RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016715
(384 letters)
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 225 bits (577), Expect = 2e-72
Identities = 65/268 (24%), Positives = 131/268 (48%), Gaps = 17/268 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D+
Sbjct: 3 MRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V +++++ + + Q D ++ S+ + +VV N+P+NIST ++
Sbjct: 63 LVAFLQKKYNQQKNITIYQNDALQFDFS----SVKTDKP-----LRVVGNLPYNISTPLL 113
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
L ++ +LQ+E R+ E + +Y +++ ++ + Y F V F
Sbjct: 114 FHLFSQIHCIEDMHFMLQKEVVRRITAEVG--SHDYGRLSVMAQYFCDNTYLFTVSPQAF 171
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P P+V++A++ + + +V AF+ +RK + +L+ L +
Sbjct: 172 TPPPRVESAIIRLIPRHNFTPV-AKNLDQLSHVVKEAFSYRRKTVGNALKKLINPSQWPL 230
Query: 354 ALGDVGLPATSRPEELTLDDFVKLHNLI 381
+ RP+ELT++DFVK+ N++
Sbjct: 231 L----EINPQLRPQELTVEDFVKISNIL 254
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 223 bits (570), Expect = 6e-71
Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 31/292 (10%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
+ + S P+K LGQ ++++ ++ +A + + D+VLEIG G G LT L
Sbjct: 12 SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN 71
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V IE D+ + + + ++++ D +K + + F KVV
Sbjct: 72 AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVV 119
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSE 281
AN+P+ IS+ + +L+ G F VL+ Q E A R+V T +Y +++ V ++
Sbjct: 120 ANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAAAG--TKDYGRLSVAVQSRAD 175
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
E KVP + F+P+PKV +A+V K + + + F + + F + K +RK+
Sbjct: 176 VEIVAKVPPSAFYPKPKVYSAIVKIKPNK--GKYHIENENFFDDFLRAIFQHRNKSVRKA 233
Query: 342 LQHLCTSLEIEKAL------------GDVGLPATSRPEELTLDDFVKLHNLI 381
L L K ++ + +L++ D V L N
Sbjct: 234 LIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEF 285
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 219 bits (560), Expect = 1e-69
Identities = 70/285 (24%), Positives = 139/285 (48%), Gaps = 20/285 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--- 160
+ +G F RK GQ+++++ + D + AA + G+ ++EIGPG G+LT ++
Sbjct: 5 MSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL 64
Query: 161 -NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
G+ + A+E D+ ++G + +RF + L++ D + S E
Sbjct: 65 ATPGSPLHAVELDRDLIGRLEQRFG--ELLELHAGDALTFDFGSIARPGDEPS------L 116
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
+++ N+P+NIS+ ++ L+ + + +LQ E R+V EP T + +++ + +
Sbjct: 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQY 174
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+ VP +F P PKVD+A+V + PAV +V++AF+ +RKML
Sbjct: 175 RYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAV-DPAVLGEVVTAAFSQRRKML 233
Query: 339 RKSLQHLCTSLEIEKALGDVGLPATSRPEELTLDDFVKLHNLIVQ 383
R +L ++ + G R E++ +D++V++ +
Sbjct: 234 RNTLGGYRDLVDFDAL----GFDLARRAEDIGVDEYVRVAQAVAS 274
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 215 bits (549), Expect = 2e-68
Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 31/267 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
Q+++ + D++ + E D + EIG G G T L+ V AIE D
Sbjct: 4 KNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + D +VL +D ++ + K+ NIP+NISTD+I
Sbjct: 64 LCKTTENKLVDHDNFQVLNKDILQFKF------------PKNQSYKIFGNIPYNISTDII 111
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
++++ I E+ L+++ A RL+ + R + +F+ + VPR F
Sbjct: 112 RKIV-FDSIADEIYLIVEYGFAKRLL------NTKRSLALFLMAEVDISILSMVPREYFH 164
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P+PKV+++++ K+ + + + V N + K + Q +
Sbjct: 165 PKPKVNSSLIRLNRKK--SRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ-------FNNS 215
Query: 355 LGDVGLPATSRPEELTLDDFVKLHNLI 381
L G+ ++ + F+ L N
Sbjct: 216 LKHAGI---DDLNNISFEQFLSLFNSY 239
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 213 bits (545), Expect = 9e-68
Identities = 63/264 (23%), Positives = 125/264 (47%), Gaps = 15/264 (5%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q+++ + + D + +A Q+G ++EIGPG +LT + + IE D+ + ++
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+L + Q+D + + + + +V N+P+NIST ++ L
Sbjct: 61 THPFLGPKLTIYQQDAMTFNFGELAEKMGQPL-------RVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
D +++ +LQ+E RLV P+ + Y +++ +Y +VP + F P PKV
Sbjct: 114 TDAIADMHFMLQKEVVNRLVAGPN--SKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKV 171
Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVG 359
D+AVV +P V + + + AFN +RK +R SL +L + + L +G
Sbjct: 172 DSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFS----VEVLTGMG 226
Query: 360 LPATSRPEELTLDDFVKLHNLIVQ 383
+ R E +++ + ++ N + +
Sbjct: 227 IDPAMRAENISVAQYCQMANYLAE 250
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 213 bits (544), Expect = 5e-67
Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 47/298 (15%)
Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
+S GR GQH + N I D++ AA ++ DIVLEIG GTG+LT LL V+
Sbjct: 10 HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVIT 69
Query: 169 IEKDQHMVGLVRERF--ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
I+ D M+ V++R + L+V + D +K F ANIP
Sbjct: 70 IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK--------------FDVCTANIP 115
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYK 285
+ IS+ +I +L+ +F VL+ Q+E A R++ S Y + I V + +
Sbjct: 116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG--DSNYSRLTINVKLFCKVTKV 173
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
V R++F P PKVD+ +V K++ +T+ + +++ F+ KRK L +
Sbjct: 174 CNVNRSSFNPPPKVDSVIVKLIPKES---SFLTNFDEWDNLLRICFSRKRKTLHAIFKRN 230
Query: 346 CTSL------------------------EIEKALGDVGLPATSRPEELTLDDFVKLHN 379
L + + R L +DF+KL
Sbjct: 231 AVLNMLEHNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDM-CEKRSINLDENDFLKLLL 287
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 209 bits (535), Expect = 7e-66
Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 49/293 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+GQH + N I + + AA++ D+VLE+GPGTG++T LL V+A E D +
Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + +R +L+VL D +K + F VAN+P+ IS+
Sbjct: 63 VAELHKRVQGTPVASKLQVLVGDVLKTDLPF--------------FDTCVANLPYQISSP 108
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
+ +LL F +L+ Q E ALRLV +P Y ++I + ++ KV +
Sbjct: 109 FVFKLLLHRPFFRCAILMFQREFALRLVAKPG--DKLYCRLSINTQLLARVDHLMKVGKN 166
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
NF P PKV+++VV + K P + + + +V F K K L + + +
Sbjct: 167 NFRPPPKVESSVVRIEPKNP---PPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL 223
Query: 352 EK-------------------------ALGDVGLPATSRPEELTLDDFVKLHN 379
EK L G R + +DDF++L +
Sbjct: 224 EKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLH 275
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 205 bits (523), Expect = 2e-64
Identities = 51/267 (19%), Positives = 108/267 (40%), Gaps = 31/267 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
Q+++ + ++ +Q+ ++E D V EIG G G LT L V +IE D H
Sbjct: 3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L E+ ++ ++ +D ++ + K+V NIP+++ST +I
Sbjct: 63 LFNLSSEKLKLNTRVTLIHQDILQFQF------------PNKQRYKIVGNIPYHLSTQII 110
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
K+++ S++ L+++E R +R + + ++ + K+P F
