COG4976 Predicted methyltransf 98.1 3.1E-06 6.8E-11 76.9 3.5 86 126-224 110-195 (287)
190 PF05219 DREV: DREV methyltran 98.0 2.9E-05 6.4E-10 72.3 9.5 110 118-246 66-187 (265)
191 PF05971 Methyltransf_10: Prot 98.0 3E-05 6.5E-10 74.3 9.5 99 128-233 84-193 (299)
192 KOG2915 tRNA(1-methyladenosine 98.0 3.8E-05 8.3E-10 71.6 9.4 103 130-242 94-204 (314)
193 PRK11760 putative 23S rRNA C24 98.0 5.5E-05 1.2E-09 73.4 10.4 83 140-239 210-295 (357)
194 PF10672 Methyltrans_SAM: S-ad 97.9 3.3E-05 7.1E-10 73.9 8.3 93 123-227 108-205 (286)
195 PLN02823 spermine synthase 97.9 4.7E-05 1E-09 74.6 9.2 74 141-225 103-184 (336)
196 PF10294 Methyltransf_16: Puta 97.9 4.4E-05 9.6E-10 67.8 8.2 80 139-227 43-130 (173)
197 TIGR00006 S-adenosyl-methyltra 97.9 8E-05 1.7E-09 71.7 10.1 98 122-226 1-101 (305)
198 TIGR00308 TRM1 tRNA(guanine-26 97.9 7.1E-05 1.5E-09 74.4 9.8 81 143-235 46-131 (374)
199 PRK01544 bifunctional N5-gluta 97.9 3E-05 6.5E-10 80.3 7.3 77 141-227 347-427 (506)
200 KOG2730 Methylase [General fun 97.8 3.7E-05 8E-10 69.6 5.7 107 120-234 72-182 (263)
201 PF13679 Methyltransf_32: Meth 97.7 0.00011 2.4E-09 62.9 7.9 59 140-198 24-93 (141)
202 PRK11933 yebU rRNA (cytosine-C 97.7 0.00011 2.5E-09 75.0 8.8 90 126-226 96-192 (470)
203 KOG2671 Putative RNA methylase 97.7 3.9E-05 8.5E-10 73.6 4.8 115 108-234 176-301 (421)
204 KOG3010 Methyltransferase [Gen 97.7 6.2E-05 1.3E-09 69.2 5.8 75 144-230 36-113 (261)
205 TIGR01444 fkbM_fam methyltrans 97.6 0.00011 2.5E-09 62.4 6.4 55 144-198 1-59 (143)
206 COG0286 HsdM Type I restrictio 97.6 0.00034 7.5E-09 72.1 10.0 106 115-228 161-275 (489)
207 COG1189 Predicted rRNA methyla 97.5 0.00041 8.9E-09 63.9 8.3 89 130-231 67-158 (245)
208 KOG2940 Predicted methyltransf 97.5 0.00015 3.2E-09 66.1 4.8 93 141-245 72-172 (325)
209 COG0421 SpeE Spermidine syntha 97.5 0.0006 1.3E-08 65.2 9.1 85 129-225 61-157 (282)
210 KOG2899 Predicted methyltransf 97.4 0.00023 4.9E-09 65.5 5.3 45 141-185 58-104 (288)
211 PF01564 Spermine_synth: Sperm 97.4 0.00076 1.6E-08 63.4 8.8 76 141-227 76-160 (246)
212 COG3897 Predicted methyltransf 97.4 0.00063 1.4E-08 60.8 7.6 88 128-230 66-156 (218)
213 PF01728 FtsJ: FtsJ-like methy 97.3 0.00029 6.3E-09 62.7 5.1 75 141-226 23-100 (181)
214 PF00891 Methyltransf_2: O-met 97.3 0.0015 3.2E-08 60.9 9.7 88 131-238 90-180 (241)
215 PRK00536 speE spermidine synth 97.3 0.0022 4.7E-08 60.7 10.8 103 127-244 55-168 (262)
216 KOG2361 Predicted methyltransf 97.3 0.00053 1.1E-08 63.1 6.0 78 121-198 48-133 (264)
217 PF01861 DUF43: Protein of unk 97.1 0.0053 1.1E-07 56.9 10.6 107 114-230 15-125 (243)
218 PRK11524 putative methyltransf 97.1 0.0019 4.2E-08 61.9 8.0 59 125-184 193-251 (284)
219 PF04816 DUF633: Family of unk 97.1 0.0038 8.2E-08 57.0 9.4 55 145-199 1-60 (205)
220 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0022 4.7E-08 58.4 7.3 58 123-181 174-231 (231)
221 COG0144 Sun tRNA and rRNA cyto 97.0 0.0046 9.9E-08 61.3 9.7 96 123-227 138-239 (355)
222 cd00315 Cyt_C5_DNA_methylase C 96.8 0.0033 7.3E-08 60.0 7.4 74 144-231 2-76 (275)
223 PF04445 SAM_MT: Putative SAM- 96.8 0.0038 8.2E-08 57.9 7.3 85 132-227 64-161 (234)
224 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0052 1.1E-07 59.0 8.4 91 127-227 71-166 (283)
225 PF01795 Methyltransf_5: MraW 96.8 0.0031 6.7E-08 60.9 6.6 94 125-225 4-101 (310)
226 PF03291 Pox_MCEL: mRNA cappin 96.8 0.0035 7.7E-08 61.4 7.2 80 141-226 62-154 (331)
227 COG0275 Predicted S-adenosylme 96.7 0.012 2.6E-07 56.2 9.8 79 123-201 5-87 (314)
228 PRK13699 putative methylase; P 96.7 0.0065 1.4E-07 56.4 8.0 60 124-184 147-206 (227)
229 PLN02232 ubiquinone biosynthes 96.6 0.003 6.5E-08 55.2 4.9 49 167-227 1-54 (160)
230 KOG1663 O-methyltransferase [S 96.6 0.012 2.6E-07 54.0 8.7 96 123-224 55-156 (237)
231 PF02527 GidB: rRNA small subu 96.6 0.013 2.8E-07 52.5 8.9 68 144-224 51-122 (184)
232 TIGR03439 methyl_EasF probable 96.5 0.013 2.7E-07 57.2 9.1 67 131-199 68-144 (319)
233 KOG3987 Uncharacterized conser 96.5 0.0018 3.8E-08 58.4 2.7 74 109-182 77-153 (288)
234 PHA01634 hypothetical protein 96.4 0.0063 1.4E-07 50.7 5.3 45 141-185 28-73 (156)
235 COG0357 GidB Predicted S-adeno 96.4 0.012 2.6E-07 54.0 7.6 87 142-241 68-161 (215)
236 PF06080 DUF938: Protein of un 96.4 0.011 2.4E-07 53.6 7.1 80 141-224 25-109 (204)
237 PF09243 Rsm22: Mitochondrial 96.3 0.018 4E-07 54.9 8.5 46 141-186 33-81 (274)
238 COG0293 FtsJ 23S rRNA methylas 96.2 0.016 3.5E-07 52.6 7.2 76 140-228 44-122 (205)
239 KOG1975 mRNA cap methyltransfe 96.1 0.014 3.1E-07 56.0 6.8 99 140-244 116-234 (389)
240 COG3129 Predicted SAM-dependen 96.1 0.018 4E-07 52.8 6.9 101 128-235 59-171 (292)
241 COG4262 Predicted spermidine s 96.0 0.021 4.6E-07 55.7 7.5 77 140-227 288-375 (508)
242 PF00145 DNA_methylase: C-5 cy 96.0 0.019 4E-07 55.5 7.4 68 144-226 2-70 (335)
243 PF01269 Fibrillarin: Fibrilla 96.0 0.038 8.2E-07 50.7 8.7 91 128-227 57-153 (229)
244 PF03059 NAS: Nicotianamine sy 95.9 0.19 4E-06 48.0 13.3 84 143-238 122-217 (276)
245 PF05891 Methyltransf_PK: AdoM 95.9 0.022 4.8E-07 52.1 6.6 72 141-224 55-129 (218)
246 KOG1501 Arginine N-methyltrans 95.8 0.014 3E-07 58.1 5.4 51 144-194 69-123 (636)
247 COG0500 SmtA SAM-dependent met 95.8 0.049 1.1E-06 44.4 7.8 53 145-198 52-109 (257)
248 TIGR00675 dcm DNA-methyltransf 95.7 0.019 4.2E-07 55.9 5.8 67 145-226 1-68 (315)
249 PRK10611 chemotaxis methyltran 95.6 0.056 1.2E-06 51.9 8.5 60 123-182 96-166 (287)
250 COG2384 Predicted SAM-dependen 95.5 0.059 1.3E-06 49.3 7.9 59 141-199 16-79 (226)
251 PF07091 FmrO: Ribosomal RNA m 95.5 0.028 6.1E-07 52.4 5.8 60 141-200 105-167 (251)
252 PF03141 Methyltransf_29: Puta 95.4 0.021 4.6E-07 58.1 5.1 56 127-182 99-161 (506)
253 KOG4058 Uncharacterized conser 95.3 0.028 6.1E-07 48.1 4.7 77 127-203 58-138 (199)
254 PF07942 N2227: N2227-like pro 95.3 0.14 3.1E-06 48.6 10.0 38 141-178 56-93 (270)
255 PF04672 Methyltransf_19: S-ad 95.2 0.049 1.1E-06 51.5 6.5 76 125-200 51-134 (267)
256 PF05148 Methyltransf_8: Hypot 94.9 0.043 9.3E-07 49.9 4.9 74 128-227 58-132 (219)
257 KOG4589 Cell division protein 94.9 0.066 1.4E-06 47.7 5.9 75 140-227 68-146 (232)
258 COG0270 Dcm Site-specific DNA 94.6 0.1 2.2E-06 51.2 7.3 72 143-227 4-77 (328)
259 KOG2912 Predicted DNA methylas 94.5 0.06 1.3E-06 51.7 5.1 80 146-230 107-191 (419)
260 COG1889 NOP1 Fibrillarin-like 94.4 0.14 3E-06 46.3 7.0 90 128-226 60-154 (231)
261 PRK10458 DNA cytosine methylas 94.2 0.3 6.5E-06 50.1 9.9 86 142-227 88-179 (467)
262 PF11599 AviRa: RRNA methyltra 93.9 0.12 2.6E-06 47.2 5.4 45 140-184 50-98 (246)
263 KOG2651 rRNA adenine N-6-methy 93.7 0.19 4.1E-06 49.5 6.8 42 140-181 152-194 (476)
264 KOG2078 tRNA modification enzy 93.7 0.044 9.6E-07 54.5 2.5 62 139-200 247-312 (495)
265 COG1565 Uncharacterized conser 93.7 0.26 5.6E-06 48.4 7.8 64 122-185 47-131 (370)
266 PF02636 Methyltransf_28: Puta 93.6 0.24 5.3E-06 46.5 7.4 44 142-185 19-72 (252)
267 KOG1227 Putative methyltransfe 93.6 0.026 5.6E-07 53.7 0.8 59 141-199 194-257 (351)
268 KOG3045 Predicted RNA methylas 93.5 0.097 2.1E-06 49.0 4.3 71 129-227 167-238 (325)
269 PF10237 N6-adenineMlase: Prob 92.9 0.37 8E-06 42.3 6.9 98 119-234 2-102 (162)
270 PF07757 AdoMet_MTase: Predict 92.7 0.1 2.3E-06 42.3 2.9 46 127-172 40-89 (112)
271 PF04989 CmcI: Cephalosporin h 92.7 0.15 3.3E-06 46.3 4.3 85 117-201 8-99 (206)
272 TIGR00497 hsdM type I restrict 92.6 0.5 1.1E-05 49.1 8.6 101 118-229 193-305 (501)
273 PF03686 UPF0146: Uncharacteri 92.6 0.62 1.3E-05 39.0 7.4 77 142-238 14-92 (127)
274 COG1568 Predicted methyltransf 92.4 0.26 5.5E-06 46.7 5.5 106 114-230 123-234 (354)
275 KOG1122 tRNA and rRNA cytosine 92.4 0.34 7.4E-06 48.4 6.6 85 133-227 233-322 (460)
276 KOG3115 Methyltransferase-like 91.8 0.17 3.7E-06 45.7 3.5 58 143-200 62-130 (249)
277 PF12147 Methyltransf_20: Puta 91.7 1.3 2.8E-05 42.4 9.3 59 141-199 135-200 (311)
278 COG0863 DNA modification methy 91.6 0.94 2E-05 43.2 8.8 61 124-185 206-266 (302)
279 KOG1709 Guanidinoacetate methy 91.6 1.2 2.7E-05 40.7 8.7 84 130-224 91-176 (271)
280 KOG3178 Hydroxyindole-O-methyl 91.0 0.52 1.1E-05 46.0 6.2 55 143-199 179-233 (342)
281 PF13578 Methyltransf_24: Meth 90.9 0.16 3.5E-06 40.6 2.3 69 146-225 1-77 (106)
282 COG1064 AdhP Zn-dependent alco 90.4 1.9 4.1E-05 42.3 9.5 91 137-243 162-255 (339)
283 COG1748 LYS9 Saccharopine dehy 90.3 1.4 3.1E-05 44.0 8.6 92 143-245 2-96 (389)
284 PF01739 CheR: CheR methyltran 90.2 0.57 1.2E-05 42.4 5.4 41 141-181 31-82 (196)
285 KOG2198 tRNA cytosine-5-methyl 89.8 0.89 1.9E-05 44.8 6.6 89 136-227 150-246 (375)
286 KOG1269 SAM-dependent methyltr 89.7 0.65 1.4E-05 46.1 5.7 65 139-203 108-176 (364)
287 KOG3924 Putative protein methy 89.6 0.67 1.4E-05 46.0 5.6 111 125-245 176-306 (419)
288 KOG2352 Predicted spermine/spe 89.0 1 2.3E-05 45.8 6.7 60 144-203 51-112 (482)
289 PF00416 Ribosomal_S13: Riboso 88.7 1.3 2.7E-05 36.1 5.8 50 334-383 9-60 (107)
290 PF02254 TrkA_N: TrkA-N domain 88.7 1 2.2E-05 36.4 5.4 47 150-201 4-54 (116)
291 KOG1596 Fibrillarin and relate 88.4 1 2.3E-05 41.8 5.6 82 137-227 152-236 (317)
292 PF04378 RsmJ: Ribosomal RNA s 88.4 0.77 1.7E-05 43.0 4.9 80 146-233 62-141 (245)
293 PRK12829 short chain dehydroge 88.1 4.5 9.6E-05 37.3 10.0 83 140-226 9-95 (264)
294 PF06831 H2TH: Formamidopyrimi 87.5 1.3 2.8E-05 35.0 5.0 57 327-383 15-76 (92)
295 cd08283 FDH_like_1 Glutathione 87.4 4.4 9.6E-05 40.3 10.1 48 135-182 178-228 (386)
296 PLN02253 xanthoxin dehydrogena 87.3 4 8.6E-05 38.3 9.3 82 141-225 17-102 (280)
297 PF02086 MethyltransfD12: D12 87.2 0.78 1.7E-05 42.8 4.3 56 128-183 7-62 (260)
298 KOG1331 Predicted methyltransf 87.1 0.46 9.9E-06 45.2 2.6 87 141-245 45-141 (293)
299 PF05206 TRM13: Methyltransfer 86.7 2.1 4.5E-05 40.5 6.8 64 139-203 16-89 (259)
300 COG1255 Uncharacterized protei 86.5 4.3 9.2E-05 33.5 7.5 73 143-235 15-89 (129)
301 PRK07533 enoyl-(acyl carrier p 86.1 4.6 0.0001 37.6 8.9 84 141-226 9-97 (258)
302 PRK04053 rps13p 30S ribosomal 86.1 1.3 2.8E-05 38.3 4.6 62 321-382 4-69 (149)
303 COG3510 CmcI Cephalosporin hyd 86.0 1.7 3.7E-05 39.1 5.4 82 117-201 45-132 (237)
304 PTZ00134 40S ribosomal protein 86.0 0.87 1.9E-05 39.5 3.5 63 321-383 9-75 (154)
305 PRK05867 short chain dehydroge 86.0 5.3 0.00012 36.8 9.2 84 141-226 8-95 (253)
306 COG1352 CheR Methylase of chem 85.9 2.1 4.6E-05 40.7 6.5 40 142-181 97-147 (268)
307 PRK07326 short chain dehydroge 85.5 6 0.00013 35.8 9.2 58 141-199 5-66 (237)
308 KOG1201 Hydroxysteroid 17-beta 85.4 4.4 9.5E-05 38.9 8.2 94 141-236 37-140 (300)
309 KOG0024 Sorbitol dehydrogenase 85.4 2.1 4.6E-05 41.6 6.1 48 134-181 162-212 (354)
310 cd00401 AdoHcyase S-adenosyl-L 85.4 3.1 6.7E-05 42.1 7.7 65 117-181 176-243 (413)
311 COG2961 ComJ Protein involved 85.1 3.3 7.1E-05 38.8 7.0 97 128-233 75-172 (279)
312 COG2933 Predicted SAM-dependen 85.0 1.8 4E-05 40.8 5.4 82 140-238 210-294 (358)
313 PRK07454 short chain dehydroge 84.9 8.5 0.00018 35.0 10.0 83 141-226 5-92 (241)
314 CHL00137 rps13 ribosomal prote 84.9 1.1 2.3E-05 37.5 3.5 48 335-382 12-61 (122)
315 KOG0822 Protein kinase inhibit 84.8 2.1 4.6E-05 44.1 6.1 85 128-224 351-446 (649)
316 KOG2920 Predicted methyltransf 84.7 0.66 1.4E-05 44.1 2.4 50 128-177 100-153 (282)
317 PRK07523 gluconate 5-dehydroge 84.6 6.9 0.00015 36.0 9.3 83 141-226 9-96 (255)
318 COG0099 RpsM Ribosomal protein 84.5 0.99 2.1E-05 37.2 3.0 47 336-382 13-61 (121)
319 PRK09072 short chain dehydroge 84.5 8.2 0.00018 35.8 9.8 83 141-226 4-89 (263)
320 PRK05179 rpsM 30S ribosomal pr 84.4 0.94 2E-05 37.8 3.0 49 335-383 12-62 (122)
321 TIGR00275 flavoprotein, HI0933 84.2 3.2 6.9E-05 41.7 7.2 64 320-383 267-331 (400)
322 PF11899 DUF3419: Protein of u 84.1 2.5 5.3E-05 42.3 6.3 58 124-184 21-78 (380)
323 PRK06949 short chain dehydroge 84.0 7.7 0.00017 35.6 9.3 83 141-226 8-95 (258)
324 PRK08340 glucose-1-dehydrogena 83.9 7.5 0.00016 36.0 9.3 80 144-226 2-85 (259)
325 COG0569 TrkA K+ transport syst 83.7 5 0.00011 37.0 7.8 71 144-226 2-75 (225)
326 TIGR03631 bact_S13 30S ribosom 83.5 1 2.3E-05 37.0 2.8 48 335-382 10-59 (113)
327 COG4798 Predicted methyltransf 83.5 1.5 3.3E-05 39.5 4.0 39 135-173 42-83 (238)
328 PRK08945 putative oxoacyl-(acy 83.2 8.8 0.00019 35.1 9.4 81 141-225 11-100 (247)
329 COG1063 Tdh Threonine dehydrog 82.9 3.6 7.9E-05 40.5 7.0 45 139-183 166-213 (350)
330 PRK07231 fabG 3-ketoacyl-(acyl 82.9 9.4 0.0002 34.8 9.4 81 142-226 5-90 (251)
331 PRK07063 short chain dehydroge 82.9 9.4 0.0002 35.2 9.5 82 141-225 6-94 (260)
332 cd05188 MDR Medium chain reduc 82.8 12 0.00025 34.3 10.0 92 140-242 133-227 (271)
333 PRK08862 short chain dehydroge 82.8 8.7 0.00019 35.1 9.1 82 141-225 4-91 (227)
334 KOG2793 Putative N2,N2-dimethy 82.7 6.7 0.00015 36.8 8.2 39 141-180 86-125 (248)
335 PRK07814 short chain dehydroge 82.7 8.8 0.00019 35.6 9.2 81 141-225 9-95 (263)
336 PRK08589 short chain dehydroge 82.4 10 0.00023 35.4 9.7 83 141-226 5-91 (272)
337 PRK07024 short chain dehydroge 82.4 10 0.00022 35.0 9.5 79 143-225 3-86 (257)
338 PRK06172 short chain dehydroge 82.2 9.2 0.0002 35.1 9.1 83 141-226 6-93 (253)
339 PRK07677 short chain dehydroge 82.2 9.2 0.0002 35.2 9.1 81 143-225 2-86 (252)
340 PF11968 DUF3321: Putative met 82.1 1.4 3E-05 40.4 3.3 61 143-227 53-114 (219)
341 PRK08339 short chain dehydroge 82.1 10 0.00023 35.3 9.5 82 141-225 7-93 (263)
342 PRK08226 short chain dehydroge 82.0 10 0.00022 35.0 9.4 83 141-226 5-91 (263)
343 PRK13394 3-hydroxybutyrate deh 81.9 9.6 0.00021 35.0 9.1 82 141-225 6-92 (262)
344 PRK07984 enoyl-(acyl carrier p 81.7 10 0.00022 35.5 9.3 85 141-227 5-94 (262)
345 KOG2360 Proliferation-associat 81.7 2.3 5E-05 42.1 4.9 77 123-199 195-276 (413)
346 PRK07774 short chain dehydroge 81.7 10 0.00022 34.6 9.2 84 141-227 5-93 (250)
347 PRK06505 enoyl-(acyl carrier p 81.7 9.2 0.0002 36.0 9.0 84 141-226 6-94 (271)
348 PRK08690 enoyl-(acyl carrier p 81.7 8.8 0.00019 35.8 8.8 84 141-226 5-93 (261)
349 PRK07478 short chain dehydroge 81.6 12 0.00025 34.4 9.6 83 141-225 5-91 (254)
350 PRK07035 short chain dehydroge 81.5 11 0.00025 34.4 9.5 84 141-226 7-94 (252)
351 PRK08213 gluconate 5-dehydroge 81.5 11 0.00024 34.8 9.3 82 141-226 11-98 (259)
352 PRK06124 gluconate 5-dehydroge 81.3 11 0.00024 34.6 9.3 82 141-226 10-97 (256)
353 PRK05786 fabG 3-ketoacyl-(acyl 81.0 12 0.00027 33.8 9.4 59 141-200 4-66 (238)
354 PRK01103 formamidopyrimidine/5 80.8 2.8 6.1E-05 40.0 5.1 55 329-383 149-208 (274)
355 PRK07666 fabG 3-ketoacyl-(acyl 80.7 11 0.00025 34.1 9.1 82 142-226 7-93 (239)
356 PRK05866 short chain dehydroge 80.6 12 0.00027 35.6 9.6 82 141-225 39-125 (293)
357 PRK06194 hypothetical protein; 80.4 13 0.00028 34.9 9.5 82 142-226 6-92 (287)
358 PRK05872 short chain dehydroge 80.3 14 0.0003 35.1 9.9 82 141-226 8-94 (296)
359 PLN02780 ketoreductase/ oxidor 80.3 12 0.00025 36.4 9.4 58 141-198 52-115 (320)
360 PRK08643 acetoin reductase; Va 80.3 11 0.00025 34.5 9.0 82 142-226 2-88 (256)
361 PRK05854 short chain dehydroge 80.1 13 0.00028 35.8 9.6 83 141-225 13-101 (313)
362 TIGR01963 PHB_DH 3-hydroxybuty 80.0 12 0.00025 34.3 8.9 80 143-225 2-86 (255)
363 PTZ00357 methyltransferase; Pr 79.9 5.2 0.00011 42.8 6.9 91 144-235 703-815 (1072)
364 PRK09880 L-idonate 5-dehydroge 79.9 9.5 0.00021 37.1 8.7 47 135-181 163-212 (343)
365 PRK12823 benD 1,6-dihydroxycyc 79.8 14 0.0003 34.1 9.4 81 141-225 7-92 (260)
366 PRK06200 2,3-dihydroxy-2,3-dih 79.6 13 0.00028 34.4 9.2 81 141-226 5-89 (263)
367 PF05050 Methyltransf_21: Meth 79.6 3.2 7E-05 35.3 4.7 36 147-182 1-42 (167)
368 PRK06138 short chain dehydroge 79.5 14 0.00031 33.6 9.3 82 141-226 4-90 (252)
369 PLN03209 translocon at the inn 79.4 9.5 0.00021 40.3 8.8 80 137-226 75-168 (576)
370 PRK03659 glutathione-regulated 79.4 9.6 0.00021 40.6 9.1 70 143-227 401-474 (601)
371 PRK08217 fabG 3-ketoacyl-(acyl 79.3 15 0.00032 33.5 9.4 82 141-226 4-91 (253)
372 PRK07576 short chain dehydroge 79.1 14 0.00029 34.5 9.2 81 141-225 8-94 (264)
373 PRK05876 short chain dehydroge 78.9 15 0.00033 34.5 9.5 83 141-226 5-92 (275)
374 PRK08267 short chain dehydroge 78.8 15 0.00033 33.8 9.4 80 143-226 2-86 (260)
375 PRK05650 short chain dehydroge 78.7 15 0.00032 34.2 9.3 80 144-226 2-86 (270)
376 PRK06181 short chain dehydroge 78.7 15 0.00033 33.8 9.4 80 143-225 2-86 (263)
377 PRK07062 short chain dehydroge 78.6 14 0.00031 34.1 9.1 83 141-226 7-96 (265)
378 PRK08277 D-mannonate oxidoredu 78.5 16 0.00035 34.1 9.5 83 141-226 9-96 (278)
379 PRK07067 sorbitol dehydrogenas 78.3 16 0.00034 33.7 9.3 79 142-225 6-88 (257)
380 PRK08251 short chain dehydroge 78.3 16 0.00034 33.4 9.2 80 142-225 2-89 (248)
381 PRK06196 oxidoreductase; Provi 78.3 13 0.00029 35.6 9.0 80 141-226 25-108 (315)
382 PF06962 rRNA_methylase: Putat 77.8 5.6 0.00012 34.0 5.4 53 165-227 1-56 (140)
383 PRK09242 tropinone reductase; 77.7 17 0.00038 33.4 9.4 84 141-227 8-98 (257)
384 PRK12826 3-ketoacyl-(acyl-carr 77.7 18 0.0004 32.8 9.5 83 141-226 5-92 (251)
385 PRK08265 short chain dehydroge 77.7 17 0.00038 33.6 9.4 80 141-226 5-89 (261)
386 PRK09424 pntA NAD(P) transhydr 77.5 5.1 0.00011 41.7 6.2 43 139-181 162-206 (509)
387 PRK08085 gluconate 5-dehydroge 77.2 18 0.00038 33.3 9.3 83 141-226 8-95 (254)
388 PRK12939 short chain dehydroge 77.2 19 0.00041 32.7 9.4 82 141-225 6-92 (250)
389 PRK06720 hypothetical protein; 77.1 24 0.00053 30.9 9.6 84 141-227 15-103 (169)
390 PRK06139 short chain dehydroge 77.1 16 0.00035 35.6 9.3 82 141-225 6-92 (330)
391 PRK06113 7-alpha-hydroxysteroi 76.9 19 0.00042 33.0 9.5 82 141-226 10-97 (255)
392 PLN02896 cinnamyl-alcohol dehy 76.8 15 0.00032 35.9 9.0 59 141-200 9-71 (353)
393 PRK07102 short chain dehydroge 76.7 15 0.00032 33.5 8.5 77 143-225 2-84 (243)
394 PRK09496 trkA potassium transp 76.7 43 0.00093 33.8 12.7 69 126-199 213-287 (453)
395 TIGR03629 arch_S13P archaeal r 76.6 2.4 5.1E-05 36.5 2.9 49 335-383 16-66 (144)
396 PRK07453 protochlorophyllide o 76.4 21 0.00045 34.3 9.9 82 141-225 5-91 (322)
397 PRK12429 3-hydroxybutyrate deh 76.2 20 0.00043 32.7 9.3 81 142-225 4-89 (258)
398 PRK07109 short chain dehydroge 76.2 18 0.00039 35.3 9.4 83 141-226 7-94 (334)
399 PF03486 HI0933_like: HI0933-l 76.0 9.3 0.0002 38.7 7.4 64 320-383 274-339 (409)
400 PRK06935 2-deoxy-D-gluconate 3 75.9 21 0.00045 32.9 9.4 83 141-226 14-100 (258)
401 COG1867 TRM1 N2,N2-dimethylgua 75.8 14 0.00029 36.7 8.2 59 142-200 53-115 (380)
402 KOG3350 Uncharacterized conser 75.8 32 0.0007 30.7 9.6 103 119-240 50-164 (217)
403 PF07279 DUF1442: Protein of u 75.6 20 0.00043 32.9 8.6 73 126-198 26-107 (218)
404 PRK07890 short chain dehydroge 75.5 18 0.00039 33.1 8.8 81 141-225 4-90 (258)
405 PRK06603 enoyl-(acyl carrier p 75.4 20 0.00044 33.2 9.2 84 141-226 7-95 (260)
406 PRK06079 enoyl-(acyl carrier p 75.3 17 0.00036 33.6 8.6 83 141-227 6-93 (252)
407 PRK06182 short chain dehydroge 75.0 18 0.00038 33.8 8.7 78 142-227 3-84 (273)
408 PRK08628 short chain dehydroge 74.9 23 0.0005 32.5 9.4 82 141-226 6-92 (258)
409 PRK04184 DNA topoisomerase VI 74.8 9.4 0.0002 39.9 7.2 61 320-383 243-306 (535)
410 PRK06997 enoyl-(acyl carrier p 74.7 16 0.00034 34.1 8.2 84 141-226 5-93 (260)
411 PRK07889 enoyl-(acyl carrier p 74.6 15 0.00034 34.0 8.2 82 141-226 6-94 (256)
412 PRK08159 enoyl-(acyl carrier p 74.6 19 0.0004 33.9 8.8 84 141-226 9-97 (272)
413 PRK07791 short chain dehydroge 74.0 24 0.00052 33.4 9.4 84 141-226 5-101 (286)
414 PRK06125 short chain dehydroge 73.8 22 0.00049 32.7 9.0 78 141-225 6-89 (259)
415 PRK08303 short chain dehydroge 73.8 18 0.0004 34.7 8.7 82 141-225 7-103 (305)
416 PRK07831 short chain dehydroge 73.8 27 0.00057 32.3 9.6 84 141-226 16-106 (262)
417 PRK05993 short chain dehydroge 73.8 20 0.00044 33.5 8.8 76 142-225 4-84 (277)
418 PRK06914 short chain dehydroge 73.4 24 0.00051 32.9 9.2 80 142-225 3-89 (280)
419 TIGR00561 pntA NAD(P) transhyd 73.4 19 0.0004 37.6 8.9 41 141-181 163-205 (511)
420 PRK03562 glutathione-regulated 73.4 26 0.00056 37.5 10.4 54 143-201 401-456 (621)
421 PRK07097 gluconate 5-dehydroge 73.3 27 0.00059 32.3 9.5 85 141-227 9-97 (265)
422 TIGR03325 BphB_TodD cis-2,3-di 73.3 23 0.0005 32.7 9.0 79 141-225 4-87 (262)
423 PLN02989 cinnamyl-alcohol dehy 72.9 16 0.00034 35.0 8.0 59 141-200 4-69 (325)
424 PRK08324 short chain dehydroge 72.4 23 0.00049 38.3 9.8 82 141-226 421-507 (681)
425 PRK06197 short chain dehydroge 72.3 23 0.00049 33.8 8.9 82 141-225 15-103 (306)
426 PRK10669 putative cation:proto 72.3 6.1 0.00013 41.6 5.3 51 143-200 418-472 (558)
427 KOG1562 Spermidine synthase [A 72.1 5.8 0.00012 38.2 4.4 75 141-225 121-203 (337)
428 PRK14810 formamidopyrimidine-D 72.0 9.7 0.00021 36.3 6.1 56 328-383 147-207 (272)
429 PRK12481 2-deoxy-D-gluconate 3 72.0 23 0.0005 32.6 8.7 81 141-226 7-92 (251)
430 PRK07825 short chain dehydroge 71.9 29 0.00062 32.3 9.3 78 142-225 5-86 (273)
431 TIGR03206 benzo_BadH 2-hydroxy 71.7 34 0.00074 31.0 9.7 82 142-226 3-89 (250)
432 PRK08415 enoyl-(acyl carrier p 71.6 24 0.00053 33.2 8.8 84 141-226 4-92 (274)
433 PRK12384 sorbitol-6-phosphate 71.6 26 0.00057 32.1 8.9 80 142-225 2-89 (259)
434 PRK06057 short chain dehydroge 71.5 24 0.00051 32.4 8.6 78 141-225 6-87 (255)
435 PRK05875 short chain dehydroge 71.0 31 0.00067 32.0 9.4 81 141-225 6-94 (276)
436 PRK07417 arogenate dehydrogena 70.6 12 0.00026 35.5 6.5 75 144-238 2-78 (279)
437 PLN03154 putative allyl alcoho 70.6 16 0.00035 35.7 7.5 48 136-183 153-203 (348)
438 TIGR00518 alaDH alanine dehydr 70.2 20 0.00044 35.7 8.2 43 141-183 166-210 (370)
439 PRK05565 fabG 3-ketoacyl-(acyl 70.0 32 0.0007 31.0 9.1 83 142-227 5-93 (247)
440 PF02005 TRM: N2,N2-dimethylgu 70.0 15 0.00033 36.7 7.2 82 142-235 50-138 (377)
441 cd01078 NAD_bind_H4MPT_DH NADP 70.0 29 0.00062 30.8 8.5 79 141-228 27-108 (194)
442 TIGR00936 ahcY adenosylhomocys 69.9 16 0.00034 37.0 7.4 62 118-179 170-234 (406)
443 PRK09186 flagellin modificatio 69.8 32 0.00069 31.4 9.0 82 141-225 3-91 (256)
444 PF03435 Saccharop_dh: Sacchar 69.8 20 0.00043 35.6 8.1 88 145-244 1-94 (386)
445 PRK08416 7-alpha-hydroxysteroi 69.5 36 0.00079 31.4 9.4 83 141-225 7-95 (260)
446 TIGR01832 kduD 2-deoxy-D-gluco 69.2 40 0.00086 30.6 9.5 81 141-226 4-89 (248)
447 TIGR03366 HpnZ_proposed putati 69.1 18 0.00039 34.1 7.3 48 135-182 114-164 (280)
448 TIGR02622 CDP_4_6_dhtase CDP-g 69.0 15 0.00032 35.8 7.0 58 142-200 4-65 (349)
449 PRK06179 short chain dehydroge 68.9 22 0.00047 33.0 7.8 75 142-227 4-83 (270)
450 TIGR02415 23BDH acetoin reduct 68.7 37 0.00079 30.9 9.2 80 144-227 2-87 (254)
451 PRK08594 enoyl-(acyl carrier p 68.3 32 0.00069 31.9 8.8 83 141-226 6-96 (257)
452 PRK07904 short chain dehydroge 68.2 33 0.00072 31.7 8.8 83 141-227 7-97 (253)
453 PF07669 Eco57I: Eco57I restri 67.8 2.9 6.2E-05 33.8 1.3 15 217-231 2-16 (106)
454 TIGR01289 LPOR light-dependent 67.7 43 0.00094 32.1 9.8 83 142-226 3-90 (314)
455 PRK07806 short chain dehydroge 67.7 33 0.00072 31.2 8.6 83 141-226 5-93 (248)
456 COG2081 Predicted flavoprotein 67.5 14 0.0003 37.1 6.2 51 332-383 282-332 (408)
457 PLN02819 lysine-ketoglutarate 67.4 23 0.00049 40.2 8.6 89 142-242 569-673 (1042)
458 PRK06180 short chain dehydroge 67.3 38 0.00082 31.6 9.1 78 142-225 4-86 (277)
459 TIGR03201 dearomat_had 6-hydro 67.3 20 0.00043 34.9 7.5 46 136-181 161-208 (349)
460 PRK05855 short chain dehydroge 67.3 32 0.00069 35.6 9.4 81 142-225 315-400 (582)
461 PLN02657 3,8-divinyl protochlo 67.2 19 0.00042 36.0 7.4 79 141-225 59-144 (390)
462 PRK06484 short chain dehydroge 67.2 35 0.00076 35.2 9.6 80 142-225 269-351 (520)
463 PRK05717 oxidoreductase; Valid 66.8 40 0.00087 30.9 9.1 81 141-227 9-94 (255)
464 PRK09291 short chain dehydroge 66.7 35 0.00075 31.2 8.6 74 143-225 3-81 (257)
465 PRK06484 short chain dehydroge 66.7 32 0.0007 35.4 9.2 80 141-225 4-87 (520)
466 PRK13945 formamidopyrimidine-D 66.6 10 0.00022 36.4 5.0 56 328-383 157-217 (282)
467 PRK08177 short chain dehydroge 66.4 22 0.00048 32.0 7.1 74 144-226 3-80 (225)
468 cd08254 hydroxyacyl_CoA_DH 6-h 66.1 16 0.00035 34.8 6.5 44 138-181 162-207 (338)
469 cd01065 NAD_bind_Shikimate_DH 66.0 73 0.0016 26.7 9.9 43 141-183 18-63 (155)
470 PRK06500 short chain dehydroge 66.0 52 0.0011 29.7 9.6 81 141-226 5-89 (249)
471 PRK06940 short chain dehydroge 65.6 42 0.00091 31.4 9.1 80 143-227 3-86 (275)
472 PRK10445 endonuclease VIII; Pr 65.4 16 0.00035 34.6 6.1 56 328-383 141-204 (263)
473 COG0300 DltE Short-chain dehyd 65.1 63 0.0014 30.7 10.0 87 141-229 5-96 (265)
474 PRK08993 2-deoxy-D-gluconate 3 64.9 45 0.00097 30.6 9.0 81 141-226 9-94 (253)
475 TIGR00577 fpg formamidopyrimid 64.7 11 0.00025 35.8 5.0 55 329-383 149-208 (272)
476 PRK07074 short chain dehydroge 64.6 57 0.0012 29.8 9.7 78 143-225 3-85 (257)
477 PRK08278 short chain dehydroge 64.5 46 0.001 31.0 9.1 82 141-226 5-99 (273)
478 PRK06114 short chain dehydroge 64.5 56 0.0012 29.9 9.6 83 141-226 7-95 (254)
479 COG5379 BtaA S-adenosylmethion 64.2 17 0.00037 35.0 5.9 47 137-183 59-105 (414)
480 PRK12828 short chain dehydroge 64.2 44 0.00096 29.9 8.7 81 141-226 6-91 (239)
481 PRK06482 short chain dehydroge 64.2 51 0.0011 30.6 9.3 77 143-225 3-84 (276)
482 PLN02740 Alcohol dehydrogenase 64.1 20 0.00044 35.4 6.9 46 136-181 193-241 (381)
483 PRK10538 malonic semialdehyde 64.0 54 0.0012 29.9 9.3 77 144-225 2-82 (248)
484 TIGR02818 adh_III_F_hyde S-(hy 63.9 24 0.00053 34.7 7.4 47 135-181 179-228 (368)
485 TIGR02822 adh_fam_2 zinc-bindi 63.8 26 0.00057 33.9 7.5 48 135-182 159-208 (329)
486 PRK12743 oxidoreductase; Provi 63.7 47 0.001 30.5 8.9 81 142-226 2-89 (256)
487 cd08293 PTGR2 Prostaglandin re 63.7 27 0.00059 33.6 7.6 97 138-244 149-251 (345)
488 COG4221 Short-chain alcohol de 63.7 60 0.0013 30.4 9.2 81 142-226 6-90 (246)
489 PF13561 adh_short_C2: Enoyl-( 63.5 17 0.00036 33.3 5.8 70 156-227 13-83 (241)
490 cd08295 double_bond_reductase_ 63.4 31 0.00066 33.3 7.9 48 136-183 146-196 (338)
491 cd08237 ribitol-5-phosphate_DH 63.3 19 0.0004 35.1 6.4 44 138-181 160-207 (341)
492 KOG1205 Predicted dehydrogenas 63.3 41 0.00089 32.2 8.4 83 141-226 11-100 (282)
493 KOG2782 Putative SAM dependent 63.3 6.9 0.00015 36.0 2.9 56 127-182 29-86 (303)
494 PLN02662 cinnamyl-alcohol dehy 63.0 31 0.00068 32.8 7.8 58 142-200 4-68 (322)
495 cd08239 THR_DH_like L-threonin 62.9 27 0.00059 33.6 7.4 48 134-181 156-206 (339)
496 PRK06198 short chain dehydroge 62.9 47 0.001 30.4 8.8 82 141-225 5-92 (260)
497 PRK13656 trans-2-enoyl-CoA red 62.7 74 0.0016 32.1 10.3 85 141-228 40-142 (398)
498 PRK08309 short chain dehydroge 62.5 91 0.002 27.5 10.1 90 144-237 2-95 (177)
499 PRK05653 fabG 3-ketoacyl-(acyl 62.3 57 0.0012 29.2 9.1 80 142-225 5-90 (246)
500 PRK12748 3-ketoacyl-(acyl-carr 61.7 59 0.0013 29.8 9.2 82 141-225 4-103 (256)
No 1
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-57 Score=422.95 Aligned_cols=254 Identities=39% Similarity=0.659 Sum_probs=237.1
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~ 193 (384)
++++.+||||+.|+.++++|++.+++.+++.|||||||.|++|..|++++++|+|||+|+++++.+++.....+|+++++
T Consensus 3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 56799999999999999999999999999999999999999999999999999999999999999999987667999999
Q ss_pred ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (384)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls 273 (384)
+|+++.+++++ ..++.||+|+||+|+++++.+|++....+..+++|+|+|+|+|++ |.||++.||++|
T Consensus 83 ~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls 150 (259)
T COG0030 83 GDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS 150 (259)
T ss_pred CchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence 99999988642 157899999999999999999999887788999999999999999 899999999999
Q ss_pred eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHHH
Q 016715 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353 (384)
Q Consensus 274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~ 353 (384)
|++|+++++++++.|++++|+|+|+|||+||+++|++....+ ..+.+.|+.+++.+|.||||+|+|+|+.+++ +.+
T Consensus 151 V~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~-~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~---~~~ 226 (259)
T COG0030 151 VLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSP-VKDEEKFFKFVKAAFSQRRKTLRNNLKNLFG---LEE 226 (259)
T ss_pred hhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCc-ccCHHHHHHHHHHHHhhhhHHHHHHHHhhhh---HHH
Confidence 999999999999999999999999999999999997754443 4578999999999999999999999999876 678
Q ss_pred HHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 354 ALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 354 ~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
+|+.+|++++.|+++|+++||++|++.+..
T Consensus 227 ~l~~~~i~~~~R~e~ls~~~f~~L~~~l~~ 256 (259)
T COG0030 227 VLEAAGIDPNARAENLSPEDFLKLANALKG 256 (259)
T ss_pred HHHhcCCCcccChhhCCHHHHHHHHHHHhh
Confidence 899999999999999999999999998754
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=100.00 E-value=1.8e-52 Score=400.19 Aligned_cols=255 Identities=32% Similarity=0.494 Sum_probs=230.7
Q ss_pred hCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---C
Q 016715 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I 186 (384)
Q Consensus 110 ~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~ 186 (384)
.+++++++.+||||+.|+.++++|++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++.. .
T Consensus 5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~ 84 (294)
T PTZ00338 5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA 84 (294)
T ss_pred cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 4577999999999999999999999999999999999999999999999999988999999999999999998763 3
Q ss_pred CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCC
Q 016715 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266 (384)
Q Consensus 187 ~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~ 266 (384)
++++++++|+++.++ +.+|.||+|+||+|+++++.++++....+..+++|+|+|+|+|++ |.||+
T Consensus 85 ~~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~ 149 (294)
T PTZ00338 85 SKLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGD 149 (294)
T ss_pred CcEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCC
Confidence 589999999998754 357999999999999999999998767788999999999999999 89999
Q ss_pred CCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhh--
Q 016715 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH-- 344 (384)
Q Consensus 267 ~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~-- 344 (384)
+.|+++||++|++++++.+++|++.+|+|+|+|||+||+|+|++.+. ..+.+.|+.+++.+|.||||+|+|+|+.
T Consensus 150 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdSavv~l~~~~~~~---~~~~~~~~~~v~~~F~~rrK~l~~~l~~~~ 226 (294)
T PTZ00338 150 ELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPP---DVDFEEWDGLLRICFSRKNKTLSAIFKTKS 226 (294)
T ss_pred cccCHHHHHHHHHhceEEEEEeCchhCCCCCCcEEEEEEEEECCCCC---CcCHHHHHHHHHHHHhhccHHHHHHhCcch
Confidence 99999999999999999999999999999999999999999987532 2457789999999999999999988754
Q ss_pred -----------hcC-------------hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 345 -----------LCT-------------SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 345 -----------~~~-------------~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
+++ ++.+.++|+++|++ +.|||+|+++||++|++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~R~e~l~~~~f~~L~~~~~~ 288 (294)
T PTZ00338 227 VLQTLEHNYKSWCTMINKKVPVSLEPFKEFIAEILEDSGMF-EKRSVKLDIDDFLKLLLAFNK 288 (294)
T ss_pred hHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHcCCc-ccChhhCCHHHHHHHHHHHHH
Confidence 322 34566789999996 899999999999999998864
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=100.00 E-value=1.7e-51 Score=391.28 Aligned_cols=266 Identities=36% Similarity=0.613 Sum_probs=241.3
Q ss_pred HHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Q 016715 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 103 ~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~ 182 (384)
.+.+.+...++++++.+||||++++.+++.+++.+.+.++++|||||||+|.+|..+++++.+|+|+|+|+.|++.++++
T Consensus 4 ~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAET 83 (272)
T ss_pred hHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHh
Confidence 44566778899999999999999999999999999998999999999999999999999988999999999999999988
Q ss_pred hcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcC
Q 016715 183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP 262 (384)
Q Consensus 183 ~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a 262 (384)
+.. ++++++++|+.++++++ -.++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++ +
T Consensus 84 ~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a 149 (272)
T PRK00274 84 FAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-A 149 (272)
T ss_pred hcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-C
Confidence 754 68999999999987643 115899999999999999999997655578899999999999999 8
Q ss_pred CCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHH
Q 016715 263 SLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342 (384)
Q Consensus 263 ~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l 342 (384)
.||++.|+++||++|++++++++++|+++.|+|+|+|||+||+|+|++.+.++ ..+.+.|..+++++|.+|||+|+++|
T Consensus 150 ~pg~~~y~~lSv~~~~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~l 228 (272)
T PRK00274 150 KPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVP-VKDEELFFRVVKAAFAQRRKTLRNNL 228 (272)
T ss_pred CCCCccccHHHHHHHHHcceEEEEEeChhhCCCCCCceEEEEEEEECCCCCCC-cccHHHHHHHHHHHHhchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754333 34578899999999999999999999
Q ss_pred hhhcC-hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 343 QHLCT-SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 343 ~~~~~-~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
+.+++ .+.+.++|+.+|++++.||++|+++||++|++.+.+
T Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~~r~~~l~~~~~~~L~~~~~~ 270 (272)
T PRK00274 229 KNLFGSKEKLEEALEAAGIDPNRRAETLSVEEFVRLANALAA 270 (272)
T ss_pred HhhccchHHHHHHHHHCCCCcCCCceeCCHHHHHHHHHHHHh
Confidence 99875 566778899999999999999999999999998764
No 4
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=100.00 E-value=2.9e-49 Score=372.43 Aligned_cols=253 Identities=37% Similarity=0.630 Sum_probs=229.7
Q ss_pred CCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEE
Q 016715 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (384)
Q Consensus 113 ~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~ 192 (384)
++|++.+||||+.|+.+++++++.++..++++|||||||+|.+|..|++++.+|+++|+|+.+++.+++++...++++++
T Consensus 1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~ 80 (253)
T TIGR00755 1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVI 80 (253)
T ss_pred CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEE
Confidence 36899999999999999999999999888999999999999999999999889999999999999999887655689999
Q ss_pred EccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccc
Q 016715 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI 272 (384)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~l 272 (384)
++|+.+.++... +..+.|++|+||+++++++.+++. ...+..+++|+|+|+|+|++ +.||++.|+++
T Consensus 81 ~~D~~~~~~~~~-----------d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~l 147 (253)
T TIGR00755 81 EGDALKVDLPDF-----------PKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRL 147 (253)
T ss_pred ECchhcCChhHc-----------CCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHH
Confidence 999999876420 112599999999999999999995 33467899999999999999 89999999999
Q ss_pred eeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHH
Q 016715 273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352 (384)
Q Consensus 273 svl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~ 352 (384)
|+++|+++++++++.|++.+|+|+|+|||++|+|+|++.+ ...+.+.|..+++++|.+|||+|+|+|+.+++.+...
T Consensus 148 sv~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~---~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~ 224 (253)
T TIGR00755 148 SVLVQYFANVEIVFKVPPSAFYPPPKVDSAVVRLIPREQF---PVKDIALFEKLLKAAFSQRRKTLRNNLKQLLKASKLE 224 (253)
T ss_pred HHHHHHHcceEEEEEEchhhCcCCCCeeEEEEEEEECCCC---CcccHHHHHHHHHHHHccchHHHHHHHhhhcchhHHH
Confidence 9999999999999999999999999999999999998764 2346788999999999999999999999998877777
Q ss_pred HHHHhCCCCCCCCCCcCCHHHHHHHHHHH
Q 016715 353 KALGDVGLPATSRPEELTLDDFVKLHNLI 381 (384)
Q Consensus 353 ~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~ 381 (384)
.+|+..|+++++|+++||++||++|++.+
T Consensus 225 ~~l~~~~i~~~~r~~~l~~~~~~~l~~~~ 253 (253)
T TIGR00755 225 EVLEQLGLDPTARAEQLSPEDFLRLANLL 253 (253)
T ss_pred HHHHHCCcCCCCCcccCCHHHHHHHHHhC
Confidence 88999999999999999999999999864
No 5
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=100.00 E-value=1.6e-48 Score=369.13 Aligned_cols=259 Identities=35% Similarity=0.599 Sum_probs=233.4
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~ 193 (384)
++++.+||||+.|+.++++|++.+++.+++.|||||+|+|.+|..|++.+.+|+++|+|+.+++.+++++...+++++++
T Consensus 3 k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 3 KPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred CCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 68899999999999999999999999999999999999999999999999999999999999999999887667999999
Q ss_pred ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCC-eeEEEEEeeHHHHHHHhcCCCCCCCcccc
Q 016715 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRPI 272 (384)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~-~~~~~~~~qke~a~rl~~a~pg~~~y~~l 272 (384)
+|+++++..... ......||+|+||+++++++.+++..... ...+++|+|+|+|+|++ +.||++.|+++
T Consensus 83 ~D~l~~~~~~~~---------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~l 152 (262)
T PF00398_consen 83 GDFLKWDLYDLL---------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSRL 152 (262)
T ss_dssp S-TTTSCGGGHC---------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSHH
T ss_pred cchhccccHHhh---------cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccchh
Confidence 999999876421 24678999999999999999999873333 68899999999999999 89999999999
Q ss_pred eeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhcChHHHH
Q 016715 273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352 (384)
Q Consensus 273 svl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~ 352 (384)
|+++|++++++.++.+++++|+|+|+|||++|+|+|++.+.++ ..+.+.|.++++++|.+|||+|+++|+.+++.+.++
T Consensus 153 sv~~q~~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~L~~~~~~~~~~ 231 (262)
T PF00398_consen 153 SVLAQAFFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIP-PEDMDAFEYFVRQLFSQRRKTLRNSLKSLFPGEQLE 231 (262)
T ss_dssp HHHHHHHEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS--CSHHHHHHHHHHHHHTTTTSBHHHHTTCTHHHHHHH
T ss_pred hhhhhhhhceeEecccCCccccCCCCCceEEEEEEECCCCCCc-ccCHHHHHHHHHHHHhCcchHHHHHHhhhcCHHHHH
Confidence 9999999999999999999999999999999999999875443 456899999999999999999999999998888888
Q ss_pred HHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 353 KALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 353 ~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
.+++.+|++++.|+++|+++||++|++.+++
T Consensus 232 ~~~~~~~i~~~~r~~~ls~~~~~~l~~~l~k 262 (262)
T PF00398_consen 232 ELLEKAGIDPNARAEELSPEQFLKLFKYLNK 262 (262)
T ss_dssp HHHHHCTHTTTTCGGCHHHHHHHHHHHHHHH
T ss_pred HhhhhcCCCCCCCcccCCHHHHHHHHHHhhC
Confidence 8888899999999999999999999999875
No 6
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=100.00 E-value=2.9e-47 Score=359.70 Aligned_cols=251 Identities=32% Similarity=0.524 Sum_probs=222.1
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~ 193 (384)
+|++.+||||+.|++++++|++.++..++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++...+++++++
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 68999999999999999999999998889999999999999999999998899999999999999999886556899999
Q ss_pred ccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccce
Q 016715 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (384)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~ls 273 (384)
+|+.+++++ .+|.|++|+||+++++++.++... .+..+++|+|+|+|+|++ +.||++.||++|
T Consensus 82 ~D~~~~~~~--------------~~d~Vv~NlPy~i~s~~~~~l~~~--~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls 144 (258)
T PRK14896 82 GDALKVDLP--------------EFNKVVSNLPYQISSPITFKLLKH--GFEPAVLMYQKEFAERMV-AKPGTKEYGRLS 144 (258)
T ss_pred eccccCCch--------------hceEEEEcCCcccCcHHHHHHHhh--ccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence 999987642 468999999999999999988763 355689999999999999 899999999999
Q ss_pred eeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhhhc---ChHH
Q 016715 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLE 350 (384)
Q Consensus 274 vl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~---~~~~ 350 (384)
++.+++++++.++.+++..|+|+|+|||+||+|+|++. .. ...+.+.|+.+++.+|.+|||+|+|+|+.++ +.+.
