Query 016716
Match_columns 384
No_of_seqs 258 out of 1603
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1947 IspE 4-diphosphocytidy 100.0 3.2E-54 7E-59 411.8 25.0 279 72-371 2-284 (289)
2 PRK14608 4-diphosphocytidyl-2- 100.0 1.3E-51 2.8E-56 400.2 25.9 278 70-368 3-287 (290)
3 PRK14610 4-diphosphocytidyl-2- 100.0 2.3E-51 4.9E-56 397.2 24.7 274 71-368 1-279 (283)
4 PRK14615 4-diphosphocytidyl-2- 100.0 6.9E-51 1.5E-55 396.2 25.3 266 73-344 6-285 (296)
5 PRK14612 4-diphosphocytidyl-2- 100.0 2.5E-50 5.3E-55 388.7 26.3 272 73-370 2-275 (276)
6 PRK14616 4-diphosphocytidyl-2- 100.0 2.3E-50 5E-55 391.0 25.7 266 71-344 1-271 (287)
7 PRK05905 hypothetical protein; 100.0 1.4E-50 3.1E-55 385.0 23.3 247 74-331 1-253 (258)
8 PRK00650 4-diphosphocytidyl-2- 100.0 8.5E-51 1.8E-55 391.5 21.4 251 75-343 2-254 (288)
9 PRK14613 4-diphosphocytidyl-2- 100.0 1.4E-49 3E-54 387.1 23.3 260 77-344 2-284 (297)
10 PRK14609 4-diphosphocytidyl-2- 100.0 4.2E-49 9E-54 378.8 23.9 252 74-334 1-253 (269)
11 PRK03188 4-diphosphocytidyl-2- 100.0 2.3E-48 4.9E-53 379.1 24.1 263 74-344 1-274 (300)
12 TIGR00154 ispE 4-diphosphocyti 100.0 1.1E-47 2.3E-52 373.4 25.1 259 75-340 3-268 (293)
13 PRK04181 4-diphosphocytidyl-2- 100.0 2.3E-48 5E-53 370.7 19.8 241 74-331 1-254 (257)
14 PRK14611 4-diphosphocytidyl-2- 100.0 1.1E-47 2.3E-52 370.2 24.4 249 75-333 3-254 (275)
15 PRK14614 4-diphosphocytidyl-2- 100.0 9E-48 2E-52 371.7 23.5 255 71-334 1-256 (280)
16 PRK00128 ipk 4-diphosphocytidy 100.0 1.8E-47 3.9E-52 370.2 24.2 264 74-343 3-269 (286)
17 PRK00343 ipk 4-diphosphocytidy 100.0 4.6E-47 9.9E-52 365.0 24.7 249 74-340 7-256 (271)
18 PRK02534 4-diphosphocytidyl-2- 100.0 1.2E-46 2.5E-51 369.1 25.8 267 71-343 1-287 (312)
19 PLN02451 homoserine kinase 100.0 4E-40 8.8E-45 329.2 24.6 257 72-343 52-338 (370)
20 PRK01212 homoserine kinase; Pr 100.0 6.1E-40 1.3E-44 319.7 23.2 255 71-342 1-275 (301)
21 COG0083 ThrB Homoserine kinase 100.0 3.5E-40 7.5E-45 317.0 21.1 245 71-334 1-263 (299)
22 PTZ00299 homoserine kinase; Pr 100.0 8.2E-39 1.8E-43 315.3 20.6 243 73-333 7-274 (336)
23 TIGR00191 thrB homoserine kina 100.0 7.8E-39 1.7E-43 312.4 19.8 247 74-335 1-268 (302)
24 PTZ00298 mevalonate kinase; Pr 100.0 1.8E-33 4E-38 277.6 16.3 258 74-342 11-305 (328)
25 PRK03926 mevalonate kinase; Pr 100.0 9.2E-32 2E-36 262.2 20.2 250 74-342 2-278 (302)
26 TIGR00144 beta_RFAP_syn beta-R 100.0 1.1E-29 2.5E-34 250.1 19.7 250 75-341 2-296 (324)
27 PRK05101 galactokinase; Provis 99.9 5.7E-26 1.2E-30 228.6 24.9 287 68-371 15-378 (382)
28 PRK01123 shikimate kinase; Pro 99.9 3.1E-26 6.7E-31 221.7 20.5 227 104-344 25-264 (282)