Sbjct: 111 KKVV-FESRASDIYLIVEEGFYKRT------LDIHRTLGLLLHTQVSIQQLLKLPAECFH 163
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P+PKV++ ++ K + VS N + + L Q +A
Sbjct: 164 PKPKVNSVLIKLTRHTT--DVPDKYWKLYTYFVSKWVNREYRQLFTKNQ-------FHQA 214
Query: 355 LGDVGLPATSRPEELTLDDFVKLHNLI 381
+ + + +T + + + N
Sbjct: 215 MKHAKV---NNLSTITYEQVLSIFNSY 238
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 204 bits (521), Expect = 4e-64
Identities = 77/268 (28%), Positives = 135/268 (50%), Gaps = 29/268 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQ 173
+KS GQH +++ + ++A ++EG+ V+E+G GTG+LT VLL + IE D+
Sbjct: 5 LKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDR 64
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
MV ++ ++L+V+ ED K SL + KVV N+P+N+++ +
Sbjct: 65 EMVENLKSIGD--ERLEVINEDASKFPFC----SLGKE-------LKVVGNLPYNVASLI 111
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
I+ + D V ++Q+E A +L + +++FV + + Y VP F
Sbjct: 112 IENTVYNKDCVPLAVFMVQKEVAEKLQG----KKDTGWLSVFVRTFYDVNYVMTVPPRFF 167
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV +AV+ + V K++ ++ F +RK+LRK + E+
Sbjct: 168 VPPPKVQSAVIKLVKNEK---FPVKDLKNYKKFLTKIFQNRRKVLRKKIP--------EE 216
Query: 354 ALGDVGLPATSRPEELTLDDFVKLHNLI 381
L + G+ +R E+L+L+DF KL+ LI
Sbjct: 217 LLKEAGINPDARVEQLSLEDFFKLYRLI 244
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 204 bits (522), Expect = 5e-64
Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 25/282 (8%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+++AL + G F K GQ+++++ ++ AA G V E+GPG G+LT LL
Sbjct: 8 QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLE 66
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
AGA V AIEKD + ++ E + + ++++ +D + + + +
Sbjct: 67 AGAEVTAIEKDLRLRPVLEETLSGLP-VRLVFQDALLYPWE----EVPQGS-------LL 114
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
VAN+P++I+T ++ +LL G + +V L+Q+E A R+ P T Y + + V ++
Sbjct: 115 VANLPYHIATPLVTRLLKTGRF-ARLVFLVQKEVAERMTARPK--TPAYGVLTLRVAHHA 171
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
E F +P FFP PKV +++V A D P F +V +AF +RK L
Sbjct: 172 VAERLFDLPPGAFFPPPKVWSSLVRLTPTGALDDPG------LFRLVEAAFGKRRKTLLN 225
Query: 341 SLQHLCTSLE-IEKALGDVGLPATSRPEELTLDDFVKLHNLI 381
+L +E+AL +GLP R EEL L+ F +L +
Sbjct: 226 ALAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 154 bits (390), Expect = 1e-43
Identities = 48/313 (15%), Positives = 93/313 (29%), Gaps = 54/313 (17%)
Query: 115 PRKSLGQHYMLNSEINDQ------LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TV 166
+ G Y+ N + ++ L E VL++ PG G + + N
Sbjct: 26 LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 85
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS---LFERRKSSSGFA---- 219
+EK + + +F L++L+ D S+++ +F SS
Sbjct: 86 SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 144
Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
VAN+ S +I Q L +++L + TA +L+
Sbjct: 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 203
Query: 272 INIFVNFYSEPE---------------------YKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
++ +++ + +P A+V
Sbjct: 204 CSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPID 263
Query: 311 ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE--IEKALGDVGLPATSRPEE 368
++ + KR L + L + + D L P +
Sbjct: 264 FD-----FDVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL-KKCPID 317
Query: 369 LTLDDFVKLHNLI 381
LT D+F+ L L
Sbjct: 318 LTNDEFIYLTKLF 330
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 1e-07
Identities = 41/224 (18%), Positives = 72/224 (32%), Gaps = 84/224 (37%)
Query: 69 PKPTRPAHSSIAGVQKGAASACIVCARSQDDD--YHATIKALN--------SKGRFPRKS 118
P R G +G +A + A + + + + KA+ +P S
Sbjct: 260 PGELRSYLKGATGHSQGLVTA-VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 119 L-------------GQ-HYMLN-------------SEINDQLAAAAAVQEGDIVLEIGPG 151
L G ML+ ++ N L A V+ I L G
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE---ISLVNGA- 374
Query: 152 TGSLTNVLLNAGATVLAIEKDQHMVGLV---RERFAS--IDQLKVLQEDFVKCHIRSHML 206
N+++ +G Q + GL R+ A +DQ ++
Sbjct: 375 ----KNLVV-SGPP-------QSLYGLNLTLRKAKAPSGLDQSRI--------------- 407
Query: 207 SLFERRKS--SSGFAKVVANIPFN-----ISTDVIKQLLPMGDI 243
F RK S+ F V + PF+ ++D+I + L ++
Sbjct: 408 -PFSERKLKFSNRFLPVAS--PFHSHLLVPASDLINKDLVKNNV 448
Score = 41.2 bits (96), Expect = 6e-04
Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 68/198 (34%)
Query: 46 QN-QNRHRIAMTTSTLLVFQ----NPLLPKPTRPA-HS--------SIAGVQKGAASACI 91
Q Q A+T F+ L+P A HS S+A V + +
Sbjct: 1730 QFTQ----PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 92 VCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEG--------- 142
V R G Q + E+ A+ G
Sbjct: 1786 VFYR----------------GM-----TMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 143 ---DIVLEIGPGTGSL---TNVLLN--------AGATVLAIEKDQHMVGLVRERFASIDQ 188
+V +G TG L N N AG + A++ +++ ++ + ID
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVN--YNVENQQYVAAG-DLRALDTVTNVLNFIKLQ--KIDI 1879
Query: 189 LKVLQEDFVKCHIRSHML 206
++ LQ+ + H+
Sbjct: 1880 IE-LQKSLSLEEVEGHLF 1896
Score = 40.4 bits (94), Expect = 0.001
Identities = 39/177 (22%), Positives = 60/177 (33%), Gaps = 38/177 (21%)
Query: 12 SL--TERQ-VVSVIYRILGTYCSQMYGLSSNGERAGRQ-NQNRHRIAMTTSTLLVFQNPL 67
SL + VVS G S +YGL+ +A ++ RI + L F N
Sbjct: 369 SLVNGAKNLVVS------GPPQS-LYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRF 420
Query: 68 LPKPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALN------SKGRFPRKSLGQ 121
LP P HS + A+ + ++A K + G R G
Sbjct: 421 LPV-ASPFHSHLL---VPASDLINKDLVKNNVSFNA--KDIQIPVYDTFDGSDLRVLSG- 473
Query: 122 HYMLNSEINDQLAAA-----AAVQEGDI-VLEIGPGT----GSLTNVLLNA-GATVL 167
++ I D + Q +L+ GPG G LT+ + G V+
Sbjct: 474 --SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 37.7 bits (87), Expect = 0.006
Identities = 65/419 (15%), Positives = 120/419 (28%), Gaps = 151/419 (36%)
Query: 50 RHRIAMTTSTLLV-------FQNPLLPKPTR-------PAHSSIAG------------VQ 83
H + + T++ + F +LP+PT P ++ A V+
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEP--TTPAELVGKFLGYVSSLVE 73
Query: 84 KGAASACIVCARS----------QDDDYHATIKALNSKGRFP---RKSLGQHYMLNSEIN 130
+ +D HA L + K L ++Y
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY------- 126
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI 186
+ A + P + L A A ++AI Q G + F
Sbjct: 127 --ITARIMAKR--------PFDKKSNSALFRAVGEGNAQLVAIFGGQ---GNTDDYF--- 170
Query: 187 DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL-----L 238
++L+ L + V I+ +L E +++ KV F ++++ L
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGLNILEWLENPSNT 225
Query: 239 PMGDIFSEV------VLLLQEETALRLVEPSLRTSEYRPINIFV---------------- 276
P D + + ++Q A +V + + + P +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQ--LAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 277 ---------NFYSEP----EYKFKV--------PRTNFFPQPKVDA------------AV 303
+F+ F + P T+ P D+ ++
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 304 VTFKLKQATDYPAVTSTKSFF---SMVS-SAFNGKRKM----LRKSLQHLCTSLEIEKA 354
+Q DY V T S V S NG + + +SL L +L KA
Sbjct: 342 SNLTQEQVQDY--VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Score = 29.6 bits (66), Expect = 2.2
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 37/131 (28%)
Query: 270 RPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV--TFK--LKQATDYPAV---TSTK- 321
RP+ + + E+ VP +FF A+ + F L + T+ A +T