T Consensus 145 v~~~~~~~~~~~~~v~~~~F~P~PkV~s~vi~l~~~~~-~~-~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~ 222 (258)
T PRK14896 145 VMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTPREP-KY-EVYDEDFFDDFVKALFQHRRKTLRNALKNSAHISGKED 222 (258)
T ss_pred HHHHHHeeeEEEEEeChHhCCCCCCceEEEEEEEECCC-CC-CCchHHHHHHHHHHHHccccHHHHHHHhhhccccchhH
Confidence 99999999999999999999999999999999999873 22 2345678999999999999999999999874 3222
Q ss_pred HHHHHHhC-CCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 351 IEKALGDV-GLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 351 ~~~~l~~~-~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
...++..+ +.++++||++||++||++|++.+..
T Consensus 223 ~~~~~~~~~~~~~~~R~e~L~~~~~~~l~~~~~~ 256 (258)
T PRK14896 223 IKAVVEALPEELLNKRVFQLSPEEIAELANLLYE 256 (258)
T ss_pred HHHHHHHcCCCCcCCCCccCCHHHHHHHHHHHHh
Confidence 34445665 4557999999999999999998754
No 7
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=323.41 Aligned_cols=257 Identities=34% Similarity=0.482 Sum_probs=229.3
Q ss_pred HhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-
Q 016715 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID- 187 (384)
Q Consensus 109 ~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~- 187 (384)
...+..+++.+|||++.++.+++.|++..++++++.|||||+|||.+|..|++.|++|+|+|+|+.|++.+.++..+.+
T Consensus 26 ~~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~ 105 (315)
T KOG0820|consen 26 NSGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK 105 (315)
T ss_pred cccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred --CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCC
Q 016715 188 --QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR 265 (384)
Q Consensus 188 --~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg 265 (384)
.+++++||+++.++ +.||.+|+|+||+|+++++.+|+.++..+.++++|+|+|++.|+. +.||
T Consensus 106 ~~kLqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pg 170 (315)
T KOG0820|consen 106 SGKLQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPG 170 (315)
T ss_pred cceeeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCC
Confidence 79999999999875 478999999999999999999999999999999999999999998 8999
Q ss_pred CCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCchHHHHHhh-
Q 016715 266 TSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH- 344 (384)
Q Consensus 266 ~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~- 344 (384)
++.|+++|+.+|++.+++.+++|++++|.|+|+|+|++++++|+..+. +.+..+|+.+++.+|..++|++....+.
T Consensus 171 d~~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~p---p~~~~ewdg~lri~F~rkNktl~a~fk~~ 247 (315)
T KOG0820|consen 171 DSLYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRP---PVDFHEWDGLLRICFLRKNKTLMAPFKSS 247 (315)
T ss_pred CchhceeehhhHHhhcchhheeecccccCCCCccccceeEeecCCCCC---ccchHHHHHHHHHHHHHHhHHhhcchhhh
Confidence 999999999999999999999999999999999999999999987542 3478899999999999999977443321
Q ss_pred -----h-------cC------------hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHhC
Q 016715 345 -----L-------CT------------SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQV 384 (384)
Q Consensus 345 -----~-------~~------------~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~~ 384 (384)
+ ++ .+.+.++|...++ ..+|++.++.+||++|...|+++
T Consensus 248 ~v~~~ie~n~~~~~s~~n~~~~~~~~~~~~~~~il~~~~~-~~~Ra~k~~~~DFlrLL~~f~~~ 310 (315)
T KOG0820|consen 248 SVLQKIEKNYKKRESLDNIMIDLDFNLKPKIYNILFAGLL-ADKRARKMTVDDFLRLLLAFNAV 310 (315)
T ss_pred HHHHHhhhcccccccccccccccccchhHHHHHHHHhcch-hhcccccCCHHHHHHHhhhhhhc
Confidence 1 11 1335667776665 68999999999999999888753
No 8
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=256.17 Aligned_cols=272 Identities=23% Similarity=0.399 Sum_probs=230.4
Q ss_pred HHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC
Q 016715 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI 186 (384)
Q Consensus 108 l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~ 186 (384)
+.-+.+++++.++|||+.|.++.++|+..++.-..+.|.|||+|.|.+|+.+.+.+. .+..||+|+++++-++...+..
T Consensus 17 i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa 96 (326)
T KOG0821|consen 17 IKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA 96 (326)
T ss_pred HHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC
Confidence 333445788899999999999999999999988889999999999999999999865 8999999999988877655443
Q ss_pred -CCeEEEEccccccchhhhhhhHHhhhccC-CCcceEeeccCccccHHHHHHhcccC----CCe----eEEEEEeeHHHH
Q 016715 187 -DQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANIPFNISTDVIKQLLPMG----DIF----SEVVLLLQEETA 256 (384)
Q Consensus 187 -~~v~~~~gD~~~~~~~~~~~~~~~~~~~~-~~~d~Vv~NlPy~i~~~il~~L~~~g----~~~----~~~~~~~qke~a 256 (384)
.+..++++|++.+...+++.+-....|.. .+...||+|+||+++++++.++++.- ..| ..+.+.+|+|+|
T Consensus 97 ~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVA 176 (326)
T KOG0821|consen 97 PGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVA 176 (326)
T ss_pred CcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHH
Confidence 38899999999998777554333322333 33467899999999999987766531 122 358899999999
Q ss_pred HHHhcCCCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCCceEEEEEEEcCCCCCCCCCChHHHHHHHHHHhcCCCc
Q 016715 257 LRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336 (384)
Q Consensus 257 ~rl~~a~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~~F~~rrk 336 (384)
+|++ ++.|.+..+++||+.|+++++..+|.++..+|.|.|.||.+||+|.|++.+.... ..+....++|+.|+.|.|
T Consensus 177 eRlC-aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~--~F~lvEkV~R~vF~~RQK 253 (326)
T KOG0821|consen 177 ERLC-APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQ--PFKLVEKVVRNVFQFRQK 253 (326)
T ss_pred HHhc-ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccC--CHHHHHHHHHHHHHHHHH
Confidence 9999 7889999999999999999999999999999999999999999999998865432 367888999999999999
Q ss_pred hHHHHHhhhcChHHH----HHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715 337 MLRKSLQHLCTSLEI----EKALGDVGLPATSRPEELTLDDFVKLHNLIV 382 (384)
Q Consensus 337 ~l~~~l~~~~~~~~~----~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~ 382 (384)
.+.+.|+.+++.+.- ..+|+.+.++++.|+.+|+.|||..|++..+
T Consensus 254 Y~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~r~~~L~iEQf~~LAE~Y~ 303 (326)
T KOG0821|consen 254 YCHRGLRTLFPEEQRLESTGRLLELADIDPTLRPRQLSIEQFKSLAEVYR 303 (326)
T ss_pred HHHccccccCCHHHHHHHHHHHHHHhcCCCccCceeeeHHHHHHHHHHHH
Confidence 999999999976542 5679999999999999999999999998654
No 9
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=2.2e-34 Score=255.11 Aligned_cols=168 Identities=39% Similarity=0.606 Sum_probs=155.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~ 209 (384)
+++|++.+++.++++|||||||+|.+|..+++++.+|+++|+|+.+++.+++++...++++++++|+.++++.+
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~------ 75 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK------ 75 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc------
Confidence 56788888888889999999999999999999988999999999999999999876568999999999987643
Q ss_pred hhhccCCCcceEeeccCccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeeecccceEEEEeC
Q 016715 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289 (384)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~~~~~~~~~~v~ 289 (384)
..+|.|++|+||+++++++.++.........+++|+|+|+++|++ ++||++.|+++|+++|++++++.+++|+
T Consensus 76 ------~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~~~~v~ 148 (169)
T smart00650 76 ------LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKILFKVP 148 (169)
T ss_pred ------cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEEEEEEC
Confidence 358999999999999999999998776778999999999999999 8999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEEEEcC
Q 016715 290 RTNFFPQPKVDAAVVTFKLKQ 310 (384)
Q Consensus 290 ~~~F~P~PkV~s~vv~l~~~~ 310 (384)
+++|+|+|||||+||+|+|++
T Consensus 149 ~~~F~P~PkV~s~~~~~~~~~ 169 (169)
T smart00650 149 PEAFRPPPKVDSAVVRLERRP 169 (169)
T ss_pred hhhCCCCCCceEEEEEEEECc
Confidence 999999999999999999863
No 10
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.3e-17 Score=146.57 Aligned_cols=143 Identities=20% Similarity=0.303 Sum_probs=119.6
Q ss_pred HHHHHHhhC-CCChHHHHHHHHhCCC---CCc-------------ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 016715 89 ACIVCARSQ-DDDYHATIKALNSKGR---FPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151 (384)
Q Consensus 89 ~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~-------------~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G 151 (384)
+|+..++|. +..+.+++++|...++ .|. ...|| +++.|.+..+|++.+.++++++|||||||
T Consensus 4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG 82 (209)
T COG2518 4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG 82 (209)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence 677788875 7777999999877543 221 12466 99999999999999999999999999999
Q ss_pred chHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCcc
Q 016715 152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN 228 (384)
Q Consensus 152 ~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~ 228 (384)
+||.++.|++...+|+++|+++.+++.|++++... .||.+++||....-.. ..+||.|+.+ -.-.
T Consensus 83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~------------~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE------------EAPYDRIIVTAAAPE 150 (209)
T ss_pred chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC------------CCCcCEEEEeeccCC
Confidence 99999999999889999999999999999998754 4899999999886332 2689998755 3447
Q ss_pred ccHHHHHHhcccCCCe
Q 016715 229 ISTDVIKQLLPMGDIF 244 (384)
Q Consensus 229 i~~~il~~L~~~g~~~ 244 (384)
++..++++|+++|+++
T Consensus 151 vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 151 VPEALLDQLKPGGRLV 166 (209)
T ss_pred CCHHHHHhcccCCEEE
Confidence 7789999999999874
No 11
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.68 E-value=4.2e-16 Score=142.28 Aligned_cols=145 Identities=23% Similarity=0.353 Sum_probs=110.4
Q ss_pred HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCccc-------------CCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 016715 87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRKS-------------LGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (384)
Q Consensus 87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~~-------------~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG 149 (384)
++.||+++++.+ ..+.++.++|...++ .|... .|+ +++.|.+..+|++.+.+++|++|||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~-~is~P~~~a~~l~~L~l~pg~~VLeIG 80 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQ-TISAPSMVARMLEALDLKPGDRVLEIG 80 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTE-EE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeeccee-echHHHHHHHHHHHHhcCCCCEEEEec
Confidence 678999999875 899999999987543 33321 244 788999999999999999999999999
Q ss_pred CcchHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715 150 PGTGSLTNVLLNA-GA--TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 150 ~G~G~lt~~La~~-~~--~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
||+|++|+.|+.. +. .|++||+++.+++.|++++.. ..|+.++++|....... ..+||.|+.+
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------~apfD~I~v~ 148 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------EAPFDRIIVT 148 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------G-SEEEEEES
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------CCCcCEEEEe
Confidence 9999999999997 43 699999999999999999874 34999999998775332 2679999876
Q ss_pred cCc-cccHHHHHHhcccCCCe
Q 016715 225 IPF-NISTDVIKQLLPMGDIF 244 (384)
Q Consensus 225 lPy-~i~~~il~~L~~~g~~~ 244 (384)
... .++..++.+|+++|+++
T Consensus 149 ~a~~~ip~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 149 AAVPEIPEALLEQLKPGGRLV 169 (209)
T ss_dssp SBBSS--HHHHHTEEEEEEEE
T ss_pred eccchHHHHHHHhcCCCcEEE
Confidence 433 77789999999988764
No 12
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=4.5e-15 Score=136.25 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=116.8
Q ss_pred HHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 016715 86 AASACIVCARSQ-DDDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (384)
Q Consensus 86 ~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLEI 148 (384)
.++.||+.++|. +.++.++.++|...++ .|.. ..|| .++.|.+...+++.+.+.++++||||
T Consensus 5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdI 83 (212)
T PRK13942 5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEI 83 (212)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEE
Confidence 457899999997 5999999999986543 2221 2355 67899999999999999999999999
Q ss_pred cCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715 149 GPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (384)
Q Consensus 149 G~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (384)
|||+|+++..+++. + .+|+++|+++++++.+++++... ++++++++|+.+.... ...||+|+.
T Consensus 84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~------------~~~fD~I~~ 151 (212)
T PRK13942 84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE------------NAPYDRIYV 151 (212)
T ss_pred CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc------------CCCcCEEEE
Confidence 99999999999886 2 59999999999999999988643 4899999999875432 257999987
Q ss_pred ccC-ccccHHHHHHhcccCCCe
Q 016715 224 NIP-FNISTDVIKQLLPMGDIF 244 (384)
Q Consensus 224 NlP-y~i~~~il~~L~~~g~~~ 244 (384)
+.. -++...+..+|+++|.++
T Consensus 152 ~~~~~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 152 TAAGPDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred CCCcccchHHHHHhhCCCcEEE
Confidence 643 255667788888888654
No 13
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.63 E-value=7.1e-15 Score=135.19 Aligned_cols=148 Identities=21% Similarity=0.247 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc-----------cCC-CcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 016715 85 GAASACIVCARSQD-DDYHATIKALNSKGR---FPRK-----------SLG-QHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (384)
Q Consensus 85 ~~r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~-----------~~g-q~fl~~~~~~~~il~~l~~~~~~~VLEI 148 (384)
..|+.||+.+++++ +++..+.++|...++ .+.. .+| .+.+..+.+.+.+++.+.+.++++||||
T Consensus 5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDi 84 (215)
T TIGR00080 5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEI 84 (215)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEE
Confidence 45788999999975 888999999886543 2221 122 2367789999999999999999999999
Q ss_pred cCcchHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715 149 GPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (384)
Q Consensus 149 G~G~G~lt~~La~~~~---~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (384)
|||+|+++..+++... +|+++|+++.+++.|++++... ++++++++|+.+.... ...||.|+.
T Consensus 85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------~~~fD~Ii~ 152 (215)
T TIGR00080 85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------LAPYDRIYV 152 (215)
T ss_pred CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------cCCCCEEEE
Confidence 9999999999998743 5999999999999999988643 4899999999875322 257999987
Q ss_pred ccC-ccccHHHHHHhcccCCCe
Q 016715 224 NIP-FNISTDVIKQLLPMGDIF 244 (384)
Q Consensus 224 NlP-y~i~~~il~~L~~~g~~~ 244 (384)
+.+ .++...+...|.++|.++
T Consensus 153 ~~~~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 153 TAAGPKIPEALIDQLKEGGILV 174 (215)
T ss_pred cCCcccccHHHHHhcCcCcEEE
Confidence 754 466777788888877654
No 14
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=2.1e-14 Score=131.10 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=114.0
Q ss_pred HHHHHHHHhhCC-CChHHHHHHHHhCCC---CCcc-------------cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 016715 87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (384)
Q Consensus 87 r~~mv~~~ir~~-~~~~~~~~~l~~~~~---~~~~-------------~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG 149 (384)
|+.||+.+.+.+ .++.++.++|.+.++ .|.. ..|+ .+..+.+.+.+++.+.+.++++|||||
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG 80 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG 80 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence 567999888874 788999999877543 2322 1244 566788999999999988999999999
Q ss_pred CcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715 150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (384)
Q Consensus 150 ~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (384)
||+|+.+..+++. +.+|+++|+++.+++.+++++... ++++++++|+.+.... ...||.|++
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------~~~fD~Ii~ 148 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------HAPFDAIIV 148 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------CCCccEEEE
Confidence 9999999999876 358999999999999999887643 2589999999875322 257999998
Q ss_pred ccCc-cccHHHHHHhcccCCCe
Q 016715 224 NIPF-NISTDVIKQLLPMGDIF 244 (384)
Q Consensus 224 NlPy-~i~~~il~~L~~~g~~~ 244 (384)
+... ++...+..+|.++|.++
T Consensus 149 ~~~~~~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 149 TAAASTIPSALVRQLKDGGVLV 170 (205)
T ss_pred ccCcchhhHHHHHhcCcCcEEE
Confidence 8664 66677788888887653
No 15
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2e-13 Score=120.16 Aligned_cols=160 Identities=23% Similarity=0.342 Sum_probs=121.0
Q ss_pred CCCcccCCCcccCCHHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC-CC
Q 016715 113 RFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS-ID 187 (384)
Q Consensus 113 ~~~~~~~gq~fl~~~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~-~~ 187 (384)
..|+.++.| |.+++.++..|+..+. .-.|.+|+|+|||||.++...+-.|+ .|+|||+|+++++.++++... .+
T Consensus 15 ~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g 93 (198)
T COG2263 15 PNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG 93 (198)
T ss_pred CCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCC
Confidence 377888899 9999999999888663 33677999999999999999999986 899999999999999999874 35
Q ss_pred CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc-----cHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcC
Q 016715 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-----STDVIKQLLPMGDIFSEVVLLLQEETALRLVEP 262 (384)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-----~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a 262 (384)
++.++.+|+.++. ..+|.++.|+||.. -.+.+..-++-...+-.++..-.+++..+.. +
T Consensus 94 ~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~-~ 157 (198)
T COG2263 94 DVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFA-A 157 (198)
T ss_pred ceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHH-H
Confidence 8999999999875 57889999999943 3466666666666665566555566777766 2
Q ss_pred CCCCCCcccceeeeeecccceEEEEeCCCCCCCCCCC
Q 016715 263 SLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299 (384)
Q Consensus 263 ~pg~~~y~~lsvl~q~~~~~~~~~~v~~~~F~P~PkV 299 (384)
.-|. ..... -...|.+|+...+..-+|
T Consensus 158 ~~G~----~v~~~------~~~~~~iP~~y~fH~k~~ 184 (198)
T COG2263 158 DLGG----TVTHI------ERARFPIPRTYPFHRKRV 184 (198)
T ss_pred hcCC----eEEEE------EEEEEecCccCchhhhee
Confidence 2221 11111 145677888887766444
No 16
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.55 E-value=1.5e-13 Score=126.06 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHhhC-CCChHHHHHHHHhCCC---CCccc-----------CC-CcccCCHHHHHHHHHHhcCCCCCEE
Q 016715 82 VQKGAASACIVCARSQ-DDDYHATIKALNSKGR---FPRKS-----------LG-QHYMLNSEINDQLAAAAAVQEGDIV 145 (384)
Q Consensus 82 ~~~~~r~~mv~~~ir~-~~~~~~~~~~l~~~~~---~~~~~-----------~g-q~fl~~~~~~~~il~~l~~~~~~~V 145 (384)
...+.|++||+ ++++ +...+.+.++|...++ .|..+ ++ ..+++.+.+..++++.+.+.++.+|
T Consensus 4 ~~~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~V 82 (212)
T PRK00312 4 MESERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRV 82 (212)
T ss_pred hHHHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEE
Confidence 34577999999 7775 7888899999887643 23211 11 1257889999999999999999999
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (384)
Q Consensus 146 LEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (384)
||||||+|+++..+++.+.+|+++|+++.+++.+++++... .+++++++|+.+.... .+.||.|+.
T Consensus 83 LeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------~~~fD~I~~ 150 (212)
T PRK00312 83 LEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA------------YAPFDRILV 150 (212)
T ss_pred EEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc------------CCCcCEEEE
Confidence 99999999999988888779999999999999999987643 4799999998653211 257999988
Q ss_pred ccCc-cccHHHHHHhcccCCCe
Q 016715 224 NIPF-NISTDVIKQLLPMGDIF 244 (384)
Q Consensus 224 NlPy-~i~~~il~~L~~~g~~~ 244 (384)
+.+. ++...+...|.++|.++
T Consensus 151 ~~~~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 151 TAAAPEIPRALLEQLKEGGILV 172 (212)
T ss_pred ccCchhhhHHHHHhcCCCcEEE
Confidence 7544 45556666777766543
No 17
>PHA03412 putative methyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=119.71 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=83.8
Q ss_pred HHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-----CCcEEEEeCCHHHHHHHHHH
Q 016715 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 108 l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~avE~d~~~~~~a~~~ 182 (384)
+.+.....++..|| |.++..++..++... ..+.+|||+|||+|.++..+++. ..+|++||+|+.+++.|+++
T Consensus 19 ~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 19 FHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred cccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 33434466778899 999999988876432 24679999999999999999874 35899999999999999987
Q ss_pred hcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 183 ~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
. +++.++++|+...++. +.||+||+|+||...
T Consensus 96 ~---~~~~~~~~D~~~~~~~-------------~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 96 V---PEATWINADALTTEFD-------------TLFDMAISNPPFGKI 127 (241)
T ss_pred c---cCCEEEEcchhccccc-------------CCccEEEECCCCCCc
Confidence 6 3688999999875432 479999999999764
No 18
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=1.8e-11 Score=118.81 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=107.3
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHhCCC---CCccc-----C----------CC--cccCCHHHHHHHHHHhcCCCCCEEE
Q 016715 87 ASACIVCARSQDDDYHATIKALNSKGR---FPRKS-----L----------GQ--HYMLNSEINDQLAAAAAVQEGDIVL 146 (384)
Q Consensus 87 r~~mv~~~ir~~~~~~~~~~~l~~~~~---~~~~~-----~----------gq--~fl~~~~~~~~il~~l~~~~~~~VL 146 (384)
|++||+.....+.++ ++.++|.+.++ .|... + |. .+.+++.+...+++.+++.++++||
T Consensus 7 ~~~lv~~l~~~gv~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VL 85 (322)
T PRK13943 7 REKLFWILKKYGISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVL 85 (322)
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEE
Confidence 567888443457776 88888876543 22211 1 21 3667899999999999998999999
Q ss_pred EEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715 147 EIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (384)
Q Consensus 147 EIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (384)
|||||+|+++..+++.. ..|+++|+++.+++.|++++... +++.++++|+.+..... ..||.|
T Consensus 86 DIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~------------~~fD~I 153 (322)
T PRK13943 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF------------APYDVI 153 (322)
T ss_pred EEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc------------CCccEE
Confidence 99999999999999863 36999999999999999887643 47999999987654321 468999
Q ss_pred eeccCc-cccHHHHHHhcccCCCe
Q 016715 222 VANIPF-NISTDVIKQLLPMGDIF 244 (384)
Q Consensus 222 v~NlPy-~i~~~il~~L~~~g~~~ 244 (384)
+.+... ++...+..+|.++|.++
T Consensus 154 i~~~g~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 154 FVTVGVDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred EECCchHHhHHHHHHhcCCCCEEE
Confidence 875332 34456677787777653
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.35 E-value=5.6e-12 Score=103.08 Aligned_cols=73 Identities=30% Similarity=0.426 Sum_probs=61.2
Q ss_pred CCCEEEEEcCcchHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhc---CCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~--~~~~V~avE~d~~~~~~a~~~~~---~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
|+.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.++++.. ..++++++++|+ ..... ..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----------~~ 68 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----------FL 68 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----------TS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----------cC
Confidence 578999999999999999999 58899999999999999999982 246999999999 32221 22
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+.||.|+++.
T Consensus 69 ~~~D~v~~~~ 78 (112)
T PF12847_consen 69 EPFDLVICSG 78 (112)
T ss_dssp SCEEEEEECS
T ss_pred CCCCEEEECC
Confidence 5799999877
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=7.5e-12 Score=115.91 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (384)
+....+.+++++...+|.+|||||||||.++..+++.. ++|+++|+++.|++.++++.... .++++++||++++|+
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 34556677777777789999999999999999999984 69999999999999999998752 259999999999999
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCccccHHHHHHh
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L 237 (384)
++ +.||.|....-....+++-..|
T Consensus 116 ~D------------~sFD~vt~~fglrnv~d~~~aL 139 (238)
T COG2226 116 PD------------NSFDAVTISFGLRNVTDIDKAL 139 (238)
T ss_pred CC------------CccCEEEeeehhhcCCCHHHHH
Confidence 87 7899998765554444443333
No 21
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=8.5e-12 Score=115.67 Aligned_cols=87 Identities=20% Similarity=0.345 Sum_probs=71.9
Q ss_pred HHhcCCCCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHH
Q 016715 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLF 209 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~ 209 (384)
++.......+|||+|||+|.++..++++ . +++++||+++++++.|+++++.+ ++++++++|+.++....
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------ 111 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------ 111 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc------
Confidence 3444445789999999999999999998 4 79999999999999999998754 48999999999876442
Q ss_pred hhhccCCCcceEeeccCccccH
Q 016715 210 ERRKSSSGFAKVVANIPFNIST 231 (384)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i~~ 231 (384)
....||.||+|+||+-..
T Consensus 112 ----~~~~fD~Ii~NPPyf~~~ 129 (248)
T COG4123 112 ----VFASFDLIICNPPYFKQG 129 (248)
T ss_pred ----cccccCEEEeCCCCCCCc
Confidence 224699999999996543
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=2.8e-11 Score=118.88 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcC-----CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715 127 SEINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (384)
Q Consensus 127 ~~~~~~il~~l~~-----~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~ 197 (384)
.++++.+++++.+ .++++|||||||+|.++..+++. +++|+|||+++.+++.++++.... ++++++.+|+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 4567778888876 67889999999999999999986 789999999999999999876532 47999999999
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCc-cc------cHHHHHHhcccCCCe
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NI------STDVIKQLLPMGDIF 244 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy-~i------~~~il~~L~~~g~~~ 244 (384)
++++++ +.||+|+++..+ ++ ..++.+.|+++|.++
T Consensus 179 ~~~~~~------------~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQPFED------------GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCCCCC------------CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEE
Confidence 987654 689999986543 22 224445666666543
No 23
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.27 E-value=4.1e-11 Score=108.74 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715 125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (384)
Q Consensus 125 ~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~ 200 (384)
+...+.+.+++++.. .++.+|||+|||+|.++..++.+ ..+|+++|+++.+++.+++++..+ .+++++++|+.+..
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 345666777777643 46789999999999999976655 459999999999999999987643 37999999987632
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCcc--ccHHHHHHhcccCCCeeEEEEEee
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIFSEVVLLLQ 252 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~--i~~~il~~L~~~g~~~~~~~~~~q 252 (384)
.. ....||+|+.|+||. ....++..|...+.+-...++.+.
T Consensus 116 ~~-----------~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 116 AQ-----------PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred hh-----------cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 11 124699999999984 334566666654433333344443
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.25 E-value=4e-11 Score=113.66 Aligned_cols=119 Identities=20% Similarity=0.332 Sum_probs=92.7
Q ss_pred CCcccCCCcccCCH--HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeE
Q 016715 114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK 190 (384)
Q Consensus 114 ~~~~~~gq~fl~~~--~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~ 190 (384)
+-..-||.+|+... .....+++.+.+.++.+|||||||+|..+..++.. +++|+++|+++.+++.++++....+++.
T Consensus 23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~ 102 (263)
T PTZ00098 23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE 102 (263)
T ss_pred hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence 44566888888774 44788999999999999999999999999999875 6799999999999999999876556899
Q ss_pred EEEccccccchhhhhhhHHhhhccCCCcceEeeccC-cccc--------HHHHHHhcccCCCe
Q 016715 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS--------TDVIKQLLPMGDIF 244 (384)
Q Consensus 191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP-y~i~--------~~il~~L~~~g~~~ 244 (384)
++.+|+.+.++++ +.||+|+++.. +++. ..+...|+++|.++
T Consensus 103 ~~~~D~~~~~~~~------------~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 103 FEANDILKKDFPE------------NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred EEECCcccCCCCC------------CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999998876643 67999998532 2332 23344566666543
No 25
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.25 E-value=1.2e-11 Score=115.09 Aligned_cols=105 Identities=20% Similarity=0.363 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (384)
....+.+++.+...++.+|||+|||||.++..+++. + .+|+++|+++.|++.++++.... .+++++++|++++++
T Consensus 33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 344556777777888999999999999999999986 3 58999999999999999987643 489999999999998
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCcc-------ccHHHHHHhcccCCC
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPFN-------ISTDVIKQLLPMGDI 243 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~-------i~~~il~~L~~~g~~ 243 (384)
++ +.||.|++..-++ ...++.+.|+++|.+
T Consensus 113 ~d------------~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 113 PD------------NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL 149 (233)
T ss_dssp -T------------T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred CC------------CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 76 6899998654332 223555566666654
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=3e-11 Score=107.06 Aligned_cols=88 Identities=23% Similarity=0.389 Sum_probs=68.2
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhh
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~ 206 (384)
..|++.+...++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..++ +++++++|..+...
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----- 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----- 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC-----
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc-----
Confidence 3455555544678999999999999999999855 59999999999999999987543 49999999876432
Q ss_pred hHHhhhccCCCcceEeeccCccccH
Q 016715 207 SLFERRKSSSGFAKVVANIPFNIST 231 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~~ 231 (384)
...||.|++|+|++...
T Consensus 96 --------~~~fD~Iv~NPP~~~~~ 112 (170)
T PF05175_consen 96 --------DGKFDLIVSNPPFHAGG 112 (170)
T ss_dssp --------TTCEEEEEE---SBTTS
T ss_pred --------ccceeEEEEccchhccc
Confidence 26899999999996553
No 27
>PHA03411 putative methyltransferase; Provisional
Probab=99.25 E-value=3e-11 Score=113.59 Aligned_cols=94 Identities=15% Similarity=0.289 Sum_probs=77.2
Q ss_pred cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcc
Q 016715 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195 (384)
Q Consensus 118 ~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD 195 (384)
..|| |.+++.++..++ +....+.+|||+|||+|.++..++.+ +.+|+++|+++.+++.+++++ ++++++++|
T Consensus 44 ~~G~-FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D 117 (279)
T PHA03411 44 GSGA-FFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSD 117 (279)
T ss_pred Ccee-EcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECc
Confidence 3688 999999986654 23345679999999999999988876 469999999999999999875 478999999
Q ss_pred ccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
+.++.. ...||.||+|+||...
T Consensus 118 ~~e~~~-------------~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 118 VFEFES-------------NEKFDVVISNPPFGKI 139 (279)
T ss_pred hhhhcc-------------cCCCcEEEEcCCcccc
Confidence 987642 1579999999999763
No 28
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.25 E-value=8e-11 Score=105.05 Aligned_cols=82 Identities=29% Similarity=0.353 Sum_probs=67.6
Q ss_pred HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhh
Q 016715 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
+.+.+...++++|||+|||+|.++..++..+.+|+++|+++.+++.+++++..++ +++++.+|+.+..
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------- 79 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----------- 79 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----------
Confidence 3344444566899999999999999999988899999999999999999876433 6888999987642
Q ss_pred hccCCCcceEeeccCcc
Q 016715 212 RKSSSGFAKVVANIPFN 228 (384)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~ 228 (384)
.+.||.|++|+||.
T Consensus 80 ---~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 80 ---RGKFDVILFNPPYL 93 (179)
T ss_pred ---CCcccEEEECCCCC
Confidence 14799999999995
No 29
>PRK14967 putative methyltransferase; Provisional
Probab=99.24 E-value=4.7e-11 Score=110.41 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhh
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~ 203 (384)
+..++..++..+...++++|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+ ++.++++|+.+.. .
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~-~- 98 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV-E- 98 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc-c-
Confidence 445566666666677889999999999999999998865 99999999999999998876432 6888899987631 1
Q ss_pred hhhhHHhhhccCCCcceEeeccCcccc
Q 016715 204 HMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
.+.||.|++|+||...
T Consensus 99 -----------~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 99 -----------FRPFDVVVSNPPYVPA 114 (223)
T ss_pred -----------CCCeeEEEECCCCCCC
Confidence 2579999999999654
No 30
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.23 E-value=4e-11 Score=112.65 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~ 205 (384)
...+.+.+++.+...++.+|||+|||+|.++..++..+.+|+++|+++.|++.++++.. ...++++|+.++++.+
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~~-- 101 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLAT-- 101 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCCC--
Confidence 34567777888876667899999999999999999889999999999999999998753 3568899998887643
Q ss_pred hhHHhhhccCCCcceEeeccCcccc
Q 016715 206 LSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
+.||.|++|.++++.
T Consensus 102 ----------~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 102 ----------ATFDLAWSNLAVQWC 116 (251)
T ss_pred ----------CcEEEEEECchhhhc
Confidence 579999999887654
No 31
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.21 E-value=7.2e-11 Score=115.52 Aligned_cols=96 Identities=24% Similarity=0.272 Sum_probs=83.4
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~ 200 (384)
...++.+...|++.+...+++.|||+|||+|.++..++..+.+++|+|+|+.|++.++.++... .++.++++|+.+++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 4467889999999888889999999999999999998888999999999999999999987643 35889999999887
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
+.+ +.+|.|++|+||...
T Consensus 244 ~~~------------~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 244 LSS------------ESVDAIATDPPYGRS 261 (329)
T ss_pred ccc------------CCCCEEEECCCCcCc
Confidence 543 579999999999653
No 32
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=7.5e-11 Score=112.17 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=91.4
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-C--e
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q--L 189 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~--v 189 (384)
.|.-.||+.+.-...+.-+.++.... ++.+|||+|||+|.|+.+.++.|+ +|+|+|+|+-+++.+++|...++ . +
T Consensus 136 DPGlAFGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 136 DPGLAFGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred ccccccCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh
Confidence 45557888777666666666665544 789999999999999999999988 59999999999999999987643 1 2
Q ss_pred EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc----cccHHHHHHhcccCCCeeEEEEEeeHH
Q 016715 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF----NISTDVIKQLLPMGDIFSEVVLLLQEE 254 (384)
Q Consensus 190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy----~i~~~il~~L~~~g~~~~~~~~~~qke 254 (384)
+....+..+.+ ...+||+||+|+=- ...+++...++++|.++...++--|.+
T Consensus 215 ~~~~~~~~~~~-------------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~ 270 (300)
T COG2264 215 QAKGFLLLEVP-------------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAE 270 (300)
T ss_pred hcccccchhhc-------------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHH
Confidence 22223333322 12589999999722 344566778888888777666655544
No 33
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.21 E-value=2.7e-11 Score=99.93 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=64.3
Q ss_pred CCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
|.+|||+|||+|.+...+++.+ .+++++|+|+..++.++.++... ++++++++|+.+..... ..+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----------~~~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----------PDGK 70 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----------TTT-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----------cCce
Confidence 5689999999999999999998 89999999999999999987643 47999999998875110 2378
Q ss_pred cceEeeccCcccc
Q 016715 218 FAKVVANIPFNIS 230 (384)
Q Consensus 218 ~d~Vv~NlPy~i~ 230 (384)
+|+|++|+||...
T Consensus 71 ~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 71 FDLIVTNPPYGPR 83 (117)
T ss_dssp EEEEEE--STTSB
T ss_pred eEEEEECCCCccc
Confidence 9999999999643
No 34
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.20 E-value=1.4e-10 Score=107.42 Aligned_cols=92 Identities=14% Similarity=0.271 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccc
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCH 200 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~ 200 (384)
.....+.+++.+.+.++++|||+|||+|..+..+++. +.+|+|+|+++.+++.++++... .++++++++|+.+++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 4555678888888888999999999999999999876 35899999999999999988753 248999999998876
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
+++ +.+|.|+++..++.
T Consensus 110 ~~~------------~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 110 FDD------------NSFDYVTIGFGLRN 126 (231)
T ss_pred CCC------------CCccEEEEeccccc
Confidence 543 57999998766543
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.20 E-value=8.5e-11 Score=106.49 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhH
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSL 208 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~ 208 (384)
...+++.+...++.+|||+|||+|.++..++++|.+|+|+|+++.+++.++++....+ ++++..+|+...+++
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------ 92 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN------ 92 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc------
Confidence 3455566666667899999999999999999999999999999999999988765322 467777777654432
Q ss_pred HhhhccCCCcceEeeccCccc
Q 016715 209 FERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy~i 229 (384)
+.+|.|+++.+++.
T Consensus 93 -------~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 93 -------EDYDFIFSTVVFMF 106 (195)
T ss_pred -------CCCCEEEEeccccc
Confidence 46999999987753
No 36
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.19 E-value=2e-10 Score=101.59 Aligned_cols=122 Identities=25% Similarity=0.305 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccccc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKC 199 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~ 199 (384)
++.+++..-.+..|.+.+++.++|||||||.+|..++.. ..+|+|+|.|+++++..++|.+. .+|++++.||+.+.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 688899999999999999999999999999999999954 56999999999999999998864 46999999999886
Q ss_pred chhhhhhhHHhhhccCCCcceEeeccCc---cccHHHHHHhcccCCCeeEEEEEeeHHHHHHHh
Q 016715 200 HIRSHMLSLFERRKSSSGFAKVVANIPF---NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy---~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~ 260 (384)
... .+.+|.||-+=-- .+......+|.++|+++..++ +-|....++
T Consensus 97 L~~------------~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~ 145 (187)
T COG2242 97 LPD------------LPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI---TLETLAKAL 145 (187)
T ss_pred hcC------------CCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee---cHHHHHHHH
Confidence 432 1468888754222 223344556777787765444 446666655
No 37
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.19 E-value=9.6e-11 Score=115.93 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccccchh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIR 202 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~~~~~ 202 (384)
.+.+++.+....+.+|||+|||+|.++..++++ +.+|+++|+|+.+++.++++++.+ .+++++.+|+.+..
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-- 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-- 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC--
Confidence 455777777655679999999999999999987 469999999999999999987533 26788888886532
Q ss_pred hhhhhHHhhhccCCCcceEeeccCccc
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
....||.|++|+||+.
T Consensus 295 -----------~~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 295 -----------EPFRFNAVLCNPPFHQ 310 (378)
T ss_pred -----------CCCCEEEEEECcCccc
Confidence 1247999999999964
No 38
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.19 E-value=1.4e-10 Score=105.29 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=68.5
Q ss_pred HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHH
Q 016715 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF 209 (384)
Q Consensus 132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~ 209 (384)
.+++.+...++.+|||+|||+|..+..|+++|.+|+|+|+++.+++.++++.... .+++++.+|+.+.++.
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~------- 93 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD------- 93 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-------
Confidence 3445555566789999999999999999999999999999999999999876542 3688889998876542
Q ss_pred hhhccCCCcceEeeccCcc
Q 016715 210 ERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~ 228 (384)
+.||.|+++..++
T Consensus 94 ------~~fD~I~~~~~~~ 106 (197)
T PRK11207 94 ------GEYDFILSTVVLM 106 (197)
T ss_pred ------CCcCEEEEecchh
Confidence 4699999987654
No 39
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.19 E-value=2.6e-10 Score=113.29 Aligned_cols=79 Identities=18% Similarity=0.295 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.++++....+ +++++++|+.+..++. .+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-----------~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-----------EG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-----------CC
Confidence 35679999999999999999875 5699999999999999999986543 7999999987643221 14
Q ss_pred CcceEeeccCccc
Q 016715 217 GFAKVVANIPFNI 229 (384)
Q Consensus 217 ~~d~Vv~NlPy~i 229 (384)
.||.|++|+||.-
T Consensus 319 ~FDLIVSNPPYI~ 331 (423)
T PRK14966 319 KWDIIVSNPPYIE 331 (423)
T ss_pred CccEEEECCCCCC
Confidence 6999999999943
No 40
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.18 E-value=1.6e-10 Score=109.40 Aligned_cols=88 Identities=15% Similarity=0.257 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhc-----CCCCeEEEEccccccc
Q 016715 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFA-----SIDQLKVLQEDFVKCH 200 (384)
Q Consensus 129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~-----~~~~v~~~~gD~~~~~ 200 (384)
....+++.+.+.++++|||+|||+|.++..+++. + .+|+|+|++++|++.|+++.. ..++++++++|+.+++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3445566677778899999999999999999886 3 489999999999999987653 1248999999999988
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
+++ +.||.|+++..++
T Consensus 141 ~~~------------~sfD~V~~~~~l~ 156 (261)
T PLN02233 141 FDD------------CYFDAITMGYGLR 156 (261)
T ss_pred CCC------------CCEeEEEEecccc
Confidence 754 6799998876543
No 41
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.17 E-value=1.2e-10 Score=100.39 Aligned_cols=101 Identities=23% Similarity=0.426 Sum_probs=85.3
Q ss_pred CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhcCCCCeEE
Q 016715 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKV 191 (384)
Q Consensus 115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avE~d~~~~~~a~~~~~~~~~v~~ 191 (384)
..+.-|.-.-+++.++++|++.+++..|.-|||+|+|||.+|.+++++|. .++++|.|++++.++.+.+ +.+++
T Consensus 22 ~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~i 98 (194)
T COG3963 22 NPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNI 98 (194)
T ss_pred CCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccc
Confidence 34445654557888999999999999999999999999999999999854 7999999999999999887 57789
Q ss_pred EEccccccc--hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 192 LQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 192 ~~gD~~~~~--~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
++||+.++. +.+ +.++.+|.||+.+|+
T Consensus 99 i~gda~~l~~~l~e---------~~gq~~D~viS~lPl 127 (194)
T COG3963 99 INGDAFDLRTTLGE---------HKGQFFDSVISGLPL 127 (194)
T ss_pred cccchhhHHHHHhh---------cCCCeeeeEEecccc
Confidence 999999887 333 345789999998876
No 42
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=1.8e-10 Score=117.08 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH 204 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~ 204 (384)
..+++.+++++...++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..+ ++++++++|+.+......
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 345556666777778899999999999999999999889999999999999999987643 479999999976421100
Q ss_pred hhhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715 205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~ 239 (384)
...+.||+|+.|+||.-..+.+.++..
T Consensus 363 --------~~~~~fD~Vi~dPPr~g~~~~~~~l~~ 389 (443)
T PRK13168 363 --------WALGGFDKVLLDPPRAGAAEVMQALAK 389 (443)
T ss_pred --------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence 012468999999999877777777764
No 43
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.16 E-value=8.7e-11 Score=110.78 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.|++.++++ +++++++|+.++..
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~----- 86 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWKP----- 86 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCCC-----
Confidence 3456778888778899999999999999999988 67999999999999999763 68899999987632
Q ss_pred hHHhhhccCCCcceEeeccCccccH-------HHHHHhcccCCC
Q 016715 207 SLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI 243 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~~-------~il~~L~~~g~~ 243 (384)
.+.||.|++|..++..+ .+...|+++|.+
T Consensus 87 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l 122 (255)
T PRK14103 87 --------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWI 122 (255)
T ss_pred --------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEE
Confidence 15799999998775543 334456666654
No 44
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=6.6e-11 Score=106.02 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~ 207 (384)
...++..+.+....+|.|+|||+|..|..|+++ ++.++|+|.|++|++.|++++ +++++..+|+.++..+
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~p~----- 90 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWKPE----- 90 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcCCC-----
Confidence 446777777778889999999999999999998 789999999999999998876 6899999999987543
Q ss_pred HHhhhccCCCcceEeeccCccccH-------HHHHHhcccCCCeeEE
Q 016715 208 LFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDIFSEV 247 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i~~-------~il~~L~~~g~~~~~~ 247 (384)
...|++++|-.+++.+ .++.+|.++|.+-..|
T Consensus 91 --------~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 91 --------QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred --------CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 4789999998887765 3455666666554443
No 45
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.14 E-value=2e-10 Score=111.70 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=82.1
Q ss_pred ccCCHHHHHHHH----HHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc
Q 016715 123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF 196 (384)
Q Consensus 123 fl~~~~~~~~il----~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~ 196 (384)
|..++.+.+.++ +++...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...+ ++++++++|+
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~ 230 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS 230 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence 346666665555 4454445689999999999999999999999999999999999999987643 4799999999
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeeccCccc-cHHHHHHhccc
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLPM 240 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-~~~il~~L~~~ 240 (384)
.++... ..+.+|.|+.|+|+.- ...++..|...
T Consensus 231 ~~~~~~-----------~~~~~D~Vv~dPPr~G~~~~~~~~l~~~ 264 (315)
T PRK03522 231 TQFATA-----------QGEVPDLVLVNPPRRGIGKELCDYLSQM 264 (315)
T ss_pred HHHHHh-----------cCCCCeEEEECCCCCCccHHHHHHHHHc
Confidence 875421 1146899999999864 45555665543
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.13 E-value=9.4e-10 Score=98.83 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=82.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~ 198 (384)
-++.+.+.+.+++.+.+.++.+|||||||+|.++..+++.+ .+|+++|+++.+++.++++.... ++++++.+|+..
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 35677888888899988888999999999999999999873 58999999999999999887533 478999998742
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccCccccHH----HHHHhcccCCCee
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD----VIKQLLPMGDIFS 245 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~----il~~L~~~g~~~~ 245 (384)
.+ .+.+|.|+++.......+ ....|.++|.++.
T Consensus 93 -~~-------------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 93 -EL-------------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred -hc-------------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEE
Confidence 11 146899988754332233 3445666665543
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.13 E-value=2.3e-10 Score=99.22 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCcchHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~-~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
+++.+|||+|||+|.++..+++ . +.+++|+|+++.|++.|++++.. .++++++++|+.+++-. + .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~--------~ 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--L--------E 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--S--------S
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--c--------C
Confidence 3578999999999999999994 3 56999999999999999997653 34899999999996511 0 1
Q ss_pred CCCcceEeeccCcccc
Q 016715 215 SSGFAKVVANIPFNIS 230 (384)
Q Consensus 215 ~~~~d~Vv~NlPy~i~ 230 (384)
..||+|+++.+++..
T Consensus 72 -~~~D~I~~~~~l~~~ 86 (152)
T PF13847_consen 72 -EKFDIIISNGVLHHF 86 (152)
T ss_dssp -TTEEEEEEESTGGGT
T ss_pred -CCeeEEEEcCchhhc
Confidence 479999998776443
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.13 E-value=8.2e-10 Score=91.49 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (384)
...+...+++.+.+.++++|||+|||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++.+|+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 4566777888888878889999999999999999987 458999999999999999887543 478999999875321
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCccccH----HHHHHhcccCCC
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIKQLLPMGDI 243 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~----~il~~L~~~g~~ 243 (384)
. ..+.+|.|+...+..... .+.+.|+++|.+
T Consensus 84 ~-----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l 118 (124)
T TIGR02469 84 D-----------SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI 118 (124)
T ss_pred h-----------hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence 1 125789998865443322 333445555543
No 49
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.12 E-value=2.3e-10 Score=89.88 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=59.9
Q ss_pred EEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715 146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 146 LEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
||+|||+|..+..+++. +.+|+++|+++.+++.++++... .++.++++|+.++++++ +.||.|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~------------~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFPD------------NSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-T------------T-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCcccc------------ccccccccc
Confidence 89999999999999999 88999999999999999998754 46779999999998865 789999998
Q ss_pred cCcccc
Q 016715 225 IPFNIS 230 (384)
Q Consensus 225 lPy~i~ 230 (384)
--++..
T Consensus 68 ~~~~~~ 73 (95)
T PF08241_consen 68 SVLHHL 73 (95)
T ss_dssp SHGGGS
T ss_pred cceeec
Confidence 666544
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.12 E-value=3e-10 Score=102.13 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
++.+|||||||+|..+..++.. +++|+++|+++.+++.++++.+.. ++++++++|+.+++. + +
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~------------~ 111 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-E------------E 111 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-C------------C
Confidence 4789999999999999999874 579999999999999999987643 369999999988654 2 5
Q ss_pred CcceEeeccCc---cccHHHHHHhcccCCC
Q 016715 217 GFAKVVANIPF---NISTDVIKQLLPMGDI 243 (384)
Q Consensus 217 ~~d~Vv~NlPy---~i~~~il~~L~~~g~~ 243 (384)
.||.|++|.-. .+...+...|.++|.+
T Consensus 112 ~fDlV~~~~~~~~~~~l~~~~~~LkpGG~l 141 (187)
T PRK00107 112 KFDVVTSRAVASLSDLVELCLPLLKPGGRF 141 (187)
T ss_pred CccEEEEccccCHHHHHHHHHHhcCCCeEE
Confidence 79999987411 2223444566666654
No 51
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.11 E-value=1.6e-10 Score=110.76 Aligned_cols=128 Identities=27% Similarity=0.290 Sum_probs=84.9
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---Ce
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL 189 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v 189 (384)
.|...||....-..++.-.+++.+ ..++++|||+|||||.|+...++.|+ +|+|+|+|+.+++.+++|...++ ++
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~ 213 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI 213 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE
T ss_pred CCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE
Confidence 556677765554445555555555 34678999999999999999999988 79999999999999999987543 44
Q ss_pred EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccH----HHHHHhcccCCCeeEEEEEeeHHHHHH
Q 016715 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST----DVIKQLLPMGDIFSEVVLLLQEETALR 258 (384)
Q Consensus 190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~----~il~~L~~~g~~~~~~~~~~qke~a~r 258 (384)
.+. ...+. ....||+|++|+-..+.. ++...+.++|.++...++.-|.+....
T Consensus 214 ~v~--~~~~~--------------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~ 270 (295)
T PF06325_consen 214 EVS--LSEDL--------------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIE 270 (295)
T ss_dssp EES--CTSCT--------------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHH
T ss_pred EEE--Eeccc--------------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHH
Confidence 332 11111 126899999998664443 334455667777666666555544333
No 52
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.10 E-value=4.1e-10 Score=106.16 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
..+.++..+.+.++++|||||||+|.++..+++. +.+|+|+|+++.|++.++++. +++.++.+|+.++..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~~----- 90 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQP----- 90 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccCC-----
Confidence 4567777777778899999999999999999987 569999999999999999875 478899999876542
Q ss_pred hHHhhhccCCCcceEeeccCcccc
Q 016715 207 SLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
.+.+|+|++|..+++.
T Consensus 91 --------~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 91 --------PQALDLIFANASLQWL 106 (258)
T ss_pred --------CCCccEEEEccChhhC
Confidence 1479999999877544
No 53
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=4.2e-10 Score=106.25 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~ 203 (384)
.-.+.+++.+.+++|++|||||||.|.+...+|+. +.+|+|+++|+++.+.+++++... .+++++..|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 34667888999999999999999999999999998 899999999999999999977532 38999999988864
Q ss_pred hhhhHHhhhccCCCcceEeec
Q 016715 204 HMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~N 224 (384)
+.||.|||-
T Consensus 136 ------------e~fDrIvSv 144 (283)
T COG2230 136 ------------EPFDRIVSV 144 (283)
T ss_pred ------------cccceeeeh
Confidence 459999873
No 54
>PRK14968 putative methyltransferase; Provisional
Probab=99.09 E-value=1.3e-09 Score=97.31 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEccccccchhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~--v~~~~gD~~~~~~~~~~ 205 (384)
...+++.+...++++|||+|||+|.++..++..+.+|+++|+++.+++.+++++...+ + +.++++|+.+.. .