29 PRK03817 galactokinase; Provis 99.9 9E-26 1.9E-30 224.8 23.8 256 74-343 1-324 (351)
30 TIGR01920 Shik_kin_archae shik 99.9 3.1E-25 6.6E-30 212.5 18.3 221 104-344 19-252 (261)
31 TIGR00131 gal_kin galactokinas 99.9 3.3E-24 7.2E-29 216.2 24.3 282 71-370 15-381 (386)
32 COG1577 ERG12 Mevalonate kinas 99.9 3.2E-24 7E-29 208.3 20.3 245 75-333 2-281 (307)
33 TIGR00549 mevalon_kin mevalona 99.9 1.5E-24 3.3E-29 208.2 17.5 236 78-330 1-273 (273)
34 PRK05322 galactokinase; Provis 99.9 1.6E-23 3.5E-28 211.2 23.3 293 60-371 5-383 (387)
35 PRK00555 galactokinase; Provis 99.9 4.7E-23 1E-27 206.1 23.5 261 74-344 3-337 (363)
36 COG0153 GalK Galactokinase [Ca 99.9 9.5E-22 2E-26 193.5 22.1 275 54-344 5-364 (390)
37 TIGR01220 Pmev_kin_Gr_pos phos 99.9 5.8E-22 1.3E-26 198.0 20.1 259 75-344 2-343 (358)
38 COG1907 Predicted archaeal sug 99.9 2.4E-21 5.1E-26 183.1 17.7 245 74-337 2-279 (312)
39 PLN02521 galactokinase 99.9 1.2E-20 2.6E-25 195.0 20.9 185 55-248 29-251 (497)
40 PLN02677 mevalonate kinase 99.8 2.6E-20 5.6E-25 187.2 17.2 248 73-333 2-348 (387)
41 COG1685 Archaeal shikimate kin 99.8 1E-19 2.2E-24 170.5 15.5 231 104-354 25-269 (278)
42 PLN02865 galactokinase 99.8 1.3E-18 2.9E-23 176.4 21.9 276 58-344 12-391 (423)
43 PTZ00290 galactokinase; Provis 99.8 1.1E-17 2.4E-22 171.5 24.2 189 57-250 14-263 (468)
44 KOG1537 Homoserine kinase [Ami 99.8 2.7E-19 5.9E-24 166.4 7.8 257 73-342 4-326 (355)
45 PRK13412 fkp bifunctional fuco 99.8 1E-17 2.2E-22 182.6 21.3 260 74-344 610-949 (974)
46 TIGR01240 mevDPdecarb diphosph 99.8 5.1E-17 1.1E-21 158.9 21.4 236 101-342 29-299 (305)
47 COG2605 Predicted kinase relat 99.7 3.7E-16 8.1E-21 148.0 16.3 279 75-365 3-332 (333)
48 KOG1511 Mevalonate kinase MVK/ 99.6 2.7E-14 5.9E-19 138.2 20.3 256 74-342 5-355 (397)
49 COG4542 PduX Protein involved 99.6 1E-14 2.2E-19 135.7 15.6 232 73-333 13-264 (293)
50 TIGR01219 Pmev_kin_ERG8 phosph 99.4 2.6E-11 5.6E-16 124.1 18.7 176 76-260 2-293 (454)
51 COG3407 MVD1 Mevalonate pyroph 99.3 1.6E-10 3.4E-15 113.0 18.5 241 101-342 34-303 (329)
52 PF00288 GHMP_kinases_N: GHMP 99.2 1.9E-11 4.1E-16 93.0 4.3 49 158-206 1-49 (67)
53 PLN02407 diphosphomevalonate d 99.1 3.9E-09 8.4E-14 104.1 18.3 260 74-340 4-324 (343)
54 COG1829 Predicted archaeal kin 99.1 2.1E-09 4.5E-14 101.9 13.1 235 74-332 3-253 (283)
55 KOG0631 Galactokinase [Carbohy 98.7 1.9E-07 4E-12 94.7 11.5 138 65-208 31-197 (489)
56 KOG2833 Mevalonate pyrophospha 98.6 3.4E-06 7.4E-11 81.4 18.6 158 123-282 61-250 (395)
57 PF08544 GHMP_kinases_C: GHMP 98.3 2.2E-07 4.8E-12 73.1 1.4 71 271-344 1-80 (85)
58 PF10509 GalKase_gal_bdg: Gala 96.4 0.0029 6.2E-08 45.8 3.0 44 68-116 8-51 (52)