Sbjct: 7 RPLTLS---HGSLEHVLLVPTASFFI-----ASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 322 ----SFFSMVSSAFNGKRK-----MLRKSLQHLCTSLEIEKALG--DV-----GLPATSR 365
F VSS + +L L L D+ L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-----LEGNDIHALAAKLLQEND 113
Query: 366 PEELTLDDFVK 376
+ + +K
Sbjct: 114 TTLVKTKELIK 124
Score = 29.2 bits (65), Expect = 2.7
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 60/142 (42%)
Query: 271 PINIFVNF-----------YSEPEYK----FKVPRTNFFPQPKVDAAVVTFK-----LKQ 310
P+N+ ++F YS ++ K+ F + + TF+ L
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 311 ATDY--PA-VTSTKSFFSMV--------SSAFNGKRKMLRKSLQHLCTSL-EIEKAL--- 355
T + PA K+ F + + F G H SL E AL
Sbjct: 1729 -TQFTQPALTLMEKAAFEDLKSKGLIPADATFAG----------H---SLGEY-AALASL 1773
Query: 356 GDVGLPATSRPEELTLDDFVKL 377
DV ++++ V++
Sbjct: 1774 ADV----------MSIESLVEV 1785
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 50.2 bits (120), Expect = 2e-07
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
+ + + VLE G GTG+LTN LL AG TV IE + M + +E+ +
Sbjct: 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFS 92
Query: 191 VLQEDF 196
+ + DF
Sbjct: 93 ITEGDF 98
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 50.3 bits (120), Expect = 3e-07
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
I + + + +G ++ +IG GTG + L N G V A+E M
Sbjct: 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH 75
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 48.5 bits (116), Expect = 5e-07
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
++ + ++++ G G G LL + I+ + + V+E+F S+
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSV 62
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 48.1 bits (115), Expect = 8e-07
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKV 191
A + D+ +++G GTG +T L V AI+++ + R D + +
Sbjct: 27 CLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL 86
Query: 192 LQEDF 196
++ D
Sbjct: 87 MEGDA 91
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 48.4 bits (115), Expect = 1e-06
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
+A E + LE+G GTG + L+ G +A++ D M+ + R++ A +D
Sbjct: 31 ASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD 85
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 48.2 bits (115), Expect = 1e-06
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
+ L Q G+ +L++G GTG LT + +GA VL + M+ R+ + +
Sbjct: 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLH 103
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 45.6 bits (108), Expect = 7e-06
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
L A ++L++G GTG T L + G + +E +V L R+ S+
Sbjct: 32 VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVT---F 88
Query: 192 LQEDF 196
Sbjct: 89 HHGTI 93
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 45.6 bits (108), Expect = 7e-06
Identities = 12/64 (18%), Positives = 20/64 (31%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
L + + LEIG G+ T L + I+ +G +R +
Sbjct: 43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102
Query: 193 QEDF 196
D
Sbjct: 103 ATDI 106
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 45.8 bits (108), Expect = 7e-06
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
A + + + + R P + + E+ L + + VLE G G G
Sbjct: 3 AMNHSRESYDRLARELGGYRHPWARVLSGP--DPELTFDLWLSRLLTPQTRVLEAGCGHG 60
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
A A + ++ L R D
Sbjct: 61 PDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 45.3 bits (107), Expect = 1e-05
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
L A VLE+ GTG T L V A++ M+ D ++
Sbjct: 38 LERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL--DNVEFR 95
Query: 193 QEDF 196
Q+D
Sbjct: 96 QQDL 99
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 45.3 bits (107), Expect = 1e-05
Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 24/155 (15%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASI---- 186
LA+ A + ++G G G+ + A V E+ Q M R
Sbjct: 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA 87
Query: 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ-------- 236
+++VL+ D + + E F V+ N P+N + D
Sbjct: 88 FSARIEVLEAD-----VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAH 142
Query: 237 ---LLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
D ++ L L+ +E
Sbjct: 143 AMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 68/213 (31%)
Query: 173 QHM---VGLVRERFASIDQLKVLQEDFVK---C-HIRSHMLSLFERRKSSSGFAKVVANI 225
HM G + ++ I L V ++ FV C ++ S+
Sbjct: 5 HHMDFETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSIL---------------- 46
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
S + I ++ D LRL +L + + + FV YK
Sbjct: 47 ----SKEEIDHIIMSKD---------AVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYK 92
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F + +K P++ T+ + +N + + ++ L
Sbjct: 93 F-----------------LMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 346 CTSLEIEKALGDVGLPATSRPEELTLDDFVKLH 378
L++ +AL EL V +
Sbjct: 135 QPYLKLRQAL-----------LELRPAKNVLID 156
Score = 39.1 bits (90), Expect = 0.003
Identities = 43/297 (14%), Positives = 79/297 (26%), Gaps = 89/297 (29%)
Query: 98 DDDYHATIKALNSKGRFPRKSLGQH-YMLNSEIND-QLAAAAAVQEGDIVLEIGPGTGSL 155
+Y + + ++ R P + + ND Q+ A V L++ L
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 156 ---TNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208
NVL++ +G T +A++ V
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD--------------------VCLSY------------- 174
Query: 209 FERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
KV + F I L + + S +L + L ++P+ +
Sbjct: 175 -----------KVQCKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 269 YRPINIFVNFYSEPEYKFKVPRTNFFPQPK----------V-DAAVV-TFKLKQATDYPA 316
NI + +S V +A F L
Sbjct: 218 DHSSNIKLRIHSIQAEL-----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---L 269
Query: 317 VTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG----DVGLPATSRPEE 368
+T+ K +S+A SL H +L ++ + P E
Sbjct: 270 LTTRFKQVTDFLSAA-----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 44.4 bits (105), Expect = 2e-05
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLK 190
++ A+ E +L++G GTG L+ L+ AT ++ + M+ + + RF ++K
Sbjct: 36 VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95
Query: 191 VLQEDFVK 198
++ D+ K
Sbjct: 96 YIEADYSK 103
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 44.1 bits (104), Expect = 3e-05
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
+LE+G G T+ L + +E + + + R D + + F
Sbjct: 46 LLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRF 95
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 43.7 bits (103), Expect = 3e-05
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 99 DDYHATIKALNSKGRFPRKSLG--------QHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+H L +G + G + S + AA A + G+++ +IG
Sbjct: 5 HHHHHHSSGLVPRGSHMSQVPGRPESAFAHDGQITKSPMRALTLAALAPRRGELLWDIGG 64
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRE---RFASIDQLKVLQEDF 196
G+GS++ AG + IE + +++ + +++ +Q
Sbjct: 65 GSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA 113
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 43.7 bits (103), Expect = 3e-05
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
+ G +LE+G G G +L AG V A + + R