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~--- 87 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-R--- 87 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-c---
Confidence 3445555555678899999999999999999999999999999999999988875322 2 889999986632 1
Q ss_pred hhHHhhhccCCCcceEeeccCccc
Q 016715 206 LSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
...+|.|++|+||..
T Consensus 88 ---------~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 88 ---------GDKFDVILFNPPYLP 102 (188)
T ss_pred ---------ccCceEEEECCCcCC
Confidence 137999999999865
No 55
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.09 E-value=2.9e-10 Score=104.10 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=78.3
Q ss_pred HHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHH
Q 016715 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180 (384)
Q Consensus 104 ~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~ 180 (384)
....+...+..+...|.+-...++--...|-+.+.. .+|.+|||||||-|.++..||+.|++|+|+|+++.+++.|+
T Consensus 19 ~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak 98 (243)
T COG2227 19 KFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK 98 (243)
T ss_pred HHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH
Confidence 344455555555555655444555444455554443 47889999999999999999999999999999999999999
Q ss_pred HHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715 181 ERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 181 ~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
......+ ++.+.+..++++.. .++.||+|++.
T Consensus 99 ~ha~e~gv~i~y~~~~~edl~~------------~~~~FDvV~cm 131 (243)
T COG2227 99 LHALESGVNIDYRQATVEDLAS------------AGGQFDVVTCM 131 (243)
T ss_pred HhhhhccccccchhhhHHHHHh------------cCCCccEEEEh
Confidence 8875433 45566666666543 23689999986
No 56
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=6.9e-10 Score=108.91 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=68.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhh
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~ 207 (384)
+.+++.+......+|||+|||+|.++..+++++ .+|+++|+|+.+++.+++++..++ ..+++.+|+....
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~------- 258 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI------- 258 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc-------
Confidence 556676665555689999999999999999874 489999999999999999887543 4567778875421
Q ss_pred HHhhhccCCCcceEeeccCccc
Q 016715 208 LFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
.+.||.||+|+||+.
T Consensus 259 -------~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 259 -------KGRFDMIISNPPFHD 273 (342)
T ss_pred -------CCCccEEEECCCccC
Confidence 257999999999974
No 57
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.08 E-value=6.1e-10 Score=99.72 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=60.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
++++|||||||+|.++..++.. +.+|+|+|.++.+++.++++.+.. ++++++++|+.++.. .+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-------------~~ 108 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-------------EE 108 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------------cC
Confidence 4789999999999999998876 358999999999999998876543 479999999988632 15
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
.||.|++|.
T Consensus 109 ~fD~I~s~~ 117 (181)
T TIGR00138 109 QFDVITSRA 117 (181)
T ss_pred CccEEEehh
Confidence 799999985
No 58
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5e-10 Score=106.08 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~ 205 (384)
.+-+++.+....+.+|||+|||.|.++..+++.. .+++.+|+|..+++.+++++..+. +..+...|..+--
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v----- 221 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV----- 221 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----
Confidence 4567888887767799999999999999999985 499999999999999999987542 4467777765531
Q ss_pred hhHHhhhccCCCcceEeeccCccccHHH
Q 016715 206 LSLFERRKSSSGFAKVVANIPFNISTDV 233 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i~~~i 233 (384)
.+.||.||+|+||+-..++
T Consensus 222 ---------~~kfd~IisNPPfh~G~~v 240 (300)
T COG2813 222 ---------EGKFDLIISNPPFHAGKAV 240 (300)
T ss_pred ---------cccccEEEeCCCccCCcch
Confidence 2479999999999765433
No 59
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.08 E-value=8e-10 Score=105.16 Aligned_cols=110 Identities=24% Similarity=0.345 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (384)
.+.++.+++.+++++|++|||||||.|.++..++++ |++|+||.+|+...+.+++++... +++++..+|..+++
T Consensus 48 ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 345677888889999999999999999999999998 999999999999999999988753 37999999987754
Q ss_pred hhhhhHHhhhccCCCcceEeeccCc-cc--------cHHHHHHhcccCCCeeEEEEEe
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIPF-NI--------STDVIKQLLPMGDIFSEVVLLL 251 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy-~i--------~~~il~~L~~~g~~~~~~~~~~ 251 (384)
..||.||+--.+ ++ ...+-..|+++|.++...+...
T Consensus 126 -------------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 -------------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp --------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -------------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 478999874222 21 2234456667776655544443
No 60
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.7e-10 Score=107.15 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=60.4
Q ss_pred EEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
+|||+|||||.++..++.... +|+|+|+|+.+++.|++|...+ .++.++++|..+-- .+.||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~--------------~~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL--------------RGKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc--------------CCcee
Confidence 799999999999999999854 9999999999999999998754 35666666655421 24899
Q ss_pred eEeeccCccccH
Q 016715 220 KVVANIPFNIST 231 (384)
Q Consensus 220 ~Vv~NlPy~i~~ 231 (384)
+||+|+||--.+
T Consensus 179 lIVsNPPYip~~ 190 (280)
T COG2890 179 LIVSNPPYIPAE 190 (280)
T ss_pred EEEeCCCCCCCc
Confidence 999999994443
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=5.2e-10 Score=105.51 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~ 206 (384)
.+.+++.+. ..+.+|||||||+|.++..+++.+.+|+++|+++.|++.|+++.... ++++++++|+.++...
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~---- 108 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH---- 108 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh----
Confidence 345666665 45679999999999999999999999999999999999999987643 4789999999886421
Q ss_pred hHHhhhccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715 207 SLFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI 243 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~ 243 (384)
..+.||+|+++..++.. ..+...|+++|.+
T Consensus 109 -------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 109 -------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL 145 (255)
T ss_pred -------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 12579999987654322 2334455555544
No 62
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.06 E-value=8.2e-10 Score=105.86 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=64.9
Q ss_pred hcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhh
Q 016715 137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+ ++++++++|+.+.. +
T Consensus 117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-~--------- 186 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-P--------- 186 (284)
T ss_pred hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-C---------
Confidence 33344579999999999999999987 469999999999999999988643 36999999986521 1
Q ss_pred hccCCCcceEeeccCccc
Q 016715 212 RKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i 229 (384)
...||.|++|+||.-
T Consensus 187 ---~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 187 ---GRKYDLIVSNPPYVD 201 (284)
T ss_pred ---CCCccEEEECCCCCC
Confidence 146999999999953
No 63
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.06 E-value=9.1e-10 Score=107.06 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++.+|||||||+|.++..+++.|++|+|||.++.+++.|+.+.... .+++++++|+.++++.+ +
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~------------~ 197 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG------------R 197 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc------------C
Confidence 35679999999999999999998999999999999999999876432 37999999998876532 5
Q ss_pred CcceEeeccCcc-c------cHHHHHHhcccCCCe
Q 016715 217 GFAKVVANIPFN-I------STDVIKQLLPMGDIF 244 (384)
Q Consensus 217 ~~d~Vv~NlPy~-i------~~~il~~L~~~g~~~ 244 (384)
.||+|++.-.++ + ...+...|+++|.++
T Consensus 198 ~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 198 KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEE
Confidence 799998754332 2 234445666666554
No 64
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.06 E-value=1.1e-09 Score=104.46 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcC-----CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~-----~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
..+.+|||||||+|.++..+++.. ..|+|+|+++.+++.|+++. +++.++.+|+.++++.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~~----------- 149 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFAD----------- 149 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCcC-----------
Confidence 355789999999999999998752 37999999999999998764 57899999999988654
Q ss_pred CCCcceEeeccCccccHHHHHHhcccCCCe
Q 016715 215 SSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (384)
Q Consensus 215 ~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~ 244 (384)
+.||+|+++..-....++.+.|+++|.++
T Consensus 150 -~sfD~I~~~~~~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 150 -QSLDAIIRIYAPCKAEELARVVKPGGIVI 178 (272)
T ss_pred -CceeEEEEecCCCCHHHHHhhccCCCEEE
Confidence 67999998764455567778888877654
No 65
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.06 E-value=1e-09 Score=103.31 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh
Q 016715 128 EINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH 204 (384)
Q Consensus 128 ~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~ 204 (384)
.+++.+++.+.. ..+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++..+ +++++++|+.+.....
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~- 149 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTA- 149 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchh-
Confidence 444555554432 23458999999999999999876 458999999999999999998654 3688999987632110
Q ss_pred hhhHHhhhccCCCcceEeeccCcccc
Q 016715 205 MLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
..+.||+||+|+||.-.
T Consensus 150 ---------~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 150 ---------LRGRVDILAANAPYVPT 166 (251)
T ss_pred ---------cCCCEeEEEECCCCCCc
Confidence 12469999999999643
No 66
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.8e-10 Score=95.81 Aligned_cols=103 Identities=22% Similarity=0.343 Sum_probs=86.1
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID- 187 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~- 187 (384)
+|+-.+.| |.+.|.++..|+..+. .-+|+.++|+|||+|.+....+-.+. .|+|+|+|++.++++..+.....
T Consensus 18 Kpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 18 KPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred ccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh
Confidence 67777788 9999999999988774 23688999999999999977776655 79999999999999999876543
Q ss_pred CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
++.++++|+++..+. .+.||.++-|+||..
T Consensus 97 qidlLqcdildle~~------------~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 97 QIDLLQCDILDLELK------------GGIFDTAVINPPFGT 126 (185)
T ss_pred hhheeeeeccchhcc------------CCeEeeEEecCCCCc
Confidence 778999999987654 278999999999943
No 67
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.05 E-value=8.7e-10 Score=97.95 Aligned_cols=112 Identities=24% Similarity=0.381 Sum_probs=87.7
Q ss_pred CChHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHH
Q 016715 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175 (384)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~ 175 (384)
....+.++.....+.+| +..++.+.+++++.. -.|.++||+.+|+|.++.+.+++|+ .++.||.|...
T Consensus 8 ~~kgr~L~~p~~~~~RP---------T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a 78 (187)
T COG0742 8 KYKGRKLKTPDGPGTRP---------TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKA 78 (187)
T ss_pred cccCCcccCCCCCCcCC---------CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHH
Confidence 33344444444445566 677899999999986 5889999999999999999999977 89999999999
Q ss_pred HHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 176 VGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 176 ~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
+..++++++.. ++.+++.+|+....... ...+.||+|+.++||+
T Consensus 79 ~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~---------~~~~~FDlVflDPPy~ 125 (187)
T COG0742 79 VKILKENLKALGLEGEARVLRNDALRALKQL---------GTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHHHHHHhCCccceEEEeecHHHHHHhc---------CCCCcccEEEeCCCCc
Confidence 99999998642 58999999998432111 0123599999999997
No 68
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=1.6e-09 Score=97.63 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=80.6
Q ss_pred ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~ 197 (384)
.-++..+.+.+++.+.. ..+.+|||++||+|.++.+++.+|+ +|++||.|+.+++.++++++.+ ++++++++|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 34677777778887742 3578999999999999999999987 8999999999999999987643 36899999996
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLP 239 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~ 239 (384)
+.... +. .....+|+|+.++||.. ..+++..+..
T Consensus 110 ~~l~~-----~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~~ 145 (189)
T TIGR00095 110 RALKF-----LA---KKPTFDNVIYLDPPFFNGALQALLELCEN 145 (189)
T ss_pred HHHHH-----hh---ccCCCceEEEECcCCCCCcHHHHHHHHHH
Confidence 64211 00 01124799999999943 3455554444
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.04 E-value=8.3e-10 Score=88.96 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=61.9
Q ss_pred EEEEcCcchHHHHHHHHcC-----CcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 145 VLEIG~G~G~lt~~La~~~-----~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
|||+|||+|..+..+++.. .+++++|+|+.|++.++++.... .+++++++|+.+++..+ +.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~------------~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD------------GKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS------------SSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC------------CCe
Confidence 7999999999999999874 79999999999999999987532 38999999999976543 689
Q ss_pred ceEee-cc-CccccHHHHHHh
Q 016715 219 AKVVA-NI-PFNISTDVIKQL 237 (384)
Q Consensus 219 d~Vv~-Nl-Py~i~~~il~~L 237 (384)
|+|++ +. ..+...+-+..+
T Consensus 69 D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHH
T ss_pred eEEEEcCCccCCCCHHHHHHH
Confidence 99998 33 224555444443
No 70
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.03 E-value=1.3e-09 Score=111.81 Aligned_cols=113 Identities=18% Similarity=0.278 Sum_probs=86.2
Q ss_pred CCCcccCCHHH--HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEc
Q 016715 119 LGQHYMLNSEI--NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQE 194 (384)
Q Consensus 119 ~gq~fl~~~~~--~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~g 194 (384)
||..|..++.+ .+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++.... .+++++++
T Consensus 242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 56666666554 567888888778889999999999999999886 779999999999999999876533 47999999
Q ss_pred cccccchhhhhhhHHhhhccCCCcceEeeccCcc-c------cHHHHHHhcccCCC
Q 016715 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN-I------STDVIKQLLPMGDI 243 (384)
Q Consensus 195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~-i------~~~il~~L~~~g~~ 243 (384)
|+.+.++++ +.||+|+++-.+. + ...+.+.|+++|.+
T Consensus 322 d~~~~~~~~------------~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l 365 (475)
T PLN02336 322 DCTKKTYPD------------NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKV 365 (475)
T ss_pred CcccCCCCC------------CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEE
Confidence 998876543 5799999864432 2 23444566666654
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=1.4e-09 Score=101.82 Aligned_cols=91 Identities=22% Similarity=0.363 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR 202 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~ 202 (384)
..+++.+++.+.. .+.+|||+|||+|.++..+++. +.+++|+|+++.+++.++.+.... ++++++++|+.+. +.
T Consensus 74 ~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~ 151 (251)
T TIGR03534 74 EELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-LP 151 (251)
T ss_pred HHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-Cc
Confidence 4455666666543 3468999999999999999987 569999999999999999887643 3799999998763 21
Q ss_pred hhhhhHHhhhccCCCcceEeeccCccccH
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIPFNIST 231 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~ 231 (384)
.+.||+|++|+||....
T Consensus 152 ------------~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 152 ------------GGKFDLIVSNPPYIPEA 168 (251)
T ss_pred ------------CCceeEEEECCCCCchh
Confidence 25799999999997544
No 72
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=2.2e-09 Score=102.05 Aligned_cols=90 Identities=22% Similarity=0.318 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhc-C-CCCeEEEEccccccchh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~-~-~~~v~~~~gD~~~~~~~ 202 (384)
+.+++.+++.....++.+|||+|||+|.++..++... .+|+++|+++.+++.+++++. . ..+++++++|+.+...
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~- 172 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP- 172 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-
Confidence 4455566655555677899999999999999999874 699999999999999999876 2 2479999999865321
Q ss_pred hhhhhHHhhhccCCCcceEeeccCccc
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
.+.||+|++|+||.-
T Consensus 173 ------------~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 173 ------------GGRFDLIVSNPPYIP 187 (275)
T ss_pred ------------CCceeEEEECCCcCC
Confidence 157999999999954
No 73
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.03 E-value=1.6e-09 Score=97.03 Aligned_cols=121 Identities=18% Similarity=0.383 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715 125 LNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~ 198 (384)
+..++.+.+++.+... ++.+|||+.||+|.++.+.+++|+ +|+.||.|+..+..++++++.. ++++++.+|+..
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 6778899999999864 788999999999999999999987 8999999999999999998743 268999999776
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccCcccc---HHHHHHhcccCCCeeEEEEEeeH
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMGDIFSEVVLLLQE 253 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~---~~il~~L~~~g~~~~~~~~~~qk 253 (384)
.-... . .....||+|+.+|||... .+++..+...+.+-....++++.
T Consensus 104 ~l~~~-----~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 104 FLLKL-----A---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHH-----H---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHhh-----c---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 43211 0 124689999999999765 44667776554444445555554
No 74
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=1.3e-09 Score=104.51 Aligned_cols=92 Identities=17% Similarity=0.295 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715 127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (384)
Q Consensus 127 ~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~ 200 (384)
..+++.+++.+... ++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.++++.... ++++++++|+.+.
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~- 177 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP- 177 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-
Confidence 34455555544322 2369999999999999999987 359999999999999999987643 2599999998763
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~ 231 (384)
+. ...||+|++|+||.-..
T Consensus 178 ~~------------~~~fDlIvsNPPyi~~~ 196 (284)
T TIGR00536 178 LA------------GQKIDIIVSNPPYIDEE 196 (284)
T ss_pred Cc------------CCCccEEEECCCCCCcc
Confidence 11 13799999999995543
No 75
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.02 E-value=1.3e-09 Score=108.52 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=82.2
Q ss_pred ccCCHHHHHHHHHHh----cCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc
Q 016715 123 YMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF 196 (384)
Q Consensus 123 fl~~~~~~~~il~~l----~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~ 196 (384)
|.++..+.+.+++.+ ...++.+|||+|||+|.++..++..+.+|+|||+|+.+++.++++...+ ++++++.+|+
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~ 290 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 457777777776543 3345679999999999999999998889999999999999999988643 3899999999
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeeccCcc-ccHHHHHHhcc
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLP 239 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~-i~~~il~~L~~ 239 (384)
.+.... ....+|+||.|+|+. ....++..+..
T Consensus 291 ~~~~~~-----------~~~~~D~vi~DPPr~G~~~~~l~~l~~ 323 (374)
T TIGR02085 291 AKFATA-----------QMSAPELVLVNPPRRGIGKELCDYLSQ 323 (374)
T ss_pred HHHHHh-----------cCCCCCEEEECCCCCCCcHHHHHHHHh
Confidence 765321 113589999999996 34556565544
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=2.4e-09 Score=97.15 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~ 197 (384)
++.+++....+..+.+.++++|||+|||+|.++..++.. +.+|+++|+++.+++.+++++... +++.++.+|+.
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 456777777788889899999999999999999998875 358999999999999999887543 47899999987
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCccc----cHHHHHHhcccCCCe
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI----STDVIKQLLPMGDIF 244 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i----~~~il~~L~~~g~~~ 244 (384)
+.... ..+.+|.|+.+..... ...+...|.++|.++
T Consensus 103 ~~l~~-----------~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 103 EILFT-----------INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred hhHhh-----------cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEE
Confidence 64211 1257899998654322 233344566666554
No 77
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.02 E-value=1.9e-09 Score=99.19 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=68.9
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchh
Q 016715 128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (384)
Q Consensus 128 ~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (384)
.+.+.+++++. ..++.+|||||||+|.++..++..+.+|+|+|+++.++..|++++... .++.+.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 45667777776 457889999999999999999999889999999999999999987532 37899999988754
Q ss_pred hhhhhHHhhhccCCCcceEeec
Q 016715 203 SHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
+.||.|++.
T Consensus 118 -------------~~fD~ii~~ 126 (219)
T TIGR02021 118 -------------GEFDIVVCM 126 (219)
T ss_pred -------------CCcCEEEEh
Confidence 468999874
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=2.6e-09 Score=96.67 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcccccc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~ 199 (384)
++.+.+...+++.+.+.++++|||+|||+|.++..++.. +.+|+++|+|+.+++.+++++... ++++++.+|+.+.
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 566777778899998888999999999999999999865 469999999999999999987543 4799999998652
Q ss_pred chhhhhhhHHhhhccCCCcceEeeccC--c-cccHHHHHHhcccCCCeeE
Q 016715 200 HIRSHMLSLFERRKSSSGFAKVVANIP--F-NISTDVIKQLLPMGDIFSE 246 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y-~i~~~il~~L~~~g~~~~~ 246 (384)
. .. ....+|.++.+.. + .+...+...|.++|.++..
T Consensus 103 ~-~~----------~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 103 L-AQ----------LAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred H-hh----------CCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 1 11 0123455544322 1 2334455567777665443
No 79
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.00 E-value=2e-09 Score=101.05 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhh
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++... .+++++++|+.++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----------- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence 46789999999999999988872 569999999999999999988642 379999999988754
Q ss_pred ccCCCcceEeeccCccc
Q 016715 213 KSSSGFAKVVANIPFNI 229 (384)
Q Consensus 213 ~~~~~~d~Vv~NlPy~i 229 (384)
+.+|.|++|..++.
T Consensus 124 ---~~~D~vv~~~~l~~ 137 (247)
T PRK15451 124 ---ENASMVVLNFTLQF 137 (247)
T ss_pred ---CCCCEEehhhHHHh
Confidence 34788998876543
No 80
>PRK05785 hypothetical protein; Provisional
Probab=99.00 E-value=9.2e-10 Score=102.06 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=60.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
++.+|||||||||.++..+++. +.+|+|+|++++|++.++++. ..+++|+.++++++ +.||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~d------------~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFRD------------KSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCCC------------CCEE
Confidence 4679999999999999999988 679999999999999998642 35789999988764 6899
Q ss_pred eEeeccCccc
Q 016715 220 KVVANIPFNI 229 (384)
Q Consensus 220 ~Vv~NlPy~i 229 (384)
.|+++...+.
T Consensus 113 ~v~~~~~l~~ 122 (226)
T PRK05785 113 VVMSSFALHA 122 (226)
T ss_pred EEEecChhhc
Confidence 9999765443
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=3.4e-09 Score=101.79 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=79.2
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---Ce
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL 189 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v 189 (384)
.|...||........+...+++... .++++|||+|||+|.++..+++.|+ +|+|+|+|+.+++.++++...++ ++
T Consensus 133 dpg~aFgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~ 211 (288)
T TIGR00406 133 DPGLAFGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL 211 (288)
T ss_pred CCCCcccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence 4455566544433444444444443 3678999999999999999998875 89999999999999999876432 45
Q ss_pred EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc----HHHHHHhcccCCCee
Q 016715 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFS 245 (384)
Q Consensus 190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~----~~il~~L~~~g~~~~ 245 (384)
.+..+|.... ..+.||+|++|+..... ..+...|+++|.++.
T Consensus 212 ~~~~~~~~~~--------------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 212 QVKLIYLEQP--------------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred EEEecccccc--------------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 6666653221 12579999999765432 334456666665543
No 82
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.99 E-value=3.9e-10 Score=100.33 Aligned_cols=78 Identities=23% Similarity=0.281 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~ 209 (384)
+.|.+++. +|.+|||+|||.|.+...|.+. +.+.+|||+|++.+..+.++ .+.++++|+.+.- ..
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL-~~------ 70 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGL-AD------ 70 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhH-hh------
Confidence 34555554 6789999999999999999984 78999999999998888765 7889999998742 11
Q ss_pred hhhccCCCcceEeecc
Q 016715 210 ERRKSSSGFAKVVANI 225 (384)
Q Consensus 210 ~~~~~~~~~d~Vv~Nl 225 (384)
...+.||.||.+-
T Consensus 71 ---f~d~sFD~VIlsq 83 (193)
T PF07021_consen 71 ---FPDQSFDYVILSQ 83 (193)
T ss_pred ---CCCCCccEEehHh
Confidence 1237899999753
No 83
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.99 E-value=1.9e-09 Score=98.24 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc-cccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~-~~~~~~~~~~~~~~~~~~~ 215 (384)
++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++.... ++++++++|+ ..++.. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence 5679999999999999999886 458999999999999999887542 5899999999 554310 012
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+.+|.|++|.|.
T Consensus 110 ~~~D~V~~~~~~ 121 (202)
T PRK00121 110 GSLDRIYLNFPD 121 (202)
T ss_pred cccceEEEECCC
Confidence 579999998653
No 84
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.99 E-value=1.7e-09 Score=96.66 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=73.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--c---------EEEEeCCHHHHHHHHHHhcCC---CC
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--T---------VLAIEKDQHMVGLVRERFASI---DQ 188 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~---------V~avE~d~~~~~~a~~~~~~~---~~ 188 (384)
--.++.++..|+.....++++.|||.-||+|++..+.+..+. . ++|.|+|+.+++.+++++... ..
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 457789999999999999999999999999999988877633 3 779999999999999998743 36
Q ss_pred eEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
+.+.++|+.++++.+ +.+|.||+|+||...
T Consensus 90 i~~~~~D~~~l~~~~------------~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 90 IDFIQWDARELPLPD------------GSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEEE--GGGGGGTT------------SBSCEEEEE--STTS
T ss_pred eEEEecchhhccccc------------CCCCEEEECcchhhh
Confidence 899999999998432 578999999999653
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.99 E-value=2e-09 Score=103.41 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
.++.+|||+|||+|..+..+++.|.+|+|+|+++.+++.++++....+ ++++..+|+...+++ +.|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~-------------~~f 185 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQ-------------EEY 185 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccccc-------------CCc
Confidence 345699999999999999999999999999999999999998875433 788888888765432 579
Q ss_pred ceEeeccCc
Q 016715 219 AKVVANIPF 227 (384)
Q Consensus 219 d~Vv~NlPy 227 (384)
|.|+++..+
T Consensus 186 D~I~~~~vl 194 (287)
T PRK12335 186 DFILSTVVL 194 (287)
T ss_pred cEEEEcchh
Confidence 999998655
No 86
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.99 E-value=1.5e-09 Score=100.26 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=80.4
Q ss_pred CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--------CeEEEEccccccchhhhhhhHHhhhc
Q 016715 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--------~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
|.+|||+|||+|.++..|++.|+.|+|||+++.|++.|++.....| ++++.+.|++...
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------------- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------------- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence 5789999999999999999999999999999999999999854332 2556666665542
Q ss_pred cCCCcceEeeccCc-------cccHHHHHHhcccCCCeeEE---------EEEeeHHHHHHHhcCCCCCCCccc
Q 016715 214 SSSGFAKVVANIPF-------NISTDVIKQLLPMGDIFSEV---------VLLLQEETALRLVEPSLRTSEYRP 271 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy-------~i~~~il~~L~~~g~~~~~~---------~~~~qke~a~rl~~a~pg~~~y~~ 271 (384)
+.||.|++.--+ .+...+...|+++|++|... .-++-.|...+++ ++|+..+..
T Consensus 157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv--p~Gth~~ek 226 (282)
T KOG1270|consen 157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV--PKGTHTWEK 226 (282)
T ss_pred --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc--CCCCcCHHH
Confidence 569999985322 33334456778888876432 2334456667754 566655443
No 87
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.98 E-value=2.7e-09 Score=97.37 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.++.+|||||||+|..+..+++. +.+++|||+++.+++.|+++. +++.++++|+.+ ++.+ +.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~~~~------------~s 105 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-PFKD------------NF 105 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-CCCC------------CC
Confidence 35678999999999999999887 579999999999999999875 467889999887 5433 68
Q ss_pred cceEeeccCc-ccc
Q 016715 218 FAKVVANIPF-NIS 230 (384)
Q Consensus 218 ~d~Vv~NlPy-~i~ 230 (384)
||+|+++-.+ ++.
T Consensus 106 fD~V~~~~vL~hl~ 119 (204)
T TIGR03587 106 FDLVLTKGVLIHIN 119 (204)
T ss_pred EEEEEECChhhhCC
Confidence 9999987554 444
No 88
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=2.6e-09 Score=103.44 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=62.6
Q ss_pred CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++++... ++++++++|+.+.. + ...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-~------------~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-P------------GRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-C------------CCC
Confidence 68999999999999999987 469999999999999999998643 36999999986521 1 146
Q ss_pred cceEeeccCcccc
Q 016715 218 FAKVVANIPFNIS 230 (384)
Q Consensus 218 ~d~Vv~NlPy~i~ 230 (384)
||.|++|+||.-.
T Consensus 202 fDlIvsNPPyi~~ 214 (307)
T PRK11805 202 YDLIVSNPPYVDA 214 (307)
T ss_pred ccEEEECCCCCCc
Confidence 9999999999543
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.97 E-value=7.6e-09 Score=100.21 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=82.8
Q ss_pred CCcccCCCcccCCHHHHH-----HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHH---Hhc
Q 016715 114 FPRKSLGQHYMLNSEIND-----QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFA 184 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~-----~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~---~~~ 184 (384)
+++-.+.| |.++.+... .++..+...++++|||||||+|+++..++..|+ .|+|+|.++.|+..++. ...
T Consensus 90 ~~~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~ 168 (314)
T TIGR00452 90 KGPFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD 168 (314)
T ss_pred CCCccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc
Confidence 45555666 677777654 355566667889999999999999999998876 69999999999876533 222
Q ss_pred CCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccC-cccc------HHHHHHhcccCCCee
Q 016715 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS------TDVIKQLLPMGDIFS 245 (384)
Q Consensus 185 ~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP-y~i~------~~il~~L~~~g~~~~ 245 (384)
...++.+..+|+.+++.. ..||.|+++-. |+.. ..+.+.|.++|.++.
T Consensus 169 ~~~~v~~~~~~ie~lp~~-------------~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 169 NDKRAILEPLGIEQLHEL-------------YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred cCCCeEEEECCHHHCCCC-------------CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence 335788888988887642 47999998743 3332 233445666666543
No 90
>PRK04266 fibrillarin; Provisional
Probab=98.97 E-value=3.9e-09 Score=97.77 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=72.8
Q ss_pred HHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
+.+.+.++++|||+|||+|.++..+++.. .+|+|+|+++.|++.+.++....+|+.++.+|+.+..... +
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~---~----- 137 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA---H----- 137 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh---h-----
Confidence 35788899999999999999999999873 5899999999999988777655568999999987521100 0
Q ss_pred ccCCCcceEeeccCccc-----cHHHHHHhcccCCC
Q 016715 213 KSSSGFAKVVANIPFNI-----STDVIKQLLPMGDI 243 (384)
Q Consensus 213 ~~~~~~d~Vv~NlPy~i-----~~~il~~L~~~g~~ 243 (384)
-...+|.|+++.+... ...+.+.|+++|.+
T Consensus 138 -l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~l 172 (226)
T PRK04266 138 -VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYL 172 (226)
T ss_pred -ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEE
Confidence 1145899998876422 22333455666654
No 91
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.96 E-value=2.8e-09 Score=108.12 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~ 205 (384)
.+.+.+.+.+.+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..+ .+++++++|+.+... ..
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~-~~- 356 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP-KQ- 356 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH-HH-
Confidence 34455666666677789999999999999999998889999999999999999988643 489999999976421 10
Q ss_pred hhHHhhhccCCCcceEeeccCccc-cHHHHHHhcc
Q 016715 206 LSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLP 239 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i-~~~il~~L~~ 239 (384)
. .....+|+|+.|+|+.- ...++..+..
T Consensus 357 ---~---~~~~~~D~vi~dPPr~G~~~~~l~~l~~ 385 (431)
T TIGR00479 357 ---P---WAGQIPDVLLLDPPRKGCAAEVLRTIIE 385 (431)
T ss_pred ---H---hcCCCCCEEEECcCCCCCCHHHHHHHHh
Confidence 0 01246899999999854 5666665543
No 92
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.95 E-value=2.5e-09 Score=109.78 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
......+++.+...++++|||||||+|.++..+++.+.+|+|+|+++.+++.++......+++.++++|+.+..++.
T Consensus 23 ~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~--- 99 (475)
T PLN02336 23 KEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNI--- 99 (475)
T ss_pred chhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCC---
Confidence 34456777777776778999999999999999999988999999999999988765444468999999997432210
Q ss_pred hHHhhhccCCCcceEeeccCccc
Q 016715 207 SLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
..+.||+|+++.+++.
T Consensus 100 -------~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 100 -------SDGSVDLIFSNWLLMY 115 (475)
T ss_pred -------CCCCEEEEehhhhHHh
Confidence 1257999999987754
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=4.1e-09 Score=108.69 Aligned_cols=76 Identities=20% Similarity=0.367 Sum_probs=62.5
Q ss_pred CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...+ ++++++++|+.+.. ...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-------------~~~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-------------EKQ 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-------------cCC
Confidence 468999999999999998875 569999999999999999987643 37899999976521 124
Q ss_pred CcceEeeccCcccc
Q 016715 217 GFAKVVANIPFNIS 230 (384)
Q Consensus 217 ~~d~Vv~NlPy~i~ 230 (384)
.||+||+|+||...
T Consensus 206 ~fDlIvsNPPYi~~ 219 (506)
T PRK01544 206 KFDFIVSNPPYISH 219 (506)
T ss_pred CccEEEECCCCCCc
Confidence 79999999999553
No 94
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.92 E-value=6.5e-09 Score=101.39 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=73.5
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHH--hc-CCCCeEEEEccccccchhhhhh
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FA-SIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~--~~-~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
+.++..+...++.+|||||||+|+++..++..++ .|+|+|.++.++..++.. .. ...++.++.+|+.++++ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~--- 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L--- 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---
Confidence 4556677666789999999999999999999876 699999999998765432 22 23489999999998875 2
Q ss_pred hHHhhhccCCCcceEeecc-Ccccc------HHHHHHhcccCCCe
Q 016715 207 SLFERRKSSSGFAKVVANI-PFNIS------TDVIKQLLPMGDIF 244 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~Nl-Py~i~------~~il~~L~~~g~~~ 244 (384)
+.||.|+++- -|++. ..+...|.++|.++
T Consensus 188 ---------~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 188 ---------KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred ---------CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence 5799999853 23332 23344555666554
No 95
>PRK08317 hypothetical protein; Provisional
Probab=98.91 E-value=1e-08 Score=94.59 Aligned_cols=104 Identities=23% Similarity=0.320 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhc-CCCCeEEEEccccccchhh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~ 203 (384)
.+.+.+++.+.+.++.+|||+|||+|.++..++... .+++++|+++.+++.++++.. ..+++.++.+|+.+.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence 455677888888889999999999999999999863 589999999999999998743 2358999999998876543
Q ss_pred hhhhHHhhhccCCCcceEeeccCccc-------cHHHHHHhcccCCC
Q 016715 204 HMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDI 243 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~~~il~~L~~~g~~ 243 (384)
+.||.|+++..+.. ...+...|+++|.+
T Consensus 86 ------------~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 120 (241)
T PRK08317 86 ------------GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRV 120 (241)
T ss_pred ------------CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEE
Confidence 57999998755422 23444566666654
No 96
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.91 E-value=3.8e-09 Score=95.60 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=62.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
...+|||||||+|.++..++.. +.+|+|+|+++.+++.++++... .+|++++++|+.++.... + ..+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~-----~----~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF-----F----PDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh-----C----CCC
Confidence 4568999999999999999987 56999999999999999887653 248999999998754210 0 124
Q ss_pred CcceEeeccCc
Q 016715 217 GFAKVVANIPF 227 (384)
Q Consensus 217 ~~d~Vv~NlPy 227 (384)
.+|.|+.|+|-
T Consensus 87 ~~d~v~~~~pd 97 (194)
T TIGR00091 87 SLSKVFLNFPD 97 (194)
T ss_pred ceeEEEEECCC
Confidence 78999999764
No 97
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.91 E-value=6.2e-09 Score=97.15 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhh
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|++++... .+++++++|+.++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence 46779999999999999999874 568999999999999999987642 378999999998764
Q ss_pred ccCCCcceEeeccCcc
Q 016715 213 KSSSGFAKVVANIPFN 228 (384)
Q Consensus 213 ~~~~~~d~Vv~NlPy~ 228 (384)
+.+|.|+++..++
T Consensus 121 ---~~~d~v~~~~~l~ 133 (239)
T TIGR00740 121 ---KNASMVILNFTLQ 133 (239)
T ss_pred ---CCCCEEeeecchh
Confidence 2468888876553
No 98
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.91 E-value=1.1e-08 Score=101.97 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
...+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++.+++.++++.... ++++..+|+.+++
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l~------ 226 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDLN------ 226 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhcC------
Confidence 34556778888889999999999999999999986 789999999999999999987532 5788888876541
Q ss_pred hHHhhhccCCCcceEeeccCc
Q 016715 207 SLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+.||.|+++..+
T Consensus 227 ---------~~fD~Ivs~~~~ 238 (383)
T PRK11705 227 ---------GQFDRIVSVGMF 238 (383)
T ss_pred ---------CCCCEEEEeCch
Confidence 579999887543
No 99
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=7.3e-09 Score=100.37 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=62.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC----CeEEEE-ccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~----~v~~~~-gD~~~~~~~~~~~~~~~~~~ 213 (384)
.+.+|||||||+|.+...|+.+ +.+++|+|+|+.+++.|+++++.++ ++++++ .|..++... +. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-----i~---~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-----II---H 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-----cc---c
Confidence 4579999999999988888765 6799999999999999999988652 566654 333222110 00 0
Q ss_pred cCCCcceEeeccCccccHHH
Q 016715 214 SSSGFAKVVANIPFNISTDV 233 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy~i~~~i 233 (384)
..+.||.|++|+||+.+.+-
T Consensus 186 ~~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 186 KNERFDATLCNPPFHASAAE 205 (321)
T ss_pred cCCceEEEEeCCCCcCcchh
Confidence 13579999999999887543
No 100
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.90 E-value=9.4e-09 Score=102.79 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=73.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~ 197 (384)
+..|.+..+..+..+. ++++|||+|||+|.++..++..++ +|++||+|+.+++.+++++..+ ++++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 4444455555555543 578999999999999988776665 8999999999999999998743 26899999997
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
++... +. .....||+||.|+||...
T Consensus 282 ~~l~~-----~~---~~~~~fDlVilDPP~f~~ 306 (396)
T PRK15128 282 KLLRT-----YR---DRGEKFDVIVMDPPKFVE 306 (396)
T ss_pred HHHHH-----HH---hcCCCCCEEEECCCCCCC
Confidence 75311 00 013579999999999554
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=6.9e-09 Score=105.09 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccch
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHI 201 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~ 201 (384)
.++.....++..+++.++++|||+|||+|..|..+++.+ .+|+|+|+++.+++.+++++...+ +++++++|+.+.+.
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~ 307 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ 307 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh
Confidence 344455566777888899999999999999999999874 589999999999999999987543 57899999987532
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
.. ....||.|+.|+|+.
T Consensus 308 ~~----------~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 308 WW----------DGQPFDRILLDAPCS 324 (427)
T ss_pred hc----------ccCCCCEEEECCCCC
Confidence 10 125799999999975
No 102
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.89 E-value=6.7e-09 Score=98.80 Aligned_cols=95 Identities=18% Similarity=0.338 Sum_probs=72.3
Q ss_pred hcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhh
Q 016715 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
..+.++++|||||||+|..+..++.. + .+|+++|+++.+++.++++... .++++++.+|+.++++.+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~-------- 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD-------- 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--------
Confidence 34568899999999999988877765 4 3799999999999999988653 348999999998877543
Q ss_pred hccCCCcceEeeccCcccc-------HHHHHHhcccCCC
Q 016715 212 RKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI 243 (384)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i~-------~~il~~L~~~g~~ 243 (384)
+.||.|++|..++.. ..+.+.|.++|.+
T Consensus 145 ----~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 145 ----NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRF 179 (272)
T ss_pred ----CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEE
Confidence 579999998655433 2444455565554
No 103
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.89 E-value=8e-09 Score=100.95 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715 127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 127 ~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~ 203 (384)
+.+.+.+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+++.|++.++++.. ..+++++.+|+.++++.+
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCCC
Confidence 4555666776654 35789999999999999998875 4689999999999999998764 347899999999887643
Q ss_pred hhhhHHhhhccCCCcceEeeccCccc-------cHHHHHHhcccCCC
Q 016715 204 HMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDI 243 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~~~il~~L~~~g~~ 243 (384)
+.||+|+++..++. ..++.+.|+++|.+
T Consensus 177 ------------~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~L 211 (340)
T PLN02490 177 ------------DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA 211 (340)
T ss_pred ------------CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEE
Confidence 57999998765432 23455666776664
No 104
>PRK04148 hypothetical protein; Provisional
Probab=98.89 E-value=1.4e-08 Score=85.68 Aligned_cols=93 Identities=14% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
.+.+.|.+.+...++.+|||||||+|. ++..|++.|.+|+|+|+++..++.++++ .+.++.+|..+.++.-
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~--- 74 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEI--- 74 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHH---
Confidence 355666666665567899999999996 8889998899999999999999988776 4789999999877542
Q ss_pred hHHhhhccCCCcceEee-ccCccccHHHHHH
Q 016715 207 SLFERRKSSSGFAKVVA-NIPFNISTDVIKQ 236 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~-NlPy~i~~~il~~ 236 (384)
...+|.|.+ ++|-.+..++++-
T Consensus 75 --------y~~a~liysirpp~el~~~~~~l 97 (134)
T PRK04148 75 --------YKNAKLIYSIRPPRDLQPFILEL 97 (134)
T ss_pred --------HhcCCEEEEeCCCHHHHHHHHHH
Confidence 256888886 5777777666653
No 105
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.89 E-value=5.4e-09 Score=96.59 Aligned_cols=89 Identities=26% Similarity=0.368 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 128 ~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (384)
.+...+++.+.. ..+.+|||||||+|.++..+++.+ .+++++|+++.++..++++.. +++.++.+|+.+.++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~ 95 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPLE 95 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCCC
Confidence 344445554432 334689999999999999999885 478999999999999998765 4789999999987754
Q ss_pred hhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
+ +.||+|+++..++..
T Consensus 96 ~------------~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 96 D------------SSFDLIVSNLALQWC 111 (240)
T ss_pred C------------CceeEEEEhhhhhhc
Confidence 3 579999998766443
No 106
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.88 E-value=8.7e-09 Score=99.92 Aligned_cols=85 Identities=24% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-------CCeEEEEccc
Q 016715 127 SEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDF 196 (384)
Q Consensus 127 ~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-------~~v~~~~gD~ 196 (384)
..+++.+++++.. .++.+|||||||+|.++..+++.|.+|+|+|+++.|++.++++.... .++++..+|+
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3556777777753 25789999999999999999999999999999999999999987532 3577888886
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeeccC
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
.+++ +.||.|+++..
T Consensus 207 ~~l~---------------~~fD~Vv~~~v 221 (315)
T PLN02585 207 ESLS---------------GKYDTVTCLDV 221 (315)
T ss_pred hhcC---------------CCcCEEEEcCE
Confidence 5431 57899987633
No 107
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6.2e-09 Score=104.84 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH 204 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~ 204 (384)
+.+++..+++++..++++|||+.||.|++|..|+++..+|+|+|+++++++.|+++++.+ .|++++.+|+.++....
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~- 357 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW- 357 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc-
Confidence 444455556667778899999999999999999999999999999999999999998865 38999999999876432
Q ss_pred hhhHHhhhccCCCcceEeeccCccccH-HHHHHhcccCC
Q 016715 205 MLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGD 242 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~~-~il~~L~~~g~ 242 (384)
+....+|.||-|+|..-.. ++++.+...+.
T Consensus 358 --------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p 388 (432)
T COG2265 358 --------WEGYKPDVVVVDPPRAGADREVLKQLAKLKP 388 (432)
T ss_pred --------cccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence 1235789999999996655 88887776554
No 108
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.88 E-value=7.9e-09 Score=92.24 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=62.8
Q ss_pred HhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+....-.++||+|||.|.+|..|+.+..+++++|+++..++.|++++...++|+++++|+.+... .
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P-------------~ 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP-------------E 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC-------------C
Confidence 455555679999999999999999999889999999999999999999888899999999977532 3
Q ss_pred CCcceEe-eccCcccc
Q 016715 216 SGFAKVV-ANIPFNIS 230 (384)
Q Consensus 216 ~~~d~Vv-~NlPy~i~ 230 (384)
+.||+|| +-+-|++.
T Consensus 105 ~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLD 120 (201)
T ss_dssp S-EEEEEEES-GGGSS
T ss_pred CCeeEEEEehHhHcCC
Confidence 6889875 55778886
No 109
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.87 E-value=1.7e-08 Score=95.00 Aligned_cols=90 Identities=29% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
.++++|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++..++ +. +...+... ...|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~~~------------~~~f 180 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLPQG------------DLKA 180 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEccC------------CCCc
Confidence 4678999999999999999888876 59999999999999999876432 20 11111110 0258
Q ss_pred ceEeeccCccccH----HHHHHhcccCCCeeE
Q 016715 219 AKVVANIPFNIST----DVIKQLLPMGDIFSE 246 (384)
Q Consensus 219 d~Vv~NlPy~i~~----~il~~L~~~g~~~~~ 246 (384)
|+|++|+...... .+...|+++|.++..
T Consensus 181 D~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 181 DVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999997654333 344556666665543
No 110
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.86 E-value=1.8e-08 Score=93.03 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccch
Q 016715 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI 201 (384)
Q Consensus 128 ~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~ 201 (384)
...+.+++++.. .++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++.... +++.+..+|+...
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 124 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-- 124 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--
Confidence 445556666543 46789999999999999999999889999999999999999987542 3788999984321
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCc
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
.+.||+|+++-.+
T Consensus 125 -------------~~~fD~v~~~~~l 137 (230)
T PRK07580 125 -------------LGRFDTVVCLDVL 137 (230)
T ss_pred -------------cCCcCEEEEcchh
Confidence 1579999886544
No 111
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.86 E-value=1e-08 Score=97.22 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhh
Q 016715 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~ 206 (384)
.....+.+.++++|||+|||+|..|..+++. ...|+|+|+++.+++.+++++... .+++++++|+..++..
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---- 137 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---- 137 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh----
Confidence 3345667788999999999999999999886 248999999999999999998754 4789999998765432
Q ss_pred hHHhhhccCCCcceEeeccCcc
Q 016715 207 SLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
.+.||.|+.|+|..
T Consensus 138 --------~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 138 --------VPKFDAILLDAPCS 151 (264)
T ss_pred --------ccCCCEEEEcCCCC
Confidence 14699999999874
No 112
>PRK06922 hypothetical protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=106.36 Aligned_cols=78 Identities=12% Similarity=0.339 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccc--hhhhhhhHHhhhc
Q 016715 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH--IRSHMLSLFERRK 213 (384)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~--~~~~~~~~~~~~~ 213 (384)
..++.+|||||||+|.++..+++. +.+|+|+|+++.|++.++++.... .++.++++|+.+++ ++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fe----------- 484 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFE----------- 484 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccC-----------
Confidence 346789999999999999988875 569999999999999999876532 37888999998865 22
Q ss_pred cCCCcceEeeccCcc
Q 016715 214 SSSGFAKVVANIPFN 228 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy~ 228 (384)
.+.+|+|++|.+++
T Consensus 485 -deSFDvVVsn~vLH 498 (677)
T PRK06922 485 -KESVDTIVYSSILH 498 (677)
T ss_pred -CCCEEEEEEchHHH
Confidence 25799999987664
No 113
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.85 E-value=1.5e-08 Score=100.29 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=68.8
Q ss_pred HHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhh
Q 016715 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~ 207 (384)
.+++.+....+..+||||||+|..+..+|.. +..++|+|+++.+++.+.+++... +|+.++++|+..+... +
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~--~-- 188 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL--L-- 188 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh--C--
Confidence 3444555556779999999999999999988 469999999999999998887543 5899999999765311 0
Q ss_pred HHhhhccCCCcceEeeccCccc
Q 016715 208 LFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
..+.+|.|+.|.|.-|
T Consensus 189 ------~~~s~D~I~lnFPdPW 204 (390)
T PRK14121 189 ------PSNSVEKIFVHFPVPW 204 (390)
T ss_pred ------CCCceeEEEEeCCCCc
Confidence 1267999999987643
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=98.84 E-value=3.7e-08 Score=94.08 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH--c--CCcEEEEeCCHHHHHHHHHHhcC----CCCeEEEEc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--A--GATVLAIEKDQHMVGLVRERFAS----IDQLKVLQE 194 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~--~--~~~V~avE~d~~~~~~a~~~~~~----~~~v~~~~g 194 (384)
|+.=.++--.++..+....+++|+|||||.|-+|..+.. . +.+++++|+|+++++.|++.+.. .++++|..+
T Consensus 105 Y~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 105 YLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC
Confidence 433333333455555445778999999998866655443 2 45799999999999999998843 247999999
Q ss_pred cccccchhhhhhhHHhhhccCCCcceEeec
Q 016715 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
|+.+.... .+.||+|+++
T Consensus 185 Da~~~~~~------------l~~FDlVF~~ 202 (296)
T PLN03075 185 DVMDVTES------------LKEYDVVFLA 202 (296)
T ss_pred chhhcccc------------cCCcCEEEEe
Confidence 99885321 1579999987
No 115
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=9.6e-09 Score=99.15 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=86.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEc-ccccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQE-DFVKC 199 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~g-D~~~~ 199 (384)
--.+|++...+++.....+|+.|||-.||||.+...+.-.|++++|.|+|.+|++-++.|+... ....++.+ |+.++
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 4578999999999999999999999999999999999999999999999999999999999865 36666666 99999
Q ss_pred chhhhhhhHHhhhccCCCcceEeeccCccccH
Q 016715 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~ 231 (384)
++++ ..+|.|++++||-.++
T Consensus 259 pl~~------------~~vdaIatDPPYGrst 278 (347)
T COG1041 259 PLRD------------NSVDAIATDPPYGRST 278 (347)
T ss_pred CCCC------------CccceEEecCCCCccc
Confidence 9764 4699999999997765
No 116
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.83 E-value=2.1e-08 Score=93.67 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~ 198 (384)
.-+.-+..|+..+++.+|++|||.|.|+|.+|..|+.. + .+|+..|+.++.++.|++++... +++.+.++|+.+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 34566788999999999999999999999999999986 3 49999999999999999998753 489999999976
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccC--ccccHHHHHHh-cccCCCe
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQL-LPMGDIF 244 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~~~il~~L-~~~g~~~ 244 (384)
-.+.+. ....+|.|+.++| +...+.+...| .++|.+.
T Consensus 104 ~g~~~~---------~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 104 EGFDEE---------LESDFDAVFLDLPDPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp G--STT----------TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEE
T ss_pred cccccc---------ccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEE
Confidence 444221 1257999999986 56677778888 6666553
No 117
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.82 E-value=2.1e-08 Score=99.00 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSH 204 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~ 204 (384)
..+++.+++.+...+ .+|||+|||+|.++..|++...+|+|||+++.+++.|++++..+ .+++++.+|+.++.....
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 262 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMN 262 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHh
Confidence 444455555554333 47999999999999999988789999999999999999998654 389999999987532100
Q ss_pred hh-hH--Hhhh-ccCCCcceEeeccCccc-cHHHHHHhcc
Q 016715 205 ML-SL--FERR-KSSSGFAKVVANIPFNI-STDVIKQLLP 239 (384)
Q Consensus 205 ~~-~~--~~~~-~~~~~~d~Vv~NlPy~i-~~~il~~L~~ 239 (384)
-. .+ .... .....+|+|+.|+|..- ...++..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~ 302 (353)
T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA 302 (353)
T ss_pred hccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 00 00 0000 00013799999999854 4566677765
No 118
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.82 E-value=2.1e-08 Score=97.26 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=75.1
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHH---------cCCcEEEEeCCHHHHHHHHHHhc
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA 184 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~---------~~~~V~avE~d~~~~~~a~~~~~ 184 (384)
..++..|| |.++..+++.|++.+...++++|+|..||+|.+...+.+ ...+++|+|+++.++..++.++.
T Consensus 20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34667888 889999999999999988888999999999999888776 24589999999999998887653
Q ss_pred CC----CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 185 SI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 185 ~~----~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
-. .+..+.++|.+.-+... ....||+|++|+||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~----------~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFI----------KNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCT----------ST--EEEEEEE--CTCE
T ss_pred hhccccccccccccccccccccc----------cccccccccCCCCcccc
Confidence 21 24568899987654321 12579999999999655
No 119
>PLN02672 methionine S-methyltransferase
Probab=98.82 E-value=1.3e-08 Score=111.71 Aligned_cols=95 Identities=13% Similarity=0.209 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHHhcCC-----CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC----------
Q 016715 124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI---------- 186 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~-----~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~---------- 186 (384)
+.++.-.+.+++.+... ++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|...+
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 34444455666654322 24689999999999999999873 58999999999999999987532
Q ss_pred --------CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715 187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 187 --------~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
++++++++|..+.... ....+|+||+|+||--
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~-----------~~~~fDlIVSNPPYI~ 215 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRD-----------NNIELDRIVGCIPQIL 215 (1082)
T ss_pred ccccccccccEEEEECchhhhccc-----------cCCceEEEEECCCcCC
Confidence 3689999998764311 1136999999999943
No 120
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.81 E-value=2.9e-08 Score=91.83 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcccccc
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKC 199 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~ 199 (384)
.......++..+...++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++.. .+++.++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 34566677777777778899999999999999999875 7999999999999999998754 24789999999887
Q ss_pred chhhhhhhHHhhhccCCCcceEeecc
Q 016715 200 HIRSHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
++.. +.+|+|+++.