59 COG3890 ERG8 Phosphomevalonate 93.9 1.5 3.3E-05 42.4 13.3 93 168-261 107-216 (337)
60 KOG4644 L-fucose kinase [Carbo 92.6 0.28 6.1E-06 50.9 6.5 44 155-198 690-733 (948)
61 KOG0631 Galactokinase [Carbohy 81.4 1.8 3.9E-05 44.9 4.2 68 296-367 408-478 (489)
62 TIGR00162 conserved hypothetic 45.9 79 0.0017 28.9 7.0 57 144-207 102-159 (188)
63 COG5405 HslV ATP-dependent pro 44.0 36 0.00077 30.6 4.2 43 169-213 124-166 (178)
64 PF00382 TFIIB: Transcription 27.8 86 0.0019 23.4 3.6 31 173-203 35-65 (71)
65 PF11608 Limkain-b1: Limkain b 24.3 33 0.00071 27.6 0.6 33 320-352 35-68 (90)
66 KOG4519 Phosphomevalonate kina 23.4 66 0.0014 32.3 2.6 22 168-189 152-173 (459)
67 COG1938 Archaeal enzymes of AT 22.2 1E+02 0.0023 29.4 3.7 32 176-207 187-218 (244)
68 TIGR00161 conserved hypothetic 21.7 1.1E+02 0.0024 28.9 3.8 34 174-207 182-215 (238)
69 PRK12449 acyl carrier protein; 20.9 2.7E+02 0.0058 21.0 5.3 60 139-201 6-65 (80)
No 1
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=100.00 E-value=3.2e-54 Score=411.80 Aligned_cols=279 Identities=35% Similarity=0.533 Sum_probs=228.9
Q ss_pred eeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEee-CCCCCCCCChHHHHHHHHHHHH
Q 016716 72 SRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTN-VPGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 72 ~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~-~~~lp~d~~Nli~ka~~~~~~~ 150 (384)
+++++.|||||||||+|+|+|+||||.|.|+|+.||++|+++|+..+..+ +.+.++ ..++|.|+ |+++||++.+++.
T Consensus 2 ~~~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~~~-~~~~~~~~~~lp~~~-NLv~rAa~ll~~~ 79 (289)
T COG1947 2 MSTKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDDDG-FIVLGTFADGLPTDE-NLVYRAAELLRKR 79 (289)
T ss_pred cceEeeccceEEEEEEecccCCCCceeeEEEEEEeccCCEEEEEECCCCC-ceEecCCCCCCCCcc-hHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999887442 444433 45788876 9999999999999
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI 230 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l 230 (384)
++...|++|+|+|+||+|+|||||||||+|+|.++|++|+.+++.+||.+++.++|+|||||++||+++++|+||+++++
T Consensus 80 ~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPffl~g~tA~a~G~GE~l~~~ 159 (289)
T COG1947 80 TGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPFFLSGGTAFAEGRGEKLEPL 159 (289)
T ss_pred hCCCCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCcCeeeeCCceEEEEccceeeEC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHHH
Q 016716 231 PPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRII 308 (384)
Q Consensus 231 ~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l~ 308 (384)
+. .| ..+++++.|++.+||+++|+. +...........+..++...++.. ....||||++....+|++++....+.