Sbjct: 36 KFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG 86
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 43.7 bits (103), Expect = 5e-05
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFAS 185
+ L G VLE G G G+ T +L N A + +I+ + RE
Sbjct: 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 42.8 bits (101), Expect = 7e-05
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
+E VL+IG +G+L + G V IE +E+ + + D
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM 87
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 42.9 bits (101), Expect = 8e-05
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
+ A + VL+IG G G + ++ + MV +
Sbjct: 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 62
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 42.1 bits (99), Expect = 8e-05
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
A G +L+ G G G + L G VL + D ++ ++ F
Sbjct: 41 DAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEAR 92
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 42.5 bits (100), Expect = 1e-04
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
+ A ++ + VL++G G G L L + G + ++ D+ +V R A
Sbjct: 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA 95
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 42.2 bits (100), Expect = 1e-04
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195
+ +G VLEIG G G T ++ V+++E ++ M + + + +K++ D
Sbjct: 65 ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGD 124
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 42.2 bits (99), Expect = 1e-04
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 118 SLGQHYMLNSEINDQLAAA--AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+ M +S + V++ VL++G G G T L G + ++ + M
Sbjct: 28 NQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVM 87
Query: 176 VGLVRERFASIDQLKVLQED 195
+ +ER L ++ D
Sbjct: 88 IQKGKER-GEGPDLSFIKGD 106
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 40.9 bits (96), Expect = 2e-04
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN--VLLNAGATVLAIEKDQHMVGLVRE 181
+ + +A A + + + +IG G+GS+ + T + E + +
Sbjct: 8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67
Query: 182 RFAS--IDQLKVLQEDF 196
+ + +Q+
Sbjct: 68 NAINLGVSDRIAVQQGA 84
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 41.9 bits (98), Expect = 2e-04
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 10/140 (7%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
+A + + VLE G G+G+L VL V E + ++ K
Sbjct: 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-----KF 136
Query: 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI--FSEVVL 249
VK + + F V P++ V K L+ +
Sbjct: 137 NLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE--PWHYLEKVHKSLMEGAPVGFLLPTAN 194
Query: 250 LLQEET-ALRLVEPSLRTSE 268
+ + ++ +L E
Sbjct: 195 QVIKLLESIENYFGNLEVVE 214
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 41.7 bits (97), Expect = 2e-04
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 111 KGRFPRKSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--NAGATV 166
+ P ++L Y + AA + G+ + IG G LT +LL G V
Sbjct: 90 ESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRV 149
Query: 167 LAIEKDQHMVGLVRERFAS--IDQLKVLQED 195
+E + + L R+ +D + V+ D
Sbjct: 150 NVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194
A VLE+ G G LT L+ G V A+E ++ R+R A +
Sbjct: 76 ATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRC 135
Query: 195 DFVKCHIRSHMLSLFER 211
V+ + + +L +R
Sbjct: 136 TLVQGDMSA--FALDKR 150
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 40.6 bits (96), Expect = 3e-04
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
+ VLEIG G+G T +L + V ++E+ + + R R ++D
Sbjct: 72 LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD 123
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQ 188
+L AA++ + VL++ G G + N V+A + + ++ + R Q
Sbjct: 27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 86
Query: 189 LKVLQED 195
++ +Q D
Sbjct: 87 VEYVQGD 93
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 40.3 bits (94), Expect = 5e-04
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
VL+IG G G + G + ++ ++ M+ + V++ D ++
Sbjct: 45 VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIE 92
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 39.5 bits (92), Expect = 5e-04
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185
A + + IV++ G G+ T L V A + + +G +R +
Sbjct: 17 AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 40.0 bits (93), Expect = 6e-04
Identities = 5/49 (10%), Positives = 16/49 (32%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
+++ G G+ T L V+ ++ + + + +
Sbjct: 51 ELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT 99
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 39.9 bits (94), Expect = 6e-04
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERF--ASIDQLKVL 192
A ++ G +LE+G G+G ++ V IE+ +V + A + + V+
Sbjct: 86 IANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVI 145
Query: 193 QED 195
D
Sbjct: 146 LGD 148
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 39.7 bits (93), Expect = 6e-04
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-- 185
+++ ++EG VL++G G G L V AI+ + MV E+
Sbjct: 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG 86
Query: 186 IDQLKVLQED 195
+ ++VL+ +
Sbjct: 87 LKNVEVLKSE 96
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 39.9 bits (93), Expect = 8e-04
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 137 AAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS 185
+ + +++ G G G L VL L G+ I+ + ++ RE F
Sbjct: 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 39.8 bits (93), Expect = 8e-04
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI--- 186
L ++ G +L++G G+G + + G T I+ + R +
Sbjct: 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS 85
Query: 187 DQLKVLQEDF 196
+++ + D
Sbjct: 86 ERVHFIHNDA 95
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 39.8 bits (93), Expect = 8e-04
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID 187
L A ++ ++G G G+ T +L + + I+ D M+ +R + +
Sbjct: 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 39.2 bits (91), Expect = 0.001
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
++ D +L +G G +L+ L G V +++ +V ++ +A + QL+ D
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV 98
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 38.7 bits (91), Expect = 0.001
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
+ + D+V+++G G+G +T + V AI+ + + ++
Sbjct: 29 GKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ 75
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 39.0 bits (91), Expect = 0.002
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASIDQL 189
++ + + E VL+IG G G + GA I+ ++V + ER + +++
Sbjct: 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKI 104
Query: 190 KVLQEDFVK 198
D +
Sbjct: 105 IFEANDILT 113
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
+ +G VLEIG GTG V+ + V+++E + + + + I+ +
Sbjct: 70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVI 129
Query: 191 VLQED 195
+ D
Sbjct: 130 FVCGD 134
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 39.3 bits (91), Expect = 0.002
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195
+ G +++G G T L+ V +++ G + + Q+ L+ED
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDN-----GPMAQSLMDTGQVTWLRED 260