T Consensus 116 ~~~~------------~~~D~I~~~~ 129 (239)
T PRK00216 116 PFPD------------NSFDAVTIAF 129 (239)
T ss_pred CCCC------------CCccEEEEec
Confidence 6432 5789998753
No 121
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.81 E-value=2.7e-08 Score=89.46 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=60.9
Q ss_pred HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhh
Q 016715 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
+++.+...++.++||+|||.|..+..|+++|.+|+|+|+++..++.+++.....+ .++....|..+..++
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~--------- 92 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP--------- 92 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T---------
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc---------
Confidence 4455555567799999999999999999999999999999999999887665333 688899998887653
Q ss_pred hccCCCcceEeec
Q 016715 212 RKSSSGFAKVVAN 224 (384)
Q Consensus 212 ~~~~~~~d~Vv~N 224 (384)
..+|.|++.
T Consensus 93 ----~~yD~I~st 101 (192)
T PF03848_consen 93 ----EEYDFIVST 101 (192)
T ss_dssp ----TTEEEEEEE
T ss_pred ----CCcCEEEEE
Confidence 468998874
No 122
>PRK06202 hypothetical protein; Provisional
Probab=98.81 E-value=1.8e-08 Score=93.66 Aligned_cols=78 Identities=23% Similarity=0.190 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.++.+|||||||+|.++..|++. | .+|+|+|+++.|++.++++... .++++..+|+..++..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~~~---------- 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVAEG---------- 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccccC----------
Confidence 46679999999999999988753 3 4899999999999999887543 46777777766655422
Q ss_pred cCCCcceEeeccCcccc
Q 016715 214 SSSGFAKVVANIPFNIS 230 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy~i~ 230 (384)
+.+|+|++|..++..
T Consensus 128 --~~fD~V~~~~~lhh~ 142 (232)
T PRK06202 128 --ERFDVVTSNHFLHHL 142 (232)
T ss_pred --CCccEEEECCeeecC
Confidence 579999999776443
No 123
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.81 E-value=2.4e-08 Score=98.94 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHh----cCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715 125 LNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (384)
Q Consensus 125 ~~~~~~~~il~~l----~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~ 198 (384)
.|+...+.+++++ ... +.+|||++||+|.++..+++...+|+|||+++.+++.+++++..+ ++++++.+|+.+
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5666666666554 322 357999999999999999988779999999999999999987643 489999999977
Q ss_pred cchhhhhhhHHhhhc---------cCCCcceEeeccCccc-cHHHHHHhcc
Q 016715 199 CHIRSHMLSLFERRK---------SSSGFAKVVANIPFNI-STDVIKQLLP 239 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~---------~~~~~d~Vv~NlPy~i-~~~il~~L~~ 239 (384)
+.. . +..... ....+|+||.++|+.- ...++..|..
T Consensus 266 ~l~-~----~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~ 311 (362)
T PRK05031 266 FTQ-A----MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA 311 (362)
T ss_pred HHH-H----HhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 521 1 000000 0124899999999954 4566777765
No 124
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.9e-08 Score=92.84 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccc
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~ 200 (384)
|.-...|+..+++.+|++|+|.|.|+|++|++|+.. | .+|+++|+.++.++.|++|++.. +++.+..+|+.+.-
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 445677999999999999999999999999999975 3 49999999999999999998752 35899999998875
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccC--ccccHHHHHHhcccCCCeeEEEEEeeHHHHHHHhcCCCCCCCcccceeeeee
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~~~il~~L~~~g~~~~~~~~~~qke~a~rl~~a~pg~~~y~~lsvl~q~ 278 (384)
.. ..+|.||.++| ++..+.+...|++++.+....... |-.++.+.+-.. ..|..+.+
T Consensus 160 ~~-------------~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v---eQv~kt~~~l~~-~g~~~ie~---- 218 (256)
T COG2519 160 DE-------------EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV---EQVEKTVEALRE-RGFVDIEA---- 218 (256)
T ss_pred cc-------------cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHHHHHh-cCccchhh----
Confidence 43 47999999985 577777888888876543222222 333333311111 12222221
Q ss_pred cccceEEEEeCCCCCCCCCC--CceEEEEEEEcC
Q 016715 279 YSEPEYKFKVPRTNFFPQPK--VDAAVVTFKLKQ 310 (384)
Q Consensus 279 ~~~~~~~~~v~~~~F~P~Pk--V~s~vv~l~~~~ 310 (384)
+.-......+.+....|.-. ..++.|.+.++.
T Consensus 219 ~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~~ 252 (256)
T COG2519 219 VETLVRRWEVRKEATRPETRMVGHTGYIVFARKL 252 (256)
T ss_pred heeeeheeeecccccCcccccccceeEEEEEeec
Confidence 22223335677888888743 245666666543
No 125
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.79 E-value=1.5e-08 Score=105.20 Aligned_cols=105 Identities=15% Similarity=0.277 Sum_probs=78.9
Q ss_pred ccCCCcccCCHHHHHHHHHHhcCC-------CCCEEEEEcCcchHHHHHHHHcC----------CcEEEEeCCHHHHHHH
Q 016715 117 KSLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLV 179 (384)
Q Consensus 117 ~~~gq~fl~~~~~~~~il~~l~~~-------~~~~VLEIG~G~G~lt~~La~~~----------~~V~avE~d~~~~~~a 179 (384)
|..|| |.|++.+++.|++.+... .+.+|||.|||+|.+...++... .+++|+|+|+.+++.+
T Consensus 1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 45788 999999999999987432 34589999999999999887641 4789999999999999
Q ss_pred HHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715 180 RERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 180 ~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
+.++...+ .+.+.++|.+...+... . ...+.||+||+||||..
T Consensus 80 ~~~l~~~~~~~~~i~~~d~l~~~~~~~-----~--~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 80 KKLLGEFALLEINVINFNSLSYVLLNI-----E--SYLDLFDIVITNPPYGR 124 (524)
T ss_pred HHHHhhcCCCCceeeeccccccccccc-----c--cccCcccEEEeCCCccc
Confidence 98876443 46677777665332100 0 01257999999999964
No 126
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=3.3e-08 Score=100.65 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccc
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~ 200 (384)
++.....+...+.+.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++... ++++++++|+.++.
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH 314 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 3344445666777888899999999999999999986 358999999999999999988643 36999999998763
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
.. ..+.||.|+.|+|+.
T Consensus 315 ~~-----------~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 315 EK-----------FAEKFDKILVDAPCS 331 (444)
T ss_pred ch-----------hcccCCEEEEcCCCC
Confidence 21 014799999999963
No 127
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.77 E-value=5e-08 Score=89.74 Aligned_cols=126 Identities=17% Similarity=0.280 Sum_probs=89.9
Q ss_pred CCCCCCcccchHHHHHHHHHHHhhC-CCChHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 016715 73 RPAHSSIAGVQKGAASACIVCARSQ-DDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151 (384)
Q Consensus 73 ~~~~~~~~~~~~~~r~~mv~~~ir~-~~~~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G 151 (384)
...|-....+.+.+....|...... ...|+...++|. +|+|-+. -+..+.++++.++.++||++||
T Consensus 44 ~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mS---------lGiHRlW----Kd~~v~~L~p~~~m~~lDvaGG 110 (296)
T KOG1540|consen 44 KCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMS---------LGIHRLW----KDMFVSKLGPGKGMKVLDVAGG 110 (296)
T ss_pred ccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhh---------cchhHHH----HHHhhhccCCCCCCeEEEecCC
Confidence 3445555556666655555443332 233555555543 3444332 4556778888899999999999
Q ss_pred chHHHHHHHHc--C------CcEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 152 TGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 152 ~G~lt~~La~~--~------~~V~avE~d~~~~~~a~~~~~~-----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
||-++..+.+. . .+|+.+|+++.|+..++++... .+.+.++.+|++++|+++ +.+
T Consensus 111 TGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd------------~s~ 178 (296)
T KOG1540|consen 111 TGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD------------DSF 178 (296)
T ss_pred cchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC------------Ccc
Confidence 99999999875 2 5899999999999999988742 235999999999999876 567
Q ss_pred ceEee
Q 016715 219 AKVVA 223 (384)
Q Consensus 219 d~Vv~ 223 (384)
|....
T Consensus 179 D~yTi 183 (296)
T KOG1540|consen 179 DAYTI 183 (296)
T ss_pred eeEEE
Confidence 77654
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=2.7e-08 Score=100.80 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~ 198 (384)
..+......+...+++.+|.+|||+|||+|..|..++.. +.+|+|+|+++.+++.+++++... ++++++++|+.+
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~ 299 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER 299 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh
Confidence 333444455566778889999999999999999999986 468999999999999999998753 368999999987
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
++.. ..+.||.|+.|.|+
T Consensus 300 l~~~-----------~~~~fD~Vl~DaPC 317 (431)
T PRK14903 300 LTEY-----------VQDTFDRILVDAPC 317 (431)
T ss_pred hhhh-----------hhccCCEEEECCCC
Confidence 6411 12579999999998
No 129
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=3e-08 Score=100.71 Aligned_cols=97 Identities=13% Similarity=0.239 Sum_probs=75.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~ 197 (384)
|..+......++..+.+.+|++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++... .+++++++|+.
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 3333444555666778888999999999999999999986 248999999999999999988754 47999999998
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+++..... ..+.||.|+.|.|.
T Consensus 314 ~~~~~~~~--------~~~~fD~Vl~DaPC 335 (434)
T PRK14901 314 NLLELKPQ--------WRGYFDRILLDAPC 335 (434)
T ss_pred hccccccc--------ccccCCEEEEeCCC
Confidence 76421000 12579999999885
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=3.2e-08 Score=100.79 Aligned_cols=86 Identities=10% Similarity=0.193 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh
Q 016715 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 129 ~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~ 203 (384)
.....+..+.+.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++... .+++++++|+.++..
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-- 315 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP-- 315 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--
Confidence 3444555667778899999999999999988875 358999999999999999988643 378999999987642
Q ss_pred hhhhHHhhhccCCCcceEeeccCc
Q 016715 204 HMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
...||.|+.+.|.
T Consensus 316 -----------~~~fD~Vl~D~Pc 328 (445)
T PRK14904 316 -----------EEQPDAILLDAPC 328 (445)
T ss_pred -----------CCCCCEEEEcCCC
Confidence 1479999999886
No 131
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=9.8e-08 Score=88.01 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEccccc
Q 016715 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (384)
Q Consensus 133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~~~~gD~~~ 198 (384)
.+..+...++.+|||+|||.|..+..|+++|.+|+|||+++.+++.+..... ...+++++++|+.+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 4433444567799999999999999999999999999999999998743211 12478999999998
Q ss_pred cch
Q 016715 199 CHI 201 (384)
Q Consensus 199 ~~~ 201 (384)
++.
T Consensus 109 l~~ 111 (218)
T PRK13255 109 LTA 111 (218)
T ss_pred CCc
Confidence 854
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.74 E-value=5.8e-08 Score=88.97 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred HHHhc-CCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715 134 AAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (384)
Q Consensus 134 l~~l~-~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~ 209 (384)
.+... ..++++|||||||+|.++..+++.. ..|+|||+++ + ...++++++++|+.+....+.+.+-
T Consensus 43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~- 112 (209)
T PRK11188 43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLER- 112 (209)
T ss_pred HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHH-
Confidence 33334 3578899999999999999999873 4899999998 1 1235799999999886421111000
Q ss_pred hhhccCCCcceEeecc
Q 016715 210 ERRKSSSGFAKVVANI 225 (384)
Q Consensus 210 ~~~~~~~~~d~Vv~Nl 225 (384)
...+.+|+|++|+
T Consensus 113 ---~~~~~~D~V~S~~ 125 (209)
T PRK11188 113 ---VGDSKVQVVMSDM 125 (209)
T ss_pred ---hCCCCCCEEecCC
Confidence 1236799999997
No 133
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.74 E-value=1.2e-07 Score=87.13 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEcccc
Q 016715 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFV 197 (384)
Q Consensus 132 ~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~~~~gD~~ 197 (384)
..+..+...++.+|||+|||.|.-+..|+++|.+|+|||+++.+++.+..... ...+++++++|+.
T Consensus 25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred HHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence 34444443466799999999999999999999999999999999998644321 1236899999999
Q ss_pred ccch
Q 016715 198 KCHI 201 (384)
Q Consensus 198 ~~~~ 201 (384)
+++.
T Consensus 105 ~~~~ 108 (213)
T TIGR03840 105 ALTA 108 (213)
T ss_pred CCCc
Confidence 8764
No 134
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.74 E-value=5e-08 Score=89.28 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~ 203 (384)
......+++.+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++....+++.++.+|+.+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 3455667777766678899999999999999999874 3899999999999999988753357899999998876432
Q ss_pred hhhhHHhhhccCCCcceEeeccCc
Q 016715 204 HMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+.+|+|+++..+
T Consensus 105 ------------~~~D~i~~~~~~ 116 (223)
T TIGR01934 105 ------------NSFDAVTIAFGL 116 (223)
T ss_pred ------------CcEEEEEEeeee
Confidence 579999876543
No 135
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.74 E-value=3.5e-08 Score=89.12 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=61.9
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc-cc-hhhhhhh
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CH-IRSHMLS 207 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~-~~-~~~~~~~ 207 (384)
+.+.+.+. ++++|||||||+|.++..+++. +..++|+|+++.+++.++++ +++++++|+.+ ++ +.
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~----- 72 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFP----- 72 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccC-----
Confidence 34555443 5679999999999999999875 56899999999999988652 57888999865 22 22
Q ss_pred HHhhhccCCCcceEeeccCcccc
Q 016715 208 LFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
.+.||.|++|.+++..
T Consensus 73 -------~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 73 -------DKSFDYVILSQTLQAT 88 (194)
T ss_pred -------CCCcCEEEEhhHhHcC
Confidence 2579999999776544
No 136
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=5.6e-08 Score=90.21 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccc
Q 016715 127 SEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVK 198 (384)
Q Consensus 127 ~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~ 198 (384)
+++++.+++.++. ..+..+||+|||+|+.+..++.. ...|+|||.++.++..|.+|... .+.+.+++-+...
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 5566677766643 24568999999999999999986 45899999999999999998764 3578888654433
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~ 239 (384)
--+..+- ...+..|.+++|+||--..+ ..++.+
T Consensus 211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD-~~~l~~ 243 (328)
T KOG2904|consen 211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD-NRQLKP 243 (328)
T ss_pred ccccccc-------cccCceeEEecCCCcccccc-hhhcCc
Confidence 2111100 02368899999999977777 555554
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.72 E-value=5.8e-08 Score=90.50 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~ 197 (384)
...+.....+...+...++++|||||||+|+.+..++.. +.+|+++|+|+.+++.|+++++.. ++++++.||+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 345555444444455556789999999999999888875 459999999999999999998653 37999999998
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeecc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
+.... +... ...+.||.|+.+.
T Consensus 131 ~~L~~-----l~~~-~~~~~fD~VfiDa 152 (234)
T PLN02781 131 SALDQ-----LLNN-DPKPEFDFAFVDA 152 (234)
T ss_pred HHHHH-----HHhC-CCCCCCCEEEECC
Confidence 75211 0000 0125799999885
No 138
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-07 Score=84.84 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=92.3
Q ss_pred CC-CcccCCHHHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhcC------
Q 016715 119 LG-QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFAS------ 185 (384)
Q Consensus 119 ~g-q~fl~~~~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~~------ 185 (384)
.| .-.+.-|.+.+.+++.|. +.+|.+.||+|+|+|+||..++.. |..++|||..+++++.+++++..
T Consensus 57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e 136 (237)
T KOG1661|consen 57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSE 136 (237)
T ss_pred cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCch
Confidence 35 335678999999999998 889999999999999999988865 44569999999999999998752
Q ss_pred ------CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCccccHHHHHHhcccCCCe
Q 016715 186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIF 244 (384)
Q Consensus 186 ------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~i~~~il~~L~~~g~~~ 244 (384)
.+++.++.||....-.+. .++|.|... -.-.+..+++.+|+++|+++
T Consensus 137 ~~~~~~~~~l~ivvGDgr~g~~e~------------a~YDaIhvGAaa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 137 SSSKLKRGELSIVVGDGRKGYAEQ------------APYDAIHVGAAASELPQELLDQLKPGGRLL 190 (237)
T ss_pred hhhhhccCceEEEeCCccccCCcc------------CCcceEEEccCccccHHHHHHhhccCCeEE
Confidence 137889999998875433 678988543 34467789999999999864
No 139
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.70 E-value=1.2e-07 Score=87.97 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhh
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~ 203 (384)
.++..++.+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.++++.... .++.++.+|+.+.+..
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 110 (233)
T PRK05134 32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE- 110 (233)
T ss_pred hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-
Confidence 34444556666665667889999999999999999998889999999999999999876532 2577888887765421
Q ss_pred hhhhHHhhhccCCCcceEeeccC
Q 016715 204 HMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
..+.||+|+++..
T Consensus 111 ----------~~~~fD~Ii~~~~ 123 (233)
T PRK05134 111 ----------HPGQFDVVTCMEM 123 (233)
T ss_pred ----------cCCCccEEEEhhH
Confidence 1257999987643
No 140
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.67 E-value=6.1e-08 Score=103.91 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=73.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~ 197 (384)
+..|.+..+..+..+. ++++|||+|||+|.++..++..|+ +|++||+|+.+++.+++++..+ ++++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 3444444455544433 478999999999999999999876 6999999999999999998643 36899999987
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
++... ....||+||.|+||...
T Consensus 600 ~~l~~-----------~~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 600 AWLKE-----------AREQFDLIFIDPPTFSN 621 (702)
T ss_pred HHHHH-----------cCCCcCEEEECCCCCCC
Confidence 64211 12579999999998543
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.67 E-value=1.3e-07 Score=87.11 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=73.5
Q ss_pred CcccCCCcccCCHHHHHHHHHHhcC----CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--C
Q 016715 115 PRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q 188 (384)
Q Consensus 115 ~~~~~gq~fl~~~~~~~~il~~l~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~ 188 (384)
+...++.+-..++..++.+.+.+.. ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.++.++...+ +
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 94 (224)
T TIGR01983 15 PNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLK 94 (224)
T ss_pred CCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 3333333333455556666666652 347799999999999999999888899999999999999998876432 5
Q ss_pred eEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 189 v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
+.+..+|+.+.+... .+.+|+|+++-
T Consensus 95 ~~~~~~d~~~~~~~~-----------~~~~D~i~~~~ 120 (224)
T TIGR01983 95 IEYRCTSVEDLAEKG-----------AKSFDVVTCME 120 (224)
T ss_pred eEEEeCCHHHhhcCC-----------CCCccEEEehh
Confidence 888889888765321 25799998864
No 142
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.66 E-value=5.2e-08 Score=96.23 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh-
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS- 203 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~- 203 (384)
..+++.++++++..++ .|||+.||.|++|..|+..+.+|+|||+++.+++.|++++..+ .|++++.+++.++...-
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA 261 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence 4455555666666655 8999999999999999999999999999999999999998754 49999999887653210
Q ss_pred ---hhhhHHhhhccCCCcceEeeccCccccHH-HHHHhc
Q 016715 204 ---HMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLL 238 (384)
Q Consensus 204 ---~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~-il~~L~ 238 (384)
.+.....-......+|.|+.+||..-..+ ++..+.
T Consensus 262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 262 KAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp CS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 00000000001135799999999965544 455443
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=1.1e-07 Score=96.24 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=72.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC-Ce--EEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QL--KVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~-~v--~~~~gD~~ 197 (384)
|..++.....++..+++.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...+ .+ .+..+|..
T Consensus 220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~ 299 (426)
T TIGR00563 220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR 299 (426)
T ss_pred EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 3334455667777888889999999999999999999986 3699999999999999999987543 23 34667765
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
..+... ....||.|+.+.|..
T Consensus 300 ~~~~~~----------~~~~fD~VllDaPcS 320 (426)
T TIGR00563 300 GPSQWA----------ENEQFDRILLDAPCS 320 (426)
T ss_pred cccccc----------cccccCEEEEcCCCC
Confidence 543200 125799999998864
No 144
>PRK00811 spermidine synthase; Provisional
Probab=98.65 E-value=1.4e-07 Score=90.44 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=61.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhc-------CCCCeEEEEccccccchhhhhhhHHhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA-------SIDQLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~-------~~~~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
.+++||+||||+|.++..+++. + .+|++||+|+.+++.+++.+. ..++++++.+|+.++-..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--------- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---------
Confidence 4679999999999999999987 4 489999999999999998764 246899999999875321
Q ss_pred hccCCCcceEeecc
Q 016715 212 RKSSSGFAKVVANI 225 (384)
Q Consensus 212 ~~~~~~~d~Vv~Nl 225 (384)
..+.||+|++++
T Consensus 147 --~~~~yDvIi~D~ 158 (283)
T PRK00811 147 --TENSFDVIIVDS 158 (283)
T ss_pred --CCCcccEEEECC
Confidence 135799999985
No 145
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.61 E-value=2.4e-07 Score=80.10 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=55.5
Q ss_pred HHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHH
Q 016715 131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (384)
Q Consensus 131 ~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~ 209 (384)
+.+..... ..++.+|||||||+|.++..+++.+.+|+++|+++.+++. .++.....+.......
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~------- 75 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFP------- 75 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCH-------
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhcc-------
Confidence 33333343 4578899999999999999999999999999999999988 1223333322322222
Q ss_pred hhhccCCCcceEeeccCccc
Q 016715 210 ERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i 229 (384)
.+.||+|+++--++.
T Consensus 76 -----~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 76 -----DGSFDLIICNDVLEH 90 (161)
T ss_dssp -----SSSEEEEEEESSGGG
T ss_pred -----ccchhhHhhHHHHhh
Confidence 368999998755433
No 146
>PTZ00146 fibrillarin; Provisional
Probab=98.59 E-value=2.3e-07 Score=88.47 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHHH---HhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc-
Q 016715 128 EINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH- 200 (384)
Q Consensus 128 ~~~~~il~---~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~- 200 (384)
.+.+.|+. .+.+.++++|||+|||+|+.|..+++.. ..|+|||+++++.+.+.......+|+..+.+|+....
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK 195 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh
Confidence 44555544 3456789999999999999999999982 4799999999877655555433368999999986421
Q ss_pred hhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 201 IRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
... ..+.+|+|+++...
T Consensus 196 y~~----------~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 196 YRM----------LVPMVDVIFADVAQ 212 (293)
T ss_pred hhc----------ccCCCCEEEEeCCC
Confidence 110 12468999998753
No 147
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.59 E-value=1.7e-07 Score=86.37 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=65.3
Q ss_pred CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
++|||||||+|..+..+++. +.+|+|+|+++.+++.+++++.. .++++++.+|+.+.+++ +.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-------------~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-------------DT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-------------CC
Confidence 37999999999999999887 36899999999999999998754 24789999998765432 46
Q ss_pred cceEeeccCcc-------ccHHHHHHhcccCCC
Q 016715 218 FAKVVANIPFN-------ISTDVIKQLLPMGDI 243 (384)
Q Consensus 218 ~d~Vv~NlPy~-------i~~~il~~L~~~g~~ 243 (384)
||+|+++-.++ ....+...|+++|.+
T Consensus 68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 100 (224)
T smart00828 68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHL 100 (224)
T ss_pred CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEE
Confidence 89998753321 122334455666544
No 148
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.57 E-value=2.6e-07 Score=88.63 Aligned_cols=93 Identities=13% Similarity=0.269 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (384)
.|-+++.+++.+.+.+++.++|.+||.|..|..+++.. .+|+|+|.|+.+++.+++++...++++++++|+.++...
T Consensus 4 ~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 4 IPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV 83 (296)
T ss_pred ccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH
Confidence 35678899999998899999999999999999999883 689999999999999998875545899999999987422
Q ss_pred hhhhhHHhhhccCCCcceEeeccC
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
. . .....+|.|+.|+-
T Consensus 84 l------~--~~~~~vDgIl~DLG 99 (296)
T PRK00050 84 L------A--EGLGKVDGILLDLG 99 (296)
T ss_pred H------H--cCCCccCEEEECCC
Confidence 1 0 00126888888763
No 149
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.57 E-value=2.4e-07 Score=81.23 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=75.3
Q ss_pred ChHHHHHHHHhCCCCCcccCCCcccCCHHHHHHHHHHhc---CC-CCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCH
Q 016715 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---VQ-EGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQ 173 (384)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~---~~-~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~ 173 (384)
.|...++-+++++....-|||.. ...++++.+.+... +. ..++|||+|||.|.+...|++.|. +++|||.++
T Consensus 24 ~Y~~El~Nfr~hgd~GEvWFg~~--ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~ 101 (227)
T KOG1271|consen 24 AYELELTNFREHGDEGEVWFGED--AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE 101 (227)
T ss_pred HHHHHHhhcccCCCccceecCCc--HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH
Confidence 34555666677777888899852 23455555555554 22 345999999999999999999865 699999999
Q ss_pred HHHHHHHHHhcCC--C-CeEEEEccccccchh
Q 016715 174 HMVGLVRERFASI--D-QLKVLQEDFVKCHIR 202 (384)
Q Consensus 174 ~~~~~a~~~~~~~--~-~v~~~~gD~~~~~~~ 202 (384)
.+++.|+...+.. + .|++.+.|+.+.++.
T Consensus 102 ~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~ 133 (227)
T KOG1271|consen 102 KAVELAQNIAERDGFSNEIRFQQLDITDPDFL 133 (227)
T ss_pred HHHHHHHHHHHhcCCCcceeEEEeeccCCccc
Confidence 9999988776543 3 499999999886543
No 150
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.56 E-value=1.6e-07 Score=84.71 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHhcCCC--CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccc-cch
Q 016715 125 LNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHI 201 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~--~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~-~~~ 201 (384)
++.++.++.++.+.... ..-|||||||+|..+..|.+.|...+|+|+++.|++.|.++.-. -.++.+|.-+ +++
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPF 108 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCC
Confidence 45677778888777655 67899999999999999999999999999999999999864211 2467777654 343
Q ss_pred hhhhhhHHhhhccCCCcceEee
Q 016715 202 RSHMLSLFERRKSSSGFAKVVA 223 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~ 223 (384)
. .+.||.+|+
T Consensus 109 r------------pGtFDg~IS 118 (270)
T KOG1541|consen 109 R------------PGTFDGVIS 118 (270)
T ss_pred C------------CCccceEEE
Confidence 3 378888875
No 151
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.5e-07 Score=80.17 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=63.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~--~~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
....++|||||+|..+..|++. + ....+.|+++.+++.-.+.+..+. ++++++.|....-. .+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~-------------~~ 109 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR-------------NE 109 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc-------------cC
Confidence 3578999999999999999987 3 467899999999998877765443 78889998877532 26
Q ss_pred CcceEeeccCccccH
Q 016715 217 GFAKVVANIPFNIST 231 (384)
Q Consensus 217 ~~d~Vv~NlPy~i~~ 231 (384)
+.|+++-|+||-.++
T Consensus 110 ~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTS 124 (209)
T ss_pred CccEEEECCCcCcCC
Confidence 789999999996654
No 152
>PRK04457 spermidine synthase; Provisional
Probab=98.53 E-value=5.8e-07 Score=85.23 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=65.1
Q ss_pred HHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchh
Q 016715 129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 129 ~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~ 202 (384)
..+.|+..+. ..++.+|||||||+|.++..+++. +.+|++||+|+.+++.+++.+.. .++++++.+|+.++-..
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 3444444333 335678999999999999999876 46899999999999999998753 25899999998775221
Q ss_pred hhhhhHHhhhccCCCcceEeecc
Q 016715 203 SHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
..+.+|+|+.|.
T Consensus 133 -----------~~~~yD~I~~D~ 144 (262)
T PRK04457 133 -----------HRHSTDVILVDG 144 (262)
T ss_pred -----------CCCCCCEEEEeC
Confidence 125789999763
No 153
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.52 E-value=3.1e-07 Score=82.54 Aligned_cols=75 Identities=17% Similarity=0.369 Sum_probs=53.4
Q ss_pred cCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 138 AVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.+.++++|||+|||+|.++..++... .+|+++|+++.+ ..++++++++|+.+.+..+..... ..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----VG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----hC
Confidence 34678999999999999999998763 379999999864 125788999998775421110000 02
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+.+|+|++|.
T Consensus 96 ~~~~D~V~~~~ 106 (188)
T TIGR00438 96 DDKVDVVMSDA 106 (188)
T ss_pred CCCccEEEcCC
Confidence 25699999874
No 154
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.52 E-value=3.8e-07 Score=89.37 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC--------------------------------------
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-------------------------------------- 164 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-------------------------------------- 164 (384)
--..+.++..|+...+..++..++|-=||+|++..+.|-.+.
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 346788999999999999889999999999999999887753
Q ss_pred ---cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 165 ---TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 165 ---~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
.++|+|+|+.+++.|+.|.... +-|++.++|+..+..+. ..+|+||+|+||.
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~------------~~~gvvI~NPPYG 310 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL------------EEYGVVISNPPYG 310 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC------------CcCCEEEeCCCcc
Confidence 2779999999999999998754 37999999999876431 4789999999993
No 155
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.51 E-value=4.1e-07 Score=97.58 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHc----------------------------------------
Q 016715 124 MLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA---------------------------------------- 162 (384)
Q Consensus 124 l~~~~~~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~---------------------------------------- 162 (384)
-..+.+++.|+...+. .++..++|.+||+|++..+.+..
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3568888999988877 56789999999999999877652
Q ss_pred ----CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 163 ----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 163 ----~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
..+++|+|+|+.+++.|+.++...+ .+.+.++|+.+++... ..+.+|+||+|+||.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg 314 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYG 314 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCc
Confidence 1269999999999999999987543 5899999998876432 124689999999994
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.51 E-value=2.8e-07 Score=83.64 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcCcchHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhc
Q 016715 139 VQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~--~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
..+++.|+|..||.|.++..+++ .++.|+|+|++|..++.+++++..+ +++.++++|+.++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~------------ 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP------------ 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC------------
Confidence 45789999999999999999999 5678999999999999999988754 378999999988753
Q ss_pred cCCCcceEeeccCccc
Q 016715 214 SSSGFAKVVANIPFNI 229 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy~i 229 (384)
...+|.|+.|+|...
T Consensus 167 -~~~~drvim~lp~~~ 181 (200)
T PF02475_consen 167 -EGKFDRVIMNLPESS 181 (200)
T ss_dssp -TT-EEEEEE--TSSG
T ss_pred -ccccCEEEECChHHH
Confidence 157899999999643
No 157
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.51 E-value=2.5e-07 Score=81.00 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
+.|+|+.||.|.-|..+|+...+|+|||+|+..++.|+.++.-. +++.+++||+.++..... ....+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~---------~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK---------SNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc---------cccccc
Confidence 36999999999999999999999999999999999999998754 389999999998643210 111279
Q ss_pred eEeeccCcccc
Q 016715 220 KVVANIPFNIS 230 (384)
Q Consensus 220 ~Vv~NlPy~i~ 230 (384)
.|+.++|+.-.
T Consensus 72 ~vFlSPPWGGp 82 (163)
T PF09445_consen 72 VVFLSPPWGGP 82 (163)
T ss_dssp EEEE---BSSG
T ss_pred EEEECCCCCCc
Confidence 99999998543
No 158
>PRK01581 speE spermidine synthase; Validated
Probab=98.50 E-value=8.1e-07 Score=86.98 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH--hc-------CCCCeE
Q 016715 125 LNSEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLK 190 (384)
Q Consensus 125 ~~~~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~--~~-------~~~~v~ 190 (384)
.|+.+...++-+. ......+||+||||+|...+.+++.. .+|++||+|+.+++.|++. +. ..++++
T Consensus 131 ~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~ 210 (374)
T PRK01581 131 VDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVN 210 (374)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceE
Confidence 3455544444432 23345799999999999999999874 5899999999999999962 11 246999
Q ss_pred EEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 191 ~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
++.+|+.++-.. ..+.||+|+.++|-
T Consensus 211 vvi~Da~~fL~~-----------~~~~YDVIIvDl~D 236 (374)
T PRK01581 211 VHVCDAKEFLSS-----------PSSLYDVIIIDFPD 236 (374)
T ss_pred EEECcHHHHHHh-----------cCCCccEEEEcCCC
Confidence 999999985322 23579999999764
No 159
>PLN02366 spermidine synthase
Probab=98.50 E-value=6.8e-07 Score=86.51 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhc---CCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcc
Q 016715 127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQED 195 (384)
Q Consensus 127 ~~~~~~il~~l~---~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD 195 (384)
......++.++. ....++||+||||.|.+...+++.. .+|+.||+|+.+++.+++.+.. .++++++.+|
T Consensus 74 e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 74 ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 344555655543 2456799999999999999999873 4899999999999999997642 3589999999
Q ss_pred ccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+.++-... ..+.||+|+.+.+-
T Consensus 154 a~~~l~~~----------~~~~yDvIi~D~~d 175 (308)
T PLN02366 154 GVEFLKNA----------PEGTYDAIIVDSSD 175 (308)
T ss_pred HHHHHhhc----------cCCCCCEEEEcCCC
Confidence 87643210 12579999988643
No 160
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.49 E-value=1.3e-08 Score=81.55 Aligned_cols=76 Identities=28% Similarity=0.369 Sum_probs=46.7
Q ss_pred EEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (384)
Q Consensus 146 LEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (384)
||||||+|.++..+++. ..+++++|+|+.|++.+++++.... +...+..+..+..... ..+.||.|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD----------PPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC----------C----SEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc----------ccccccee
Confidence 79999999999999998 6799999999999988888776533 3344444433322111 11489999
Q ss_pred eeccCccccH
Q 016715 222 VANIPFNIST 231 (384)
Q Consensus 222 v~NlPy~i~~ 231 (384)
+++-.++...
T Consensus 71 ~~~~vl~~l~ 80 (99)
T PF08242_consen 71 VASNVLHHLE 80 (99)
T ss_dssp EEE-TTS--S
T ss_pred hhhhhHhhhh
Confidence 9876655443
No 161
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.49 E-value=3.6e-07 Score=86.95 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~ 205 (384)
.+.+++....-.++.|||+|||+|.++...++.|+ +|++||.+ +|.++|++.++.+ +++.++.|.++++.+++
T Consensus 166 ~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-- 242 (517)
T KOG1500|consen 166 QRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-- 242 (517)
T ss_pred HHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch--
Confidence 34455544445688999999999999999999977 89999976 7889999887754 48999999999998763
Q ss_pred hhHHhhhccCCCcceEeecc
Q 016715 206 LSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~Nl 225 (384)
..|+||+.+
T Consensus 243 -----------k~DviISEP 251 (517)
T KOG1500|consen 243 -----------KVDVIISEP 251 (517)
T ss_pred -----------hccEEEecc
Confidence 678888864
No 162
>PLN02476 O-methyltransferase
Probab=98.49 E-value=7.4e-07 Score=84.68 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~ 197 (384)
...+...+.+...+...+.++|||||+|+|+.|..++.. +.+|+++|.++..++.|+++++.. ++++++.||+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 456666666666666667889999999999999999974 457999999999999999998753 48999999998
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+..... ... ...+.||.|+.+.+-
T Consensus 181 e~L~~l-----~~~-~~~~~FD~VFIDa~K 204 (278)
T PLN02476 181 ESLKSM-----IQN-GEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHH-----Hhc-ccCCCCCEEEECCCH
Confidence 753210 000 012579999987653
No 163
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.48 E-value=1.1e-06 Score=84.97 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=53.4
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC-CC--CeEEEEcccccc
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKC 199 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~-~~--~v~~~~gD~~~~ 199 (384)
+.|++.+. ++.+|||+|||+|..|..|++. +.+|+++|+|++|++.+++++.. .+ ++..+++|+.+.
T Consensus 55 ~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 55 DEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 34444443 5678999999999999999987 47999999999999999988753 23 467789999763
No 164
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.48 E-value=4.6e-07 Score=86.01 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCcchH----HHHHHHHc-------CCcEEEEeCCHHHHHHHHHHhc------C-----------------
Q 016715 140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFA------S----------------- 185 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~----lt~~La~~-------~~~V~avE~d~~~~~~a~~~~~------~----------------- 185 (384)
.++.+|||+|||+|. ++..+++. +.+|+|+|+|+.|++.|++..- .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345699999999996 45555553 2489999999999999997531 0
Q ss_pred ------CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec
Q 016715 186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 186 ------~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
..+|++.++|+.+.+++. +.||+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~------------~~fD~I~cr 210 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPL------------GDFDLIFCR 210 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCcc------------CCCCEEEec
Confidence 026889999998876432 579999984
No 165
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.46 E-value=8.3e-07 Score=69.41 Aligned_cols=75 Identities=27% Similarity=0.414 Sum_probs=59.9
Q ss_pred EEEEEcCcchHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715 144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (384)
+|+|+|||.|.++..++. .+.+++++|+++..+..+++... ...+++++.+|+.+.... ..+.+|.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-----------ADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-----------cCCceEE
Confidence 489999999999999998 46699999999999998884332 224789999998886531 1257999
Q ss_pred EeeccCccc
Q 016715 221 VVANIPFNI 229 (384)
Q Consensus 221 Vv~NlPy~i 229 (384)
|+.|.+++.
T Consensus 70 i~~~~~~~~ 78 (107)
T cd02440 70 IISDPPLHH 78 (107)
T ss_pred EEEccceee
Confidence 999998865
No 166
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.45 E-value=1.3e-06 Score=82.96 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHH--HHhc-CCCCeEEEEccccccchhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR--ERFA-SIDQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~--~~~~-~~~~v~~~~gD~~~~~~~~~~ 205 (384)
-+++..++..-.|++|||||||.|+.+..|+.+|+ .|+|+|.+.....+.+ +++. ....+..+---+++++.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~---- 179 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN---- 179 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----
Confidence 34567777666899999999999999999999987 6999999988766533 2222 22233333233444442
Q ss_pred hhHHhhhccCCCcceEeec-cCccccHHH------HHHhcccCCCeeEEE
Q 016715 206 LSLFERRKSSSGFAKVVAN-IPFNISTDV------IKQLLPMGDIFSEVV 248 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~N-lPy~i~~~i------l~~L~~~g~~~~~~~ 248 (384)
.+.||.|++- .=||..+++ ...|.++|.++-+..
T Consensus 180 ---------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 180 ---------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ---------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 2679999874 666666554 335566777665443
No 167
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.45 E-value=2.3e-07 Score=84.33 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=87.8
Q ss_pred HhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHh-cC---CCCeEEEEccccccchhhhhhhHHh
Q 016715 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-AS---IDQLKVLQEDFVKCHIRSHMLSLFE 210 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~-~~---~~~v~~~~gD~~~~~~~~~~~~~~~ 210 (384)
...++.|.+|||...|.|+.++..+++|+ +|+.+|.|+..++.|+-|- .. ..+++++.||+.++-..
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-------- 200 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-------- 200 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc--------
Confidence 34566799999999999999999999999 9999999999999887542 11 13789999999885321
Q ss_pred hhccCCCcceEeeccCc-cccH---------HHHHHhcccCCCeeEE--------EEEeeHHHHHHHh
Q 016715 211 RRKSSSGFAKVVANIPF-NIST---------DVIKQLLPMGDIFSEV--------VLLLQEETALRLV 260 (384)
Q Consensus 211 ~~~~~~~~d~Vv~NlPy-~i~~---------~il~~L~~~g~~~~~~--------~~~~qke~a~rl~ 260 (384)
.....||.||.++|. .+.. ++.+-|+++|++|... ..-+|+++++||-
T Consensus 201 --~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 201 --FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred --CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 123679999999995 4443 4456777888887543 3567888888886
No 168
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.43 E-value=1.7e-06 Score=83.74 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccch
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI 201 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~ 201 (384)
...+.+++.+...++.+|||||||+|.++..++++ +.+++++|. +.+++.+++++... ++++++.+|+.+.++
T Consensus 136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence 34566777788888899999999999999999988 458999997 78999998877642 479999999987543
No 169
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.42 E-value=1.2e-06 Score=81.14 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=59.8
Q ss_pred HHHHHHHhcC-CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHH-HHHHhcCCCCeE-EEEccccccchhhhh
Q 016715 130 NDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGL-VRERFASIDQLK-VLQEDFVKCHIRSHM 205 (384)
Q Consensus 130 ~~~il~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~-a~~~~~~~~~v~-~~~gD~~~~~~~~~~ 205 (384)
++.+++...+ .++..|||+|||+|.+|..+++.|+ +|+|+|+++.|+.. +++ ++++. +...|+....+.+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCCHhHcC
Confidence 4455555554 3677999999999999999999965 79999999987765 332 23433 333344443333210
Q ss_pred hhHHhhhccCCCcceEeeccCccccHHHHHHhcc
Q 016715 206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~ 239 (384)
. ....+|+++..+-+ +.+++...|.+
T Consensus 139 ~-------d~~~~DvsfiS~~~-~l~~i~~~l~~ 164 (228)
T TIGR00478 139 P-------DFATFDVSFISLIS-ILPELDLLLNP 164 (228)
T ss_pred C-------CceeeeEEEeehHh-HHHHHHHHhCc
Confidence 0 11356666654433 34455555554
No 170
>PRK03612 spermidine synthase; Provisional
Probab=98.42 E-value=7.5e-07 Score=92.44 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH--hc-------CCCCeEEEEccccccchhhhhhhH
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~--~~-------~~~~v~~~~gD~~~~~~~~~~~~~ 208 (384)
.++++|||||||+|..+..++++. .+|++||+|+++++.++++ +. ++++++++.+|+.+.-..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~------ 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK------ 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh------
Confidence 356799999999999999999874 5999999999999999983 21 235899999999874211
Q ss_pred HhhhccCCCcceEeeccCcc
Q 016715 209 FERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy~ 228 (384)
..+.||+|++|+|..
T Consensus 370 -----~~~~fDvIi~D~~~~ 384 (521)
T PRK03612 370 -----LAEKFDVIIVDLPDP 384 (521)
T ss_pred -----CCCCCCEEEEeCCCC
Confidence 235899999998753
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.37 E-value=1.1e-06 Score=80.18 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
....+|||||||+|+.|..+++. +.+|+++|+|+...+.|++.+... ++++++.||+.+.-... ... .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l-----~~~-~ 117 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL-----AND-G 117 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH-----HHT-T
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH-----Hhc-c
Confidence 35679999999999999999985 579999999999999999988743 38999999998853211 000 0
Q ss_pred cCCCcceEeeccC
Q 016715 214 SSSGFAKVVANIP 226 (384)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (384)
..+.||.|+.+-.
T Consensus 118 ~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 118 EEGQFDFVFIDAD 130 (205)
T ss_dssp TTTSEEEEEEEST
T ss_pred CCCceeEEEEccc
Confidence 1257999998754
No 172
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.37 E-value=2.3e-06 Score=81.51 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
.+++|||||||+|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.+.-..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~---------- 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD---------- 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----------
Confidence 45699999999999999998874 4899999999999999987632 24788999888764211
Q ss_pred ccCCCcceEeeccCc
Q 016715 213 KSSSGFAKVVANIPF 227 (384)
Q Consensus 213 ~~~~~~d~Vv~NlPy 227 (384)
..+.||+||.+.+.
T Consensus 142 -~~~~yDvIi~D~~~ 155 (270)
T TIGR00417 142 -TENTFDVIIVDSTD 155 (270)
T ss_pred -CCCCccEEEEeCCC
Confidence 12579999998763
No 173
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.36 E-value=9.6e-07 Score=79.01 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCEEEEEcCcchHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcCC--CCeE-EEEccccccc-hhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCH-IRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~~~--~~v~-~~~gD~~~~~-~~~~~~~~~~~~~~~~ 216 (384)
...|||||||||.--...-- .+..|+++|.++.|-+++.+.++.. .++. ++++|+++++ +++ +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d------------~ 144 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLAD------------G 144 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccccc------------C
Confidence 34689999999998877654 3789999999999999999887643 3666 9999999987 333 6
Q ss_pred CcceEeeccCc
Q 016715 217 GFAKVVANIPF 227 (384)
Q Consensus 217 ~~d~Vv~NlPy 227 (384)
++|.||+-+-.
T Consensus 145 s~DtVV~TlvL 155 (252)
T KOG4300|consen 145 SYDTVVCTLVL 155 (252)
T ss_pred CeeeEEEEEEE
Confidence 89999886543
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.36 E-value=1.2e-06 Score=84.52 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
-.++.|||+|||+|.++...|+.|+ +|+|||.+.-+ +.+.+.+..++ -+++++|.++++.++.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~------------ 125 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPV------------ 125 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCc------------
Confidence 4688999999999999999999987 89999987544 88887766442 5899999999986652
Q ss_pred CCcceEeec
Q 016715 216 SGFAKVVAN 224 (384)
Q Consensus 216 ~~~d~Vv~N 224 (384)
++.|+||+-
T Consensus 126 eKVDiIvSE 134 (346)
T KOG1499|consen 126 EKVDIIVSE 134 (346)
T ss_pred cceeEEeeh
Confidence 578999874
No 175
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.36 E-value=3.7e-06 Score=77.65 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeE
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK 190 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~ 190 (384)
.++.+.+.+ ..+...++.+||..|||.|.-...|+++|.+|+|+|+++..++.+.+... ...+++
T Consensus 28 pnp~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 455555554 33444567899999999999999999999999999999999999866321 124789
Q ss_pred EEEccccccch
Q 016715 191 VLQEDFVKCHI 201 (384)
Q Consensus 191 ~~~gD~~~~~~ 201 (384)
++++|+.+++.
T Consensus 107 ~~~gD~f~l~~ 117 (226)
T PRK13256 107 IYVADIFNLPK 117 (226)
T ss_pred EEEccCcCCCc
Confidence 99999999864
No 176
>PRK10742 putative methyltransferase; Provisional
Probab=98.36 E-value=1.7e-06 Score=80.37 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCCC--EEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-----------CCeEEEEcccc
Q 016715 131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV 197 (384)
Q Consensus 131 ~~il~~l~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-----------~~v~~~~gD~~ 197 (384)
+.|++.++++++. +|||.-+|+|..+..++.+|++|+++|.++.+...++..+... .+++++++|..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4577778888887 9999999999999999999999999999999999888776531 36889999988
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
++.-. ....||+|+.++||-.
T Consensus 156 ~~L~~-----------~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTD-----------ITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhh-----------CCCCCcEEEECCCCCC
Confidence 76422 1247999999999944
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.36 E-value=2.7e-06 Score=77.94 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEE-cccccc
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-EDFVKC 199 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~-gD~~~~ 199 (384)
+.....+...+.....++|||||++.|+.+..|+.. ..+++++|+++++++.|+++++..+ .++++. ||+++.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 555555555566667889999999999999999985 3589999999999999999997543 688888 588875
Q ss_pred chhhhhhhHHhhhccCCCcceEeec
Q 016715 200 HIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
-... ..+.||.||.+
T Consensus 125 l~~~----------~~~~fDliFID 139 (219)
T COG4122 125 LSRL----------LDGSFDLVFID 139 (219)
T ss_pred HHhc----------cCCCccEEEEe
Confidence 4321 23789999975
No 178
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.35 E-value=2.4e-06 Score=85.12 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=75.4
Q ss_pred cccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccc
Q 016715 122 HYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF 196 (384)
Q Consensus 122 ~fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~ 196 (384)
|.-.+..+...+++.+... ++.+|||++||+|.++..++.. + .+|+++|+++.+++.++++++.+ +++++.++|+
T Consensus 37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da 116 (382)
T PRK04338 37 RMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA 116 (382)
T ss_pred cccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence 3444556666666666533 3468999999999999999876 4 38999999999999999998643 3677899998
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHHH
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~ 236 (384)
.++... .+.||+|+.|+| ....+.+..
T Consensus 117 ~~~l~~------------~~~fD~V~lDP~-Gs~~~~l~~ 143 (382)
T PRK04338 117 NALLHE------------ERKFDVVDIDPF-GSPAPFLDS 143 (382)
T ss_pred HHHHhh------------cCCCCEEEECCC-CCcHHHHHH
Confidence 664211 146999999975 555566544
No 179
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=3.1e-06 Score=82.43 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=76.2
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhh
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~ 206 (384)
.++++... +|.+|+|..||-|.++..+|..|+. |+|+|++|..++.+++++..+. .+..++||+.++....
T Consensus 180 ~Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--- 254 (341)
T COG2520 180 ARVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--- 254 (341)
T ss_pred HHHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---
Confidence 34555443 5899999999999999999999875 9999999999999999987553 4889999999986532
Q ss_pred hHHhhhccCCCcceEeeccCcc---ccHHHHHHhcccC
Q 016715 207 SLFERRKSSSGFAKVVANIPFN---ISTDVIKQLLPMG 241 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~---i~~~il~~L~~~g 241 (384)
+.+|.|+.|+|.. .....+..+..+|
T Consensus 255 ---------~~aDrIim~~p~~a~~fl~~A~~~~k~~g 283 (341)
T COG2520 255 ---------GVADRIIMGLPKSAHEFLPLALELLKDGG 283 (341)
T ss_pred ---------ccCCEEEeCCCCcchhhHHHHHHHhhcCc
Confidence 5789999999974 3334455555533
No 180
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.29 E-value=2.8e-06 Score=78.35 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------CCCCeEE
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKV 191 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--------------~~~~v~~ 191 (384)
+|.+.+. ++.+...++.+||..|||.|.-...|+++|.+|+|+|+++.+++.+.+... ..++|++
T Consensus 23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 4444444 444666777899999999999999999999999999999999999844321 1236899
Q ss_pred EEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (384)
Q Consensus 192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv 222 (384)
.+||+.+++... .+.||.|+
T Consensus 102 ~~gDfF~l~~~~-----------~g~fD~iy 121 (218)
T PF05724_consen 102 YCGDFFELPPED-----------VGKFDLIY 121 (218)
T ss_dssp EES-TTTGGGSC-----------HHSEEEEE
T ss_pred EEcccccCChhh-----------cCCceEEE
Confidence 999999987543 14688886
No 181
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=4.6e-06 Score=83.88 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~ 204 (384)
+-+...+=++++...+..+||+.||||.++..+++...+|+|||+++..++.|+.+...++ |.++++|-++++-...
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl- 447 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSL- 447 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchh-
Confidence 4445556667788888999999999999999999999999999999999999999987654 9999999777653221
Q ss_pred hhhHHhhhccCCCcc-eEeeccCccc-cHHHHHHhcccC
Q 016715 205 MLSLFERRKSSSGFA-KVVANIPFNI-STDVIKQLLPMG 241 (384)
Q Consensus 205 ~~~~~~~~~~~~~~d-~Vv~NlPy~i-~~~il~~L~~~g 241 (384)
+.+ ..+.-+ ++|.|+|..- ...++..|....