T Consensus 160 ~~-~~-~~~~vl~~P~v~vsT~~vy~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NdLe~~~~~~~p~v~~~~~~l~ 236 (289)
T COG1947 160 ED-PP-EKWYVLAKPGVGVSTKEVYKD-PELTRNTPKSEPLIAALSLENLKQIAPFLINDLEKVALRLYPEVKEALSELL 236 (289)
T ss_pred CC-CC-CceEEEEeCCCCCChHHHHcC-cCcccccCCchhhhHHHhhhhHhhhccccccchHHHHHHhChHHHHHHHHHh
Confidence 74 23 578999999999999999993 332222222222333333333322 22449999999999999999888888
Q ss_pred HcCCCCCCceeeeccccceeEeccCC-CccchhhcccccchhhhhhHHHhhcCCceEEeccccC
Q 016716 309 AAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTN 371 (384)
Q Consensus 309 ~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~~ 371 (384)
+.|+ .++.|||||||||++++++ .+++++ +.+....+.|++......
T Consensus 237 ~~ga---~~~~mSGSGstvF~l~~~~~~a~~~~-------------~~l~~~~~~~~~~~~~~~ 284 (289)
T COG1947 237 EYGA---LPARMSGSGSTVFALFDTEKEAQRVA-------------EQLPKGVCGWVVKGVRLS 284 (289)
T ss_pred hccc---ccceEecCCCcEEEEeCChHHHHHHH-------------HHhhcccCCcEEEEeecc
Confidence 8887 6899999999999999874 444443 333334556887765443
No 2
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.3e-51 Score=400.22 Aligned_cols=278 Identities=27% Similarity=0.420 Sum_probs=225.4
Q ss_pred CceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCC-CCCCCCChHHHHHHHHHH
Q 016716 70 PLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP-GIPVDDSNLIIKALNLYR 148 (384)
Q Consensus 70 ~~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~-~lp~d~~Nli~ka~~~~~ 148 (384)
.|+.++++|||||||||+|+|+|.||||.|.|+|++|++||+|+|++.+.. .+.+..... .+|.+++|++++|++.++
T Consensus 3 ~~~~~~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~-~i~~~~~~~~~ip~~~~Nlv~ka~~~~~ 81 (290)
T PRK14608 3 AMPSLTEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPAEAL-SLTVSGPFAAGLGDGDDNLVLRAARALR 81 (290)
T ss_pred CCceEEEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEECCCC-cEEEeCCCccCCCCCCCcHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999976542 244443322 467778999999999999
Q ss_pred HHcC-CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCcee
Q 016716 149 KKTE-SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVV 227 (384)
Q Consensus 149 ~~~g-~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l 227 (384)
++++ ...+++|+|+|+||+|+|||||||+++|++.++|++++.+++++||.++|.++|+|+|+|+.||++++.|+|+.+
T Consensus 82 ~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~dv~~~l~gg~~~~~g~g~~~ 161 (290)
T PRK14608 82 ARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGADVPVCLDSRPLIMRGIGEEL 161 (290)
T ss_pred HHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcCCeEEEEecCCEe
Confidence 9987 567999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhC-CCch--HHHhccccccccccchHHHHHH
Q 016716 228 QDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRN-GLSQ--DVCINDLEAPAFQVLPSLKRLK 304 (384)
Q Consensus 228 ~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~-d~~~--~~~~NdLe~~~~~~~p~l~~l~ 304 (384)
.+++. + +++++++++|++.++|+++|+.++... . .+....+..+... .+.. ....||||+++..++|++.+++