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 38.2 bits (89), Expect = 0.002
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
Y L ++ L A V+ G L++G G G + L G V A +K+ + V
Sbjct: 12 TDKYELTRTHSEVLEAVKVVKPGK-TLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANV 70
Query: 180 RERFAS--IDQLKVLQEDF 196
+ +D L D
Sbjct: 71 ERIKSIENLDNLHTRVVDL 89
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 38.5 bits (89), Expect = 0.002
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 145 VLEIGPGTGSLTNVLLNA--------GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
+L IG G G + +L+ +E + +E A L+ ++ +
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW 115
Query: 197 VKCHI 201
K
Sbjct: 116 HKETS 120
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 38.1 bits (88), Expect = 0.003
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 140 QEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
L+ G G G +T N+L AT +E +HM+ + A + K +
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM 149
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.8 bits (88), Expect = 0.003
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
E +L++ GTG+ +E + M+ R+R
Sbjct: 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 37.6 bits (87), Expect = 0.003
Identities = 11/74 (14%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFA 184
E+ + +Q+ ++ +IG G+ S++ L + A+E++ +G +R+
Sbjct: 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLK 85
Query: 185 S--IDQLKVLQEDF 196
+ +++
Sbjct: 86 KFVARNVTLVEAFA 99
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 38.1 bits (88), Expect = 0.004
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA 184
A ++ G +V + G S L + G ++ I+ D + A
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 37.5 bits (87), Expect = 0.004
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
+L A + +EIG GTG L + +E + M + R+R
Sbjct: 37 SELQAVKCLLPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR 84
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 36.7 bits (85), Expect = 0.006
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
+ A + G+ +LE+G GTG L + +E + M+ + R R
Sbjct: 27 ERALKGLLPPGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRAPEAT 80
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 37.1 bits (86), Expect = 0.006
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
++ VL++G GTG + L G V+ ++ + M+ + RE+
Sbjct: 47 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK 95
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 37.1 bits (86), Expect = 0.006
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 32/156 (20%)
Query: 133 LAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS--- 185
LA + + ++++ G G + LL + A ++ +E + + + + A
Sbjct: 40 LAKFSYLPIRKGKIIDLCSGNGIIP--LLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL 97
Query: 186 IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ--------- 236
DQ+++++ D K V N P+ + D +
Sbjct: 98 EDQIEIIEYDLKK----------ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIA 147
Query: 237 ----LLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268
+ + D LL++ V R +
Sbjct: 148 RHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLD 183
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 37.0 bits (86), Expect = 0.006
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDF 196
D L++ GTG+LT L A++ Q M+ +F S + ++ +D
Sbjct: 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI 93
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 36.8 bits (85), Expect = 0.008
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQ 188
L+ + E ++ +IG GTG T VL V ++ + + ++
Sbjct: 38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNR 97
Query: 189 LKVLQEDF 196
+ +
Sbjct: 98 VTGIVGSM 105
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 36.4 bits (84), Expect = 0.008
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDF 196
+++ VL++ G G + +L + G V+ ++ + M+ RE S ++ + D
Sbjct: 36 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA 94
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 36.9 bits (85), Expect = 0.008
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFASIDQ 188
++ E +++++G G G+ T + L ++ + M+
Sbjct: 27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD 86
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 36.8 bits (85), Expect = 0.008
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVG 177
G + L I QL + VL+IG G G T+ +A T ++ + +
Sbjct: 65 GHYQPLRDAIVAQLRERLDDKATA-VLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIK 123
Query: 178 LVRERFASI 186
+R+ +
Sbjct: 124 AAAKRYPQV 132
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 36.4 bits (85), Expect = 0.009
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
+ EG L++G G+G LT + V+ I+ + +V D
Sbjct: 70 LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPT 128
Query: 191 VLQEDFVKCHI 201
+L V+ +
Sbjct: 129 LLSSGRVQLVV 139
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 36.4 bits (84), Expect = 0.009
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
+ +L++ GTG L ++ TV +E M+ + R R
Sbjct: 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAV 96
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QL 189
+++ A +E VL++ GTG T L G V+ ++ + M+ + R + + ++
Sbjct: 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKI 90
Query: 190 KVLQED 195
+ LQ D
Sbjct: 91 EFLQGD 96
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 35.8 bits (82), Expect = 0.011
Identities = 24/174 (13%), Positives = 46/174 (26%), Gaps = 29/174 (16%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFV 197
G V++ G G G L GA V A + D + + ++
Sbjct: 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVN---------- 98
Query: 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN-ISTDVIKQLLPMGDIFSEVVLLLQEETA 256
+S + + + N PF + + + S + + A
Sbjct: 99 ---FMVADVSEISGK-----YDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKA 150
Query: 257 LRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRT-NFFPQPKVDAAVVTFKLK 309
+ V + E + VPR + V F ++
Sbjct: 151 RDFLRREFSA------RGDV--FREEKVYITVPRIYRHHSYDRARIEAVIFGVR 196
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 35.6 bits (83), Expect = 0.013
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
++ G VLEIG G G V + V++IE+ + D +
Sbjct: 72 LLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVI 131
Query: 191 VLQED 195
V+ D
Sbjct: 132 VIVGD 136
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 35.7 bits (82), Expect = 0.014
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA 184
V+EGD V++ G G+ T L + V + + ++
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLT 68
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 35.7 bits (82), Expect = 0.014
Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ 188
+ A A + GD ++E G G+G+LT L N V++ E + L E
Sbjct: 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK---- 139
Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVIKQLLPMGDIFSE 246
+D V ++ + E V+ ++ P + K L P G
Sbjct: 140 -WAGFDDRVTIKLKDIYEGIEEEN-----VDHVILDLPQPERVVEHAAKALKPGGFF--- 190
Query: 247 VVLLLQEETALRLVEPSLRTSEYRPINI 274
V +RL E LR + +
Sbjct: 191 VAYTPCSNQVMRLHE-KLREFKDYFMKP 217
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 36.2 bits (83), Expect = 0.015