T Consensus 448 ~~~------~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 448 LTP------CCDSETLVAIIDPPRKGLHMKVIKALRAYK 480 (534)
T ss_pred ccc------CCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence 100 112234 6788999843 344555665543
No 182
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.17 E-value=2.7e-06 Score=74.96 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=54.9
Q ss_pred CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchh
Q 016715 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~ 202 (384)
.+.+.|+|+|+|.++...++...+|+|||.||.-.+.|.+++. ...|++++.||+.+.++.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE 95 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc
Confidence 3789999999999999999988899999999999999999964 445999999999999873
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.17 E-value=9.5e-06 Score=82.43 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=53.3
Q ss_pred CCEEEEEcCcchHHHHHHHHcC------CcEEEEeCCHHHHHHHHHHhcC--C-CCeEEEEccccccchhhhhhhHHhhh
Q 016715 142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFAS--I-DQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~------~~V~avE~d~~~~~~a~~~~~~--~-~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
+..|+|||||+|.|....++.+ .+|+|||.++.++..+++++.. . ++|+++++|+.++..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---------- 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---------- 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----------
Confidence 5689999999999998777654 4899999999988887766332 2 5899999999999765
Q ss_pred ccCCCcceEeec
Q 016715 213 KSSSGFAKVVAN 224 (384)
Q Consensus 213 ~~~~~~d~Vv~N 224 (384)
...|+||+-
T Consensus 257 ---ekvDIIVSE 265 (448)
T PF05185_consen 257 ---EKVDIIVSE 265 (448)
T ss_dssp ---S-EEEEEE-
T ss_pred ---CceeEEEEe
Confidence 478999864
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.16 E-value=9.4e-06 Score=76.10 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccc
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~ 198 (384)
..+...+.+...+.....++|||||+++|+.|..++.. +.+|+++|.++...+.|++++... ++|+++.||+.+
T Consensus 63 ~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 63 TSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 34555555554555556679999999999999999875 569999999999999999988643 489999999988
Q ss_pred cchhhhhhhHHhhhccCCCcceEeecc
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
.-... .......+.||.|+.+-
T Consensus 143 ~L~~l-----~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 143 VLDQM-----IEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHHH-----HhccccCCcccEEEecC
Confidence 53221 00000125799999763
No 185
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.16 E-value=1e-05 Score=73.37 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=57.4
Q ss_pred CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
...+||||||.|.....+|.. +..++|||+....+..+..+.. ..+|+.++++|+..+-.. ++ ..+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-----~~----~~~~ 88 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-----LF----PPGS 88 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH-----HS----TTTS
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh-----cc----cCCc
Confidence 348999999999999999987 5689999999999998887765 356999999999884211 11 2367
Q ss_pred cceEeeccC
Q 016715 218 FAKVVANIP 226 (384)
Q Consensus 218 ~d~Vv~NlP 226 (384)
.+.|.-|.|
T Consensus 89 v~~i~i~FP 97 (195)
T PF02390_consen 89 VDRIYINFP 97 (195)
T ss_dssp EEEEEEES-
T ss_pred hheEEEeCC
Confidence 888988876
No 186
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.11 E-value=9.1e-06 Score=74.11 Aligned_cols=98 Identities=17% Similarity=0.331 Sum_probs=63.9
Q ss_pred cCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhc-------C---
Q 016715 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA-------S--- 185 (384)
Q Consensus 118 ~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~-------~--- 185 (384)
.||. +.+.....|++.+++.+++..+|||||.|......+.. ++ +.+|||+.+...+.++.... .
T Consensus 22 ~YGE---i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 22 TYGE---ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CGGG---CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred ceee---cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555 56788889999999999999999999999998777654 65 59999999998877764321 1
Q ss_pred -CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeec-cCc
Q 016715 186 -IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF 227 (384)
Q Consensus 186 -~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy 227 (384)
...+++.+||+.+.++.... + ...|+|+.| .-|
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~---~------s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDI---W------SDADVVFVNNTCF 133 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHH---G------HC-SEEEE--TTT
T ss_pred ccccceeeccCccccHhHhhh---h------cCCCEEEEecccc
Confidence 23788999999887654311 1 246788776 444
No 187
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.10 E-value=9.5e-06 Score=80.65 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~----~v~~~~gD~~ 197 (384)
|..|.+...+.+.... .|++||++.|=||.++..++..|+ +|++||.|...++.|++|++.++ .+.++++|+.
T Consensus 201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 3444444444444332 389999999999999999999998 99999999999999999987543 5889999998
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
++--... ..+..||+||.+||-
T Consensus 279 ~~l~~~~--------~~g~~fDlIilDPPs 300 (393)
T COG1092 279 KWLRKAE--------RRGEKFDLIILDPPS 300 (393)
T ss_pred HHHHHHH--------hcCCcccEEEECCcc
Confidence 8643210 134589999999985
No 188
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.08 E-value=1.2e-05 Score=74.38 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=61.4
Q ss_pred CEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
..+||||||.|.....+|+.. ..++|||+....+..|.+.+... +|+.++++|+.++...- ...+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~---------~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL---------IPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc---------CCCCCe
Confidence 589999999999999999984 48999999999999888877642 49999999998864221 122478
Q ss_pred ceEeeccCc
Q 016715 219 AKVVANIPF 227 (384)
Q Consensus 219 d~Vv~NlPy 227 (384)
|.|+-|.|=
T Consensus 121 ~~I~i~FPD 129 (227)
T COG0220 121 DKIYINFPD 129 (227)
T ss_pred eEEEEECCC
Confidence 999999874
No 189
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.05 E-value=3.1e-06 Score=76.90 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~ 205 (384)
-|..++.++..++..+-+++||+|||||-.+..|..+..+++|||+|.+|++.|.++-- ++ .+.++|+..+...
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~-YD--~L~~Aea~~Fl~~--- 183 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL-YD--TLYVAEAVLFLED--- 183 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc-hH--HHHHHHHHHHhhh---
Confidence 36677888888877767899999999999999999999999999999999999987621 11 2333444332110
Q ss_pred hhHHhhhccCCCcceEeec
Q 016715 206 LSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~N 224 (384)
+....+|+|++.
T Consensus 184 -------~~~er~DLi~Aa 195 (287)
T COG4976 184 -------LTQERFDLIVAA 195 (287)
T ss_pred -------ccCCcccchhhh
Confidence 234678999873
No 190
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.02 E-value=2.9e-05 Score=72.34 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=78.6
Q ss_pred cCCCcccCCHHHHHHHHHHhc-----CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEE
Q 016715 118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (384)
Q Consensus 118 ~~gq~fl~~~~~~~~il~~l~-----~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~ 192 (384)
..|.-|+.+..-..+++..-. .....++||||+|.|..|..++..-.+|++.|.|+.|...++++ +.+++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl 140 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL 140 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence 456778888877788877552 12456899999999999999999888999999999998888875 45555
Q ss_pred EccccccchhhhhhhHHhhhccCCCcceEee-c------cCccccHHHHHHhcccCCCeeE
Q 016715 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVA-N------IPFNISTDVIKQLLPMGDIFSE 246 (384)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~-N------lPy~i~~~il~~L~~~g~~~~~ 246 (384)
..| ++.- ....||+|.+ | -|.....++...|.+.|.++..
T Consensus 141 ~~~--~w~~------------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 141 DID--DWQQ------------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ehh--hhhc------------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 332 2221 1246888864 4 3666667777777776665433
No 191
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.01 E-value=3e-05 Score=74.27 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCC-----CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC----CCeEEEEccc
Q 016715 128 EINDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDF 196 (384)
Q Consensus 128 ~~~~~il~~l~~~~-----~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~ 196 (384)
+++..|.+.+.... .-++||||||.-.+=..|..+ +.+++|.|+|+..++.|++++..+ ++|+++...-
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 34555555554322 348999999987665555443 889999999999999999998765 2688876543
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeeccCccccHHH
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~i 233 (384)
...-+.. +.. ....||..++|+||+-+.+-
T Consensus 164 ~~~i~~~----i~~---~~e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 164 PDNIFDG----IIQ---PNERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp T-SSTTT----STT-----S-EEEEEE-----SS---
T ss_pred ccccchh----hhc---ccceeeEEecCCccccChhh
Confidence 2211111 111 22579999999999887644
No 192
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.8e-05 Score=71.57 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~ 203 (384)
+..|+..+++.+|.+|+|-|+|+|.++.++++.- .+++..|++..-.+.|.+.+... +++.+.+-|+....+..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5678889999999999999999999999999873 49999999999999999888642 49999999998876643
Q ss_pred hhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCC
Q 016715 204 HMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGD 242 (384)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~ 242 (384)
....+|.|+.++|--+ .+.....++..|.
T Consensus 174 ----------ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 174 ----------KSLKADAVFLDLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ----------cccccceEEEcCCChhhhhhhhHHHhhhcCc
Confidence 2357899999987522 2333344555453
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.96 E-value=5.5e-05 Score=73.39 Aligned_cols=83 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
.+|.++|||||++|..|..|+++|.+|+|||..+ |. ..+...++|+.+.+|....... ...+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p~------------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRPP------------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCCC------------CCCCC
Confidence 4789999999999999999999999999999543 32 3334457999999998876432 25789
Q ss_pred eEeecc---CccccHHHHHHhcc
Q 016715 220 KVVANI---PFNISTDVIKQLLP 239 (384)
Q Consensus 220 ~Vv~Nl---Py~i~~~il~~L~~ 239 (384)
.+++++ |..+..-+..|+..
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~ 295 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVN 295 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhc
Confidence 999985 44555444445443
No 194
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.93 E-value=3.3e-05 Score=73.86 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=65.2
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~~v~~~~gD~~ 197 (384)
|+-.......+.+.. .+++||++.|=||.++...+..|+ +|++||.|..+++.+++++..+ .+++++.+|+.
T Consensus 108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 444444444444432 578999999999999999888887 7999999999999999998743 37899999998
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+.--.- .....||+||.+||-
T Consensus 185 ~~l~~~---------~~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 185 KFLKRL---------KKGGRFDLIILDPPS 205 (286)
T ss_dssp HHHHHH---------HHTT-EEEEEE--SS
T ss_pred HHHHHH---------hcCCCCCEEEECCCC
Confidence 743210 123689999999985
No 195
>PLN02823 spermine synthase
Probab=97.91 E-value=4.7e-05 Score=74.60 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=60.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
..++||.||+|.|.+++.+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++-..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---------- 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---------- 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence 4568999999999999998886 34899999999999999998742 36899999999885321
Q ss_pred ccCCCcceEeecc
Q 016715 213 KSSSGFAKVVANI 225 (384)
Q Consensus 213 ~~~~~~d~Vv~Nl 225 (384)
..+.||+|+.++
T Consensus 173 -~~~~yDvIi~D~ 184 (336)
T PLN02823 173 -RDEKFDVIIGDL 184 (336)
T ss_pred -CCCCccEEEecC
Confidence 236799999885
No 196
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.91 E-value=4.4e-05 Score=67.78 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccccchhhhhhhHHhh
Q 016715 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
...+.+|||+|||+|..+..++.. +.+|+..|.++ .++.++.++..+ +++++..-|..+-... +..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~----~~~-- 115 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDS----DLL-- 115 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHH----HHH--
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccc----ccc--
Confidence 346789999999999999999998 66999999999 999999988653 3566666555431111 111
Q ss_pred hccCCCcceEee-ccCc
Q 016715 212 RKSSSGFAKVVA-NIPF 227 (384)
Q Consensus 212 ~~~~~~~d~Vv~-NlPy 227 (384)
....||+|++ +.-|
T Consensus 116 --~~~~~D~IlasDv~Y 130 (173)
T PF10294_consen 116 --EPHSFDVILASDVLY 130 (173)
T ss_dssp --S-SSBSEEEEES--S
T ss_pred --ccccCCEEEEecccc
Confidence 2357898876 4555
No 197
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.88 E-value=8e-05 Score=71.75 Aligned_cols=98 Identities=11% Similarity=0.366 Sum_probs=79.0
Q ss_pred cccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccc
Q 016715 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVK 198 (384)
Q Consensus 122 ~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~ 198 (384)
||..-|-+++.+++.+.+.+++.++|.=+|.|..|..+++. ..+|+|+|.|+.+++.+++++... ++++++++++.+
T Consensus 1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 45567788999999999999999999999999999999986 369999999999999999988654 489999999988
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccC
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
+... ... .....+|.|+.|+-
T Consensus 81 l~~~------l~~-~~~~~vDgIl~DLG 101 (305)
T TIGR00006 81 FFEH------LDE-LLVTKIDGILVDLG 101 (305)
T ss_pred HHHH------HHh-cCCCcccEEEEecc
Confidence 6521 110 11245888888763
No 198
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.87 E-value=7.1e-05 Score=74.40 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=65.2
Q ss_pred CEEEEEcCcchHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~-~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
-+|||..||+|..+..++.. | .+|+++|+++..++.++++++.++ +++++++|+..+... ....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-----------~~~~ 114 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-----------RNRK 114 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-----------hCCC
Confidence 48999999999999999987 4 489999999999999999987543 689999998876321 1246
Q ss_pred cceEeeccCccccHHHHH
Q 016715 218 FAKVVANIPFNISTDVIK 235 (384)
Q Consensus 218 ~d~Vv~NlPy~i~~~il~ 235 (384)
||+|+.++ |....+++.
T Consensus 115 fDvIdlDP-fGs~~~fld 131 (374)
T TIGR00308 115 FHVIDIDP-FGTPAPFVD 131 (374)
T ss_pred CCEEEeCC-CCCcHHHHH
Confidence 99999987 665555554
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.86 E-value=3e-05 Score=80.27 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=59.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.+..+||||||.|.++..+|.. ...++|||+....+..+...... ..|+.++.+|+..+.. .+ ..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~~----~~~ 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------DL----PNN 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------hc----Ccc
Confidence 4679999999999999999998 45899999999988887776543 3589999888654321 11 125
Q ss_pred CcceEeeccCc
Q 016715 217 GFAKVVANIPF 227 (384)
Q Consensus 217 ~~d~Vv~NlPy 227 (384)
..|.|+.|+|=
T Consensus 417 sv~~i~i~FPD 427 (506)
T PRK01544 417 SLDGIYILFPD 427 (506)
T ss_pred cccEEEEECCC
Confidence 68999999874
No 200
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.80 E-value=3.7e-05 Score=69.60 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCcccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcc
Q 016715 120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQED 195 (384)
Q Consensus 120 gq~fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD 195 (384)
||-..+.+.+...|+...... ....|+|..||.|.-|...+.++..|++||+|+--++-|+.+++-. ++|.+++||
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 343446677777776655322 5578999999999999999999999999999999999999998743 389999999
Q ss_pred ccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHH
Q 016715 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il 234 (384)
++++--...+ .....|.|+..+|+.-++-..
T Consensus 152 ~ld~~~~lq~--------~K~~~~~vf~sppwggp~y~~ 182 (263)
T KOG2730|consen 152 FLDLASKLKA--------DKIKYDCVFLSPPWGGPSYLR 182 (263)
T ss_pred HHHHHHHHhh--------hhheeeeeecCCCCCCcchhh
Confidence 9886322110 123467788888876655443
No 201
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.75 E-value=0.00011 Score=62.90 Aligned_cols=59 Identities=24% Similarity=0.445 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCcchHHHHHHHH-----c-CCcEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEccccc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVK 198 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~-----~-~~~V~avE~d~~~~~~a~~~~~~~-----~~v~~~~gD~~~ 198 (384)
.+...|+|+|||.|+++..|+. . +.+|++||.++..++.+..+.... .++++..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 4678999999999999999999 4 679999999999998888775421 245555555443
No 202
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.72 E-value=0.00011 Score=75.00 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHh--cCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715 126 NSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (384)
Q Consensus 126 ~~~~~~~il~~l--~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~ 198 (384)
++......+..+ ++.++++|||++||+|.=|..++.. ...|+|+|+++.-+..+++++... .|+.+.+.|+..
T Consensus 96 Qd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~ 175 (470)
T PRK11933 96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRV 175 (470)
T ss_pred ECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhh
Confidence 333344444555 6789999999999999999999986 248999999999999999998754 488999999876
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccC
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
+... ....||.|+.+.|
T Consensus 176 ~~~~-----------~~~~fD~ILvDaP 192 (470)
T PRK11933 176 FGAA-----------LPETFDAILLDAP 192 (470)
T ss_pred hhhh-----------chhhcCeEEEcCC
Confidence 5321 1246899998877
No 203
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.71 E-value=3.9e-05 Score=73.60 Aligned_cols=115 Identities=27% Similarity=0.371 Sum_probs=87.8
Q ss_pred HHhCCCCCcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHH-------HH
Q 016715 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL-------VR 180 (384)
Q Consensus 108 l~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~-------a~ 180 (384)
+.+..++.+...|- .-.|+++---+++.+...+|+.|+|-..|||.+....+..|+.|+|.|||-.++.. .+
T Consensus 176 i~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~ 254 (421)
T KOG2671|consen 176 IEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIK 254 (421)
T ss_pred hhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchh
Confidence 44445555555554 56678877778888889999999999999999999999999999999999998873 23
Q ss_pred HHhcCCC----CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHH
Q 016715 181 ERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (384)
Q Consensus 181 ~~~~~~~----~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il 234 (384)
.+++.++ -+.++.+|+.+-++.. .-.||.||+++||.+-...-
T Consensus 255 aNFkQYg~~~~fldvl~~D~sn~~~rs-----------n~~fDaIvcDPPYGVRe~~r 301 (421)
T KOG2671|consen 255 ANFKQYGSSSQFLDVLTADFSNPPLRS-----------NLKFDAIVCDPPYGVREGAR 301 (421)
T ss_pred HhHHHhCCcchhhheeeecccCcchhh-----------cceeeEEEeCCCcchhhhhh
Confidence 4444332 3567778887766542 35799999999998876554
No 204
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.71 E-value=6.2e-05 Score=69.17 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=51.2
Q ss_pred EEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (384)
.++|+|||+|..++.++..-.+|+|+|+++.|+..|++..... -...+...+..++ .. ..++.|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~g----------~e~SVDl 103 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--LG----------GEESVDL 103 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--cC----------CCcceee
Confidence 8999999999888888888789999999999999988764211 1222322232222 11 1367899
Q ss_pred EeeccCcccc
Q 016715 221 VVANIPFNIS 230 (384)
Q Consensus 221 Vv~NlPy~i~ 230 (384)
|++.-.+|+.
T Consensus 104 I~~Aqa~HWF 113 (261)
T KOG3010|consen 104 ITAAQAVHWF 113 (261)
T ss_pred ehhhhhHHhh
Confidence 8876555443
No 205
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=0.00011 Score=62.42 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=46.1
Q ss_pred EEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccc
Q 016715 144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~ 198 (384)
.+||||||.|..+..++..+. +|+++|.++.+++.+++++..+ +++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998854 6999999999999999987643 467877766554
No 206
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.59 E-value=0.00034 Score=72.11 Aligned_cols=106 Identities=13% Similarity=0.199 Sum_probs=81.7
Q ss_pred CcccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhcCC--
Q 016715 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASI-- 186 (384)
Q Consensus 115 ~~~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~~~~-- 186 (384)
..+..|| |.++..+.+-|++.+.+.+..+|+|.-||+|.+-....+. . ...+|.|+++.....++.++.-.
T Consensus 161 ~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi 239 (489)
T COG0286 161 EGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI 239 (489)
T ss_pred cCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence 3455688 8999999999999999888889999999999887666553 1 46899999999999999887532
Q ss_pred C-CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcc
Q 016715 187 D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 187 ~-~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
+ ++.+.++|.+.-+....- .....||.|++|+||+
T Consensus 240 ~~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~ 275 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFS 275 (489)
T ss_pred CccccccccccccCCccccc-------CCccceeEEEeCCCCC
Confidence 2 467778887776543200 0235699999999997
No 207
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00041 Score=63.86 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=61.5
Q ss_pred HHHHHHHhcCC-CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEE-ccccccchhhhhh
Q 016715 130 NDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ-EDFVKCHIRSHML 206 (384)
Q Consensus 130 ~~~il~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~-gD~~~~~~~~~~~ 206 (384)
+..+++...+. ++..+||||+-||.+|..++++|+ +|+|||.....+.. .+...+++.++. .|+..+...+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~--- 140 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPED--- 140 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHH---
Confidence 44556666654 688999999999999999999976 89999987654432 333446665554 3555554433
Q ss_pred hHHhhhccCCCcceEeeccCccccH
Q 016715 207 SLFERRKSSSGFAKVVANIPFNIST 231 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~~ 231 (384)
-.+.+|.++++..|--..
T Consensus 141 -------~~~~~d~~v~DvSFISL~ 158 (245)
T COG1189 141 -------FTEKPDLIVIDVSFISLK 158 (245)
T ss_pred -------cccCCCeEEEEeehhhHH
Confidence 124678999998874333
No 208
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00015 Score=66.13 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
....++|||||-|++...|...+. +++-+|.+-.|++.++..-...-.+....+|-+.+++.+ +.+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~e------------ns~D 139 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKE------------NSVD 139 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccc------------cchh
Confidence 345799999999999999998865 899999999999998865321114556678888888754 7899
Q ss_pred eEeeccCccccHHH-------HHHhcccCCCee
Q 016715 220 KVVANIPFNISTDV-------IKQLLPMGDIFS 245 (384)
Q Consensus 220 ~Vv~NlPy~i~~~i-------l~~L~~~g~~~~ 245 (384)
+|++.+..+|..++ -..|++.|.++.
T Consensus 140 LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 99998888776543 234555555443
No 209
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.0006 Score=65.17 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=66.2
Q ss_pred HHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccc
Q 016715 129 INDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDF 196 (384)
Q Consensus 129 ~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~ 196 (384)
....++.+.. .++ ++||-||-|.|..++++++.. .+++.||+|+..++.+++.+.. .++++++.+|+
T Consensus 61 ~yhEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 61 IYHEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 4444554443 233 599999999999999999985 5899999999999999998752 36899999999
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeecc
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
.++--. ....||+||.+.
T Consensus 140 ~~~v~~-----------~~~~fDvIi~D~ 157 (282)
T COG0421 140 VEFLRD-----------CEEKFDVIIVDS 157 (282)
T ss_pred HHHHHh-----------CCCcCCEEEEcC
Confidence 886432 224799999874
No 210
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00023 Score=65.50 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=40.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS 185 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~ 185 (384)
.+..+|||||-+|.+|..+++. ++ .|+|+|||+.+++.|++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 5678999999999999999997 55 799999999999999998764
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.39 E-value=0.00076 Score=63.38 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEccccccchhhhhhhHHhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
..++||-||-|.|..+..+++.. .+|++||+|+.+++.+++.+. ..++++++.+|+..+--.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~---------- 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE---------- 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----------
Confidence 56899999999999999999874 589999999999999998654 236999999999886432
Q ss_pred ccCC-CcceEeeccCc
Q 016715 213 KSSS-GFAKVVANIPF 227 (384)
Q Consensus 213 ~~~~-~~d~Vv~NlPy 227 (384)
... .+|+|+.+++-
T Consensus 146 -~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 146 -TQEEKYDVIIVDLTD 160 (246)
T ss_dssp -SSST-EEEEEEESSS
T ss_pred -ccCCcccEEEEeCCC
Confidence 224 79999987643
No 212
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00063 Score=60.76 Aligned_cols=88 Identities=19% Similarity=0.333 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC-CeEEEEccccccchhhhh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~ 205 (384)
.+.+.+.++-+.-.|++|||.|+|+|-.+...+..|+ .|++.|+++.....++-|.+.++ ++.+.+.|..- +
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----- 139 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----- 139 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----
Confidence 3445555555555789999999999999999999977 89999999999888888877665 77888888766 2
Q ss_pred hhHHhhhccCCCcceEe-eccCcccc
Q 016715 206 LSLFERRKSSSGFAKVV-ANIPFNIS 230 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv-~NlPy~i~ 230 (384)
.+.+|+++ +++-|+.+
T Consensus 140 ---------~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 140 ---------PPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ---------CcceeEEEeeceecCch
Confidence 14677775 56766554
No 213
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.34 E-value=0.00029 Score=62.72 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=50.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.+.+|||+||++|..+..+++++ .+|+|+|+.+. ...+++..+++|+.+....+.+...+. .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence 34899999999999999999997 69999998866 222478888899876543322222221 01257
Q ss_pred cceEeeccC
Q 016715 218 FAKVVANIP 226 (384)
Q Consensus 218 ~d~Vv~NlP 226 (384)
+|+|+++..
T Consensus 92 ~dlv~~D~~ 100 (181)
T PF01728_consen 92 FDLVLSDMA 100 (181)
T ss_dssp ESEEEE---
T ss_pred cceeccccc
Confidence 999999873
No 214
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.31 E-value=0.0015 Score=60.89 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhH
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~ 208 (384)
..+++.....+..+|+|||+|.|.++..+++. +.+++.+|. |..++.+++ .++++++.||+. -++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f-~~~------- 156 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF-DPL------- 156 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT-TCC-------
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH-hhh-------
Confidence 34555566667789999999999999999987 568999998 888888887 469999999998 332
Q ss_pred HhhhccCCCcceEe-eccCccccHHHHHHhc
Q 016715 209 FERRKSSSGFAKVV-ANIPFNISTDVIKQLL 238 (384)
Q Consensus 209 ~~~~~~~~~~d~Vv-~NlPy~i~~~il~~L~ 238 (384)
+.+|+++ .++-.+++.+-...++
T Consensus 157 -------P~~D~~~l~~vLh~~~d~~~~~iL 180 (241)
T PF00891_consen 157 -------PVADVYLLRHVLHDWSDEDCVKIL 180 (241)
T ss_dssp -------SSESEEEEESSGGGS-HHHHHHHH
T ss_pred -------ccccceeeehhhhhcchHHHHHHH
Confidence 2267765 5555566665555544
No 215
>PRK00536 speE spermidine synthase; Provisional
Probab=97.31 E-value=0.0022 Score=60.67 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcC---CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc------CCCCeEEEEcccc
Q 016715 127 SEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA------SIDQLKVLQEDFV 197 (384)
Q Consensus 127 ~~~~~~il~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~------~~~~v~~~~gD~~ 197 (384)
+.+...++.+... ...++||=||.|.|...+++++...+|+.||+|+.+++.+++.+. .+++++++.. +.
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~ 133 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL 133 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence 4455566655432 345799999999999999999986699999999999999998543 2468888751 11
Q ss_pred ccchhhhhhhHHhhhccCCCcceEeeccCccc--cHHHHHHhcccCCCe
Q 016715 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIF 244 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~~~il~~L~~~g~~~ 244 (384)
+ ...+.||+||.+..|.. -..+.+.|.++|-++
T Consensus 134 -----~---------~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v 168 (262)
T PRK00536 134 -----D---------LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFI 168 (262)
T ss_pred -----h---------ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEE
Confidence 1 11257999999854422 234455666655443
No 216
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00053 Score=63.13 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=53.9
Q ss_pred CcccCCHHHHHHHHHHhcCC-CC--CEEEEEcCcchHHHHHHHHcC----CcEEEEeCCHHHHHHHHHHhcCCC-CeEEE
Q 016715 121 QHYMLNSEINDQLAAAAAVQ-EG--DIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID-QLKVL 192 (384)
Q Consensus 121 q~fl~~~~~~~~il~~l~~~-~~--~~VLEIG~G~G~lt~~La~~~----~~V~avE~d~~~~~~a~~~~~~~~-~v~~~ 192 (384)
.+|..+.+.+.+=...+... .. .+|||||||.|.....+++.. .+|+++|.++++++..+++..-.+ ++...
T Consensus 48 ~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 48 NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF 127 (264)
T ss_pred ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence 34666766665555444332 22 279999999999999999862 479999999999999998765322 44444
Q ss_pred Eccccc
Q 016715 193 QEDFVK 198 (384)
Q Consensus 193 ~gD~~~ 198 (384)
..|+..
T Consensus 128 v~Dlt~ 133 (264)
T KOG2361|consen 128 VWDLTS 133 (264)
T ss_pred ceeccc
Confidence 444433
No 217
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.08 E-value=0.0053 Score=56.89 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=59.8
Q ss_pred CCcccCCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC-Ce
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASID-QL 189 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt-~~La~~~~~V~avE~d~~~~~~a~~~~~~~~-~v 189 (384)
.|...+.|-|.+.+..+.+.+=.+.- -.|++||=+|=+--..- ..+.....+|+.+|+|+++++..++..+..+ ++
T Consensus 15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i 94 (243)
T PF01861_consen 15 EPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI 94 (243)
T ss_dssp ---GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E
T ss_pred CCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce
Confidence 67788999888888887776655543 36889999986643332 2333346799999999999999998776433 69
Q ss_pred EEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 190 ~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
+.++.|+.+--.++ ..+.||+++.++||.+.
T Consensus 95 ~~~~~DlR~~LP~~----------~~~~fD~f~TDPPyT~~ 125 (243)
T PF01861_consen 95 EAVHYDLRDPLPEE----------LRGKFDVFFTDPPYTPE 125 (243)
T ss_dssp EEE---TTS---TT----------TSS-BSEEEE---SSHH
T ss_pred EEEEecccccCCHH----------HhcCCCEEEeCCCCCHH
Confidence 99999987743332 23789999999999764
No 218
>PRK11524 putative methyltransferase; Provisional
Probab=97.07 E-value=0.0019 Score=61.90 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~ 184 (384)
.+..++++++.... .+|+.|||..||+|+.+.+..+.|.+.+|+|++++.++.+++++.
T Consensus 193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 45778888888776 578999999999999999999999999999999999999999975
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.06 E-value=0.0038 Score=56.99 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=47.7
Q ss_pred EEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715 145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (384)
Q Consensus 145 VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~ 199 (384)
|.||||--|++...|.+.|. +++++|+++.-++.|++++... +++++..||.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 68999999999999999976 8999999999999999998753 4799999998874
No 220
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.99 E-value=0.0022 Score=58.43 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=47.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHH
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~ 181 (384)
...+..++++++.... .+|+.|||..||+|+.+.+..+.|.+.+|+|+++..++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4467889999998775 568999999999999999999999999999999999998874
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0046 Score=61.26 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=72.4
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC----CcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~----~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~ 196 (384)
|..+..........+++.+|++|||..++.|.=|..+++.. ..|+|+|+|+.=+..+++++...+ |+.+++.|+
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 33444444455567789999999999999999999999873 357999999999999999987543 788999988
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
...+-.. .....||.|+.+.|=
T Consensus 218 ~~~~~~~---------~~~~~fD~iLlDaPC 239 (355)
T COG0144 218 RRLAELL---------PGGEKFDRILLDAPC 239 (355)
T ss_pred ccccccc---------cccCcCcEEEECCCC
Confidence 7654221 011359999988774
No 222
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.84 E-value=0.0033 Score=60.00 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred EEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715 144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv 222 (384)
+|+|+.||.|.++..+.+.|.+ |.++|+|+.+++..+.+... . ++++|+.++...+. .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~----------~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDF----------IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhc----------CCCCCEEE
Confidence 5899999999999999988875 67999999999999888642 2 67888888764321 25689999
Q ss_pred eccCccccH
Q 016715 223 ANIPFNIST 231 (384)
Q Consensus 223 ~NlPy~i~~ 231 (384)
+.+|-+-.+
T Consensus 68 ~gpPCq~fS 76 (275)
T cd00315 68 GGFPCQPFS 76 (275)
T ss_pred eCCCChhhh
Confidence 999874433
No 223
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.82 E-value=0.0038 Score=57.87 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=54.2
Q ss_pred HHHHHhcCCCC--CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc---C--C------CCeEEEEccccc
Q 016715 132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---S--I------DQLKVLQEDFVK 198 (384)
Q Consensus 132 ~il~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~---~--~------~~v~~~~gD~~~ 198 (384)
.|++..+++++ .+|||.=+|.|.-+..++..|++|+++|.++-+...++.-+. . . .+++++++|..+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 46666666665 499999999999999999899999999999988777664322 1 1 279999999988
Q ss_pred cchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+-.. ....+|+|..++-|
T Consensus 144 ~L~~-----------~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLRQ-----------PDNSFDVVYFDPMF 161 (234)
T ss_dssp HCCC-----------HSS--SEEEE--S-
T ss_pred HHhh-----------cCCCCCEEEECCCC
Confidence 6431 13689999998766
No 224
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.79 E-value=0.0052 Score=58.95 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccch
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (384)
..-....+..+.+.+++.|||..+|.|.=|..+++. ...|+|.|+++.-+..++.++... .++.+...|+.....
T Consensus 71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH
T ss_pred ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc
Confidence 333344455678889999999999999999999987 248999999999999999887654 488888888887642
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCc
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
.. ....||.|+.+.|=
T Consensus 151 ~~----------~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 151 KK----------PESKFDRVLVDAPC 166 (283)
T ss_dssp HH----------HTTTEEEEEEECSC
T ss_pred cc----------cccccchhhcCCCc
Confidence 21 12359999988875
No 225
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.77 E-value=0.0031 Score=60.89 Aligned_cols=94 Identities=13% Similarity=0.256 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccch
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI 201 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~ 201 (384)
.-|-+++.+++.+.+.++...+|.=-|.|..|..+++. +.+|+|+|.|+.+++.+++++... +++.++++++.++..
T Consensus 4 H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 4 HIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp ---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred eecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence 34567888999999999999999999999999999986 579999999999999999988754 589999999988753
Q ss_pred hhhhhhHHhhhc-cCCCcceEeecc
Q 016715 202 RSHMLSLFERRK-SSSGFAKVVANI 225 (384)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~d~Vv~Nl 225 (384)
.. .. + ....+|.|+.++
T Consensus 84 ~l------~~-~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 YL------KE-LNGINKVDGILFDL 101 (310)
T ss_dssp HH------HH-TTTTS-EEEEEEE-
T ss_pred HH------HH-ccCCCccCEEEEcc
Confidence 21 11 1 235678887765
No 226
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.77 E-value=0.0035 Score=61.38 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC--------CC----CeEEEEccccccchhhhhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~--------~~----~v~~~~gD~~~~~~~~~~~~ 207 (384)
++.+|||+|||-|.-..--... -..++|+|++...++.|++++.. .. ...++.+|.....+.+.+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999977655444444 56899999999999999999821 11 45678888876544332110
Q ss_pred HHhhhccCCCcceEeeccC
Q 016715 208 LFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlP 226 (384)
....||+|-+-+.
T Consensus 142 ------~~~~FDvVScQFa 154 (331)
T PF03291_consen 142 ------RSRKFDVVSCQFA 154 (331)
T ss_dssp ------TTS-EEEEEEES-
T ss_pred ------cCCCcceeehHHH
Confidence 1247888866543
No 227
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.012 Score=56.19 Aligned_cols=79 Identities=13% Similarity=0.307 Sum_probs=68.7
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVK 198 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~ 198 (384)
+..-+-+++.+++.+.+.++...+|.--|.|..+.++++.. .+++|+|.|+.+++.|++++... +++.++++++.+
T Consensus 5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred CCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 34456788999999999999999999999999999999873 57999999999999999998764 599999999887
Q ss_pred cch
Q 016715 199 CHI 201 (384)
Q Consensus 199 ~~~ 201 (384)
+..
T Consensus 85 l~~ 87 (314)
T COG0275 85 LAE 87 (314)
T ss_pred HHH
Confidence 653
No 228
>PRK13699 putative methylase; Provisional
Probab=96.69 E-value=0.0065 Score=56.38 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~ 184 (384)
..+..+.+.++.... .+|+.|||..||+|+...+..+.|.+.+|+|+++...+.+.+++.
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 356788888887665 478999999999999999999999999999999999999998875
No 229
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.60 E-value=0.003 Score=55.22 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=38.9
Q ss_pred EEEeCCHHHHHHHHHHhcC-----CCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 167 LAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 167 ~avE~d~~~~~~a~~~~~~-----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+|+|++++|++.|+++... ..+++++++|+.++++.+ +.||.|+++.-.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~------------~~fD~v~~~~~l 54 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD------------CEFDAVTMGYGL 54 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC------------CCeeEEEecchh
Confidence 4899999999999876531 237999999999998754 679999887544
No 230
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.59 E-value=0.012 Score=53.98 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=69.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF 196 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~ 196 (384)
....+.....+...+....++++||||.=||+.+...|.. +.+|+++|+|+...+...+..+.. ..|.+++|++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 4555666655555556666789999998888888877765 679999999999999987765432 3899999999
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeec
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
.+.-... ... ...+.||.+|-+
T Consensus 135 ~esLd~l-----~~~-~~~~tfDfaFvD 156 (237)
T KOG1663|consen 135 LESLDEL-----LAD-GESGTFDFAFVD 156 (237)
T ss_pred hhhHHHH-----Hhc-CCCCceeEEEEc
Confidence 8753221 111 134679998865
No 231
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.58 E-value=0.013 Score=52.55 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=51.3
Q ss_pred EEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhc--CCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~--~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
+++|||+|.|.=+..|+=. ..+++.+|....=+..++.... ..+|++++++++++.. ....||
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-------------~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE-------------YRESFD 117 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-------------TTT-EE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-------------cCCCcc
Confidence 8999999999988888765 5589999999987777766544 2358999999999821 236789
Q ss_pred eEeec
Q 016715 220 KVVAN 224 (384)
Q Consensus 220 ~Vv~N 224 (384)
.|++=
T Consensus 118 ~v~aR 122 (184)
T PF02527_consen 118 VVTAR 122 (184)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99863
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.53 E-value=0.013 Score=57.17 Aligned_cols=67 Identities=16% Similarity=0.332 Sum_probs=51.7
Q ss_pred HHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhc--CCCCeEE--EEcccccc
Q 016715 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC 199 (384)
Q Consensus 131 ~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a~~~~~--~~~~v~~--~~gD~~~~ 199 (384)
..|++.+. ++..++|+|||+|.=|..|++. ....++||+|..+++.+..++. ..+.+++ ++||+.+.
T Consensus 68 ~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 5668999999999999887763 2469999999999999999887 3466666 88888664
No 233
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.50 E-value=0.0018 Score=58.38 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=58.9
Q ss_pred HhCCCCCcccCCCcccCCHHHHHHHHHHhcCC---CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Q 016715 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 109 ~~~~~~~~~~~gq~fl~~~~~~~~il~~l~~~---~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~ 182 (384)
.+..+..--.+|.-|+-+++--++++..-++. ...++||+|+|.|..|..++..--+|+|.|.+..|...++..
T Consensus 77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 33344444567888988888888887765433 346999999999999999998877899999999999998865
No 234
>PHA01634 hypothetical protein
Probab=96.42 E-value=0.0063 Score=50.69 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS 185 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~ 185 (384)
.+++|+|||++.|..+...+.+|+ +|+++|.++.+.+..+++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 578999999999999999999987 799999999999999987753
No 235
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.012 Score=53.96 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=61.7
Q ss_pred CCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
+++++|||+|.|.=+..|+-. ..+|+.+|....=+..++..... .+|++++++.++++... ..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-------------~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-------------KK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-------------cc
Confidence 589999999999988887732 55799999988777666665443 35899999999997532 23
Q ss_pred -cceEeec--cCccccHHHHHHhcccC
Q 016715 218 -FAKVVAN--IPFNISTDVIKQLLPMG 241 (384)
Q Consensus 218 -~d~Vv~N--lPy~i~~~il~~L~~~g 241 (384)
+|+|.+- -+.+...++...|+..+
T Consensus 135 ~~D~vtsRAva~L~~l~e~~~pllk~~ 161 (215)
T COG0357 135 QYDVVTSRAVASLNVLLELCLPLLKVG 161 (215)
T ss_pred cCcEEEeehccchHHHHHHHHHhcccC
Confidence 8888763 23344445555555543
No 236
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.37 E-value=0.011 Score=53.61 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=48.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC--CCCe-EEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQL-KVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~--~~~v-~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+.+|||||||||..+.+++.. ...-.--|.++......+..... .+|+ .-+.-|+.+-+++-.. ......
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~----~~~~~~ 100 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL----PAPLSP 100 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc----ccccCC
Confidence 3446999999999999999987 34666889998887666655432 2333 2233455544322100 000012
Q ss_pred CCcceEeec
Q 016715 216 SGFAKVVAN 224 (384)
Q Consensus 216 ~~~d~Vv~N 224 (384)
..+|.|++.
T Consensus 101 ~~~D~i~~~ 109 (204)
T PF06080_consen 101 ESFDAIFCI 109 (204)
T ss_pred CCcceeeeh
Confidence 478988863
No 237
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.28 E-value=0.018 Score=54.93 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI 186 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~ 186 (384)
...+|||+|||+|+.+-++.+. -.+++++|.++.|++.++..+...
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4569999999999887766654 348999999999999988876543
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.016 Score=52.60 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA-GA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~~--~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++..|+|+|+-+|..+..++++ +. .|+|||+.|- ...++|.++++|+.+-+..+.+...+ ...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~l----~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEAL----GGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHHc----CCC
Confidence 47899999999999999999988 33 4999999753 23357999999999876544332222 123
Q ss_pred CcceEeeccCcc
Q 016715 217 GFAKVVANIPFN 228 (384)
Q Consensus 217 ~~d~Vv~NlPy~ 228 (384)
..|+|++++.-+
T Consensus 111 ~~DvV~sD~ap~ 122 (205)
T COG0293 111 PVDVVLSDMAPN 122 (205)
T ss_pred CcceEEecCCCC
Confidence 469999886543
No 239
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.14 E-value=0.014 Score=56.00 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCC----C----CeEEEEccccccchhhhhhhHHh
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLFE 210 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~----~----~v~~~~gD~~~~~~~~~~~~~~~ 210 (384)
++++.++|+|||-|.-...--+.|. +++|+||.+-.++.|+.++..- . .+.++.||-....+.+.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e---- 191 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE---- 191 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc----
Confidence 4678899999999887766666655 8999999999999999987531 1 4788999987765544321
Q ss_pred hhccCCCcceEeeccC--ccccH---------HHHHHhcccCCCe
Q 016715 211 RRKSSSGFAKVVANIP--FNIST---------DVIKQLLPMGDIF 244 (384)
Q Consensus 211 ~~~~~~~~d~Vv~NlP--y~i~~---------~il~~L~~~g~~~ 244 (384)
...+.||+|-+-+. |...+ .+...|.++|.++
T Consensus 192 --~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 192 --FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred --CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 01234888866544 33332 2344666666443
No 240
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.09 E-value=0.018 Score=52.83 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcC------CCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcc
Q 016715 128 EINDQLAAAAAV------QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQED 195 (384)
Q Consensus 128 ~~~~~il~~l~~------~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~----~v~~~~gD 195 (384)
.++..+.+.+.. .++-++||||.|.-.+--.+-.+ |.+.+|-|+|+..++.|+..+..++ .+++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 455566665532 24458999999866554444433 7899999999999999999887654 34544332
Q ss_pred ccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHHH
Q 016715 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~ 235 (384)
=.+--+.+ +. ...+.||...+|+||+-+.+-..
T Consensus 139 ~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 139 DSDAIFNG----II---GKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred Cccccccc----cc---cccceeeeEecCCCcchhHHHHH
Confidence 11111111 11 11367999999999988865544
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.04 E-value=0.021 Score=55.72 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHh--c-------CCCCeEEEEccccccchhhhhhhH
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~--~-------~~~~v~~~~gD~~~~~~~~~~~~~ 208 (384)
+...+||-+|-|.|-..+.+.+.. .+++-||.||+|++.++.+. . .+++++++..|+.++--.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~------ 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT------ 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh------
Confidence 345799999999999999999983 48999999999999998432 1 135899999998875432
Q ss_pred HhhhccCCCcceEeeccCc
Q 016715 209 FERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy 227 (384)
..+.||.||-++|-
T Consensus 362 -----a~~~fD~vIVDl~D 375 (508)
T COG4262 362 -----AADMFDVVIVDLPD 375 (508)
T ss_pred -----hcccccEEEEeCCC
Confidence 23589999988764
No 242
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.04 E-value=0.019 Score=55.46 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=54.1
Q ss_pred EEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEe
Q 016715 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv 222 (384)
+++|+.||.|.++..+.+.|. -|.++|+|+.+++..+.++. .+..+|+.+++..+. . +..|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l---------~-~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDL---------P-KDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHH---------H-HT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccc---------c-ccceEEE
Confidence 689999999999999999987 57799999999999998873 889999999876531 1 1589999
Q ss_pred eccC
Q 016715 223 ANIP 226 (384)
Q Consensus 223 ~NlP 226 (384)
+.+|
T Consensus 67 ggpP 70 (335)
T PF00145_consen 67 GGPP 70 (335)
T ss_dssp EE--
T ss_pred eccC
Confidence 9876
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.03 E-value=0.038 Score=50.71 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=61.6
Q ss_pred HHHHHHHHH---hcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715 128 EINDQLAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (384)
Q Consensus 128 ~~~~~il~~---l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~ 201 (384)
.+.+.|+.- +.+.+|.+||-+|+.+|+.-..++.- ...|+|||.+++..+.+-...+.-+|+--+.+|+.....
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEK 136 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGG
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHH
Confidence 444555443 34678999999999999999999986 348999999998777666555444799999999986432
Q ss_pred hhhhhhHHhhhccCCCcceEeeccCc
Q 016715 202 RSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
-. +..+..|+|+++.+-
T Consensus 137 Y~---------~lv~~VDvI~~DVaQ 153 (229)
T PF01269_consen 137 YR---------MLVEMVDVIFQDVAQ 153 (229)
T ss_dssp GT---------TTS--EEEEEEE-SS
T ss_pred hh---------cccccccEEEecCCC
Confidence 21 123578999998764
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.92 E-value=0.19 Score=47.98 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=48.0
Q ss_pred CEEEEEcCcchHHHHHHHH-c---CCcEEEEeCCHHHHHHHHHHhcC----CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 143 DIVLEIGPGTGSLTNVLLN-A---GATVLAIEKDQHMVGLVRERFAS----IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~-~---~~~V~avE~d~~~~~~a~~~~~~----~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.+|+=||||.=-+|..+.. . +..|+++|+|+..++.+++.... ..+++++.+|+.+...+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl----------- 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL----------- 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-----------
Confidence 4999999998777765554 3 45799999999999999887652 248999999998765321
Q ss_pred CCCcceEe-eccCc---cccHHHHHHhc
Q 016715 215 SSGFAKVV-ANIPF---NISTDVIKQLL 238 (384)
Q Consensus 215 ~~~~d~Vv-~NlPy---~i~~~il~~L~ 238 (384)
..+|+|+ +.+.- .--.+++.++.
T Consensus 191 -~~~DvV~lAalVg~~~e~K~~Il~~l~ 217 (276)
T PF03059_consen 191 -KEYDVVFLAALVGMDAEPKEEILEHLA 217 (276)
T ss_dssp ----SEEEE-TT-S----SHHHHHHHHH
T ss_pred -ccCCEEEEhhhcccccchHHHHHHHHH
Confidence 4678775 44433 12234555553
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.88 E-value=0.022 Score=52.07 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=47.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC-CCC-eEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS-IDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~-~~~-v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
...++||+|||.|..|..++.. ..+|-.||..+.+++.|++.+.. .++ .++.+....++.+. ...
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~------------~~~ 122 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE------------EGK 122 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC------------CCc
Confidence 3469999999999999877544 56899999999999999988764 223 45666666555432 257
Q ss_pred cceEeec
Q 016715 218 FAKVVAN 224 (384)
Q Consensus 218 ~d~Vv~N 224 (384)
+|+|...
T Consensus 123 YDlIW~Q 129 (218)
T PF05891_consen 123 YDLIWIQ 129 (218)
T ss_dssp EEEEEEE
T ss_pred EeEEEeh
Confidence 8998764
No 246
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.84 E-value=0.014 Score=58.13 Aligned_cols=51 Identities=37% Similarity=0.537 Sum_probs=43.5
Q ss_pred EEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEc
Q 016715 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQE 194 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~g 194 (384)
.|||||+|||-++...+..|+ .|+|+|.-..|...|++....++ ++.++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 699999999999998888876 79999999999999998876543 6777654
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.75 E-value=0.049 Score=44.43 Aligned_cols=53 Identities=32% Similarity=0.506 Sum_probs=39.0
Q ss_pred EEEEcCcchHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhcCCCC--eEEEEccccc
Q 016715 145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK 198 (384)
Q Consensus 145 VLEIG~G~G~lt~~La~~~---~~V~avE~d~~~~~~a~~~~~~~~~--v~~~~gD~~~ 198 (384)
++|+|||+|..+ .+.... ..++++|.++.++..++........ +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 444442 4799999999999986555422111 6788888776
No 248
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.69 E-value=0.019 Score=55.90 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=53.8
Q ss_pred EEEEcCcchHHHHHHHHcCCcE-EEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEee
Q 016715 145 VLEIGPGTGSLTNVLLNAGATV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (384)
Q Consensus 145 VLEIG~G~G~lt~~La~~~~~V-~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (384)
|+|+.||.|.++.-+.+.|.++ .++|+|+.+++..+.++. + .++++|+.++...+ .+..|++++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~-----------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSD-----------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhh-----------CCCcCEEEe
Confidence 6899999999999999888875 589999999999888863 3 56678988876533 145788888
Q ss_pred ccC
Q 016715 224 NIP 226 (384)
Q Consensus 224 NlP 226 (384)
.+|
T Consensus 66 g~P 68 (315)
T TIGR00675 66 GFP 68 (315)
T ss_pred cCC
Confidence 876
No 249
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.60 E-value=0.056 Score=51.89 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=41.5
Q ss_pred ccCCHHHHHHHHHHhcCC-CCCEEEEEcCcchHHH----HHHHHc------CCcEEEEeCCHHHHHHHHHH
Q 016715 123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLT----NVLLNA------GATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~lt----~~La~~------~~~V~avE~d~~~~~~a~~~ 182 (384)
|..++...+.+.+.+... ..-+|+..||+||-=. ..+.+. ..+|+|+|+|+.+++.|++-
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 666766666666554322 2359999999999533 333332 23799999999999999863
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.54 E-value=0.059 Score=49.29 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~--~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~ 199 (384)
.+..+.||||--|+++.+|.+.+. .+++.|+++.-++.|.+++..+ +.+++..+|.+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~ 79 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV 79 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence 445699999999999999999853 8999999999999999988754 3788888998654
No 251
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.51 E-value=0.028 Score=52.44 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=44.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH 200 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~ 200 (384)
..++|+|||||.=-++...... ++.++|+|+|..+++.+...+... .+..+...|...-+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 4679999999999998876665 468999999999999998876533 46777777877654
No 252
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.42 E-value=0.021 Score=58.06 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcC--CCC--CEEEEEcCcchHHHHHHHHcCCcEEEE---eCCHHHHHHHHHH
Q 016715 127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAI---EKDQHMVGLVRER 182 (384)
Q Consensus 127 ~~~~~~il~~l~~--~~~--~~VLEIG~G~G~lt~~La~~~~~V~av---E~d~~~~~~a~~~ 182 (384)
...++.|.+.+.. ..+ ..+||||||+|.++++|.+++..++.+ |..+..++.|.++
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence 4667777777765 222 479999999999999999997654444 3444556666554
No 253
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.028 Score=48.11 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchh
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~ 202 (384)
.+-++..+..+..++..+.+|+|+|.|..-...++.|. .-+|+|+++-++.+++-+.-. .....+...|.-+.++.
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 34456667777767767899999999999999999884 899999999999988765422 24678888888887765
Q ss_pred h
Q 016715 203 S 203 (384)
Q Consensus 203 ~ 203 (384)
+
T Consensus 138 d 138 (199)
T KOG4058|consen 138 D 138 (199)
T ss_pred c
Confidence 3
No 254
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.30 E-value=0.14 Score=48.57 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=34.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHH
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~ 178 (384)
...+||--|||.|.|+..++.+|..+.|.|.|--|+-.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~ 93 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA 93 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH
Confidence 35689999999999999999999999999999988644
No 255
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.20 E-value=0.049 Score=51.48 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHhcCC-CCCEEEEEcCcchH--HHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCC--eEEEEccc
Q 016715 125 LNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDF 196 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~-~~~~VLEIG~G~G~--lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~--v~~~~gD~ 196 (384)
.+...+.+.+..+.-. .-...||||||.-+ .+..+++. .++|+-||.|+-.+++++..+...++ ..++++|+
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~ 130 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCC
Confidence 3445666667766555 34689999999643 35566654 67999999999999999999887766 89999999
Q ss_pred cccc
Q 016715 197 VKCH 200 (384)
Q Consensus 197 ~~~~ 200 (384)
.+..
T Consensus 131 r~p~ 134 (267)
T PF04672_consen 131 RDPE 134 (267)
T ss_dssp T-HH
T ss_pred CCHH
Confidence 8753
No 256
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.87 E-value=0.043 Score=49.92 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCC-CCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 128 EINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 128 ~~~~~il~~l~~~~-~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
+=++.|++++.-.+ +..|-|.|||.+.++..+. .+.+|...|+-.. |-.++.+|+.++|+++
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~~--- 120 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLED--- 120 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--T---
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCCC---
Confidence 34678888887554 4699999999999996653 4468999997521 2247789999999876
Q ss_pred hHHhhhccCCCcceEeeccCc
Q 016715 207 SLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+..|++|..+..