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 24/115 (20%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT---VLAIEKD 172
+SLG+ E+ D + + A G VLE G A T + +E D
Sbjct: 15 PRSLGRVET-PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEID 73
Query: 173 QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
+ L + + DF + F ++ N P+
Sbjct: 74 PKALDL-------PPWAEGILADF-------------LLWEPGEAFDLILGNPPY 108
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 35.8 bits (82), Expect = 0.015
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ 188
+A V+EGD +++ G G+G++ VL A V A EK + L
Sbjct: 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT---- 158
Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL---------LP 239
K + V +R + F+ + + F V P+N + L P
Sbjct: 159 -KWGLIERVTIKVR-DISEGFDEKDVDALFLDVPD--PWNYIDKCWEALKGGGRFATVCP 214
Query: 240 MGDIFSEVVLLLQEE--TALRLVEPSLRTSEYRP 271
+ E + LQE + + E R + P
Sbjct: 215 TTNQVQETLKKLQELPFIRIEVWESLFRPYKPVP 248
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 35.2 bits (81), Expect = 0.021
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI---DQ 188
++ + + + +IG GTG T L + I+ + + E D+
Sbjct: 38 VSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADR 97
Query: 189 LKVLQEDF 196
+K +
Sbjct: 98 VKGITGSM 105
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 35.4 bits (81), Expect = 0.022
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
L VL++ GTG + +L+ G +V +++ M+ + + +
Sbjct: 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKE-RWNRRKE 105
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
+ +V L+L + + GF V+
Sbjct: 106 PAFDKWVIEEAN--WLTLDKDVPAGDGFDAVI 135
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 35.5 bits (81), Expect = 0.022
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 12/148 (8%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID 187
+ + + + GD VLE G G+G ++ L A V++ E + L ++ +
Sbjct: 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 154
Query: 188 QLKVLQE-----DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGD 242
L D V + + + + + + P L G
Sbjct: 155 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 214
Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYR 270
VV + Q + L++ +RT E
Sbjct: 215 CAVYVVNITQ---VIELLD-GIRTCELA 238
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 34.8 bits (80), Expect = 0.026
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRER 182
+ + + G ++IG G G+L+ L + ++ A++ +HM + +
Sbjct: 34 ENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKN 85
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 34.9 bits (81), Expect = 0.028
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVL--------LNAGATVLAIEKDQHMVGLVRERFAS 185
++ G +L++G G+G LT ++A ++ IE +V + +
Sbjct: 77 YLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT 136
Query: 186 IDQLKVLQEDFVKCH 200
D +L +
Sbjct: 137 -DDRSMLDSGQLLIV 150
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 35.0 bits (80), Expect = 0.030
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 15/83 (18%)
Query: 118 SLGQHYMLNS------EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLA 168
+LG + +A A V+ G+ +LEIG G G L+ VL + + V
Sbjct: 14 ALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTG 73
Query: 169 I------EKDQHMVGLVRERFAS 185
I +G +
Sbjct: 74 IDIASPDYGAPLTLGQAWNHLLA 96
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 34.8 bits (80), Expect = 0.033
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI--- 186
D++ A V+ GD VL++G G G L V I + V R +
Sbjct: 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA 110
Query: 187 DQLKVLQEDF 196
+++ D
Sbjct: 111 NRVTFSYADA 120
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 34.3 bits (79), Expect = 0.048
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
V+ G + +IG GTG+ T +LL V ++ + M+ + +E+
Sbjct: 29 EQVEPGKRIADIGCGTGTAT-LLLADHYEVTGVDLSEEMLEIAQEK 73
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 34.0 bits (78), Expect = 0.056
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
+ ++ + +QE D +L+IG G+G ++ L + G +V I+ + + L
Sbjct: 16 SSLDLYPIIHNY--LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAAR 73
Query: 185 S--IDQLKVLQEDFVKC 199
S ++Q + +F
Sbjct: 74 SPGLNQKTGGKAEFKVE 90
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 34.4 bits (78), Expect = 0.057
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA----SIDQLK 190
+ ++EG V+++ G G L++ + + IE++ R +
Sbjct: 87 KSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVN 146
Query: 191 VLQEDFVK 198
+L DF +
Sbjct: 147 ILTGDFKE 154
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 33.7 bits (78), Expect = 0.064
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 136 AAAVQEGDIVLEIGPGTG-------SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
++ G +++G G+G NVL N + V+ +E+ + +V E D+
Sbjct: 75 INVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR-DK 133
Query: 189 LKVLQEDFVKCH 200
++L+ D K
Sbjct: 134 PELLKIDNFKII 145
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 33.6 bits (76), Expect = 0.070
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
Y + +A A V + G G + VL + G TV A E+ + L+ +
Sbjct: 64 QYRRTKGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSD 123
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 33.5 bits (76), Expect = 0.096
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 119 LGQHY-MLNSEI-NDQ----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEK 171
G H ML +I + + + + +VL++G GTG L+ AGA VL +++
Sbjct: 36 YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ 95
Query: 172 DQHM 175
+ +
Sbjct: 96 SEIL 99
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 33.4 bits (76), Expect = 0.10
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQL 189
+L VL++G G G GA VL I+ + M+ + + S +
Sbjct: 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS-PVV 92
Query: 190 KVLQED 195
Q+
Sbjct: 93 CYEQKA 98
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 33.3 bits (76), Expect = 0.10
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLV 179
+ +++ +L A+ + + + + +IG L + + +A E
Sbjct: 2 SLNEEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSA 61
Query: 180 RE 181
++
Sbjct: 62 QK 63
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 33.3 bits (76), Expect = 0.11
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI 186
+ +LA +Q L++G G G L+ G ++ + E
Sbjct: 69 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA 128
Query: 187 ---DQLKVLQEDF 196
D + V F
Sbjct: 129 GLADNITVKYGSF 141
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 33.1 bits (75), Expect = 0.11
Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ 188
+ ++ G +LE+G G+G++++ +L A T+ +E+D+ + + +
Sbjct: 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 160
Query: 189 LKVLQ 193
+ ++
Sbjct: 161 IGNVR 165
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 33.1 bits (75), Expect = 0.13
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 119 LGQHY-ML-----NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
G H ML + + + + IVL++G GTG L+ GA V+ ++
Sbjct: 10 YGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM 69
Query: 172 DQHM 175
+
Sbjct: 70 SSII 73
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.15
Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 33/98 (33%)
Query: 142 GDIVLEIGPGTGS----LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV 197
VL G G GS + LL GA V+ RF S Q +
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTS----------RF-SKQVTDYYQSIY- 523
Query: 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDV 233
+ + G +V +PFN DV
Sbjct: 524 -------------AKYGAKGSTLIV--VPFNQGSKQDV 546
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 32.7 bits (74), Expect = 0.17
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
G H +L E+ + + + + +VL++G GTG L AGA + +
Sbjct: 38 FGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC 97
Query: 173 QHMVGLVRE 181
+ +
Sbjct: 98 SSISDYAVK 106
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 32.7 bits (74), Expect = 0.17
Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEIN---DQLAAAAAVQEGDIVLEIGP 150
+S D + K + RK L E A EG VL++G
Sbjct: 33 LQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGC 92
Query: 151 GTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERF-----ASIDQLKVLQEDFVKCHIR 202
GTG + + V+ ++ + + + R+ F+K I
Sbjct: 93 GTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIE 152
Query: 203 SHMLSLFERRKSSSGFAKVVANIPFNISTD 232
+ + E SS V++N N+ST+
Sbjct: 153 NLATAEPEGVPDSS-VDIVISNCVCNLSTN 181
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 32.9 bits (74), Expect = 0.17
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
L ML+ + + + EG VL++G G+G L AGA + +
Sbjct: 35 LYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEA 94
Query: 173 QHMVGLVRERFA 184
M R
Sbjct: 95 TKMADHARALVK 106
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 32.7 bits (74), Expect = 0.17
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 119 LGQHY-MLNSEI-NDQ----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
L Q M+ + + + IVL++G G+G L+ AGA + +
Sbjct: 22 LSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 81
Query: 173 QHMVGLVRE 181
M
Sbjct: 82 STMAQHAEV 90
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold,
rossmann-fold, structural genomics, PSI-2, structure
initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Length = 261
Score = 32.6 bits (73), Expect = 0.18
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG----LVRERFASIDQLKVL 192
+ G V IG T L L GA+V + Q M + +R +ID L +
Sbjct: 41 ENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDIT 100
Query: 193 QEDFVKCH------IRSHMLSLFERRKSSSGFAKVVANIP 226
E + + +++ F ++ +++ +
Sbjct: 101 AEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLVG 140
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 32.2 bits (73), Expect = 0.19
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASI 186
++ L VL+ G G + G IE +
Sbjct: 10 QLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN 69
Query: 187 D-QLKVLQEDF 196
+ +L + + D
Sbjct: 70 NFKLNISKGDI 80
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 32.3 bits (73), Expect = 0.23
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ 188
+ + G VLE G G+G LT L A V + E H +
Sbjct: 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR---- 142
Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
Q + V+ H+ + E ++ P+ + L P + + +
Sbjct: 143 -AFWQVENVRFHLGKLEEAELEEAAYDGVALDLME--PWKVLEKAALALKPDRFLVAYL 198
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 32.4 bits (73), Expect = 0.23
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRER-----------FASI 186
+ GD VL++G G G AG ++ + + R R F +
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
D + + + S S +S NI
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNI 160
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 31.8 bits (72), Expect = 0.24
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
Y+ +E ND L + A +L + G G L + G V A+++ +
Sbjct: 8 QSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKA 67
Query: 180 RER-----------FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
++ +++ ++ + + L R++ + +
Sbjct: 68 KQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLK 122
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 32.4 bits (73), Expect = 0.26
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
L Q M+ + + + IVL++G G+G L+ AGA + +
Sbjct: 130 LSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA 189
Query: 173 QHMVGLVRE 181
M
Sbjct: 190 STMAQHAEV 198
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 31.4 bits (71), Expect = 0.32
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 145 VLEIGPGTGSLTNVLLNAGAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202
V+++G G G+L +LL + ++ + + +ER ++ ++
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-----RLRLPRNQWERLQ 87
Query: 203 SHMLSLFERRKSSSGFAKVVANIPFN 228
+L + K G+
Sbjct: 88 LIQGALTYQDKRFHGYDAATVIEVIE 113
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 31.7 bits (71), Expect = 0.34
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID 187
Q+ + G VLE G G+G+LT LL A V++ E+ R +
Sbjct: 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 148
Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
+ R + L + + V ++
Sbjct: 149 GQ-------PPDNWRLVVSDLADSELPDGSVDRAVLDMLA 181
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 31.3 bits (71), Expect = 0.41
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFA 184
L A G ++++G G G GA+ VL ++ + M+ R
Sbjct: 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP 87
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 31.0 bits (70), Expect = 0.47
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA 184
A+ V +G I+L++G L L+ G + +A E + +
Sbjct: 8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVE 60
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 30.6 bits (69), Expect = 0.64
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 124 MLNSEINDQLAA-AAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVR 180
++ +++ +L A V +G +L++G L LL G +A E
Sbjct: 3 AMDLQLSKRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL 62
Query: 181 ---ERFASIDQLKVLQED 195
++ V +
Sbjct: 63 KNVSEHGLTSKIDVRLAN 80
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 30.4 bits (68), Expect = 0.72
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRE 181
EG +V ++G GTG L+ L GA V+ +E D+ V ++ E
Sbjct: 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE 90
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 30.3 bits (68), Expect = 0.76
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202
V+++G G G+L ++LL + + ++ ++ ++R D+L +Q + I
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQ----RKRIS 87
Query: 203 SHMLSLFERRKSSSGFAKVVAN 224
SL R K SG+
Sbjct: 88 LFQSSLVYRDKRFSGYDAATVI 109
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 29.8 bits (67), Expect = 0.93
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
A E IVL++G TG +T L TV++ + + + R
Sbjct: 16 ALEREGLEMKIVLDLGTSTGVIT-EQLRKRNTVVSTDLNIRALESHRG 62
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 30.3 bits (67), Expect = 0.99
Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER-------FASIDQLKV 191
G VL++G G LT + + ++ ++ D ++ R+ + +
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTL 105
Query: 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLL 251
+ + + + +S ++ P + P +F +L
Sbjct: 106 EGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVL 165
Query: 252 QEETALRLVEPSL 264
+ + P
Sbjct: 166 DRDDLVEAQTPEY 178
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 30.2 bits (68), Expect = 1.3