T Consensus 121 ---------~svDv~VfcLSL 132 (219)
T PF05148_consen 121 ---------ESVDVAVFCLSL 132 (219)
T ss_dssp ---------T-EEEEEEES--
T ss_pred ---------CceeEEEEEhhh
Confidence 678999877654
No 257
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.86 E-value=0.066 Score=47.74 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEc-cccccchhhhhhhHHhhhccC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~g-D~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++++|||+||.+|..+....++ ...|.|||+- .+....++.++.+ |+.+......++... ..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~~Ga~~i~~~dvtdp~~~~ki~e~l----p~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPPEGATIIQGNDVTDPETYRKIFEAL----PN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCCCCcccccccccCCHHHHHHHHHhC----CC
Confidence 47899999999999999999887 3479999974 2222246777777 766644332222111 22
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
...|+|++++.-
T Consensus 135 r~VdvVlSDMap 146 (232)
T KOG4589|consen 135 RPVDVVLSDMAP 146 (232)
T ss_pred CcccEEEeccCC
Confidence 567899998643
No 258
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.1 Score=51.17 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=57.2
Q ss_pred CEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC-Ccce
Q 016715 143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS-GFAK 220 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~-~~d~ 220 (384)
-+++|+.||.|.+..-+...|.+ +.++|+|+..++..+.+.. ...++.+|..++..... .. .+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~~----------~~~~~Dv 70 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEAL----------RKSDVDV 70 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhhc----------cccCCCE
Confidence 57999999999999999988875 6699999999999988874 25677788877665431 12 6899
Q ss_pred EeeccCc
Q 016715 221 VVANIPF 227 (384)
Q Consensus 221 Vv~NlPy 227 (384)
+++.+|=
T Consensus 71 ligGpPC 77 (328)
T COG0270 71 LIGGPPC 77 (328)
T ss_pred EEeCCCC
Confidence 9998874
No 259
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.50 E-value=0.06 Score=51.68 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=54.2
Q ss_pred EEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCCC---CeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (384)
Q Consensus 146 LEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (384)
+|||.|.-.+-..+-.+ +...+++|+|+..++.|.++...++ .+.+++....+..+.+...+ .....||.
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-----~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-----ESEIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-----CccceeeE
Confidence 78888877666555443 6689999999999999999887543 56777665544333221100 11245899
Q ss_pred EeeccCcccc
Q 016715 221 VVANIPFNIS 230 (384)
Q Consensus 221 Vv~NlPy~i~ 230 (384)
+.+|+||.-.
T Consensus 182 cMcNPPFfe~ 191 (419)
T KOG2912|consen 182 CMCNPPFFEN 191 (419)
T ss_pred EecCCchhhc
Confidence 9999999554
No 260
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=0.14 Score=46.27 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=68.1
Q ss_pred HHHHHHHHHh---cCCCCCEEEEEcCcchHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchh
Q 016715 128 EINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 128 ~~~~~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (384)
.+.+.|+.-+ .+.+|++||=+|+-+|+....++.- + ..++|||.+++....+-..+..-+|+--+.+|+-...--
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKY 139 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHh
Confidence 4556666544 4678999999999999999999987 3 479999999998887777666557999999998764322
Q ss_pred hhhhhHHhhhccCCCcceEeeccC
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
. +-.+..|+|+.+..
T Consensus 140 ~---------~~Ve~VDviy~DVA 154 (231)
T COG1889 140 R---------HLVEKVDVIYQDVA 154 (231)
T ss_pred h---------hhcccccEEEEecC
Confidence 1 12256888888754
No 261
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.21 E-value=0.3 Score=50.12 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCEEEEEcCcchHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh----hhHHhhh-ccC
Q 016715 142 GDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSS 215 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~-V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~----~~~~~~~-~~~ 215 (384)
.-+++|+.||.|.++..+-..|.+ |.++|+|+.+.+-.+.++...+...++.+|+.++...+.. .+..... ...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI 167 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence 348999999999999999888875 6799999999998888764334556677888887643110 0000000 012
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|++++.+|=
T Consensus 168 p~~DvL~gGpPC 179 (467)
T PRK10458 168 PDHDVLLAGFPC 179 (467)
T ss_pred CCCCEEEEcCCC
Confidence 457899988763
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.85 E-value=0.12 Score=47.15 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFA 184 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~avE~d~~~~~~a~~~~~ 184 (384)
..+-++.|-.||.|++.-.+.-. -..|+|-|+|+++++.|++|+.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 34458999999999998776543 2389999999999999987753
No 263
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.71 E-value=0.19 Score=49.50 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=35.8
Q ss_pred CCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~ 181 (384)
.+-+.|+|+|+|.|+++..|+-. |..|+|||-|..+.+.|+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34578999999999999999876 7799999999888776654
No 264
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.67 E-value=0.044 Score=54.52 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC---C-CeEEEEccccccc
Q 016715 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKCH 200 (384)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~---~-~v~~~~gD~~~~~ 200 (384)
.++|+.|.|+.||.|-+...++..++.|++-|.+++++++++.++..+ + +++++..|+.++-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 357899999999999999999999999999999999999999998743 3 5899988886643
No 265
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.26 Score=48.41 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=46.7
Q ss_pred cccCCHHHHH--------HHHHHh---cCCCCCEEEEEcCcchHHHHHHHHc----------CCcEEEEeCCHHHHHHHH
Q 016715 122 HYMLNSEIND--------QLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR 180 (384)
Q Consensus 122 ~fl~~~~~~~--------~il~~l---~~~~~~~VLEIG~G~G~lt~~La~~----------~~~V~avE~d~~~~~~a~ 180 (384)
.|++.|++-. .+++.. .....-.++|||+|.|.+..-+++. ..++..||+|+++.+.-+
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 4888776543 233332 2223457999999999999887753 358999999999999888
Q ss_pred HHhcC
Q 016715 181 ERFAS 185 (384)
Q Consensus 181 ~~~~~ 185 (384)
++++.
T Consensus 127 ~~L~~ 131 (370)
T COG1565 127 ETLKA 131 (370)
T ss_pred HHHhc
Confidence 88764
No 266
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.63 E-value=0.24 Score=46.49 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=35.0
Q ss_pred CCEEEEEcCcchHHHHHHHHc----------CCcEEEEeCCHHHHHHHHHHhcC
Q 016715 142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS 185 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~----------~~~V~avE~d~~~~~~a~~~~~~ 185 (384)
.-+|+|+|+|+|.++.-+++. ..+++.||+++.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 359999999999999988864 13799999999999988888764
No 267
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.61 E-value=0.026 Score=53.73 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcchHHHH-HHHHcCC-cEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcccccc
Q 016715 141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~-~La~~~~-~V~avE~d~~~~~~a~~~~~~~~---~v~~~~gD~~~~ 199 (384)
.+..|+|+.+|.||+|. .+...|+ .|+|+|.+|..++.++.++..+. +..+++||--..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~ 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence 35789999999999999 7777776 79999999999999999886542 345566665444
No 268
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.49 E-value=0.097 Score=49.02 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCC-CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhh
Q 016715 129 INDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 129 ~~~~il~~l~~~~~-~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~ 207 (384)
=++.|++++...++ ..|-|+|||-+-++. ..-.+|+..|+-+ .|-+++.+|+.++|+++
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d---- 226 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLED---- 226 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCcc----
Confidence 46778888876544 588999999988775 3345799988641 25568889999999876
Q ss_pred HHhhhccCCCcceEeeccCc
Q 016715 208 LFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy 227 (384)
...|++|..+..
T Consensus 227 --------~svDvaV~CLSL 238 (325)
T KOG3045|consen 227 --------ESVDVAVFCLSL 238 (325)
T ss_pred --------CcccEEEeeHhh
Confidence 678888876654
No 269
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.92 E-value=0.37 Score=42.27 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcchHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcc
Q 016715 119 LGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195 (384)
Q Consensus 119 ~gq~fl~~~~~~~~il~~l~~--~~~~~VLEIG~G~G~lt~~La-~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD 195 (384)
+.| |+-+++.++.+++.+.- .++.+|+=|||=+-+....-. ..+.+++..|+|.++.... ++ +++.-|
T Consensus 2 lsQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD 72 (162)
T PF10237_consen 2 LSQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYD 72 (162)
T ss_pred ccc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECC
Confidence 346 78888888888887754 456799999986555443331 1356899999998875432 13 455555
Q ss_pred ccccchhhhhhhHHhhhccCCCcceEeeccCccccHHHH
Q 016715 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~~~il 234 (384)
..+.. .+... ..+.+|+||.++|| ++.++.
T Consensus 73 ~~~p~---~~~~~-----l~~~~d~vv~DPPF-l~~ec~ 102 (162)
T PF10237_consen 73 YNEPE---ELPEE-----LKGKFDVVVIDPPF-LSEECL 102 (162)
T ss_pred CCChh---hhhhh-----cCCCceEEEECCCC-CCHHHH
Confidence 44321 11111 13689999999999 666664
No 270
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.73 E-value=0.1 Score=42.27 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhc----CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCC
Q 016715 127 SEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172 (384)
Q Consensus 127 ~~~~~~il~~l~----~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d 172 (384)
-.+++.++..-. ..+...-+|||||.|-|...|.+.|..=.|+|.-
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 344455544332 1234578999999999999999999999999964
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.69 E-value=0.15 Score=46.33 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=47.1
Q ss_pred ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHH-HHHhcCCCCe
Q 016715 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLV-RERFASIDQL 189 (384)
Q Consensus 117 ~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a-~~~~~~~~~v 189 (384)
.|.|...+..|.-...+-+.+---+.+.|+|+|.=.|......|+. .++|+|||+|.+..... .+...-.++|
T Consensus 8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI 87 (206)
T ss_dssp EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence 4667666666665544444443224579999999888888766652 35999999975544322 2211112599
Q ss_pred EEEEccccccch
Q 016715 190 KVLQEDFVKCHI 201 (384)
Q Consensus 190 ~~~~gD~~~~~~ 201 (384)
++++||..+...
T Consensus 88 ~~i~Gds~d~~~ 99 (206)
T PF04989_consen 88 TFIQGDSIDPEI 99 (206)
T ss_dssp EEEES-SSSTHH
T ss_pred EEEECCCCCHHH
Confidence 999999887653
No 272
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.61 E-value=0.5 Score=49.09 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=69.2
Q ss_pred cCCCcccCCHHHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHHc---C---CcEEEEeCCHHHHHHHHHHhc--CC-
Q 016715 118 SLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFA--SI- 186 (384)
Q Consensus 118 ~~gq~fl~~~~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~~---~---~~V~avE~d~~~~~~a~~~~~--~~- 186 (384)
.-|+ |.+...++..+.+.+.+. ++..|.|.-||+|.+.....+. + ..+++-|....+...++.+.. ..
T Consensus 193 ~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~ 271 (501)
T TIGR00497 193 SGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID 271 (501)
T ss_pred cCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence 3455 778889998888877654 5678999999999987654431 2 368999999999999998742 11
Q ss_pred -CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCccc
Q 016715 187 -DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (384)
Q Consensus 187 -~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (384)
+......+|-+.-+ + +. ....+|.|++|+||..
T Consensus 272 ~~t~~~~~~dtl~~~--d----~~----~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 272 YANFNIINADTLTTK--E----WE----NENGFEVVVSNPPYSI 305 (501)
T ss_pred ccccCcccCCcCCCc--c----cc----ccccCCEEeecCCccc
Confidence 23344455544421 1 11 1245899999999954
No 273
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.57 E-value=0.62 Score=38.99 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=44.7
Q ss_pred CCEEEEEcCcch-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715 142 GDIVLEIGPGTG-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (384)
Q Consensus 142 ~~~VLEIG~G~G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (384)
..+|+|||-|.= ..+..|.+.|..|+++|+++. .+. .++.++.-|+.+-++.- ....|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l~i-----------Y~~a~l 73 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNLEI-----------YEGADL 73 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HHH-----------HTTEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCHHH-----------hcCCcE
Confidence 459999999974 445566667999999999988 111 36778888988865431 145788
Q ss_pred Eee-ccCccccHHHHHHhc
Q 016715 221 VVA-NIPFNISTDVIKQLL 238 (384)
Q Consensus 221 Vv~-NlPy~i~~~il~~L~ 238 (384)
|.| ++|-.+..+++.--.
T Consensus 74 IYSiRPP~El~~~il~lA~ 92 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELAK 92 (127)
T ss_dssp EEEES--TTSHHHHHHHHH
T ss_pred EEEeCCChHHhHHHHHHHH
Confidence 876 788888887766433
No 274
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.44 E-value=0.26 Score=46.67 Aligned_cols=106 Identities=11% Similarity=0.179 Sum_probs=72.9
Q ss_pred CCcccCCCcccCCHHHHHHHHHHh--cCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcCC--C
Q 016715 114 FPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--D 187 (384)
Q Consensus 114 ~~~~~~gq~fl~~~~~~~~il~~l--~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~~--~ 187 (384)
.|.+.+.|.|.+..-.+.+++-.- +.-.|+.|+-+|- .--.+.+++-. ..+|..||+|++++....+..... +
T Consensus 123 ~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~ 201 (354)
T COG1568 123 EPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN 201 (354)
T ss_pred CcchhcccccccccceeeeeeeeccccCcCCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc
Confidence 566788999998887776554322 2335778999982 22223333333 458999999999999888766543 4
Q ss_pred CeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCcccc
Q 016715 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (384)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (384)
|++.+.-|..+.-..+ ....||+++.++|+.+.
T Consensus 202 ~ie~~~~Dlr~plpe~----------~~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 202 NIEAFVFDLRNPLPED----------LKRKFDVFITDPPETIK 234 (354)
T ss_pred chhheeehhcccChHH----------HHhhCCeeecCchhhHH
Confidence 7888888877643322 12689999999998665
No 275
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.40 E-value=0.34 Score=48.38 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhhhhhh
Q 016715 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 133 il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~~ 207 (384)
.+-.+.+++|.+|||..+-+|.=|.++|.. -..|+|.|.+..-+..++.++... .|..+.+.|..+++...
T Consensus 233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~---- 308 (460)
T KOG1122|consen 233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE---- 308 (460)
T ss_pred eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc----
Confidence 344567889999999999999999888876 347999999999999999887643 47888889998765332
Q ss_pred HHhhhccCCCcceEeeccCc
Q 016715 208 LFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy 227 (384)
-.+.||.|..+-|=
T Consensus 309 ------~~~~fDRVLLDAPC 322 (460)
T KOG1122|consen 309 ------FPGSFDRVLLDAPC 322 (460)
T ss_pred ------cCcccceeeecCCC
Confidence 12479999887774
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.83 E-value=0.17 Score=45.74 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=45.9
Q ss_pred CEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcC---------CCCeEEEEccccccc
Q 016715 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---------IDQLKVLQEDFVKCH 200 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~~~~---------~~~v~~~~gD~~~~~ 200 (384)
-...|||||-|.+...|+.. ..-++|+||-....++.++++.. ..|+.+++.++..+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l 130 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL 130 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc
Confidence 46899999999999999988 34688999998888888776531 247788888777653
No 277
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=91.66 E-value=1.3 Score=42.40 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-C---CcEEEEeCCHHHHHHHHHHhcCC--CCe-EEEEcccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-G---ATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKC 199 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~---~~V~avE~d~~~~~~a~~~~~~~--~~v-~~~~gD~~~~ 199 (384)
..-+||||-||.|..-.-.+.. . ..|...|.++..++..++.++.. .++ +|.++|+.+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 4459999999999987766654 2 47999999999999999887653 355 9999998874
No 278
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.64 E-value=0.94 Score=43.16 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~ 185 (384)
..+..+..+++.. ...+++.|||.-+|+|....+....+...+++|+++..++.+.+++..
T Consensus 206 ~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 206 QKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 3456777788877 566899999999999999999999999999999999999999998764
No 279
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=91.62 E-value=1.2 Score=40.72 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhc-CCCCeEEEEccccccchhhhhhh
Q 016715 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 130 ~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~~~~ 207 (384)
.....+.+. .+|.+||+||-|.|.....+.+... +-+-||.+++.++..+..-- ...||.++.|-..+..-.
T Consensus 91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~----- 164 (271)
T KOG1709|consen 91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT----- 164 (271)
T ss_pred HHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc-----
Confidence 333444444 5688999999999999998888744 77889999999999887642 224898888866654211
Q ss_pred HHhhhccCCCcceEeec
Q 016715 208 LFERRKSSSGFAKVVAN 224 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~N 224 (384)
+ ..+.||-|+-+
T Consensus 165 L-----~d~~FDGI~yD 176 (271)
T KOG1709|consen 165 L-----PDKHFDGIYYD 176 (271)
T ss_pred c-----cccCcceeEee
Confidence 1 12568888754
No 280
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=91.03 E-value=0.52 Score=46.02 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=47.9
Q ss_pred CEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~ 199 (384)
...+|+|.|.|.++..+...-.+|-++|.|...+-.++..+. ++|+.+.||..+-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence 789999999999999999976689999999999988888775 4588888988764
No 281
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.91 E-value=0.16 Score=40.61 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=23.5
Q ss_pred EEEcCcchHHHHHHHHc---C--CcEEEEeCCHH---HHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 146 LEIG~G~G~lt~~La~~---~--~~V~avE~d~~---~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
||||+..|..|..+++. + .+++++|..+. ..+.+++ ....++++++++|..+.-. . + ...+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-~----~-----~~~~ 69 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-S----L-----PDGP 69 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-H----H-----HH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-H----c-----CCCC
Confidence 79999999999888864 2 27999999994 3334333 2223489999999976421 1 1 1257
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
+|.++-+-
T Consensus 70 ~dli~iDg 77 (106)
T PF13578_consen 70 IDLIFIDG 77 (106)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 88888664
No 282
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.42 E-value=1.9 Score=42.35 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=59.6
Q ss_pred hcCCCCCEEEEEcCc-chHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcc-ccccchhhhhhhHHhhhc
Q 016715 137 AAVQEGDIVLEIGPG-TGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQED-FVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 137 l~~~~~~~VLEIG~G-~G~lt~~La~-~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD-~~~~~~~~~~~~~~~~~~ 213 (384)
.+..+|++|+=+|+| .|.++..+++ .|++|+++|.+++-.+.|++.-+ -.++... ..... .
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~~~~~~~--~---------- 225 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSSDSDALE--A---------- 225 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcCCchhhH--H----------
Confidence 456789999988887 4677777777 49999999999999999887632 2344432 11111 1
Q ss_pred cCCCcceEeeccCccccHHHHHHhcccCCC
Q 016715 214 SSSGFAKVVANIPFNISTDVIKQLLPMGDI 243 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~ 243 (384)
..+.+|.|+...|..-..+.+..|..+|.+
T Consensus 226 ~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~ 255 (339)
T COG1064 226 VKEIADAIIDTVGPATLEPSLKALRRGGTL 255 (339)
T ss_pred hHhhCcEEEECCChhhHHHHHHHHhcCCEE
Confidence 012388888776633344556666666654
No 283
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.25 E-value=1.4 Score=44.05 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=65.4
Q ss_pred CEEEEEcCcc-hHHHHHH-HHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 143 DIVLEIGPGT-GSLTNVL-LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 143 ~~VLEIG~G~-G~lt~~L-a~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
.+||=||||. |...+.. ++.+ .+|+..|.+.+-++.+..... ++++.+.-|+.+.+--. .++ ..+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~---~li------~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALV---ALI------KDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHH---HHH------hcCC
Confidence 4689999964 4444333 4445 699999999888888776643 37899999998875321 111 4569
Q ss_pred eEeeccCccccHHHHHHhcccCCCee
Q 016715 220 KVVANIPFNISTDVIKQLLPMGDIFS 245 (384)
Q Consensus 220 ~Vv~NlPy~i~~~il~~L~~~g~~~~ 245 (384)
+||+-+|++....+++...+.|--+.
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~yv 96 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDYV 96 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCEE
Confidence 99999999888888887777665443
No 284
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.20 E-value=0.57 Score=42.41 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCEEEEEcCcchHHH----HHHHHc-----C--CcEEEEeCCHHHHHHHHH
Q 016715 141 EGDIVLEIGPGTGSLT----NVLLNA-----G--ATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~-----~--~~V~avE~d~~~~~~a~~ 181 (384)
..-+|+..||++|.=. ..+.+. + .+++|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 3458999999999643 333341 2 389999999999999985
No 285
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.77 E-value=0.89 Score=44.80 Aligned_cols=89 Identities=24% Similarity=0.253 Sum_probs=62.3
Q ss_pred HhcCCCCCEEEEEcCcchHHHHHHHHcCC------cEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhh
Q 016715 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~------~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~ 207 (384)
.++++++++|||..+-+|.=|+.|.+... .|++-|.|..-+..+...... .+++.+...|+...+-...- +
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-D 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-c
Confidence 45678999999999999999999988633 799999999888887776643 24666777676655422100 0
Q ss_pred HHhhhccCCCcceEeeccCc
Q 016715 208 LFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy 227 (384)
+-. ...-.||.|.++.|=
T Consensus 229 ~~~--~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 229 GND--KEQLKFDRVLVDVPC 246 (375)
T ss_pred Cch--hhhhhcceeEEeccc
Confidence 000 022469999988774
No 286
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.67 E-value=0.65 Score=46.14 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhh
Q 016715 139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~ 203 (384)
..++..++|+|||.|....+++.. ++.+++++.++.-+......... ...-.++.+|+.+.++++
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED 176 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc
Confidence 456778999999999999999987 57999999998877766654332 123344888999998876
No 287
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.57 E-value=0.67 Score=45.98 Aligned_cols=111 Identities=12% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH----------hcC-CCCeEE
Q 016715 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKV 191 (384)
Q Consensus 125 ~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~----------~~~-~~~v~~ 191 (384)
+.++-+..+++.+.+.+++.-.|+|.|-|.+...++..+ .+=+|+|+.....+.+..+ +.. ...++.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 556777888999999999999999999999998888763 3677888765443333221 222 236889
Q ss_pred EEccccccchhhhhhhHHhhhccCCCcceEeec-cCc------cccHHHHHHhcccCCCee
Q 016715 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF------NISTDVIKQLLPMGDIFS 245 (384)
Q Consensus 192 ~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy------~i~~~il~~L~~~g~~~~ 245 (384)
++|++..-.....+. ...++|+.| ..| .+. .++.+++.+-++++
T Consensus 256 i~gsf~~~~~v~eI~---------~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQ---------TEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred cccccCCHHHHHHHh---------hcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEec
Confidence 999999876554322 344566554 444 222 66677766655543
No 288
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.04 E-value=1 Score=45.83 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=52.1
Q ss_pred EEEEEcCcchHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHh-cCCCCeEEEEccccccchhh
Q 016715 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~avE~d~~~~~~a~~~~-~~~~~v~~~~gD~~~~~~~~ 203 (384)
++|.+|||.-.++..+-+-|. .|+.+|+|+-.++...... ...+-.++...|+..+.+++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence 899999999999999988876 7999999999998877765 34457899999999999877
No 289
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=88.72 E-value=1.3 Score=36.08 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 334 rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
..|.+..+|..++ +......++..+|++++.+..+|+.+|+..|.+.+++
T Consensus 9 ~~k~i~~aLt~IyGIG~~~A~~Ic~~lgi~~~~~~~~Ls~~~i~~l~~~i~~ 60 (107)
T PF00416_consen 9 GNKPIYIALTKIYGIGRRKAKQICKKLGINPNKKVGDLSDEQIDKLRKIIEK 60 (107)
T ss_dssp TSSBHHHHHTTSTTBCHHHHHHHHHHTTS-SSSBTTTSTHHHHHHHHHHHHT
T ss_pred CCcchHhHHhhhhccCHHHHHHHHHHcCCChhhhcccCCHHHHHHHHHHHHH
Confidence 4678888888876 4555678899999999999999999999999988764
No 290
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.66 E-value=1 Score=36.39 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHc---C-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715 150 PGTGSLTNVLLNA---G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (384)
Q Consensus 150 ~G~G~lt~~La~~---~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~ 201 (384)
||.|.++..+++. + .+|+.+|.|+..++.+++. .+.++.||+.+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~ 54 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEV 54 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhH
Confidence 6667788777764 4 4899999999998888765 47899999988653
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.44 E-value=1 Score=41.85 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=57.5
Q ss_pred hcCCCCCEEEEEcCcchHHHHHHHHc-CC--cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-GA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~-~~--~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
+.++++.+||=+|+++|+.-...... |. -|+|||.++..=..+-.-...-+|+.-+..|+....--- -
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR---------m 222 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR---------M 222 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------e
Confidence 34678999999999999999888886 43 699999998655544433333368888888886532110 0
Q ss_pred cCCCcceEeeccCc
Q 016715 214 SSSGFAKVVANIPF 227 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy 227 (384)
..+..|+|+++++-
T Consensus 223 lVgmVDvIFaDvaq 236 (317)
T KOG1596|consen 223 LVGMVDVIFADVAQ 236 (317)
T ss_pred eeeeEEEEeccCCC
Confidence 12567899998764
No 292
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=88.35 E-value=0.77 Score=43.03 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=48.9
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceEeecc
Q 016715 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 146 LEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
|..-+|+-.+++.+++...+.+.+|+.+.-.+.+++++....++++++.|+.+.-.... + ....--+|+.++
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~all----P----P~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALL----P----PPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-----S-----TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhC----C----CCCCCeEEEECC
Confidence 88999999999999988889999999999999999998876799999999988532210 0 112345788999
Q ss_pred CccccHHH
Q 016715 226 PFNISTDV 233 (384)
Q Consensus 226 Py~i~~~i 233 (384)
||...++.
T Consensus 134 pYE~~~dy 141 (245)
T PF04378_consen 134 PYEQKDDY 141 (245)
T ss_dssp ---STTHH
T ss_pred CCCCchHH
Confidence 99877654
No 293
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.06 E-value=4.5 Score=37.33 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.++|=+|++ |.++..+++ +|.+|++++.++...+.+.+..... ++.++.+|+.+..--....+... ...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERF 84 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence 356789988875 666665554 4889999999987766655544322 56888899886542111111111 012
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.||.|..
T Consensus 85 ~~~d~vi~~ag 95 (264)
T PRK12829 85 GGLDVLVNNAG 95 (264)
T ss_pred CCCCEEEECCC
Confidence 46788887653
No 294
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Most damage to bases in DNA is repaired by the base excision repair pathway []. These enzymes are primarily from bacteria, and have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC). Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines [, ]. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above (3.2.2 from EC, 4.2.99.18 from EC), but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine []. These protein contains three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger []. The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to the helical axis of the DNA. Residues that contact DNA are located in the catalytic domain and in a beta-hairpin loop formed by the zinc finger []. This entry represents the central domain containing the DNA-binding helix-two turn-helix domain [].; GO: 0003684 damaged DNA binding, 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0008270 zinc ion binding, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds, 0006289 nucleotide-excision repair; PDB: 3GQ3_A 3JR5_A 3SAT_A 3GPX_A 2F5Q_A 3SBJ_A 3U6S_A 3SAU_A 3SAR_A 2F5P_A ....
Probab=87.47 E-value=1.3 Score=34.95 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=42.6
Q ss_pred HHHHhcCCCchHHHHHhh--hc-C--hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 327 VSSAFNGKRKMLRKSLQH--LC-T--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 327 ~~~~F~~rrk~l~~~l~~--~~-~--~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
+...+.++++.++..|.. .+ + .-...++|=.++|.|..++.+|+.+++.+|+..+..
T Consensus 15 ~~~~l~~~~~~ik~~LlDQ~~iaGiGNiy~~EiLf~a~i~P~~~~~~L~~~~~~~l~~~~~~ 76 (92)
T PF06831_consen 15 FAERLRKRRRPIKAALLDQSVIAGIGNIYADEILFRAGIHPERPASSLSEEELRRLHEAIKR 76 (92)
T ss_dssp HHHHHHTCCSBHHHHHHCTTTSTT--HHHHHHHHHHTTB-TTSBGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHhCCCccccCcHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 445566789999998842 22 2 222378888999999999999999999999987654
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.36 E-value=4.4 Score=40.27 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=39.7
Q ss_pred HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 016715 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~ 182 (384)
......++.+||.+|||. |.++..+++. |. +|++++.++...+.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 344566788999999998 8888888886 65 599999999999988875
No 296
>PLN02253 xanthoxin dehydrogenase
Probab=87.29 E-value=4 Score=38.29 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++++|=.|++ |.++..++ +.|++|+.++.++...+.+.+.+....++.++.+|..+...-+.+.+.... ..+
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~--~~g 93 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVD--KFG 93 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHH--HhC
Confidence 35678888854 55555544 458899999998776666555543334688899998875432222211111 124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.+|.|.
T Consensus 94 ~id~li~~A 102 (280)
T PLN02253 94 TLDIMVNNA 102 (280)
T ss_pred CCCEEEECC
Confidence 678888764
No 297
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=87.19 E-value=0.78 Score=42.78 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHh
Q 016715 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 128 ~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~ 183 (384)
.++..|.+.+...+..+++|..||+|..+..+...+..|+.-|+++..+...+..+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 45677777776535789999999999999999888889999999999888777444
No 298
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=87.15 E-value=0.46 Score=45.17 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=57.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (384)
.+..++|+|||.|-.+..= -.+.+++.|+...++..++.. +...+..+|++++++.+ ..+|.
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~------------~s~d~ 106 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFRE------------ESFDA 106 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----CCceeehhhhhcCCCCC------------Ccccc
Confidence 4778999999999776321 234689999998888887754 22268899999999875 45565
Q ss_pred EeeccC----------ccccHHHHHHhcccCCCee
Q 016715 221 VVANIP----------FNISTDVIKQLLPMGDIFS 245 (384)
Q Consensus 221 Vv~NlP----------y~i~~~il~~L~~~g~~~~ 245 (384)
.++--- ..+..+.++.+.++|....
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 543211 1223355667777776443
No 299
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.70 E-value=2.1 Score=40.53 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=44.2
Q ss_pred CCCCCEEEEEcCcchHHHHHHHHcC-------CcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhh
Q 016715 139 VQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (384)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~ 203 (384)
+.+...++|.|||.|.|+..++..- ..++.||....-. ..-..+... +.++=+..|+.++++..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~ 89 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSK 89 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhh
Confidence 3466799999999999999998752 3789999753211 222222222 35777888999988764
No 300
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.49 E-value=4.3 Score=33.45 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=49.3
Q ss_pred CEEEEEcCcc-hHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715 143 DIVLEIGPGT-GSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (384)
Q Consensus 143 ~~VLEIG~G~-G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (384)
.+|+|||-|- =..+..|+++|..|+++|+++. .+. ..++++..|..+-...- ....|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~------~g~~~v~DDitnP~~~i-----------Y~~A~lI 74 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP------EGLRFVVDDITNPNISI-----------YEGADLI 74 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc------ccceEEEccCCCccHHH-----------hhCccce
Confidence 4899999885 3445677888999999999977 111 36788888988765431 1346777
Q ss_pred eec-cCccccHHHHH
Q 016715 222 VAN-IPFNISTDVIK 235 (384)
Q Consensus 222 v~N-lPy~i~~~il~ 235 (384)
.|- +|-.+.+.+++
T Consensus 75 YSiRpppEl~~~ild 89 (129)
T COG1255 75 YSIRPPPELQSAILD 89 (129)
T ss_pred eecCCCHHHHHHHHH
Confidence 764 45444444443
No 301
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.12 E-value=4.6 Score=37.56 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=48.2
Q ss_pred CCCEEEEEcCcch-HHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTG-SLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G-~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|+++| .++. .+++.|++|+.++.+++..+.+.+.....+.+.++.+|+.+..--..+.+.... ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAE--EW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHH--Hc
Confidence 4678999997652 4444 445568999999888654333333222223455777888765432222222221 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|.-
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 56899998853
No 302
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=86.08 E-value=1.3 Score=38.29 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=47.3
Q ss_pred HHHHHHHHHHh--cCCCchHHHHHhhhcC--hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715 321 KSFFSMVSSAF--NGKRKMLRKSLQHLCT--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 382 (384)
Q Consensus 321 ~~~~~~~~~~F--~~rrk~l~~~l~~~~~--~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~ 382 (384)
++|.++++.+- ....|.+.-+|..+++ ......+++.+|++++.++.+||.+|...|...++
T Consensus 4 ~~~~~m~rI~~~~i~~~k~i~~aLt~IyGIG~~~a~~Ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~ 69 (149)
T PRK04053 4 EEFKYIVRIAGTDLDGTKPVEYALTGIKGIGRRTARAIARKLGLDPNAKLGYLSDEEIEKIEEALE 69 (149)
T ss_pred hhhhhhHhhcCccCCCCCEEeeeccccccccHHHHHHHHHHcCcCCCCccCcCCHHHHHHHHHHHH
Confidence 35666665332 3446777778877763 44557889999999999999999999999998875
No 303
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=86.01 E-value=1.7 Score=39.12 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=59.4
Q ss_pred ccCCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhcCCCCeE
Q 016715 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLK 190 (384)
Q Consensus 117 ~~~gq~fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~~~~~~v~ 190 (384)
.|.|...+.++.-...+-+.+-....+.|+|+|.-.|..+...|.. | .+|+++|+|-.-+..+... .+++.
T Consensus 45 twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~ 121 (237)
T COG3510 45 TWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDIL 121 (237)
T ss_pred eEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeE
Confidence 4668888888776666666554445679999999999888777763 5 5999999986554333222 37899
Q ss_pred EEEccccccch
Q 016715 191 VLQEDFVKCHI 201 (384)
Q Consensus 191 ~~~gD~~~~~~ 201 (384)
++.|+..+...
T Consensus 122 f~egss~dpai 132 (237)
T COG3510 122 FIEGSSTDPAI 132 (237)
T ss_pred EEeCCCCCHHH
Confidence 99999877543
No 304
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=86.00 E-value=0.87 Score=39.52 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=48.3
Q ss_pred HHHHHHHHHHh--cCCCchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 321 KSFFSMVSSAF--NGKRKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 321 ~~~~~~~~~~F--~~rrk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
++|.++++.+- ....|.+.-+|..++ +......+++.+|+++++|+.+||.+|..+|.+.+++
T Consensus 9 ~~~~~mvrI~~~~l~~~K~v~~aLt~I~GIG~~~A~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 75 (154)
T PTZ00134 9 DDFQHILRILNTNVDGKRKVPYALTAIKGIGRRFAYLVCKKAGIDVTKRAGELTAEEIEKIVEIIAN 75 (154)
T ss_pred hhhhhhhhccCccCCCCCEEEEeecccccccHHHHHHHHHHcCcCcCCCcccCCHHHHHHHHHHHhc
Confidence 36777776543 334677777777765 3444578899999999999999999999999988863
No 305
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.98 E-value=5.3 Score=36.80 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++++|=.|++.|. ++..|++.|++|+.++.+++-++.+.+.+... .++..+.+|..+..--..+.+.... ..+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA--ELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH--HhC
Confidence 46789999976442 23344456899999999987776666555432 3677888888765422211111110 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6788888754
No 306
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.88 E-value=2.1 Score=40.66 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCEEEEEcCcchHH----HHHHHHc-------CCcEEEEeCCHHHHHHHHH
Q 016715 142 GDIVLEIGPGTGSL----TNVLLNA-------GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 142 ~~~VLEIG~G~G~l----t~~La~~-------~~~V~avE~d~~~~~~a~~ 181 (384)
.-+|+.+||+||-= +..|.+. ..+|+|.|+|...++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 45899999999953 3333333 2389999999999999874
No 307
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.48 E-value=6 Score=35.85 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~ 199 (384)
.+..||=+|+ +|.++..+++ .|.+|++++.++.-...+.+.+....++.++.+|+.+.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~ 66 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDE 66 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCH
Confidence 3568888884 5666666554 48899999998876665555443225688889998764
No 308
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.39 E-value=4.4 Score=38.95 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=62.7
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.|+.||==|.|.|- ++..++++|++++..|+++...+.-.+.+...+.+....+|..+.+.-....+-+. ...+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence 57789988888763 45566677999999999998887777766654578888899887653221111122 13467
Q ss_pred cceEeecc---C----ccccHHHHHH
Q 016715 218 FAKVVANI---P----FNISTDVIKQ 236 (384)
Q Consensus 218 ~d~Vv~Nl---P----y~i~~~il~~ 236 (384)
.+++|.|- | ++.+.+.+++
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHH
Confidence 88888773 1 2555555554
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.38 E-value=2.1 Score=41.58 Aligned_cols=48 Identities=31% Similarity=0.494 Sum_probs=40.6
Q ss_pred HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715 134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~ 181 (384)
....+.+.|.+||=+|+|+ |-+|...|+. |+ +|+.+|+++.-++.|++
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3445677899999999997 7788777776 65 89999999999999998
No 310
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.36 E-value=3.1 Score=42.12 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=48.5
Q ss_pred ccCCCcccCCHHHHHHHHHHhcC-CCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715 117 KSLGQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 117 ~~~gq~fl~~~~~~~~il~~l~~-~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~ 181 (384)
..|...|-+...+.+.++...+. .+|++|+=+|+|. |...+..++. |++|+.+|.++.-.+.|+.
T Consensus 176 ~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 176 SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred ccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 34454555666778888887765 4789999999997 6666656554 8899999999887776654
No 311
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=85.10 E-value=3.3 Score=38.78 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=71.3
Q ss_pred HHHHHHHHHhc-CCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh
Q 016715 128 EINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 128 ~~~~~il~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (384)
..++..++.+. .+++.. |..-||+--+++.+.+...++.++|+.+.=...++.++....++++..+|.....-..+
T Consensus 75 a~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L-- 151 (279)
T COG2961 75 AELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL-- 151 (279)
T ss_pred HHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC--
Confidence 44454444442 233333 89999999999999988889999999999999999999877799999999866432110
Q ss_pred hHHhhhccCCCcceEeeccCccccHHH
Q 016715 207 SLFERRKSSSGFAKVVANIPFNISTDV 233 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~~~i 233 (384)
+ ..+.--.|+.++||....+.
T Consensus 152 --P----P~erRglVLIDPPfE~~~eY 172 (279)
T COG2961 152 --P----PKERRGLVLIDPPFELKDEY 172 (279)
T ss_pred --C----CCCcceEEEeCCCcccccHH
Confidence 0 11334678899999777644
No 312
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.05 E-value=1.8 Score=40.77 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
.+|....|+|+-.|.-|-.|.+++-.|++||-- .|.+.+ ...+.|+-...|..++... ....|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng-~ma~sL----~dtg~v~h~r~DGfk~~P~------------r~~id 272 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG-PMAQSL----MDTGQVTHLREDGFKFRPT------------RSNID 272 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccc-hhhhhh----hcccceeeeeccCcccccC------------CCCCc
Confidence 478899999999999999999999999999954 333333 2336888888898887642 24678
Q ss_pred eEeecc---CccccHHHHHHhc
Q 016715 220 KVVANI---PFNISTDVIKQLL 238 (384)
Q Consensus 220 ~Vv~Nl---Py~i~~~il~~L~ 238 (384)
..|+++ |-.++.-+..||.
T Consensus 273 WmVCDmVEkP~rv~~li~~Wl~ 294 (358)
T COG2933 273 WMVCDMVEKPARVAALIAKWLV 294 (358)
T ss_pred eEEeehhcCcHHHHHHHHHHHH
Confidence 888875 4344433444443
No 313
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.89 E-value=8.5 Score=35.04 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
..+++|=.|+ +|.++..++ ++|.+|++++.++.-.+.+.+.... ..++.++.+|+.+...-....+.... ..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE--QF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 3467888885 455555444 4588999999988766555544432 24788899998875422211111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|.-
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 45788887653
No 314
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=84.87 E-value=1.1 Score=37.46 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.0
Q ss_pred CchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715 335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 382 (384)
Q Consensus 335 rk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~ 382 (384)
.|.+.-+|..++ +......+.+.+|++++.++.+|+.+|+..|.+.++
T Consensus 12 ~k~v~~aLt~i~GIG~~~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~ 61 (122)
T CHL00137 12 NKRIEYALTYIYGIGLTSAKEILEKANIDPDIRTKDLTDEQISALREIIE 61 (122)
T ss_pred CCEeeeeecccccccHHHHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHH
Confidence 355556666665 344456788999999999999999999999998875
No 315
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.81 E-value=2.1 Score=44.12 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCC---CCEEEEEcCcchHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEccc
Q 016715 128 EINDQLAAAAAVQE---GDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDF 196 (384)
Q Consensus 128 ~~~~~il~~l~~~~---~~~VLEIG~G~G~lt~~La~~------~~~V~avE~d~~~~~~a~~~~~-~~-~~v~~~~gD~ 196 (384)
.+...+++.....+ ...|.-+|+|-|-+.....+. .-++++||.+|.++-.++.... .. ++|+++.+|.
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 44444444433222 236788899999998666543 3389999999999988876432 22 4899999999
Q ss_pred cccchhhhhhhHHhhhccCCCcceEeec
Q 016715 197 VKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (384)
-+++.+. ...|++|+-
T Consensus 431 R~w~ap~------------eq~DI~VSE 446 (649)
T KOG0822|consen 431 RKWNAPR------------EQADIIVSE 446 (649)
T ss_pred cccCCch------------hhccchHHH
Confidence 9987542 356777754
No 316
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.69 E-value=0.66 Score=44.12 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--c-CCCCCEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHH
Q 016715 128 EINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG 177 (384)
Q Consensus 128 ~~~~~il~~l--~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~ 177 (384)
..+..+.+.+ . ...+++|||+|||+|.....+...+ ..+...|.+...++
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 4445555443 2 2368899999999999999988887 58999999987774
No 317
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.55 E-value=6.9 Score=36.02 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+++||=.|+ +|.++..+++ .|++|+.++.++.-.+.+.+.+... .++.++.+|+.+...-..+.+-.. ...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 4678998885 5666655554 5889999999987666555555432 357888889877542221111111 122
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.||.|..
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 318
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=84.53 E-value=0.99 Score=37.21 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=36.7
Q ss_pred chHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715 336 KMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 382 (384)
Q Consensus 336 k~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~ 382 (384)
|.+.-+|..++ +...-..+++++|+++++|+.+||.||...|-+.++
T Consensus 13 K~v~iALt~IyGIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~ 61 (121)
T COG0099 13 KRVVIALTYIYGIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQ 61 (121)
T ss_pred ceEeehhhhhccccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHH
Confidence 44444555554 344457889999999999999999999999988775
No 319
>PRK09072 short chain dehydrogenase; Provisional
Probab=84.52 E-value=8.2 Score=35.76 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
++.++|=.|++.|. ++..++++|++|++++.++.-.+.+...+....++.++.+|..+..--..+.+... ..+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcCC
Confidence 35678888866422 33445556899999999987776665554333478888999877543222221111 1246
Q ss_pred cceEeeccC
Q 016715 218 FAKVVANIP 226 (384)
Q Consensus 218 ~d~Vv~NlP 226 (384)
.|.+|.|..
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 788887743
No 320
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=84.44 E-value=0.94 Score=37.78 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=38.5
Q ss_pred CchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 335 rk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
.|.+.-+|..++ +......+++.+|++++++..+|+.+|+..|.+.+++
T Consensus 12 ~k~v~~aL~~I~GIG~~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 12 NKRVVIALTYIYGIGRTRAKEILAAAGIDPDTRVKDLTDEELDKIREEIDK 62 (122)
T ss_pred CcEEEeeecccccccHHHHHHHHHHhCcCcccccccCCHHHHHHHHHHHHh
Confidence 355556666665 3444567889999999999999999999999988763
No 321
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=84.16 E-value=3.2 Score=41.74 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHh-cCCCchHHHHHhhhcChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 320 TKSFFSMVSSAF-NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 320 ~~~~~~~~~~~F-~~rrk~l~~~l~~~~~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
.+++...+...+ ..++|++++.|..+.+..-+..+++.++++++++..+|+.+|...|.+.+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~ 331 (400)
T TIGR00275 267 EEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKN 331 (400)
T ss_pred HHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhC
Confidence 344544444333 4567899999998888888888999999999999999999999999988764
No 322
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.10 E-value=2.5 Score=42.34 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 016715 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (384)
Q Consensus 124 l~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~ 184 (384)
.-||++- .+.+++.++++||-|.+|.......|....++|+|||+++.....++-+++
T Consensus 21 WEDp~vD---~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 21 WEDPRVD---MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred cCCcHHH---HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 3455553 445667899999999777656555666556799999999998887776554
No 323
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.01 E-value=7.7 Score=35.64 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+++||=.| |+|.++..+++ .|++|++++.+++-++.+...+.. ..++.++.+|+.+..--..+..... ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE--TEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--Hhc
Confidence 467888888 44555555544 488999999998877666655432 2468889999876432111111111 112
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 324
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=83.93 E-value=7.5 Score=35.97 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=48.6
Q ss_pred EEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 144 IVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
+||=.|++. .++.. +++.|++|+.++.++.-++.+.+.+...+++.++.+|..+...-..+.+... ...+..|
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id 78 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGID 78 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCC
Confidence 467777654 34444 4456899999999988776666555433467888899876432221111111 1125678
Q ss_pred eEeeccC
Q 016715 220 KVVANIP 226 (384)
Q Consensus 220 ~Vv~NlP 226 (384)
++|.|.-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9887753
No 325
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.67 E-value=5 Score=37.03 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=47.0
Q ss_pred EEEEEcCcc--hHHHHHHHHcCCcEEEEeCCHHHHHHHHH-HhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcce
Q 016715 144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (384)
Q Consensus 144 ~VLEIG~G~--G~lt~~La~~~~~V~avE~d~~~~~~a~~-~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (384)
+++=||||. +.++..|.+.|.+|++||.|++.++.... .. ...++++|+.+...-.. .....+|.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L~~--------agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVLEE--------AGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHHHh--------cCCCcCCE
Confidence 567788885 44455666668999999999998877333 32 57889999987543210 12345777
Q ss_pred EeeccC
Q 016715 221 VVANIP 226 (384)
Q Consensus 221 Vv~NlP 226 (384)
+++-..
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 765443
No 326
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=83.52 E-value=1 Score=36.99 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.7
Q ss_pred CchHHHHHhhhcC--hHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHH
Q 016715 335 RKMLRKSLQHLCT--SLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIV 382 (384)
Q Consensus 335 rk~l~~~l~~~~~--~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~ 382 (384)
.|.+..+|..+++ ......+.+.+|+++++++.+|+.+|+..|.+.++
T Consensus 10 ~k~v~~aL~~i~GIG~~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~l~ 59 (113)
T TIGR03631 10 NKRVEIALTYIYGIGRTRARKILEKAGIDPDKRVKDLTEEELNAIREEIE 59 (113)
T ss_pred CCEEeeeeeeeecccHHHHHHHHHHhCcCcccccccCCHHHHHHHHHHHH
Confidence 3555566666553 34456788899999999999999999999998874
No 327
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=83.48 E-value=1.5 Score=39.49 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=30.5
Q ss_pred HHhcCCCCCEEEEEcCcchHHHHHHHHc-CC--cEEEEeCCH
Q 016715 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA--TVLAIEKDQ 173 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~--~V~avE~d~ 173 (384)
...+++++.+|+|+-+|.|+.|+.++.. |. .|+++-.++
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 3446678999999999999999999986 32 677765443
No 328
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.24 E-value=8.8 Score=35.14 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCC--CCeEEEEccccccchhh---hhhhHHhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRS---HMLSLFER 211 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~--~~v~~~~gD~~~~~~~~---~~~~~~~~ 211 (384)
++++||=.|+ +|.++..++ +.|++|++++.++.-.+.+.+.+... .++.++.+|....+..+ ....+..
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~- 88 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE- 88 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH-
Confidence 5778999985 566665554 44889999999987665555444322 36778888886443221 1111111
Q ss_pred hccCCCcceEeecc
Q 016715 212 RKSSSGFAKVVANI 225 (384)
Q Consensus 212 ~~~~~~~d~Vv~Nl 225 (384)
..+..|.||.|.
T Consensus 89 --~~~~id~vi~~A 100 (247)
T PRK08945 89 --QFGRLDGVLHNA 100 (247)
T ss_pred --HhCCCCEEEECC
Confidence 124678888764
No 329
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.88 E-value=3.6 Score=40.54 Aligned_cols=45 Identities=29% Similarity=0.502 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHh
Q 016715 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~ 183 (384)
..++++|+=+|||+ |.++..+++. |+ +|+++|.++.-++.|++..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 34555999999997 8888888876 54 8999999999999999864
No 330
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.86 E-value=9.4 Score=34.77 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=49.6
Q ss_pred CCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh-hhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~-~~~~~~~~~~~ 216 (384)
+.+||=+|++ |.++. .|+++|.+|++++.++.-.+.+...+....++.++.+|+.+...-... ..... ..+
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 80 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALE---RFG 80 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---HhC
Confidence 4578877764 44444 444568899999999876666555443333688899998775432211 11111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
.+|.||.|..
T Consensus 81 ~~d~vi~~ag 90 (251)
T PRK07231 81 SVDILVNNAG 90 (251)
T ss_pred CCCEEEECCC
Confidence 6788887754
No 331
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.85 E-value=9.4 Score=35.23 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.+++||=.|++. .++. .|++.|++|+.++.+++-.+.+.+.+.. ..++.++.+|..+...-..+.+... .
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 82 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE--E 82 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH--H
Confidence 467889888754 4444 4445689999999988777666655532 2367888899877532221111111 1
Q ss_pred cCCCcceEeecc
Q 016715 214 SSSGFAKVVANI 225 (384)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (384)
..+..|.+|.|.
T Consensus 83 ~~g~id~li~~a 94 (260)
T PRK07063 83 AFGPLDVLVNNA 94 (260)
T ss_pred HhCCCcEEEECC
Confidence 124678888774
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.81 E-value=12 Score=34.28 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 140 QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 140 ~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.++++||-.|+|+ |..+..+++. |.+|++++.++...+.++..- .-.++ |........... . .....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g----~~~~~--~~~~~~~~~~~~---~--~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG----ADHVI--DYKEEDLEEELR---L--TGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC----Cceec--cCCcCCHHHHHH---H--hcCCC
Confidence 6788999999985 6666666665 789999999988877775431 11111 111111111000 0 12356
Q ss_pred cceEeeccCc-cccHHHHHHhcccCC
Q 016715 218 FAKVVANIPF-NISTDVIKQLLPMGD 242 (384)
Q Consensus 218 ~d~Vv~NlPy-~i~~~il~~L~~~g~ 242 (384)
+|.++.+.+- ......+..+...|.
T Consensus 202 ~d~vi~~~~~~~~~~~~~~~l~~~G~ 227 (271)
T cd05188 202 ADVVIDAVGGPETLAQALRLLRPGGR 227 (271)
T ss_pred CCEEEECCCCHHHHHHHHHhcccCCE
Confidence 8999877654 444455555555544
No 333
>PRK08862 short chain dehydrogenase; Provisional
Probab=82.80 E-value=8.7 Score=35.14 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhh-hhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~ 215 (384)
.++.+|=.|++.|. ++..+++.|++|+.+..++..++.+.+.+.. ...+..+..|..+..--. .+..+.+ ..
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ---QF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 46789999988865 4555666799999999998877766555432 235666677766543211 1111111 11
Q ss_pred C-CcceEeecc
Q 016715 216 S-GFAKVVANI 225 (384)
Q Consensus 216 ~-~~d~Vv~Nl 225 (384)
+ ..|.+|.|.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 3 689998885
No 334
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=82.70 E-value=6.7 Score=36.83 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHc-CCcEEEEeCCHHHHHHHH
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVR 180 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~avE~d~~~~~~a~ 180 (384)
...+|||+|+|+|-.+...+.. +++|+.-|.-. .++.++
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~ 125 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLK 125 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHH
Confidence 3567999999999888888875 66777777543 333333
No 335
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.69 E-value=8.8 Score=35.64 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhh-hhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHM-LSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~-~~~~~~~~~ 214 (384)
++.++|=.|+ +|.++..++ ++|++|++++.+++-.+.+.+.+.. ..++.++.+|..+...-... ....+ .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 84 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE---A 84 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence 4678888885 455555544 4588999999988766655544432 23678888998775432211 11111 1
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.||.|.
T Consensus 85 ~~~id~vi~~A 95 (263)
T PRK07814 85 FGRLDIVVNNV 95 (263)
T ss_pred cCCCCEEEECC
Confidence 24678888764
No 336
>PRK08589 short chain dehydrogenase; Validated
Probab=82.41 E-value=10 Score=35.43 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+++++|=.|++.|. ++..|++.|++|+.++.++.. +.+.+.+.. ..++.++.+|..+..--..+.+.... ..+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE--QFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH--HcC
Confidence 46688888876442 233445568999999998443 333333322 23688888898765322211111111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|.-
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6788888753
No 337
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.37 E-value=10 Score=35.02 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=48.0
Q ss_pred CEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~~ 217 (384)
.+||=.|++ |.++..++ +.|++|+.++.+++.++.+.+.+...+++.++.+|+.+...-.. +..+.+ ..+.
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~g~ 78 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIA---AHGL 78 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH---hCCC
Confidence 467777764 45554444 45889999999987776655544322378888999877432111 111111 1245
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.+|.|.
T Consensus 79 id~lv~~a 86 (257)
T PRK07024 79 PDVVIANA 86 (257)
T ss_pred CCEEEECC
Confidence 78888774
No 338
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.20 E-value=9.2 Score=35.10 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+++||=.|++ |.++..+ ++.|++|+.++.++.-.+.+.+.+.. ..++.++.+|+.+..--..+.+... ...
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~ 82 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTI--AAY 82 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence 45788888864 4444444 44588999999988766555544432 2468889999877532111111111 112
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.||.|.-
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 339
>PRK07677 short chain dehydrogenase; Provisional
Probab=82.17 E-value=9.2 Score=35.15 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=47.6
Q ss_pred CEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 143 ~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
+++|=.|++.|. ++..+++.|++|++++.++.-.+.+.+.+.. ..++.++.+|..+...-..+.+.... ..+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE--KFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--HhCCc
Confidence 567877875542 2334445688999999988766665554432 24788888998664322111111110 12457
Q ss_pred ceEeecc
Q 016715 219 AKVVANI 225 (384)
Q Consensus 219 d~Vv~Nl 225 (384)
|.+|.|.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888764
No 340
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=82.13 E-value=1.4 Score=40.40 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=41.5
Q ss_pred CEEEEEcCcchHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715 143 DIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (384)
-++|||||=+...... ..+ .+|++||+++. .-.+.+.|+++.|++.. ..+.||+|
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~~---------~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ-------------HPGILQQDFMERPLPKN---------ESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC-------------CCCceeeccccCCCCCC---------cccceeEE
Confidence 5899999864443222 223 37999998741 33578999999987641 34689999
Q ss_pred eeccCc
Q 016715 222 VANIPF 227 (384)
Q Consensus 222 v~NlPy 227 (384)
+..+-.
T Consensus 109 s~SLVL 114 (219)
T PF11968_consen 109 SLSLVL 114 (219)
T ss_pred EEEEEE
Confidence 877654
No 341
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.08 E-value=10 Score=35.30 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++++|=.|++.|. ++..|++.|++|+.++.++.-++.+.+.+.. ..++.++.+|+.+..--+.+.+... ..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~---~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK---NI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH---hh
Confidence 46788888876432 3344555699999999998776666554432 2368889999887543222221111 12
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.+|.|.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4678888774
No 342
>PRK08226 short chain dehydrogenase; Provisional
Probab=82.02 E-value=10 Score=35.03 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.+.++|=.|+. |.++..++ +.|++|+.++.+....+.+.+......++.++.+|+.+...-+.+.+.... ..+
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~~ 81 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE--KEG 81 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 35688877775 55555554 458899999998765444433322234677888998775432222211111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|.-
T Consensus 82 ~id~vi~~ag 91 (263)
T PRK08226 82 RIDILVNNAG 91 (263)
T ss_pred CCCEEEECCC
Confidence 6788887643
No 343
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.88 E-value=9.6 Score=35.02 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++++|=.|+. |.++.. |++.|++|++++.++.-.+.+.+.+... .++.++.+|+.+...-+.+.+-.. ...
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 82 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERF 82 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 35678866663 444444 4455889999999987665555544322 367888999877543221111111 012
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.||.|.
T Consensus 83 ~~~d~vi~~a 92 (262)
T PRK13394 83 GSVDILVSNA 92 (262)
T ss_pred CCCCEEEECC
Confidence 4578888764
No 344
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.75 E-value=10 Score=35.48 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=49.8
Q ss_pred CCCEEEEEcCcc----h-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGT----G-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~----G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|+|. | .++..+++.|++|+.++.+....+.+.+.....+.+.++.+|+.+..--+.+.+.... ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK--VW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh--hc
Confidence 467889999864 3 2456666679999988877543333333322224566778888775432222221111 22
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|.+|.|.-+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 568999988643
No 345
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.73 E-value=2.3 Score=42.13 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcccc
Q 016715 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFV 197 (384)
Q Consensus 123 fl~~~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~ 197 (384)
++......-..+..+.+.+|..|+|+.|-.|.-|..++.. ..+++|.|.|+.-.+.++..+.. ...+...++|++
T Consensus 195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~ 274 (413)
T KOG2360|consen 195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL 274 (413)
T ss_pred eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence 4444444455666677888999999999999999988875 35899999999999988887653 346778899999
Q ss_pred cc
Q 016715 198 KC 199 (384)
Q Consensus 198 ~~ 199 (384)
..
T Consensus 275 ~t 276 (413)
T KOG2360|consen 275 NT 276 (413)
T ss_pred CC
Confidence 86
No 346
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.69 E-value=10 Score=34.57 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+.++|=.| |+|.++..+++ .|.+|+.++.++.-...+...+.. ..++.++.+|..+...-..+...... ..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS--AF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence 356788888 45566655554 588999999987665555444432 23667788888765432211111110 12
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|.||.|..+
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 457899877543
No 347
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.69 E-value=9.2 Score=35.96 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcc----h-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGT----G-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~----G-~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
+++.+|=.|++. | .++..|++.|++|+.++.+....+.+++.....+....+.+|+.+..--+.+.+... ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALE--KKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH--HHh
Confidence 467899999764 3 334555667999999887754433333332222233467788877543222211111 122
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|.-
T Consensus 84 g~iD~lVnnAG 94 (271)
T PRK06505 84 GKLDFVVHAIG 94 (271)
T ss_pred CCCCEEEECCc
Confidence 57899988753
No 348
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.67 E-value=8.8 Score=35.77 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=47.9
Q ss_pred CCCEEEEEcC-cchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGP-GTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~-G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|+ |++.++..++ +.|++|+....+....+.+++.....+....+.+|+.+..--+.+.+.... ..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK--HW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH--Hh
Confidence 4678999997 3444444444 568999887665444444444332223445678888775433222222211 22
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|.-
T Consensus 83 g~iD~lVnnAG 93 (261)
T PRK08690 83 DGLDGLVHSIG 93 (261)
T ss_pred CCCcEEEECCc
Confidence 56899998854
No 349
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.64 E-value=12 Score=34.44 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCCEEEEEcCcch--H-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G--~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++++|=.|++.| . ++..|++.|++|+.++.++.-++.+.+.+... .++.++.+|..+...-..+.+.... ..+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE--RFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--hcC
Confidence 3567887777543 2 23344556899999999887666665554332 3678888998775432211111111 124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.+|.|.
T Consensus 83 ~id~li~~a 91 (254)
T PRK07478 83 GLDIAFNNA 91 (254)
T ss_pred CCCEEEECC
Confidence 678888775
No 350
>PRK07035 short chain dehydrogenase; Provisional
Probab=81.50 E-value=11 Score=34.42 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.+++||=.|++.|. ++..|++.|++|++++.++.-.+.+.+.+... .++.++..|..+..--+.+...... ..+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE--RHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 35678888877542 23344556889999999877666555554322 3577788888765422211111111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 5788887653
No 351
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.45 E-value=11 Score=34.77 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhh-hhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM-LSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~-~~~~~~~~~ 214 (384)
++.++|=.| |+|.++..+++ .|++|+.++.+.+-.+.+...+... .++.++.+|..+...-... ..+.. .
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~---~ 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE---R 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---H
Confidence 467888888 45666666554 4889999999887766665554322 3678889998875422111 11111 1
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.||.|..
T Consensus 87 ~~~id~vi~~ag 98 (259)
T PRK08213 87 FGHVDILVNNAG 98 (259)
T ss_pred hCCCCEEEECCC
Confidence 245788887754
No 352
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.31 E-value=11 Score=34.57 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhh-hhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS-HMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~ 214 (384)
++++||=.|++ |.++..++ +.|++|+.++.+++-++.+.+.+.. ..++.++.+|..+..--. .+..... .
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 85 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA---E 85 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---h
Confidence 46788888854 55555444 4589999999998766555544432 236888999987643211 1111111 1
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.+|.|.-
T Consensus 86 ~~~id~vi~~ag 97 (256)
T PRK06124 86 HGRLDILVNNVG 97 (256)
T ss_pred cCCCCEEEECCC
Confidence 245788887743
No 353
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.03 E-value=12 Score=33.77 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=40.9
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~ 200 (384)
.+++||=.|++ |.++..++ +.|++|++++.++.-.+.+.+.....+++.++.+|..+..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence 35789999885 44444443 4588999999988776666444433347888899988754
No 354
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=80.83 E-value=2.8 Score=39.96 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=43.1
Q ss_pred HHhcCCCchHHHHH---hhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 329 SAFNGKRKMLRKSL---QHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 329 ~~F~~rrk~l~~~l---~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
..+..+++.|+..| +.+. +.-..+++|=.++|+|..++.+||.+|+..|+..+.+
T Consensus 149 ~~l~~~~~~Ik~~LLDQ~~iaGiGNiya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~~~~ 208 (274)
T PRK01103 149 AKLRKKKTAIKPALLDQTVVVGVGNIYADEALFRAGIHPERPAGSLSRAEAERLVDAIKA 208 (274)
T ss_pred HHHhcCCccHHHHhhcCCeEecccHhHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 34456788899988 3333 3334478899999999999999999999999987754
No 355
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.71 E-value=11 Score=34.11 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=48.9
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.++|=.|+ +|.++..+++ .|++|++++.++.-.+.....+... .++.++.+|..+..--........ ...+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 467888884 6777766554 4889999999876555444333322 368888999876532111111110 1124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.||.|..
T Consensus 84 ~id~vi~~ag 93 (239)
T PRK07666 84 SIDILINNAG 93 (239)
T ss_pred CccEEEEcCc
Confidence 5788887753
No 356
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.59 E-value=12 Score=35.56 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=49.8
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+.+||=.|++. .++..+ ++.|++|++++.+++.++.+.+.+.. ...+.++.+|+.+...-......... ..
T Consensus 39 ~~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--~~ 115 (293)
T PRK05866 39 TGKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK--RI 115 (293)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 356888888754 444444 45588999999998777666555432 23677888998775432221111111 12
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.+|.|.
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 4678888774
No 357
>PRK06194 hypothetical protein; Provisional
Probab=80.41 E-value=13 Score=34.92 Aligned_cols=82 Identities=7% Similarity=0.050 Sum_probs=48.2
Q ss_pred CCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.+||=.|++ |.++.. |++.|++|+.++.+....+.+.+.+.. ..++.++.+|+.+...-....+... ...+
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~g 82 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAAL--ERFG 82 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 5678877754 444444 445588999999987766655444432 2367889999876532111111111 0124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.||.|.-
T Consensus 83 ~id~vi~~Ag 92 (287)
T PRK06194 83 AVHLLFNNAG 92 (287)
T ss_pred CCCEEEECCC
Confidence 5788887753
No 358
>PRK05872 short chain dehydrogenase; Provisional
Probab=80.34 E-value=14 Score=35.15 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~ 215 (384)
.+++||=.|++. .++.. +++.|++|+.++.++.-++.+.+.+.....+..+.+|..+..--..+. .+.+ ..
T Consensus 8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~ 83 (296)
T PRK05872 8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVE---RF 83 (296)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHH---Hc
Confidence 467888888654 34433 444588999999998877766655543234555668877643221111 1111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|.-
T Consensus 84 g~id~vI~nAG 94 (296)
T PRK05872 84 GGIDVVVANAG 94 (296)
T ss_pred CCCCEEEECCC
Confidence 56899988753
No 359
>PLN02780 ketoreductase/ oxidoreductase
Probab=80.32 E-value=12 Score=36.39 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=40.7
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEccccc
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVK 198 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~--~~v~~~~gD~~~ 198 (384)
.|..+|=.|++.|. ++..++++|++|+.++.+++-++.+.+.+.. . .++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 36789999976653 5555666799999999999877766655432 1 256667778763
No 360
>PRK08643 acetoin reductase; Validated
Probab=80.29 E-value=11 Score=34.54 Aligned_cols=82 Identities=11% Similarity=0.157 Sum_probs=49.1
Q ss_pred CCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
++.+|=+|+. |.++..+ ++.|++|+.++.++...+.+...+.. ..++.++.+|+.+..--......... ..+
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 78 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD--TFG 78 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 3567777754 4455544 44588999999988776665555432 23678888998775432211111111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 6788887753
No 361
>PRK05854 short chain dehydrogenase; Provisional
Probab=80.08 E-value=13 Score=35.81 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.++++|=.|++.|. ++..|++.|++|+.+..+..-.+.+.+.+.. ..++.++.+|..+..--..+.+.+.. .
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~--~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA--E 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH--h
Confidence 46788888876443 2234445689999999887765555444321 23688889998876533322222211 2
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|++|.|.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 35678888774
No 362
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=79.99 E-value=12 Score=34.25 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=47.8
Q ss_pred CEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
++||=.| |+|.++..+++ +|.+|++++.++.-.+.+...... ..++.++.+|+.+..--........ ...+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAA--AEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HhcCC
Confidence 3566666 55777766664 488999999988766665554432 2368889999887541111111111 11245
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.||.|.
T Consensus 79 ~d~vi~~a 86 (255)
T TIGR01963 79 LDILVNNA 86 (255)
T ss_pred CCEEEECC
Confidence 78888764
No 363
>PTZ00357 methyltransferase; Provisional
Probab=79.90 E-value=5.2 Score=42.75 Aligned_cols=91 Identities=22% Similarity=0.302 Sum_probs=54.6
Q ss_pred EEEEEcCcchHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHh---cCC--------CCeEEEEccccccchhhhhh
Q 016715 144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERF---ASI--------DQLKVLQEDFVKCHIRSHML 206 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~----~--~~V~avE~d~~~~~~a~~~~---~~~--------~~v~~~~gD~~~~~~~~~~~ 206 (384)
.|+-+|+|-|-|-....+. + .+|++||.++..+.....+. ... +.|+++.+|+-++..+..-.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999997666543 3 38999999976544443332 222 24899999999985432000
Q ss_pred hHHhhhccCCCcceEeecc--Cc---cccHHHHH
Q 016715 207 SLFERRKSSSGFAKVVANI--PF---NISTDVIK 235 (384)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~Nl--Py---~i~~~il~ 235 (384)
.. ......+..|+||+-| .| ..+++.+.
T Consensus 783 s~-~~P~~~gKaDIVVSELLGSFGDNELSPECLD 815 (1072)
T PTZ00357 783 SL-TLPADFGLCDLIVSELLGSLGDNELSPECLE 815 (1072)
T ss_pred cc-cccccccccceehHhhhcccccccCCHHHHH
Confidence 00 0000113689998753 22 44555554
No 364
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.88 E-value=9.5 Score=37.10 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=35.2
Q ss_pred HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~ 181 (384)
......++++||=+|||. |.++..+++. |+ +|+++|.+++-.+.+++
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 333445788999999874 6666666665 76 69999999988888876
No 365
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=79.79 E-value=14 Score=34.09 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCCEEEEEcCcch--H-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhc-CCCCeEEEEccccccchhh-hhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G--~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~ 215 (384)
.++++|=.|++.| . ++..|++.|++|+.++.++... .+.+.+. ...++.++.+|+.+...-. .+..+.+ ..
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 82 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAVE---AF 82 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH---Hc
Confidence 3568888886533 2 3334455688999999886433 2333332 2236778888887643211 1111111 12
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.+|.|.
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 4678888775
No 366
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=79.64 E-value=13 Score=34.36 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+++++|=.|++. .++. .|++.|++|+.++.+++-++.+.+... .++.++.+|..+......+.+-.. ...+
T Consensus 5 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g 79 (263)
T PRK06200 5 HGQVALITGGGS-GIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTV--DAFG 79 (263)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HhcC
Confidence 467888888653 3344 344558899999999877766655442 367888899877543221111111 1224
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 80 ~id~li~~ag 89 (263)
T PRK06200 80 KLDCFVGNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 6788888754
No 367
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.57 E-value=3.2 Score=35.30 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred EEcCcch--HHHHHHH--Hc--CCcEEEEeCCHHHHHHHHHH
Q 016715 147 EIGPGTG--SLTNVLL--NA--GATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 147 EIG~G~G--~lt~~La--~~--~~~V~avE~d~~~~~~a~~~ 182 (384)
|||++.| ..+..+. .. +.+|+++|.++..++.++.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 22 56899999999999999988
No 368
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.48 E-value=14 Score=33.65 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~ 215 (384)
+++++|=.||. |.++..+ ++.|++|+++..+...............++.++.+|+.+...-.... .+.+ ..
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~---~~ 79 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAA---RW 79 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence 35678888874 4444444 44588999999887766555444432246888999987754222111 1111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.||.|..
T Consensus 80 ~~id~vi~~ag 90 (252)
T PRK06138 80 GRLDVLVNNAG 90 (252)
T ss_pred CCCCEEEECCC
Confidence 46788887654
No 369
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=79.44 E-value=9.5 Score=40.26 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=49.5
Q ss_pred hcCCCCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC----------CCCeEEEEccccccchh
Q 016715 137 AAVQEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~----------~~~v~~~~gD~~~~~~~ 202 (384)
++.+.++.||=.|++ |.++..++ +.|.+|+++..+..-+..+.+.+.. ..++.++.+|+.+.+.-
T Consensus 75 ~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 344567788877763 55665554 4588999999987766544332211 13588999999874321
Q ss_pred hhhhhHHhhhccCCCcceEeeccC
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlP 226 (384)
. .. .+..|+||.|..
T Consensus 154 ~---~a------LggiDiVVn~AG 168 (576)
T PLN03209 154 G---PA------LGNASVVICCIG 168 (576)
T ss_pred H---HH------hcCCCEEEEccc
Confidence 1 11 145788887753
No 370
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.37 E-value=9.6 Score=40.56 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=46.4
Q ss_pred CEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
++|+=+|+| ..+..++ +.+.+++.+|.|++.++.+++. +..+++||+.+.+.-.. ...+..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~--------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRA--------AGAEKA 465 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHh--------cCCccC
Confidence 456666665 4444443 3478999999999999988752 56799999998653221 123456
Q ss_pred ceEeeccCc
Q 016715 219 AKVVANIPF 227 (384)
Q Consensus 219 d~Vv~NlPy 227 (384)
+.++...+-
T Consensus 466 ~~vv~~~~d 474 (601)
T PRK03659 466 EAIVITCNE 474 (601)
T ss_pred CEEEEEeCC
Confidence 777765554
No 371
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.30 E-value=15 Score=33.46 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhh-hhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS-HMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~ 214 (384)
+++++|=+|+ +|.++..++ +.|.+|+.++.++.-.+.+.+.+.. ..++.++.+|..+..... .+..+.. .
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 79 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE---D 79 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---H
Confidence 4678898886 344444443 4588999999998766655554432 236788888876643211 1111111 1
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.||.|..
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 246788888754
No 372
>PRK07576 short chain dehydrogenase; Provisional
Probab=79.07 E-value=14 Score=34.47 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchh-hhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIR-SHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~-~~~~~~~~~~~~ 214 (384)
++.++|=.|. +|.++.. ++..|++|++++.+++-++...+.+.. ..++.++.+|+.+...- ..+..+.. .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~---~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD---E 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH---H
Confidence 4678888875 4555544 444588999999987766555444332 23667888898764321 11111111 1
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.+|.|.
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 24578888764
No 373
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.88 E-value=15 Score=34.49 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++++|=.|++ |.++..+ ++.|++|+.++.++.-++.+.+.+... .++.++.+|+.+..--..+.+... ...
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHc
Confidence 46788888876 4444444 445889999999887666555444322 357788889877542211111111 112
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|..
T Consensus 82 g~id~li~nAg 92 (275)
T PRK05876 82 GHVDVVFSNAG 92 (275)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 374
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.85 E-value=15 Score=33.81 Aligned_cols=80 Identities=8% Similarity=0.058 Sum_probs=49.1
Q ss_pred CEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~~ 217 (384)
+++|=+|++ |.++.. |++.|++|++++.++.-++.+..... ..++.++.+|+.+...-.. +..+.. ...+.
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~~~ 77 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA--ATGGR 77 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH--HcCCC
Confidence 357777765 444444 44568899999999887776655543 2478899999977542211 111111 00246
Q ss_pred cceEeeccC
Q 016715 218 FAKVVANIP 226 (384)
Q Consensus 218 ~d~Vv~NlP 226 (384)
.|.||.|.-
T Consensus 78 id~vi~~ag 86 (260)
T PRK08267 78 LDVLFNNAG 86 (260)
T ss_pred CCEEEECCC
Confidence 788887753
No 375
>PRK05650 short chain dehydrogenase; Provisional
Probab=78.68 E-value=15 Score=34.20 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=46.5
Q ss_pred EEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
+||=.|+ +|.++..+ ++.|.+|+.++.+..-.+.+...+.. ..++.++.+|+.+...-....+.... ..+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~--~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE--KWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH--HcCCC
Confidence 5676775 44444444 45588999999987766555444432 24788889998764422111111111 12467
Q ss_pred ceEeeccC
Q 016715 219 AKVVANIP 226 (384)
Q Consensus 219 d~Vv~NlP 226 (384)
|.+|.|..
T Consensus 79 d~lI~~ag 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
Confidence 88887743
No 376
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.66 E-value=15 Score=33.79 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=46.2
Q ss_pred CEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.+||=.|+ +|.++..++ +.|.+|++++.++.-.+.+.+.+.. ..++.++.+|..+..--....+-.. ...+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 45776774 455555544 4588999999987665555444432 2368888899877542211111110 01245
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.||.|.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 78888763
No 377
>PRK07062 short chain dehydrogenase; Provisional
Probab=78.55 E-value=14 Score=34.09 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.++.+|=.|++.| ++. .+++.|++|++++.+++-++.+.+.+.. . .++..+.+|+.+..--..+.+....
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-- 83 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA-- 83 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH--
Confidence 4678898887643 333 4445588999999988766655544432 1 2577788888775422211111111
Q ss_pred cCCCcceEeeccC
Q 016715 214 SSSGFAKVVANIP 226 (384)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (384)
..+..|.+|.|.-
T Consensus 84 ~~g~id~li~~Ag 96 (265)
T PRK07062 84 RFGGVDMLVNNAG 96 (265)
T ss_pred hcCCCCEEEECCC
Confidence 1246788888753
No 378
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=78.48 E-value=16 Score=34.06 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=50.0
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhh-hhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM-LSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~-~~~~~~~~~~ 215 (384)
.++.+|=.|++.|. ++..|++.|++|+.++.++...+.+.+.+... .++.++.+|..+...-... ..+.+ ..
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~~ 85 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE---DF 85 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence 45678888875432 22344455889999999887666555544332 3678889998775422211 11111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|..
T Consensus 86 g~id~li~~ag 96 (278)
T PRK08277 86 GPCDILINGAG 96 (278)
T ss_pred CCCCEEEECCC
Confidence 46788888754
No 379
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=78.30 E-value=16 Score=33.67 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
++++|=.|+ +|.++..++ ++|.+|+.++.+....+.+.+... .++.++.+|+.+..--......... ..+.
T Consensus 6 ~~~vlItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 80 (257)
T PRK07067 6 GKVALLTGA-ASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAVE--RFGG 80 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 567887874 455555555 458899999999887766655442 3678888998765432211111111 1245
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.+|.|.
T Consensus 81 id~li~~a 88 (257)
T PRK07067 81 IDILFNNA 88 (257)
T ss_pred CCEEEECC
Confidence 78888764
No 380
>PRK08251 short chain dehydrogenase; Provisional
Probab=78.28 E-value=16 Score=33.35 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=48.9
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchh-hhhhhHHhhhc
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR-SHMLSLFERRK 213 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~-~~~~~~~~~~~ 213 (384)
++++|=.|+ +|.++..+++ .|.+|+.++.++.-.+.+...+.. ..++.++.+|..+...- ..+..+..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--- 77 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD--- 77 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH---
Confidence 356787774 5666666554 488999999988776665544332 23688889998875321 11111111
Q ss_pred cCCCcceEeecc
Q 016715 214 SSSGFAKVVANI 225 (384)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (384)
..+..|.+|.|.
T Consensus 78 ~~~~id~vi~~a 89 (248)
T PRK08251 78 ELGGLDRVIVNA 89 (248)
T ss_pred HcCCCCEEEECC
Confidence 124578888774
No 381
>PRK06196 oxidoreductase; Provisional
Probab=78.25 E-value=13 Score=35.64 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.+.+||=.|++ |.++..++ +.|++|++++.++.-.+.+...+ .++.++.+|+.+..--..+.+... ...+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~--~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFL--DSGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence 45788888865 44555444 45889999999887665554443 247888899887542221111111 1124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|++|.|..
T Consensus 99 ~iD~li~nAg 108 (315)
T PRK06196 99 RIDILINNAG 108 (315)
T ss_pred CCCEEEECCC
Confidence 6788888753
No 382
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=77.81 E-value=5.6 Score=33.99 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=38.4
Q ss_pred cEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccccccchhhhhhhHHhhhccCCCcceEeeccCc
Q 016715 165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (384)
Q Consensus 165 ~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (384)
+|+|+|+.+.+++..++++... +++++++.+=.+++..- ..+..|.++-|+-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i----------~~~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI----------PEGPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC----------ccCCcCEEEEECCc
Confidence 5899999999999999998754 47999998877765321 11368999999876
No 383
>PRK09242 tropinone reductase; Provisional
Probab=77.75 E-value=17 Score=33.36 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.++++|=.|++. .++.. +++.|++|+.++.+++-.+.+...+.. ..++.++.+|+.+...-..+.+... .
T Consensus 8 ~~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 84 (257)
T PRK09242 8 DGQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--D 84 (257)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--H
Confidence 467888888753 33333 344588999999988777666655432 2367888899876532211111111 1
Q ss_pred cCCCcceEeeccCc
Q 016715 214 SSSGFAKVVANIPF 227 (384)
Q Consensus 214 ~~~~~d~Vv~NlPy 227 (384)
..+..|.||.|.-+
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12567888877543
No 384
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=77.69 E-value=18 Score=32.75 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+.+||=.|+ +|.++..+ +++|.+|++++.++.-...+...+.. ..++.++.+|..+..--..+..-.. ...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV--EDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 3567887775 45555554 45588999999986655544443332 2368889999876432111111000 112
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+.+|.||.|..
T Consensus 82 ~~~d~vi~~ag 92 (251)
T PRK12826 82 GRLDILVANAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 385
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.65 E-value=17 Score=33.63 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~ 215 (384)
.++++|=.|++ |.++.. |++.|++|+.++.++.-.+.+.+.. ..++.++.+|..+..--. .+..+.+ ..
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 78 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVA---RF 78 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHH---Hh
Confidence 35688888864 444444 4455889999999876555444433 236888899988754221 1111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|..
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 46788888753
No 386
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.51 E-value=5.1 Score=41.67 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~ 181 (384)
..++++|+=+|||. |..+...++. |++|+++|.+++-.+.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34689999999997 6666666665 8899999999999998887
No 387
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.22 E-value=18 Score=33.26 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|++ |.++..++ +.|++|+.++.++.-.+.+...+.. ..++.++.+|..+...-..+..... ...
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 84 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIE--KDI 84 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 45688888854 44544444 4588999999987766655554432 2357778888876542221111111 122
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|..
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 56899988754
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.21 E-value=19 Score=32.73 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
++.++|=.|+ +|.++..+++ +|++|++++.+++-.+.+.+.+.. ..++.++.+|+.+...-..+.+.... ..
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAA--AL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 4578887775 4566655544 588999999888766655544432 24788999998775422211111111 11
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.||.|.
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 4678888764
No 389
>PRK06720 hypothetical protein; Provisional
Probab=77.10 E-value=24 Score=30.86 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhh-HHhhhccC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS-LFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~-~~~~~~~~ 215 (384)
.+..+|-.|.|.|. +...+++.|++|+.++.+....+.+.+.+.. ...+.++..|..+...-..+.+ ..+ ..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~---~~ 91 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN---AF 91 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence 46688888876533 3344556689999999887766555444432 2356677888765432111111 111 22
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|.+|.|...
T Consensus 92 G~iDilVnnAG~ 103 (169)
T PRK06720 92 SRIDMLFQNAGL 103 (169)
T ss_pred CCCCEEEECCCc
Confidence 467899988543
No 390
>PRK06139 short chain dehydrogenase; Provisional
Probab=77.07 E-value=16 Score=35.61 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.||=.|++. .++. .+++.|++|+.++.+++-++.+.+.+... .++.++.+|..+..--..+.+.... ..
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 82 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS--FG 82 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH--hc
Confidence 456888888743 3333 34556899999999988777666555432 3677788888764322211111111 12
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.+|.|.
T Consensus 83 g~iD~lVnnA 92 (330)
T PRK06139 83 GRIDVWVNNV 92 (330)
T ss_pred CCCCEEEECC
Confidence 5689998875
No 391
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=76.91 E-value=19 Score=33.02 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhh-hhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHM-LSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~-~~~~~~~~~ 214 (384)
.+++||=+|++. .++.. |++.|++|+.++.+....+.+...+.. ..++.++.+|+.+..--..+ ..+.+ .
T Consensus 10 ~~k~vlVtG~s~-gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~ 85 (255)
T PRK06113 10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS---K 85 (255)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence 367899999654 44443 445588999999887776665544432 23677888888775422111 11111 1
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.+|.|..
T Consensus 86 ~~~~d~li~~ag 97 (255)
T PRK06113 86 LGKVDILVNNAG 97 (255)
T ss_pred cCCCCEEEECCC
Confidence 245788887643
No 392
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=76.80 E-value=15 Score=35.93 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=39.3
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~ 200 (384)
.+.+||=.|. +|.++..+++ .|.+|++++.++.-...+...+...++++++.+|..+..
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEG 71 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHH
Confidence 4568888874 6777766665 488999988776544433333322347889999987653
No 393
>PRK07102 short chain dehydrogenase; Provisional
Probab=76.72 E-value=15 Score=33.52 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=45.6
Q ss_pred CEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
++|+=.|+ +|.++..++ +.|.+|++++.++.-.+...+.... .+++.++.+|..+...-.. +... ...
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~---~~~~--~~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAA---FLDS--LPA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHH---HHHH--Hhh
Confidence 36777774 455555544 4588999999988765544333321 2478899999887532111 1111 112
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
.+|.+|.|.
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 458888664
No 394
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.68 E-value=43 Score=33.82 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHhcCC--CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEcccccc
Q 016715 126 NSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (384)
Q Consensus 126 ~~~~~~~il~~l~~~--~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~ 199 (384)
++.-++.+...+... ...+|+=+|+| .++..+++ .+.+|+.+|.|++.++.+++.. +++.++.||+.+.
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~ 287 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTDQ 287 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCCH
Confidence 345555555555422 34678888875 44444443 4789999999999988887753 3677899998764
No 395
>TIGR03629 arch_S13P archaeal ribosomal protein S13P. This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13.
Probab=76.62 E-value=2.4 Score=36.46 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=38.0
Q ss_pred CchHHHHHhhhc--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 335 rk~l~~~l~~~~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
.|.+.-+|..++ +......+++.+|+++++++.+||.+|...|.+.+++
T Consensus 16 ~k~v~~aLt~I~GIG~~~a~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 66 (144)
T TIGR03629 16 NKPVEYALTGIKGIGRRFARAIARKLGVDPNAKLGYLDDEEIEKLEEAVEN 66 (144)
T ss_pred CCEEEEeecceeccCHHHHHHHHHHcCcCCCCCcccCCHHHHHHHHHHHHh
Confidence 355555665554 3444567889999999999999999999999988753
No 396
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=76.43 E-value=21 Score=34.31 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+++||=.|+. |.++. .|++.|++|+.++.+..-.+.+.+.+.. ..++.++.+|..+...-..+.+.+. ...
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 81 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALG 81 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhC
Confidence 45678888865 44444 4445688999999887766555544432 2368888889877543221111111 112
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.+|.|.
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 4578888774
No 397
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.21 E-value=20 Score=32.75 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=49.6
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.+||=.|. +|.++..+++ +|.+|++++.++.-.+.+...... ..++.++.+|+.+...-....+.... ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE--TFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 457776665 5677766665 488999999988766655544432 24788899998765422211111111 124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.||.|.
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 578888765
No 398
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.17 E-value=18 Score=35.26 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+..||=.|++ |.++.. |++.|++|+.++.+++-++.+.+.+.. ..++.++.+|+.+...-....+... ...
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~ 83 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EEL 83 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHC
Confidence 45678888864 344443 445689999999998776666555432 2368888999877542221111111 112
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|.-
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 399
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=75.96 E-value=9.3 Score=38.66 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHh-cCCCchHHHHHhhhcChHHHHHHHHhCCC-CCCCCCCcCCHHHHHHHHHHHHh
Q 016715 320 TKSFFSMVSSAF-NGKRKMLRKSLQHLCTSLEIEKALGDVGL-PATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 320 ~~~~~~~~~~~F-~~rrk~l~~~l~~~~~~~~~~~~l~~~~l-~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
.+.+..++...+ ...++++++.|..+.+..-+..+++..++ +++++..+++.++..+|++.+++
T Consensus 274 ~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~ 339 (409)
T PF03486_consen 274 EEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKR 339 (409)
T ss_dssp HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHh
Confidence 455555555444 46788999999999888888899999999 99999999999999999998864
No 400
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.89 E-value=21 Score=32.90 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=47.5
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.+++||=.|++.|. +...|++.|++|+.++.+.. .+.+.+.... ..++.++.+|..+...-..+..-... ..+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN-WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE--EFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 46789988886542 22334456899999988733 3333333322 24688899998875432221111111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 91 ~id~li~~ag 100 (258)
T PRK06935 91 KIDILVNNAG 100 (258)
T ss_pred CCCEEEECCC
Confidence 6788887753
No 401
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.84 E-value=14 Score=36.72 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=49.3
Q ss_pred CCEEEEEcCcchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEccccccc
Q 016715 142 GDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCH 200 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~~-~-~v~~~~gD~~~~~ 200 (384)
..+|+|.-+|+|.=+...+.. +. +|+.-|++|..++.+++|+..+ + +..+++.|+-.+-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm 115 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL 115 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH
Confidence 579999999999999888876 55 8999999999999999998765 2 6677777876654
No 402
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.76 E-value=32 Score=30.68 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=63.1
Q ss_pred CCCcccCCHHHHHHHHHHhc--CCCCCEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 016715 119 LGQHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (384)
Q Consensus 119 ~gq~fl~~~~~~~~il~~l~--~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~ 193 (384)
+.| |..++.+++++++..- ...+.+|-=|.|-+=++-...... ..+|+..|.|.++-.+. -+|++
T Consensus 50 lsq-fwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg---------~eFvf 119 (217)
T KOG3350|consen 50 LSQ-FWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG---------TEFVF 119 (217)
T ss_pred hhh-hhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc---------ceeEE
Confidence 455 7777888888877552 335567777777765532222222 23899999998875554 24555
Q ss_pred ccccc-cchhhhhhhHHhhhccCCCcceEeeccCcc------ccHHHHHHhccc
Q 016715 194 EDFVK-CHIRSHMLSLFERRKSSSGFAKVVANIPFN------ISTDVIKQLLPM 240 (384)
Q Consensus 194 gD~~~-~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~------i~~~il~~L~~~ 240 (384)
-|... .++++.+ ...||+||+++||- .++..+..|..+
T Consensus 120 YDyN~p~dlp~~l---------k~~fdiivaDPPfL~~eCl~Kts~tik~L~r~ 164 (217)
T KOG3350|consen 120 YDYNCPLDLPDEL---------KAHFDIIVADPPFLSEECLAKTSETIKRLQRN 164 (217)
T ss_pred eccCCCCCCHHHH---------HhcccEEEeCCccccchhhhhhHHHHHHHhcC
Confidence 55543 2222211 25699999999993 344556666544
No 403
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=75.58 E-value=20 Score=32.94 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcchH--HHHHHHH--c--CCcEEEEeCCHHHHHHHHHHhcCC---CCeEEEEccc
Q 016715 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLLN--A--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF 196 (384)
Q Consensus 126 ~~~~~~~il~~l~~~~~~~VLEIG~G~G~--lt~~La~--~--~~~V~avE~d~~~~~~a~~~~~~~---~~v~~~~gD~ 196 (384)
.|.+.+.|-..+.-...+.++|+.|+.|. .|..|+- + |.++++|-.++.-....++.+... +-++|+.||.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 45667777776666667899999766442 3444432 2 789999999988777666666532 2468888885
Q ss_pred cc
Q 016715 197 VK 198 (384)
Q Consensus 197 ~~ 198 (384)
.+
T Consensus 106 ~e 107 (218)
T PF07279_consen 106 PE 107 (218)
T ss_pred HH
Confidence 43
No 404
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.50 E-value=18 Score=33.12 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~ 214 (384)
.+++||=.|++ |.++.. |+++|++|+.++.++.-.+.+...+.. ..++.++..|..+...-.... ...+ .
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 79 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE---R 79 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH---H
Confidence 45678877764 445544 444588999999988766665555432 236788999987643221111 1111 1
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.||.|.
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 24678888774
No 405
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.37 E-value=20 Score=33.24 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=46.6
Q ss_pred CCCEEEEEcCcc----hH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~----G~-lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|++. |. ++..+++.|++|+.++.++...+.+++.....+...++.+|+.+..--+.+.+... ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence 467888889854 33 34566677999998887754333333322221233456778877543222221111 122
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|..
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 56899888754
No 406
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.27 E-value=17 Score=33.61 Aligned_cols=83 Identities=13% Similarity=0.225 Sum_probs=48.3
Q ss_pred CCCEEEEEcCcc-hHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGT-GSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~-G~lt----~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|.++ +.++ ..|++.|++|+.++.+....+.+++.. ..++.++.+|+.+..--+.+.+.... ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV--DEEDLLVECDVASDESIERAFATIKE--RV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHHH--Hh
Confidence 467888888753 3333 344456899999988755444433322 13577888898765422222222211 12
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|++|.|.-+
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 568999988543
No 407
>PRK06182 short chain dehydrogenase; Validated
Probab=74.96 E-value=18 Score=33.76 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=46.7
Q ss_pred CCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
+++||=.|++ |.++..++ +.|++|++++.++.-++.+.. .++.++.+|..+...-....+.... ..+.
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~--~~~~ 74 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTIIA--EEGR 74 (273)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHH--hcCC
Confidence 4678888864 44555554 448899999998765543321 2578888998775422211111110 1246
Q ss_pred cceEeeccCc
Q 016715 218 FAKVVANIPF 227 (384)
Q Consensus 218 ~d~Vv~NlPy 227 (384)
.|.+|.|..+
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 7999988643
No 408
>PRK08628 short chain dehydrogenase; Provisional
Probab=74.87 E-value=23 Score=32.50 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~ 215 (384)
++..+|=+|++ |.++..+ +++|++|+.+..++...+...+......++.++.+|+.+...-. .+..+.. ..
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 81 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA---KF 81 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---hc
Confidence 45678888864 4455444 45588999998887655333332222347888999987654221 1111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.||.|..
T Consensus 82 ~~id~vi~~ag 92 (258)
T PRK08628 82 GRIDGLVNNAG 92 (258)
T ss_pred CCCCEEEECCc
Confidence 46788887754
No 409
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=74.76 E-value=9.4 Score=39.93 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHhhhc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 320 TKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 320 ~~~~~~~~~~~F~~rrk~l~~~l~~~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
...+..+++ ..++++|..-|..-| +.....++++.+|++++++|.+|+.+|..+|.+.|.+
T Consensus 243 ~~~l~~m~~---~t~~~~l~~fL~~~f~~v~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 306 (535)
T PRK04184 243 LGTLKRMAA---RTKRRTLKEFLVEEFSRVGDKTADEILEKAGLDPNKKPKELTREELERLVEAFKK 306 (535)
T ss_pred HHHHHHHHH---hcccCCHHHHHHHhhcccCHHHHHHHHHHcCCCCCCChhhCCHHHHHHHHHHHHh
Confidence 444444443 456678877777655 4566788999999999999999999999999998865
No 410
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.65 E-value=16 Score=34.08 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCEEEEEcC-cchHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGP-GTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~-G~G~lt----~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++++|=.|+ |++.++ ..+++.|++|+.++......+.+++.....+....+.+|+.+..--..+.+.... ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQ--HW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHH--Hh
Confidence 4678999996 344444 4445568999887654332233322222112334567788765432222221111 22
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|.-
T Consensus 83 g~iD~lvnnAG 93 (260)
T PRK06997 83 DGLDGLVHSIG 93 (260)
T ss_pred CCCcEEEEccc
Confidence 57899998853
No 411
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.61 E-value=15 Score=33.98 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCEEEEEcCc-chHHHHHH----HHcCCcEEEEeCCH--HHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPG-TGSLTNVL----LNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G-~G~lt~~L----a~~~~~V~avE~d~--~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.++.+|=.|+| ++.++..+ ++.|++|+.++.+. +..+.+.+.+. .++.++..|+.+..--..+.+....
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~-- 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVRE-- 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHHH--
Confidence 46789999984 44454444 44588999988663 44444443332 2566788888775422222211111
Q ss_pred cCCCcceEeeccC
Q 016715 214 SSSGFAKVVANIP 226 (384)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (384)
..+..|.+|.|.-
T Consensus 82 ~~g~iD~li~nAG 94 (256)
T PRK07889 82 HVDGLDGVVHSIG 94 (256)
T ss_pred HcCCCcEEEEccc
Confidence 2256899988753
No 412
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.56 E-value=19 Score=33.89 Aligned_cols=84 Identities=17% Similarity=0.093 Sum_probs=46.2
Q ss_pred CCCEEEEEcCc-chHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPG-TGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G-~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|++ ++.++. .|++.|++|+.+..++...+.+++.....+....+.+|..+..--..+.+.... ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK--KW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH--hc
Confidence 45788888975 234443 444568999888665433333333322223455678888765432222222211 22
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|.-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 56899998853
No 413
>PRK07791 short chain dehydrogenase; Provisional
Probab=73.96 E-value=24 Score=33.39 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=47.6
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCH---------HHHHHHHHHhcC-CCCeEEEEccccccchhhhhhh
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS 207 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~---------~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~ 207 (384)
.++++|=.|++.|. ++..+++.|++|+.++.+. +-++.+.+.+.. ..++.++.+|+.+..--..+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 46788988876543 2234455688999988764 333333333322 2367788888877543221111
Q ss_pred HHhhhccCCCcceEeeccC
Q 016715 208 LFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlP 226 (384)
... ...+..|.+|.|.-
T Consensus 85 ~~~--~~~g~id~lv~nAG 101 (286)
T PRK07791 85 AAV--ETFGGLDVLVNNAG 101 (286)
T ss_pred HHH--HhcCCCCEEEECCC
Confidence 111 12256789988753
No 414
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.84 E-value=22 Score=32.70 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.++++|=.|++ |.++..+ ++.|++|++++.+++-.+.+.+.+.. ..++.++.+|..+..-- ..+++ .
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~---~~~~~---~ 78 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAR---EQLAA---E 78 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHH---HHHHH---H
Confidence 35788888864 4455444 45588999999998776665554432 23678888888764321 11222 1
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.+|.|.
T Consensus 79 ~g~id~lv~~a 89 (259)
T PRK06125 79 AGDIDILVNNA 89 (259)
T ss_pred hCCCCEEEECC
Confidence 25678888774
No 415
>PRK08303 short chain dehydrogenase; Provisional
Probab=73.84 E-value=18 Score=34.73 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCH----------HHHHHHHHHhcCC-CCeEEEEccccccchhhhh
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQ----------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~----------~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~ 205 (384)
.++.+|-.|++.| ++.. |++.|++|+.++.+. +-++.+.+.+... .++.++.+|+.+..--..+
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 4678999997654 4443 344588999998762 2233333333322 3577888998775432222
Q ss_pred hhHHhhhccCCCcceEeecc
Q 016715 206 LSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~Nl 225 (384)
.+.... ..+..|++|.|.
T Consensus 86 ~~~~~~--~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDR--EQGRLDILVNDI 103 (305)
T ss_pred HHHHHH--HcCCccEEEECC
Confidence 221111 125678888886
No 416
>PRK07831 short chain dehydrogenase; Provisional
Probab=73.82 E-value=27 Score=32.26 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=49.6
Q ss_pred CCCEEEEEcC-c--chHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGP-G--TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~-G--~G~l-t~~La~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.++++|=.|+ | .|.. +..+++.|++|+.++.++.-++...+.+.. ..++.++.+|..+...-+...+....
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE-- 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH--
Confidence 4678888885 3 3433 344555689999999888766655554432 13678888998764322111111100
Q ss_pred cCCCcceEeeccC
Q 016715 214 SSSGFAKVVANIP 226 (384)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (384)
..+..|.+|.|.-
T Consensus 94 ~~g~id~li~~ag 106 (262)
T PRK07831 94 RLGRLDVLVNNAG 106 (262)
T ss_pred HcCCCCEEEECCC
Confidence 1246788887754
No 417
>PRK05993 short chain dehydrogenase; Provisional
Probab=73.82 E-value=20 Score=33.54 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~ 216 (384)
+++||=.|++ |.++..+ ++.|.+|++++.+++-++.+.. .++.++.+|..+...-.. +..+.+ ...+
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~--~~~g 75 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLE--LSGG 75 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 4678888874 4444444 4558899999999876655443 257788888876432111 111111 1124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.+|.|.
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 678888874
No 418
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.45 E-value=24 Score=32.94 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=48.1
Q ss_pred CCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
+.++|=.|++ |.++..+ +++|++|++++.+++-.+...+.... ..++.++.+|+.+...-..+..+.. .
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~ 78 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK---E 78 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH---h
Confidence 4578888854 4445444 44588999999887766555443322 2378899999987542221222211 1
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.||.|.
T Consensus 79 ~~~id~vv~~a 89 (280)
T PRK06914 79 IGRIDLLVNNA 89 (280)
T ss_pred cCCeeEEEECC
Confidence 24568888764
No 419
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=73.43 E-value=19 Score=37.59 Aligned_cols=41 Identities=29% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715 141 EGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 141 ~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~ 181 (384)
++.+|+=+|+|. |..+..+++. |+.|+++|.++.-.+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 568999999996 5666656654 8899999999998877775
No 420
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.38 E-value=26 Score=37.49 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=40.4
Q ss_pred CEEEEEcCcc-hHHHHH-HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccch
Q 016715 143 DIVLEIGPGT-GSLTNV-LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (384)
Q Consensus 143 ~~VLEIG~G~-G~lt~~-La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~ 201 (384)
++|+=+|||. |..... |.+.+.+++.+|.|++.++.+++. +..+++||+.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~ 456 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDL 456 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHH
Confidence 5788888875 544333 344478999999999999988752 56899999998653
No 421
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.33 E-value=27 Score=32.29 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=52.7
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
.++++|=.|++.|. ++..|++.|++|+.++.+++-++.+...+... .++.++.+|..+..--..+.+... ...+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 45788888877532 34455666899999999887666655555432 368888999876543222221111 1124
Q ss_pred CcceEeeccCc
Q 016715 217 GFAKVVANIPF 227 (384)
Q Consensus 217 ~~d~Vv~NlPy 227 (384)
..|.+|.|..+
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 67889887543
No 422
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=73.26 E-value=23 Score=32.72 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=47.5
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~ 215 (384)
+++.+|=.|++. .++. .|++.|++|+.++.+...++.+.+.. ..++..+.+|..+..-... +..+.+ ..
T Consensus 4 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 77 (262)
T TIGR03325 4 KGEVVLVTGGAS-GLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCVA---AF 77 (262)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHHH---Hh
Confidence 356888888753 3444 44455899999999887666554432 2367788888876432211 111111 12
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.+|.|.
T Consensus 78 g~id~li~~A 87 (262)
T TIGR03325 78 GKIDCLIPNA 87 (262)
T ss_pred CCCCEEEECC
Confidence 4678888774
No 423
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=72.92 E-value=16 Score=35.04 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=37.6
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhc--C-CCCeEEEEccccccc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFA--S-IDQLKVLQEDFVKCH 200 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~--~-~~~v~~~~gD~~~~~ 200 (384)
.+++||=.| |+|.++..+++ .|.+|+++..++........... . .++++++.+|+.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 467888888 56777766665 47899888766543332222211 1 136889999988754
No 424
>PRK08324 short chain dehydrogenase; Validated
Probab=72.39 E-value=23 Score=38.32 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~ 215 (384)
.++.||=.|++ |.++. .+++.|++|++++.++.-.+.+...+....++.++.+|..+...-.. +..... ..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~---~~ 496 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAAL---AF 496 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHH---Hc
Confidence 46789988864 33333 34445889999999988776666554332478888888876432111 111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.||.|.-
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 46899988754
No 425
>PRK06197 short chain dehydrogenase; Provisional
Probab=72.28 E-value=23 Score=33.77 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.+++||=.|+. |.++..+ ++.|++|+.+..++.-.+.+.+.+.. ..++.++.+|+.+...-..+.+-.. .
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~ 91 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR--A 91 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--h
Confidence 46788877753 4444444 44588999999887665544443321 2367888999887653222111111 1
Q ss_pred cCCCcceEeecc
Q 016715 214 SSSGFAKVVANI 225 (384)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (384)
..+..|.+|.|.
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 124678888774
No 426
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.28 E-value=6.1 Score=41.57 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=37.3
Q ss_pred CEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~ 200 (384)
++|+=+||| ..+..+++ .+.+|+.+|.|++.++.+++. +..+++||+.+..
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~ 472 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEE 472 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHH
Confidence 456666665 44444443 478999999999998888752 6789999998754
No 427
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=72.05 E-value=5.8 Score=38.16 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=58.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcC------CCCeEEEEccccccchhhhhhhHHhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avE~d~~~~~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
..++||-||-|-|...+..+.+. .++.-+|+|...++..++.+.. .+++.++-||...+-..
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~---------- 190 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED---------- 190 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH----------
Confidence 56799999999999998888873 3899999999999988876531 35899999998775422
Q ss_pred ccCCCcceEeecc
Q 016715 213 KSSSGFAKVVANI 225 (384)
Q Consensus 213 ~~~~~~d~Vv~Nl 225 (384)
...++||+|+...
T Consensus 191 ~~~~~~dVii~ds 203 (337)
T KOG1562|consen 191 LKENPFDVIITDS 203 (337)
T ss_pred hccCCceEEEEec
Confidence 1247899998653
No 428
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=72.00 E-value=9.7 Score=36.27 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=43.0
Q ss_pred HHHhcCCCchHHHHHhhh---c--ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 328 SSAFNGKRKMLRKSLQHL---C--TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 328 ~~~F~~rrk~l~~~l~~~---~--~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
...+..++..|+..|..- . +.-..+++|-.+||+|..++.+||.+|+.+|+..+.+
T Consensus 147 ~~~~~~~~~~ik~~Lldq~viaGiGNiya~EiLf~a~i~P~~~~~~l~~~~~~~l~~a~~~ 207 (272)
T PRK14810 147 AALFRGRKTRIKSALLNQTLLRGVGNIYADEALFRAGIRPQRLASSLSRERLRKLHDAIGE 207 (272)
T ss_pred HHHHhcCCccHHHHhhcCceeccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 344556777888887532 2 3444578899999999999999999999999986643
No 429
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.96 E-value=23 Score=32.58 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=45.9
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++++|-.|++. .++..+ ++.|++|+.++.+.. +.+.+.... ..++.++.+|..+..--..+.+... ...
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 81 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAV--EVM 81 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHH--HHc
Confidence 467899888754 444444 445889998876542 222222221 2468888899877543222111111 122
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|.-
T Consensus 82 g~iD~lv~~ag 92 (251)
T PRK12481 82 GHIDILINNAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 56888888753
No 430
>PRK07825 short chain dehydrogenase; Provisional
Probab=71.90 E-value=29 Score=32.26 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=47.5
Q ss_pred CCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
+.++|=.|++. .++.. |++.|++|+.++.+++-++.+...+ +++.++.+|+.+..--....+-... ..+.