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 24/142 (16%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV---GLVRERFASIDQLKVLQEDFVKCHI 201
V+E G GTG L LL A A + + +V G +R R Q + L
Sbjct: 141 VMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRAR-----QRETLGAQAPGLAA 195
Query: 202 RSHMLSLFERRKSSSGFAKVVAN-----IPFNISTDVIKQLLPMGDIFSEVVLLLQEETA 256
R L + G VV N +P ++ + + E + + + A
Sbjct: 196 RVRWLDALP--ERFEGV--VVGNEVLDAMP-------VRLVAKQARGWCERGVSIDDAGA 244
Query: 257 LRLVEPSLRTSEYRPINIFVNF 278
+ +E ++
Sbjct: 245 FVFADRPFARAEEAARLAGIDA 266
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 28.0 bits (63), Expect = 1.3
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 133 LAAAAAVQEGDIVLEI-GPGTGSLT-----NVLLNAGATV-LAIEKDQHM 175
AA A V+ GD+VL I G +T N + ++ + ++++ +
Sbjct: 39 KAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESDL 88
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 29.9 bits (67), Expect = 1.4
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 145 VLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID--QLKVLQED 195
+ +G G ++ + + +E D + L RE F ++K+ +D
Sbjct: 93 ITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDD 147
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 30.2 bits (67), Expect = 1.4
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 145 VLEIGPGTGSLTNVLLNAGAT---VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
+++ G G+GSL + LL+ + ++ ++ + + +K+ +E
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML----HVKLNKEACNVKSA 780
Query: 202 RSHMLSLFERRKSSSGFAKVVAN 224
+ S+ E
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCL 803
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 29.4 bits (67), Expect = 1.8
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 132 QLAA-AAAVQEGDIVLEI--GPGTGSLTNVL-LNAGATVLAIEKDQHMVGLVRE 181
Q A Q G+ +L++ PG G T++L + A V+A++ D+ + V +
Sbjct: 236 QGCMTWLAPQNGEHILDLCAAPG-GKTTHILEVAPEAQVVAVDIDEQRLSRVYD 288
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 9/28 (32%)
Query: 253 EETALRLVEPSLRTSEYRP-------IN 273
E+ AL+ ++ SL+ Y I
Sbjct: 18 EKQALKKLQASLKL--YADDSAPALAIK 43
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.9 bits (64), Expect = 2.5
Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 26/165 (15%)
Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFAS------I 186
Q D+VL++G G G + N V+A++ D+ + + + A+ +
Sbjct: 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL 80
Query: 187 DQLKVLQED---FVKCHIRSHMLSLF-------ERRKSSSGFAKVVANI-----PFNIST 231
L L + L SS + +A + F ++
Sbjct: 81 PNLLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140
Query: 232 DVI---KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273
++ + +G+ E A R E + ++ R +
Sbjct: 141 NLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLE 185
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 28.8 bits (65), Expect = 2.6
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 145 VLEIGPGTG--SLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
+LEIG G S+ ++ V IE+++ M+ ++ A
Sbjct: 75 ILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLA 116
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure
INI northeast structural genomics consortium, unknown
function; 2.10A {Rhodopseudomonas palustris} SCOP:
c.66.1.52
Length = 387
Score = 28.9 bits (65), Expect = 3.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 145 VLEIGPGTGSLTNVLLNA 162
++EIGPG G++ L A
Sbjct: 84 LIEIGPGRGTMMADALRA 101
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 28.4 bits (64), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAI 169
G L+IG TG T+V+L GA V A+
Sbjct: 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYAL 66
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 28.1 bits (62), Expect = 4.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
+ + D+V++ G G T G V+AI+ D + L R
Sbjct: 74 SQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARN 118
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 28.1 bits (63), Expect = 4.0
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 145 VLEIGPGTG--SLTNVL-LNAGATVLAIEKDQHMVGLVRERFA 184
+ I P G L + L T+ I+ + + F
Sbjct: 60 AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.5 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 116 RKSLGQHYMLNSEINDQ-LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
++L + + ++ EIN Q +AAA A+ V+ GPGTG T V A +LA
Sbjct: 138 AQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV-----AKLLAALIQMA 192
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 28.0 bits (63), Expect = 4.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAI 169
E I ++IG TG T+V+L GA V A+
Sbjct: 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAV 114
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 26.5 bits (59), Expect = 5.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 133 LAAAAAVQEGDIVLEI-GPGTGSLT-----NVLLNAGATV-LAIEKDQ 173
AA A V GD VL I G GSLT N + G + L + +
Sbjct: 39 KAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAI 86
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 27.7 bits (61), Expect = 5.5
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQHMVGLVRERFAS 185
L L+ G G G +T +LL V ++ + + +
Sbjct: 71 LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE 124
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 26.2 bits (58), Expect = 6.4
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 131 DQLAAAAAVQEGDIVLEI-GPGTGSLT-----NVLLNAGATV-LAIEKDQH 174
AA A + GD++ I G T ++T N + + L + + +H
Sbjct: 37 GSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEH 87
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 27.5 bits (62), Expect = 6.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 145 VLEIGPGTG-SLTNVL--LNAGATVLAIEKDQHMVGLVRERFA 184
V+ G G G + ++ + V+ I+ D+ V R
Sbjct: 60 VVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH 102
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 27.5 bits (62), Expect = 7.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 126 NSEINDQLAA----AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
N+ +N ++ A VQ D VL++ G G+ T L A+V+ +E +V
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 26.1 bits (58), Expect = 7.7
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 133 LAAAAAVQEGDIVLEI-GPGTGSLT-----NVLLNAGATV-LAIEKDQ 173
A A ++ GDI++ I G + + + + + + L +++
Sbjct: 38 KAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT 85
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 27.6 bits (62), Expect = 7.7
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 132 QLAA-AAAVQEGDIVLEI--GPG--TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA-- 184
+A+ + G+ V+++ PG T L ++ N G + A + D+ + +++
Sbjct: 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKG-KIYAFDVDKMRMKRLKDFVKRM 307
Query: 185 SIDQLKVLQED 195
I +K L +D
Sbjct: 308 GIKIVKPLVKD 318
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 26.7 bits (60), Expect = 9.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200
T LA++ D V V E A+ L +QE F K H
Sbjct: 63 THLAVQCDGSEVLTV-EGLANKGVLHAVQEGFYKEH 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,568,237
Number of extensions: 330083
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 150
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)