T Consensus 5 ~~~ilVtGasg-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 78 (273)
T PRK07825 5 GKVVAITGGAR-GIGLATARALAALGARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEA--DLGP 78 (273)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 56888888754 34444 4455889999999987766554443 2577888898765422111111111 1245
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.+|.|.
T Consensus 79 id~li~~a 86 (273)
T PRK07825 79 IDVLVNNA 86 (273)
T ss_pred CCEEEECC
Confidence 78888774
No 431
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=71.71 E-value=34 Score=31.01 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.++|=.|++ |.++..++ +.|.+|+.++.+......+...+.. ..++.++.+|..+...-........ ...+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE--QALG 79 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 5678888854 55555444 4588999999988776666554432 2478889999876542221111111 0124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 5788887764
No 432
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.57 E-value=24 Score=33.20 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=46.4
Q ss_pred CCCEEEEEcCc----chHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPG----TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G----~G~l-t~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|++ .|.. +..+++.|++|+.++.+.+..+.+.+.....+.-..+.+|+.+..--..+.+.... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~--~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKK--DL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHH--Hc
Confidence 36788999974 3432 33445568999999888543333332222112115677888775432222222211 23
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|++|.|.-
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 56899998854
No 433
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=71.57 E-value=26 Score=32.14 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEccccccchhhhhh-hHHhhhc
Q 016715 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHML-SLFERRK 213 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~-~~~~~~~ 213 (384)
+++||=.|++ |.++..+ ++.|++|+.++.+..-.+.+...+.. . .++.++.+|..+...-.... .+..
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--- 77 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE--- 77 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH---
Confidence 3568888854 5555444 45688999999987655544443321 1 36888899987643221111 1111
Q ss_pred cCCCcceEeecc
Q 016715 214 SSSGFAKVVANI 225 (384)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (384)
..+..|.||.|.
T Consensus 78 ~~~~id~vv~~a 89 (259)
T PRK12384 78 IFGRVDLLVYNA 89 (259)
T ss_pred HcCCCCEEEECC
Confidence 124578888764
No 434
>PRK06057 short chain dehydrogenase; Provisional
Probab=71.46 E-value=24 Score=32.44 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
++++||=+|++ |.++..++ ++|++|++++.++.-.+...+.+. ..++.+|..+...-..+.+.... ..+
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~~--~~~ 78 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAAE--TYG 78 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHHH--HcC
Confidence 46789999985 44454444 458899999998776555544432 24677787764322211111110 124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.||.|.
T Consensus 79 ~id~vi~~a 87 (255)
T PRK06057 79 SVDIAFNNA 87 (255)
T ss_pred CCCEEEECC
Confidence 578887764
No 435
>PRK05875 short chain dehydrogenase; Provisional
Probab=71.01 E-value=31 Score=32.03 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhh-hhhhHHhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRS-HMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~-~~~~~~~~~ 212 (384)
+++++|=.|++ |.++..++ +.|++|++++.++.-.+...+.+.. ..++.++.+|+.+...-. .+....+
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 82 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA-- 82 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH--
Confidence 35789988864 44555554 4588999999887665544444322 136788889987643211 1111111
Q ss_pred ccCCCcceEeecc
Q 016715 213 KSSSGFAKVVANI 225 (384)
Q Consensus 213 ~~~~~~d~Vv~Nl 225 (384)
..+..|.+|.|.
T Consensus 83 -~~~~~d~li~~a 94 (276)
T PRK05875 83 -WHGRLHGVVHCA 94 (276)
T ss_pred -HcCCCCEEEECC
Confidence 124578888764
No 436
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.63 E-value=12 Score=35.50 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=46.5
Q ss_pred EEEEEcCcc--hHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcceE
Q 016715 144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (384)
Q Consensus 144 ~VLEIG~G~--G~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (384)
+|.=||+|. |.++..|.+.|.+|+++|.++..++.+.+. +.+.....+. .. ....|+|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~~~~~~~~~-----~~-----------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GLVDEASTDL-----SL-----------LKDCDLV 61 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CCcccccCCH-----hH-----------hcCCCEE
Confidence 466688885 566777777788999999999887777643 1111111111 00 1356888
Q ss_pred eeccCccccHHHHHHhc
Q 016715 222 VANIPFNISTDVIKQLL 238 (384)
Q Consensus 222 v~NlPy~i~~~il~~L~ 238 (384)
|...|.....+++..+.
T Consensus 62 ilavp~~~~~~~~~~l~ 78 (279)
T PRK07417 62 ILALPIGLLLPPSEQLI 78 (279)
T ss_pred EEcCCHHHHHHHHHHHH
Confidence 88887655555555554
No 437
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=70.56 E-value=16 Score=35.73 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=37.2
Q ss_pred HhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHh
Q 016715 136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~ 183 (384)
...+.++++||=.|+ |.|.++..+++. |++|++++.+++-.+.+++.+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l 203 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL 203 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence 345678999999998 367787777776 889999999988777776444
No 438
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=70.16 E-value=20 Score=35.69 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCCEEEEEcCc-chHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHh
Q 016715 141 EGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 141 ~~~~VLEIG~G-~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~ 183 (384)
++.+|+=||+| .|..++..+.. |++|+.+|.++.-.+.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 34579999998 36666655554 889999999987776665544
No 439
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.97 E-value=32 Score=31.02 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCEEEEEcCcchHHHHHHH----HcCCcEEEE-eCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~av-E~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
++++|=+|+ +|.++..++ +.|++|+.+ +.++.-.+.+...+.. ..++.++.+|+.+..--..+.+.... ..
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 81 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE--KF 81 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--Hh
Confidence 457777775 566666554 458899988 8887666555444432 23688899998875422111111110 12
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|.||.|..+
T Consensus 82 ~~id~vi~~ag~ 93 (247)
T PRK05565 82 GKIDILVNNAGI 93 (247)
T ss_pred CCCCEEEECCCc
Confidence 367888877543
No 440
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=69.97 E-value=15 Score=36.71 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=54.8
Q ss_pred CCEEEEEcCcchHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhcCCC----CeEEEEccccccchhhhhhhHHhhhcc
Q 016715 142 GDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~-~~V~avE~d~~~~~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
+-+|||.=+|+|.=+...+.. + .+|++-|+|+++++.++++++.++ .+++.+.|+..+-.. .
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~-----------~ 118 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS-----------R 118 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH-----------S
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh-----------c
Confidence 358999999999999888776 2 489999999999999999976432 488999998875421 2
Q ss_pred CCCcceEeeccCccccHHHHH
Q 016715 215 SSGFAKVVANIPFNISTDVIK 235 (384)
Q Consensus 215 ~~~~d~Vv~NlPy~i~~~il~ 235 (384)
...||+|=-+ ||.-+.+.+.
T Consensus 119 ~~~fD~IDlD-PfGSp~pfld 138 (377)
T PF02005_consen 119 QERFDVIDLD-PFGSPAPFLD 138 (377)
T ss_dssp TT-EEEEEE---SS--HHHHH
T ss_pred cccCCEEEeC-CCCCccHhHH
Confidence 3567766443 5555555544
No 441
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=69.96 E-value=29 Score=30.83 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCEEEEEcC-c-chHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 141 EGDIVLEIGP-G-TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 141 ~~~~VLEIG~-G-~G~l-t~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
++.+++=+|+ | .|.. ...+++.+++|+.+..+.+-.+.+.+.+....+..+...|..+.... ... ...
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~------~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAAR---AAA------IKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHH---HHH------Hhc
Confidence 5678999985 3 3533 34445568899999988766665555443212334444444432110 011 135
Q ss_pred cceEeeccCcc
Q 016715 218 FAKVVANIPFN 228 (384)
Q Consensus 218 ~d~Vv~NlPy~ 228 (384)
.|+||+..|..
T Consensus 98 ~diVi~at~~g 108 (194)
T cd01078 98 ADVVFAAGAAG 108 (194)
T ss_pred CCEEEECCCCC
Confidence 68888766543
No 442
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=69.95 E-value=16 Score=36.96 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=43.0
Q ss_pred cCCCcccCCHHHHHHHHHHhcC-CCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHH
Q 016715 118 SLGQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLV 179 (384)
Q Consensus 118 ~~gq~fl~~~~~~~~il~~l~~-~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a 179 (384)
.|...|-+.....+.++..-+. ..|++|+=+|+|. |...+..++. |++|+++|.|+.-...+
T Consensus 170 ~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 170 LFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA 234 (406)
T ss_pred hhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence 3444566666777777776543 4789999999996 5555555544 88999999998644333
No 443
>PRK09186 flagellin modification protein A; Provisional
Probab=69.78 E-value=32 Score=31.42 Aligned_cols=82 Identities=21% Similarity=0.309 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC---CCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.+++||=.|++ |.++..++ +.|++|+++..+++-++.+...+.. ...+.++.+|+.+..--..+.+....
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~-- 79 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE-- 79 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH--
Confidence 35788888875 44554444 4588999999888776666555421 23566778898874322111111111
Q ss_pred cCCCcceEeecc
Q 016715 214 SSSGFAKVVANI 225 (384)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (384)
..+..|.||.|.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 124578888774
No 444
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=69.75 E-value=20 Score=35.64 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=51.6
Q ss_pred EEEEcCcchHHHHHHHH---c-C-C-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 145 VLEIGPGTGSLTNVLLN---A-G-A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 145 VLEIG~G~G~lt~~La~---~-~-~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
|+=+|+| ..+..+++ . . . +|+..|.+.+-++.+.+.+ ...+++.+..|+.+...-. .++ ...
T Consensus 1 IlvlG~G--~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~---~~~------~~~ 68 (386)
T PF03435_consen 1 ILVLGAG--RVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLA---ELL------RGC 68 (386)
T ss_dssp EEEE--S--HHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHH---HHH------TTS
T ss_pred CEEEcCc--HHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHH---HHH------hcC
Confidence 5668884 44444433 2 3 2 7999999988877766543 2358999999988754211 122 345
Q ss_pred ceEeeccCccccHHHHHHhcccCCCe
Q 016715 219 AKVVANIPFNISTDVIKQLLPMGDIF 244 (384)
Q Consensus 219 d~Vv~NlPy~i~~~il~~L~~~g~~~ 244 (384)
|+||...|.....++++...+.|.-+
T Consensus 69 dvVin~~gp~~~~~v~~~~i~~g~~y 94 (386)
T PF03435_consen 69 DVVINCAGPFFGEPVARACIEAGVHY 94 (386)
T ss_dssp SEEEE-SSGGGHHHHHHHHHHHT-EE
T ss_pred CEEEECCccchhHHHHHHHHHhCCCe
Confidence 89998876657777877776655443
No 445
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=69.53 E-value=36 Score=31.38 Aligned_cols=83 Identities=8% Similarity=0.116 Sum_probs=47.2
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEe-CCHHHHHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE-~d~~~~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
++++||=.|++.|. ++..|++.|++|+.+. .+++.++.+.+.+.. ..++.++.+|+.+..--..+.+.... .
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE--D 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--h
Confidence 46788888866542 3344555688988774 455544443333321 23678899998775422222221111 2
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.+|.|.
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 24678888875
No 446
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=69.22 E-value=40 Score=30.62 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+++||=.|++.| ++.. +++.|++|++++.++. ..+.+.... .+++.++.+|+.+..--..+.+.... ..
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 78 (248)
T TIGR01832 4 EGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE--EF 78 (248)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 4678998888643 4444 4445889999987652 222222222 24688889998875432211111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|.-
T Consensus 79 ~~~d~li~~ag 89 (248)
T TIGR01832 79 GHIDILVNNAG 89 (248)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 447
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=69.13 E-value=18 Score=34.06 Aligned_cols=48 Identities=29% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCc-EEEEeCCHHHHHHHHHH
Q 016715 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GAT-VLAIEKDQHMVGLVRER 182 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~-V~avE~d~~~~~~a~~~ 182 (384)
......++++||=+|+|. |.++..+++. |++ |+++|.++.-.+.+++.
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 334445788999998864 6666666665 775 99999998877777653
No 448
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.05 E-value=15 Score=35.80 Aligned_cols=58 Identities=22% Similarity=0.129 Sum_probs=36.0
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccc
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~ 200 (384)
+++||=.| |+|.++..+++ .|.+|++++.++..............++.++.+|..+..
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHH
Confidence 56788877 45666665554 488999999776543322222211236778888887643
No 449
>PRK06179 short chain dehydrogenase; Provisional
Probab=68.91 E-value=22 Score=32.97 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=45.6
Q ss_pred CCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~~ 216 (384)
+..||=.|+ +|.++..++ ++|++|++++.++.-.. ...+++++.+|..+..--. .+..+.+ ..+
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~---~~g 72 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIA---RAG 72 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHH---hCC
Confidence 457888885 466666655 45889999998864322 1236788899987653221 1111111 124
Q ss_pred CcceEeeccCc
Q 016715 217 GFAKVVANIPF 227 (384)
Q Consensus 217 ~~d~Vv~NlPy 227 (384)
..|.+|.|.-+
T Consensus 73 ~~d~li~~ag~ 83 (270)
T PRK06179 73 RIDVLVNNAGV 83 (270)
T ss_pred CCCEEEECCCC
Confidence 67899887543
No 450
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=68.69 E-value=37 Score=30.95 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=46.7
Q ss_pred EEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhh-hhhhHHhhhccCCC
Q 016715 144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (384)
++|=.|+ +|.++..++ +.|++|+.++.++.-.+.+.+.+.. ..++.++.+|..+...-. .+..+.+ ..+.
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~~~ 77 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAE---KFGG 77 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---HcCC
Confidence 4666775 455555544 4588999999887665555444332 236888889987644211 1111111 1245
Q ss_pred cceEeeccCc
Q 016715 218 FAKVVANIPF 227 (384)
Q Consensus 218 ~d~Vv~NlPy 227 (384)
.|.+|.|...
T Consensus 78 id~vi~~ag~ 87 (254)
T TIGR02415 78 FDVMVNNAGV 87 (254)
T ss_pred CCEEEECCCc
Confidence 7888877543
No 451
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.29 E-value=32 Score=31.89 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcc-hHHHHHH----HHcCCcEEEEeCC---HHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhh
Q 016715 141 EGDIVLEIGPGT-GSLTNVL----LNAGATVLAIEKD---QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~-G~lt~~L----a~~~~~V~avE~d---~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
.++.+|=.|+++ +.++..+ ++.|++|+.++.+ ...++.+.+... ..++.++..|+.+..--+.+.+....
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~- 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKE- 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHH-
Confidence 467899999752 4444444 4458899988654 233343333332 24677888898775432222221111
Q ss_pred ccCCCcceEeeccC
Q 016715 213 KSSSGFAKVVANIP 226 (384)
Q Consensus 213 ~~~~~~d~Vv~NlP 226 (384)
..+..|.+|.|.-
T Consensus 84 -~~g~ld~lv~nag 96 (257)
T PRK08594 84 -EVGVIHGVAHCIA 96 (257)
T ss_pred -hCCCccEEEECcc
Confidence 2256888887754
No 452
>PRK07904 short chain dehydrogenase; Provisional
Probab=68.20 E-value=33 Score=31.69 Aligned_cols=83 Identities=7% Similarity=0.103 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcC-CcEEEEeCCHHH-HHHHHHHhcC--CCCeEEEEccccccchhhhhhhHHhhh
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAG-ATVLAIEKDQHM-VGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~-~~V~avE~d~~~-~~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~~~~~~~ 212 (384)
.+.+||=.|++ |.++..++ +.| .+|+.++.++.- ++.+.+.+.. ..+++++.+|..+..--....+...
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~-- 83 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF-- 83 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH--
Confidence 46789999985 44554444 444 799999987653 4444333322 1268899999876442111111111
Q ss_pred ccCCCcceEeeccCc
Q 016715 213 KSSSGFAKVVANIPF 227 (384)
Q Consensus 213 ~~~~~~d~Vv~NlPy 227 (384)
..+..|.+|.|...
T Consensus 84 -~~g~id~li~~ag~ 97 (253)
T PRK07904 84 -AGGDVDVAIVAFGL 97 (253)
T ss_pred -hcCCCCEEEEeeec
Confidence 11468888877543
No 453
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=67.81 E-value=2.9 Score=33.77 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.1
Q ss_pred CcceEeeccCccccH
Q 016715 217 GFAKVVANIPFNIST 231 (384)
Q Consensus 217 ~~d~Vv~NlPy~i~~ 231 (384)
.||+||+||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 489999999995543
No 454
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=67.69 E-value=43 Score=32.14 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCEEEEEcCcchH---HHHHHHHcC-CcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~-~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.++|=.|++.|. ++..|++.| .+|+.+..++.-.+.+.+.+.. ..++.++.+|..+..--..+.+.... ..+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRE--SGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHH--hCC
Confidence 4577777765433 233445568 8999998887766555544432 23577788888775432212111111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.+|.|..
T Consensus 81 ~iD~lI~nAG 90 (314)
T TIGR01289 81 PLDALVCNAA 90 (314)
T ss_pred CCCEEEECCC
Confidence 6788988853
No 455
>PRK07806 short chain dehydrogenase; Provisional
Probab=67.65 E-value=33 Score=31.17 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=45.3
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCH-HHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQ-HMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~-~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.++++|-.|++ |.++..++ +.|.+|+++..+. ...+.+...+.. ..++.++.+|+.+...-..+.+... ..
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR--EE 81 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence 35688888863 44444444 4588999887653 233333333322 2367888999877542221111111 01
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.||.|..
T Consensus 82 ~~~~d~vi~~ag 93 (248)
T PRK07806 82 FGGLDALVLNAS 93 (248)
T ss_pred CCCCcEEEECCC
Confidence 245788887754
No 456
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=67.50 E-value=14 Score=37.08 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=46.1
Q ss_pred cCCCchHHHHHhhhcChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 332 ~~rrk~l~~~l~~~~~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
.+++|.++|.|..+.+..-++-+++..+| ++....++|+.+...|++.++.
T Consensus 282 ~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~ 332 (408)
T COG2081 282 ANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKA 332 (408)
T ss_pred hChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhc
Confidence 45788999999999898888999999999 8899999999999999998864
No 457
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=67.37 E-value=23 Score=40.19 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCEEEEEcCcc-hHHHHHHH-Hc-CCc-------------EEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhh
Q 016715 142 GDIVLEIGPGT-GSLTNVLL-NA-GAT-------------VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (384)
Q Consensus 142 ~~~VLEIG~G~-G~lt~~La-~~-~~~-------------V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~ 205 (384)
.++|+=||||- |...+..+ +. +.+ |+..|.+..-.+.+.+.+ ++++.+..|+.+...-
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---~~~~~v~lDv~D~e~L--- 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---ENAEAVQLDVSDSESL--- 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---CCCceEEeecCCHHHH---
Confidence 45899999983 55444333 33 223 778999987666555543 3566666666554211
Q ss_pred hhHHhhhccCCCcceEeeccCccccHHHHHHhcccCC
Q 016715 206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGD 242 (384)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~ 242 (384)
..+ ....|+||+-+|+....++....++.|.
T Consensus 643 ~~~------v~~~DaVIsalP~~~H~~VAkaAieaGk 673 (1042)
T PLN02819 643 LKY------VSQVDVVISLLPASCHAVVAKACIELKK 673 (1042)
T ss_pred HHh------hcCCCEEEECCCchhhHHHHHHHHHcCC
Confidence 111 1358999999999888888776666554
No 458
>PRK06180 short chain dehydrogenase; Provisional
Probab=67.34 E-value=38 Score=31.63 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=46.7
Q ss_pred CCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~~ 216 (384)
++.||=.|++. .++.. |++.|++|++++.++.-++.+.... .+++.++.+|..+..--.. +..... ..+
T Consensus 4 ~~~vlVtGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~---~~~ 77 (277)
T PRK06180 4 MKTWLITGVSS-GFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAEA---TFG 77 (277)
T ss_pred CCEEEEecCCC-hHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHHH---HhC
Confidence 46788888754 44444 4445889999999987665544332 2367888888877542111 111111 124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.||.|.
T Consensus 78 ~~d~vv~~a 86 (277)
T PRK06180 78 PIDVLVNNA 86 (277)
T ss_pred CCCEEEECC
Confidence 578888774
No 459
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.32 E-value=20 Score=34.90 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=36.5
Q ss_pred HhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715 136 AAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~ 181 (384)
...+.++++||=.|||. |.++..+++. |.+|++++.+++-.+.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34567889999999975 7676666765 7799999999988888865
No 460
>PRK05855 short chain dehydrogenase; Validated
Probab=67.28 E-value=32 Score=35.64 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=49.5
Q ss_pred CCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
+.++|=+|+ +|.++..+ ++.|.+|+.++.+..-.+.+.+.+.. ..++.++.+|+.+...-..+.+... ...+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR--AEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 356777776 45555444 44588999999998776665554432 2368888999887543222221111 1224
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|.+|.|.
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 678888774
No 461
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=67.25 E-value=19 Score=35.97 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHH---HHHHhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGL---VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~---a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.+.+||=+| |+|.++..+++ .|.+|+++..++.-... ..+.....++++++.+|+.+...-. .++..
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~---~~~~~-- 132 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLR---KVLFS-- 132 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHH---HHHHH--
Confidence 456899888 57887766654 48899999987643221 1111112247899999998754211 11110
Q ss_pred cCCCcceEeecc
Q 016715 214 SSSGFAKVVANI 225 (384)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (384)
....+|.||.+.
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 011578888654
No 462
>PRK06484 short chain dehydrogenase; Validated
Probab=67.17 E-value=35 Score=35.15 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=48.5
Q ss_pred CCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 142 GDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 142 ~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
++.+|=.|++.| .++..|++.|++|+.++.++.-++.+.+... .++..+.+|..+..--..+.+... ...+..
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQ--ARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence 567777777654 2334445568999999998877766665442 356677888876542221111111 122568
Q ss_pred ceEeecc
Q 016715 219 AKVVANI 225 (384)
Q Consensus 219 d~Vv~Nl 225 (384)
|.+|.|.
T Consensus 345 d~li~nA 351 (520)
T PRK06484 345 DVLVNNA 351 (520)
T ss_pred CEEEECC
Confidence 9999874
No 463
>PRK05717 oxidoreductase; Validated
Probab=66.76 E-value=40 Score=30.89 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=47.7
Q ss_pred CCCEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~ 215 (384)
.+++||=.|.+ |.++..+ ++.|++|+.++.++.-...+.+.. ..++.++.+|+.+...-.. +..+.. ..
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 82 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLG---QF 82 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 46788887764 4444444 445889999998865444433332 1367888999887542211 111111 12
Q ss_pred CCcceEeeccCc
Q 016715 216 SGFAKVVANIPF 227 (384)
Q Consensus 216 ~~~d~Vv~NlPy 227 (384)
+..|.+|.|..+
T Consensus 83 g~id~li~~ag~ 94 (255)
T PRK05717 83 GRLDALVCNAAI 94 (255)
T ss_pred CCCCEEEECCCc
Confidence 467898877543
No 464
>PRK09291 short chain dehydrogenase; Provisional
Probab=66.68 E-value=35 Score=31.16 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=45.5
Q ss_pred CEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (384)
.+||=.|++ |.++..+ ++.|++|+++..++.-.+.+...... ..++.++.+|..+..--. .. ....
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~-----~~~~ 73 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRA---QA-----AEWD 73 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHH---HH-----hcCC
Confidence 468888875 4444444 44588999999887666555544332 236888888887643111 01 1136
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.||.|.
T Consensus 74 id~vi~~a 81 (257)
T PRK09291 74 VDVLLNNA 81 (257)
T ss_pred CCEEEECC
Confidence 78888774
No 465
>PRK06484 short chain dehydrogenase; Validated
Probab=66.67 E-value=32 Score=35.43 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcch---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~~ 216 (384)
.++.+|=.|++.| .++..|++.|++|+.++.+..-++.+.+.+. .++.++..|..+..--. .+..+.+ ..+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG--PDHHALAMDVSDEAQIREGFEQLHR---EFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEeccCCHHHHHHHHHHHHH---HhC
Confidence 4678888888765 3344455568999999998877666555442 35677888876643221 1111111 124
Q ss_pred CcceEeecc
Q 016715 217 GFAKVVANI 225 (384)
Q Consensus 217 ~~d~Vv~Nl 225 (384)
..|++|.|.
T Consensus 79 ~iD~li~na 87 (520)
T PRK06484 79 RIDVLVNNA 87 (520)
T ss_pred CCCEEEECC
Confidence 678898874
No 466
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=66.56 E-value=10 Score=36.35 Aligned_cols=56 Identities=13% Similarity=0.319 Sum_probs=42.5
Q ss_pred HHHhcCCCchHHHHHhh--hc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 328 SSAFNGKRKMLRKSLQH--LC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 328 ~~~F~~rrk~l~~~l~~--~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
...+..+++.|+..|-. .. +.-...++|=.++|+|..++.+||.+|+.+|+..+..
T Consensus 157 ~~~l~~~~~~IK~~LLDQ~~vaGIGNiya~EiLf~A~IhP~~~~~~Ls~~~~~~L~~~i~~ 217 (282)
T PRK13945 157 KKKLKKRTRSIKTALLDQSIVAGIGNIYADESLFKAGIHPTTPAGQLKKKQLERLREAIIE 217 (282)
T ss_pred HHHHhcCCccHHHHhhcCCeEeccchhHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 34446788899888742 21 2333477888999999999999999999999987654
No 467
>PRK08177 short chain dehydrogenase; Provisional
Probab=66.37 E-value=22 Score=31.98 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=43.2
Q ss_pred EEEEEcCcchHH----HHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 144 IVLEIGPGTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 144 ~VLEIG~G~G~l----t~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
+||=.|+. |.+ +..|++.|.+|++++.++.-.+.+.+ ..++.+..+|+.+...-..+.+.. .....|
T Consensus 3 ~vlItG~s-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~----~~~~id 73 (225)
T PRK08177 3 TALIIGAS-RGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----LPGVHIEKLDMNDPASLDQLLQRL----QGQRFD 73 (225)
T ss_pred EEEEeCCC-chHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----ccccceEEcCCCCHHHHHHHHHHh----hcCCCC
Confidence 56766764 444 44455568899999988765444332 136777788877643222222211 123688
Q ss_pred eEeeccC
Q 016715 220 KVVANIP 226 (384)
Q Consensus 220 ~Vv~NlP 226 (384)
.||.|..
T Consensus 74 ~vi~~ag 80 (225)
T PRK08177 74 LLFVNAG 80 (225)
T ss_pred EEEEcCc
Confidence 8887753
No 468
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.10 E-value=16 Score=34.82 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=35.4
Q ss_pred cCCCCCEEEEEcCc-chHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 016715 138 AVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 138 ~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~avE~d~~~~~~a~~ 181 (384)
.+.++++||..|+| .|..+..+++. |.+|++++.++...+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 45678899998877 47777777775 8899999999998888855
No 469
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.03 E-value=73 Score=26.69 Aligned_cols=43 Identities=26% Similarity=0.477 Sum_probs=28.4
Q ss_pred CCCEEEEEcCcc--hHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHh
Q 016715 141 EGDIVLEIGPGT--GSLTNVLLNAG-ATVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 141 ~~~~VLEIG~G~--G~lt~~La~~~-~~V~avE~d~~~~~~a~~~~ 183 (384)
.+.+|+-+|||. +.+...+++.+ .+|+.++.+++-.+.+.+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 467899999973 23333444444 67999999987666655443
No 470
>PRK06500 short chain dehydrogenase; Provisional
Probab=65.95 E-value=52 Score=29.74 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcchHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCC
Q 016715 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~ 216 (384)
++++||=.|++ |.++.. +++.|++|++++.+++.++.+.+... .++.++++|..+......+.+.... ..+
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 79 (249)
T PRK06500 5 QGKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALAE--AFG 79 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH--HhC
Confidence 35677777765 444444 44558899999998776655544432 3677888887765422211111111 124
Q ss_pred CcceEeeccC
Q 016715 217 GFAKVVANIP 226 (384)
Q Consensus 217 ~~d~Vv~NlP 226 (384)
..|.||.|..
T Consensus 80 ~id~vi~~ag 89 (249)
T PRK06500 80 RLDAVFINAG 89 (249)
T ss_pred CCCEEEECCC
Confidence 6788887754
No 471
>PRK06940 short chain dehydrogenase; Provisional
Probab=65.62 E-value=42 Score=31.44 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=48.0
Q ss_pred CEEEEEcCcchHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcCC-CCeEEEEccccccchhhhhhhHHhhhccCCCc
Q 016715 143 DIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~---~~~V~avE~d~~~~~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (384)
+.+|=.|+ |.++..+++. |++|+.++.++.-++.+.+.+... .++.++.+|+.+...-..+.+... ..+..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~---~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ---TLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH---hcCCC
Confidence 35565564 3576666653 789999999877665554444322 367788889877542221111111 12568
Q ss_pred ceEeeccCc
Q 016715 219 AKVVANIPF 227 (384)
Q Consensus 219 d~Vv~NlPy 227 (384)
|.+|.|.-.
T Consensus 78 d~li~nAG~ 86 (275)
T PRK06940 78 TGLVHTAGV 86 (275)
T ss_pred CEEEECCCc
Confidence 999988643
No 472
>PRK10445 endonuclease VIII; Provisional
Probab=65.43 E-value=16 Score=34.59 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=41.8
Q ss_pred HHHhcCC---CchHHHHHhh--hc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 328 SSAFNGK---RKMLRKSLQH--LC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 328 ~~~F~~r---rk~l~~~l~~--~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
...+..+ ++.|+..|-. +. +.-...++|=.++|+|..++.+||.+|+.+|+..+.+
T Consensus 141 ~~~l~~~~~~~~~IK~~LLDQ~~vaGIGNiyadEiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~ 204 (263)
T PRK10445 141 KERLLSPRFRNRQFSGLLLDQAFLAGLGNYLRVEILWQAGLTPQHKAKDLNEAQLDALAHALLD 204 (263)
T ss_pred HHHHhcCccccccHHHHHhcCCccccccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 3445555 7788887732 22 2333478888999999999999999999999987754
No 473
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=65.12 E-value=63 Score=30.68 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=58.2
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCC--CeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.+.++|=-|+-+|. ++..|+++|.+|+.|-.+.+-++.+.+.+.... .+.++..|..+.+-.....+.... ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~--~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE--RG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh--cC
Confidence 45688888875553 345566679999999999998888888776422 578889998876543322222211 22
Q ss_pred CCcceEeeccCccc
Q 016715 216 SGFAKVVANIPFNI 229 (384)
Q Consensus 216 ~~~d~Vv~NlPy~i 229 (384)
...|++|-|--|..
T Consensus 83 ~~IdvLVNNAG~g~ 96 (265)
T COG0300 83 GPIDVLVNNAGFGT 96 (265)
T ss_pred CcccEEEECCCcCC
Confidence 46889998865533
No 474
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=64.89 E-value=45 Score=30.62 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=43.9
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhc-CCCCeEEEEccccccchhhhhhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~-~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~ 215 (384)
.++.+|=.|+. |.++..++ +.|++|++++.+.. +.+.+.+. ...++..+.+|..+..--..+.+-... ..
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 83 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA--EF 83 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--Hh
Confidence 35788888875 44444444 45889999886542 11111221 123677888888764322211111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.+|.|.-
T Consensus 84 ~~~D~li~~Ag 94 (253)
T PRK08993 84 GHIDILVNNAG 94 (253)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 475
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.68 E-value=11 Score=35.75 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=42.1
Q ss_pred HHhcCCCchHHHHHhh--hc---ChHHHHHHHHhCCCCCCCCCCcCCHHHHHHHHHHHHh
Q 016715 329 SAFNGKRKMLRKSLQH--LC---TSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383 (384)
Q Consensus 329 ~~F~~rrk~l~~~l~~--~~---~~~~~~~~l~~~~l~~~~R~~~Ls~~~~~~L~~~~~~ 383 (384)
..+..+++.|+..|.. .. +.-...++|=.++|+|..++.+||.+|+.+|+..+.+
T Consensus 149 ~~l~~~~~~Ik~~LlDQ~vvaGIGNiyadEiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (272)
T TIGR00577 149 EKLAKSKRKIKTALLDQRLVAGIGNIYADEVLFRAGIHPERLANSLSKEECELLHRAIKE 208 (272)
T ss_pred HHHhcCCCcHHHHHhcCCeEecccHHHHHHHHHHcCCCcchhhccCCHHHHHHHHHHHHH
Confidence 3445778888888742 21 2333478888999999999999999999999987654
No 476
>PRK07074 short chain dehydrogenase; Provisional
Probab=64.59 E-value=57 Score=29.78 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=47.1
Q ss_pred CEEEEEcCcchHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~L----a~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (384)
+++|=.|++. .++..+ ++.|++|++++.++.-.+.+.+.+. ..++.++.+|+.+...-. .+..+.. ..+.
T Consensus 3 k~ilItGat~-~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~ 77 (257)
T PRK07074 3 RTALVTGAAG-GIGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAAA---ERGP 77 (257)
T ss_pred CEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH---HcCC
Confidence 4677777754 344444 4458899999998776655554442 236888899987754221 1111111 1135
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.||.|.
T Consensus 78 ~d~vi~~a 85 (257)
T PRK07074 78 VDVLVANA 85 (257)
T ss_pred CCEEEECC
Confidence 78888765
No 477
>PRK08278 short chain dehydrogenase; Provisional
Probab=64.48 E-value=46 Score=31.04 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcchHHHH----HHHHcCCcEEEEeCCHHH-------HHHHHHHhcC-CCCeEEEEccccccchhhhhh-h
Q 016715 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHM-------VGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-S 207 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~avE~d~~~-------~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~ 207 (384)
.++++|=.|++. .++. .|+++|++|+.++.+..- ++.+.+.+.. ..++.++.+|+.+...-..+. .
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGASR-GIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 356888888754 4444 444568899999876431 2222222222 236888889987754322111 1
Q ss_pred HHhhhccCCCcceEeeccC
Q 016715 208 LFERRKSSSGFAKVVANIP 226 (384)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlP 226 (384)
+.+ ..+..|.+|.|..
T Consensus 84 ~~~---~~g~id~li~~ag 99 (273)
T PRK08278 84 AVE---RFGGIDICVNNAS 99 (273)
T ss_pred HHH---HhCCCCEEEECCC
Confidence 111 1246788887754
No 478
>PRK06114 short chain dehydrogenase; Provisional
Probab=64.47 E-value=56 Score=29.91 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCH-HHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQ-HMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~-~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.++.+|=.|++ |.++..+++ .|++|+.++.+. ..++.+.+.+.. ..++.++.+|+.+..--....+-.. ..
T Consensus 7 ~~k~~lVtG~s-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~ 83 (254)
T PRK06114 7 DGQVAFVTGAG-SGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE--AE 83 (254)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 45688888754 456665554 488999998764 233333333322 2367788888876432211111111 12
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.+|.|..
T Consensus 84 ~g~id~li~~ag 95 (254)
T PRK06114 84 LGALTLAVNAAG 95 (254)
T ss_pred cCCCCEEEECCC
Confidence 256788988754
No 479
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=64.25 E-value=17 Score=34.98 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=37.7
Q ss_pred hcCCCCCEEEEEcCcchHHHHHHHHcCCcEEEEeCCHHHHHHHHHHh
Q 016715 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avE~d~~~~~~a~~~~ 183 (384)
+....|.+|.-||+|.-....+|+...++|.+||+++.-++.-+-++
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHH
Confidence 34456889999999977788888888889999999998877655444
No 480
>PRK12828 short chain dehydrogenase; Provisional
Probab=64.19 E-value=44 Score=29.86 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=45.2
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhh-hhhHHhhhccC
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~-~~~~~~~~~~~ 215 (384)
++++||=.|++ |.++..++ +.|++|++++.++.-.......... .+++++.+|+.+...-.. +....+ ..
T Consensus 6 ~~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (239)
T PRK12828 6 QGKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-DALRIGGIDLVDPQAARRAVDEVNR---QF 80 (239)
T ss_pred CCCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-cCceEEEeecCCHHHHHHHHHHHHH---Hh
Confidence 35678878754 55555554 4588999999977544333222221 256777788776432111 111111 12
Q ss_pred CCcceEeeccC
Q 016715 216 SGFAKVVANIP 226 (384)
Q Consensus 216 ~~~d~Vv~NlP 226 (384)
+..|.|+.+..
T Consensus 81 ~~~d~vi~~ag 91 (239)
T PRK12828 81 GRLDALVNIAG 91 (239)
T ss_pred CCcCEEEECCc
Confidence 45788887654
No 481
>PRK06482 short chain dehydrogenase; Provisional
Probab=64.15 E-value=51 Score=30.60 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=47.2
Q ss_pred CEEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccCCC
Q 016715 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (384)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (384)
++||=.|+ +|.++..++ +.|.+|++++.++..++.++.... .++.++.+|+.+...-. .+..+.. ..+.
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~ 76 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAFA---ALGR 76 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHHH---HcCC
Confidence 46777776 455555544 458899999999877666554432 37888899988754221 1111111 1245
Q ss_pred cceEeecc
Q 016715 218 FAKVVANI 225 (384)
Q Consensus 218 ~d~Vv~Nl 225 (384)
.|.||.|.
T Consensus 77 id~vi~~a 84 (276)
T PRK06482 77 IDVVVSNA 84 (276)
T ss_pred CCEEEECC
Confidence 68888764
No 482
>PLN02740 Alcohol dehydrogenase-like
Probab=64.14 E-value=20 Score=35.41 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=35.3
Q ss_pred HhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715 136 AAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~ 181 (384)
.....++++||=+|+|. |.++..+++. |+ +|+++|.+++-.+.+++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34567899999999874 6666666665 77 69999999988888865
No 483
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=64.03 E-value=54 Score=29.91 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred EEEEEcCcchHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccCCCcc
Q 016715 144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (384)
Q Consensus 144 ~VLEIG~G~G~lt~~La----~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (384)
+||=+|++ |.++..++ +.|++|++++.++.-++.+..... .++.++.+|+.+..--........ ...+..|
T Consensus 2 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~id 76 (248)
T PRK10538 2 IVLVTGAT-AGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLP--AEWRNID 76 (248)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHHHHHHHHH--HHcCCCC
Confidence 45555544 44454444 458899999999876665554432 367888899877532111111111 0124578
Q ss_pred eEeecc
Q 016715 220 KVVANI 225 (384)
Q Consensus 220 ~Vv~Nl 225 (384)
.||.|.
T Consensus 77 ~vi~~a 82 (248)
T PRK10538 77 VLVNNA 82 (248)
T ss_pred EEEECC
Confidence 888664
No 484
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=63.93 E-value=24 Score=34.69 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=36.2
Q ss_pred HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 016715 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~avE~d~~~~~~a~~ 181 (384)
+.....++++||=.|+|. |.++..+++. |+ +|+++|.++.-.+.+++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 344567889999999864 6666666665 77 79999999988888865
No 485
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.79 E-value=26 Score=33.85 Aligned_cols=48 Identities=25% Similarity=0.194 Sum_probs=35.4
Q ss_pred HHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 016715 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~avE~d~~~~~~a~~~ 182 (384)
.....+++++||=.|+|. |.++..+++. |++|++++.++.-.+.+++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 345667899999999763 5555556654 78999999998877777663
No 486
>PRK12743 oxidoreductase; Provisional
Probab=63.75 E-value=47 Score=30.47 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=46.3
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEe-CCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhh-hHHhhhcc
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIE-KDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS 214 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE-~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~ 214 (384)
+++||=.|++ |.++..+++ .|++|+.+. .+....+.+.+.+.. ..++.++.+|..+..--..+. .+.. .
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 77 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQ---R 77 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---H
Confidence 3578888864 556666654 488998775 355444444443332 237888999987754222111 1111 1
Q ss_pred CCCcceEeeccC
Q 016715 215 SSGFAKVVANIP 226 (384)
Q Consensus 215 ~~~~d~Vv~NlP 226 (384)
.+..|.+|.|.-
T Consensus 78 ~~~id~li~~ag 89 (256)
T PRK12743 78 LGRIDVLVNNAG 89 (256)
T ss_pred cCCCCEEEECCC
Confidence 246788887743
No 487
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=63.68 E-value=27 Score=33.58 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=55.4
Q ss_pred cCCCC--CEEEEEcC--cchHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhh
Q 016715 138 AVQEG--DIVLEIGP--GTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER 211 (384)
Q Consensus 138 ~~~~~--~~VLEIG~--G~G~lt~~La~~-~~-~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~ 211 (384)
...++ ++||=.|+ |.|..+..+++. |+ +|++++.+++-.+.+++.+.. + .++..+ +.++.+.+...
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-~--~vi~~~--~~~~~~~i~~~--- 220 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-D--AAINYK--TDNVAERLREL--- 220 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-c--EEEECC--CCCHHHHHHHH---
Confidence 34544 89998886 467777777775 87 799999998877777765421 1 222221 11111111100
Q ss_pred hccCCCcceEeeccCccccHHHHHHhcccCCCe
Q 016715 212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (384)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i~~~il~~L~~~g~~~ 244 (384)
....+|.|+....-......+..+.++|.++
T Consensus 221 --~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv 251 (345)
T cd08293 221 --CPEGVDVYFDNVGGEISDTVISQMNENSHII 251 (345)
T ss_pred --CCCCceEEEECCCcHHHHHHHHHhccCCEEE
Confidence 1235788886544333355566666666543
No 488
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=63.66 E-value=60 Score=30.44 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=54.0
Q ss_pred CCEEEEEcCcchH--H-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhh-hhhhHHhhhccCCC
Q 016715 142 GDIVLEIGPGTGS--L-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (384)
Q Consensus 142 ~~~VLEIG~G~G~--l-t~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (384)
++.|+==|+++|. - ++.|++.|++|+++....+-++.+...+.. +.+..+.-|..+..--+ ......+ ..+.
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~---~~g~ 81 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPE---EFGR 81 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHH---hhCc
Confidence 4567777766653 3 355666799999999999999888888754 46777778877753211 1111111 2367
Q ss_pred cceEeeccC
Q 016715 218 FAKVVANIP 226 (384)
Q Consensus 218 ~d~Vv~NlP 226 (384)
.|++|.|--
T Consensus 82 iDiLvNNAG 90 (246)
T COG4221 82 IDILVNNAG 90 (246)
T ss_pred ccEEEecCC
Confidence 899998853
No 489
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=63.48 E-value=17 Score=33.25 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhhhHHhhhccC-CCcceEeeccCc
Q 016715 156 TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANIPF 227 (384)
Q Consensus 156 t~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~~~-~~~d~Vv~NlPy 227 (384)
+..+++.|++|+.++.+..-++...+.+......+++.+|+.+-.--+.+.+.... .. +..|.+|.|..+
T Consensus 13 a~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~g~iD~lV~~a~~ 83 (241)
T PF13561_consen 13 ARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVE--RFGGRIDILVNNAGI 83 (241)
T ss_dssp HHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHH--HHCSSESEEEEEEES
T ss_pred HHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHh--hcCCCeEEEEecccc
Confidence 34555669999999999987533333332212345788998764432222221111 22 678988877543
No 490
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=63.36 E-value=31 Score=33.29 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=37.0
Q ss_pred HhcCCCCCEEEEEcC--cchHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHh
Q 016715 136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (384)
Q Consensus 136 ~l~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~avE~d~~~~~~a~~~~ 183 (384)
.....+|++||=.|+ |.|.++..+++. |++|+++..+++-.+.+++.+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l 196 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL 196 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Confidence 345678999998886 457777777765 889999998888888887644
No 491
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.33 E-value=19 Score=35.09 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=32.7
Q ss_pred cCCCCCEEEEEcCcc-hHHHHHHHHc---CCcEEEEeCCHHHHHHHHH
Q 016715 138 AVQEGDIVLEIGPGT-GSLTNVLLNA---GATVLAIEKDQHMVGLVRE 181 (384)
Q Consensus 138 ~~~~~~~VLEIG~G~-G~lt~~La~~---~~~V~avE~d~~~~~~a~~ 181 (384)
...++++||=+|||. |.++..++++ +.+|+++|.++.-++.++.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 346789999999875 5555565653 3589999999887777764
No 492
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.32 E-value=41 Score=32.24 Aligned_cols=83 Identities=22% Similarity=0.213 Sum_probs=55.0
Q ss_pred CCCEEEEEcCcchH---HHHHHHHcCCcEEEEeCCHHHHHHHHH----HhcCCCCeEEEEccccccchhhhhhhHHhhhc
Q 016715 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRE----RFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (384)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~avE~d~~~~~~a~~----~~~~~~~v~~~~gD~~~~~~~~~~~~~~~~~~ 213 (384)
.++.||==||-+|. ++..++++|++++-+-...+-++...+ ..... ++.++++|..+.+.-..++++...
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~-- 87 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR-- 87 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH--
Confidence 46788888987763 455666779987777666555555533 33222 599999999998765544444332
Q ss_pred cCCCcceEeeccC
Q 016715 214 SSSGFAKVVANIP 226 (384)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (384)
..+..|++|.|--
T Consensus 88 ~fg~vDvLVNNAG 100 (282)
T KOG1205|consen 88 HFGRVDVLVNNAG 100 (282)
T ss_pred hcCCCCEEEecCc
Confidence 3477899998843
No 493
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=63.29 E-value=6.9 Score=36.00 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcchHHHHHHHHc--CCcEEEEeCCHHHHHHHHHH
Q 016715 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER 182 (384)
Q Consensus 127 ~~~~~~il~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avE~d~~~~~~a~~~ 182 (384)
|-+++..++.+.+.++..-+|.--|.|..|..+.+. ..+++++|.||-+.+.+.-.
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 456788899999999999999999999999999987 45899999999887766643
No 494
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=62.97 E-value=31 Score=32.78 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=36.5
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHh---cCCCCeEEEEccccccc
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERF---ASIDQLKVLQEDFVKCH 200 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~---~~~~~v~~~~gD~~~~~ 200 (384)
+.+||=.|+ +|.++..+++ .|.+|+++..+........... ...++++++.+|+.+..
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEG 68 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcc
Confidence 567887775 6777776665 4789998887654322222111 11247899999998754
No 495
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=62.94 E-value=27 Score=33.58 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=35.2
Q ss_pred HHHhcCCCCCEEEEEcCcc-hHHHHHHHHc-CCc-EEEEeCCHHHHHHHHH
Q 016715 134 AAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GAT-VLAIEKDQHMVGLVRE 181 (384)
Q Consensus 134 l~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~-V~avE~d~~~~~~a~~ 181 (384)
+..+.+.++++||=+|+|. |.++..+++. |++ |++++.++.-.+.+++
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3455667889999998763 5555556654 777 9999999888777754
No 496
>PRK06198 short chain dehydrogenase; Provisional
Probab=62.85 E-value=47 Score=30.37 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=46.3
Q ss_pred CCCEEEEEcCcchHHHHHHH----HcCCc-EEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchhhhhhhHHhhhcc
Q 016715 141 EGDIVLEIGPGTGSLTNVLL----NAGAT-VLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~-V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~~~~~~~~~ 214 (384)
.+++||=.|++ |.++..++ +.|++ |+.++.++.-.......+.. ..++.++.+|+.+...-....+.... .
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~ 81 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE--A 81 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH--H
Confidence 45688888864 44555544 45787 99999887655443333322 23677788898764322211111110 1
Q ss_pred CCCcceEeecc
Q 016715 215 SSGFAKVVANI 225 (384)
Q Consensus 215 ~~~~d~Vv~Nl 225 (384)
.+..|.+|.|.
T Consensus 82 ~g~id~li~~a 92 (260)
T PRK06198 82 FGRLDALVNAA 92 (260)
T ss_pred hCCCCEEEECC
Confidence 14578888764
No 497
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=62.71 E-value=74 Score=32.06 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcchHHH-----HHHHHcCCcEEEEeCCHHHH------------HHHHHHhcCCC-CeEEEEccccccchh
Q 016715 141 EGDIVLEIGPGTGSLT-----NVLLNAGATVLAIEKDQHMV------------GLVRERFASID-QLKVLQEDFVKCHIR 202 (384)
Q Consensus 141 ~~~~VLEIG~G~G~lt-----~~La~~~~~V~avE~d~~~~------------~~a~~~~~~~~-~v~~~~gD~~~~~~~ 202 (384)
.++++|=+|+.+|.-. ..+ ..|+++++++.+.+-. +.+.+.+...+ .+..+.+|+.+-.-.
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v 118 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK 118 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 4579999999776633 355 6689999888543111 11222222222 466788999875433
Q ss_pred hhhhhHHhhhccCCCcceEeeccCcc
Q 016715 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (384)
+...+.... ..+..|.+|.|+.+-
T Consensus 119 ~~lie~I~e--~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 119 QKVIELIKQ--DLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHH--hcCCCCEEEECCccC
Confidence 322222221 225789999987664
No 498
>PRK08309 short chain dehydrogenase; Provisional
Probab=62.52 E-value=91 Score=27.48 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=49.2
Q ss_pred EEEEEcCcchHHH---HHHHHcCCcEEEEeCCHHHHHHHHHHhcCCCCeEEEEccccccchhhhhh-hHHhhhccCCCcc
Q 016715 144 IVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSSGFA 219 (384)
Q Consensus 144 ~VLEIG~G~G~lt---~~La~~~~~V~avE~d~~~~~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~-~~~~~~~~~~~~d 219 (384)
+++=+|+ +|..+ ..|++.|.+|+.+..++.-.+.+.......+++.++.+|+.+..--..+. .... ..+..|
T Consensus 2 ~vlVtGG-tG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~---~~g~id 77 (177)
T PRK08309 2 HALVIGG-TGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE---KNGPFD 77 (177)
T ss_pred EEEEECc-CHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH---HcCCCe
Confidence 4566663 35544 34445588999999988766665554433346778888887643222111 1111 124566
Q ss_pred eEeeccCccccHHHHHHh
Q 016715 220 KVVANIPFNISTDVIKQL 237 (384)
Q Consensus 220 ~Vv~NlPy~i~~~il~~L 237 (384)
.+|...-...+..+....
T Consensus 78 ~lv~~vh~~~~~~~~~~~ 95 (177)
T PRK08309 78 LAVAWIHSSAKDALSVVC 95 (177)
T ss_pred EEEEeccccchhhHHHHH
Confidence 766655444444444333
No 499
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.30 E-value=57 Score=29.23 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=48.5
Q ss_pred CCEEEEEcCcchHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcC-CCCeEEEEccccccchh-hhhhhHHhhhccC
Q 016715 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (384)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~avE~d~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~-~~~~~~~~~~~~~ 215 (384)
+++||=.|+ +|.++..+++ +|.+|+++..++.-.+.....+.. ..++.++.+|+.+...- ..+..+.. ..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE---AF 80 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 467887776 6777666654 488999999988766555444432 23678888998764321 11111111 11
Q ss_pred CCcceEeecc
Q 016715 216 SGFAKVVANI 225 (384)
Q Consensus 216 ~~~d~Vv~Nl 225 (384)
+..|.||.+.
T Consensus 81 ~~id~vi~~a 90 (246)
T PRK05653 81 GALDILVNNA 90 (246)
T ss_pred CCCCEEEECC
Confidence 4568887764
No 500
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.65 E-value=59 Score=29.79 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCCEEEEEcCcc-hHHHH----HHHHcCCcEEEEeCC------------HHHHHHHHHHhcC-CCCeEEEEccccccchh
Q 016715 141 EGDIVLEIGPGT-GSLTN----VLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIR 202 (384)
Q Consensus 141 ~~~~VLEIG~G~-G~lt~----~La~~~~~V~avE~d------------~~~~~~a~~~~~~-~~~v~~~~gD~~~~~~~ 202 (384)
.++.||=.|++. |.++. .|++.|++|+.++.+ +.... +...+.. ..++.++.+|+.+..--
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHH
Confidence 356799999753 34444 444568899999765 22222 2222222 23688899998775432
Q ss_pred hhhhhHHhhhccCCCcceEeecc
Q 016715 203 SHMLSLFERRKSSSGFAKVVANI 225 (384)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~Nl 225 (384)
..+.+.... ..+..|.||.|.
T Consensus 83 ~~~~~~~~~--~~g~id~vi~~a 103 (256)
T PRK12748 83 NRVFYAVSE--RLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHH--hCCCCCEEEECC
Confidence 211111111 124678888775
Done!