T Consensus 162 ~~l~~-~-~~~~~vv~~p~~~~sT~~~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~ndle~~~~~l~p~l~~i~ 237 (290)
T PRK14608 162 TPLPG-L-PSLPAVLVNPGVPVATPDVFRALGLRD-G-PPLPGAPDPLASADALLAALAATRNDLEPPALALAPVIGEVL 237 (290)
T ss_pred EECCC-C-CCcEEEEECCCCCcChHHHHHhhcccc-C-CcchhhhhhhhhhhhHHHHHHhccCccHHHHHHcCcHHHHHH
Confidence 87753 2 367899999999999999999887431 1 1111111111110 1111 1257999999999999999999
Q ss_pred HHHHHc-CCCCCCceeeeccccceeEeccCC-CccchhhcccccchhhhhhHHHhhcCCceEEecc
Q 016716 305 QRIIAA-GRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDNEYEDVFLSEARFITREVNQWYRESA 368 (384)
Q Consensus 305 ~~l~~~-Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~ 368 (384)
+.+.++ |+ +++.|||||||||++++++ .++++. ..+++....||+...
T Consensus 238 ~~~~~~~Ga---~~~~lSGSGstvf~l~~~~~~a~~~~-------------~~l~~~~~~~~~~~~ 287 (290)
T PRK14608 238 AALRAQPGA---LLARMSGSGATCFALFADEAAAEAAA-------------AAIAAAHPGWWVKAT 287 (290)
T ss_pred HHHHhcCCC---CeeEEeccccCeEEEeCCHHHHHHHH-------------HHhHhhCCCeEEEeE
Confidence 999999 98 8999999999999999863 344433 333334456887653
No 3
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.3e-51 Score=397.21 Aligned_cols=274 Identities=24% Similarity=0.379 Sum_probs=216.2
Q ss_pred ceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHH
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~ 150 (384)
|..++++|||||||||+|+|+|.||||.|.|+|+++++||++++++.+....+.++.. ..+ .+++|++++|++.++++
T Consensus 1 m~~~~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~-~~~-~~~~Nlv~kA~~~l~~~ 78 (283)
T PRK14610 1 MSKFLVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSKNRGVEFVNS-LKI-NRYNNTVQRAIGLLLRH 78 (283)
T ss_pred CCceEEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEECCCCCeEEEeCC-CCC-CCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999997653112344322 122 23589999999999999
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI 230 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l 230 (384)
++...|++|+|+|+||+++|||||||++||+++++|++++ ++.++|.++|.++|+|||||++||++++.|+||.++++
T Consensus 79 ~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lGaDvPffl~g~~a~~~G~Ge~l~~l 156 (283)
T PRK14610 79 SPVRTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVGSDVPACLDSKTLFVRGIGEDILLL 156 (283)
T ss_pred hCCCCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCcEEEECCeEEEEecccEEEEC
Confidence 9987899999999999999999999999999999999996 79999999999999999999999999999999999988
Q ss_pred CCCCCCCccEEEEcC-CCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHH
Q 016716 231 PPPIPLDVPMVLIKP-REACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRI 307 (384)
Q Consensus 231 ~~~~p~~~~ivIv~P-~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l 307 (384)
+...+ ..+++++.| ++.+||+++|+.++....... .... .+..+++.. ..+.||||++++..+|++.++++.+
T Consensus 157 ~~~~~-~~~~vl~~p~~~~~sT~~vy~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~Ndle~~~~~l~P~l~~~~~~l 232 (283)
T PRK14610 157 PDLSL-PTYVVLVAPKGKFLSTRKVFNKYECKAFSEP-IDNL--PVAQDDLLELLKEARNDLLETAISLVPEIEEILFVL 232 (283)
T ss_pred cccCC-CCeEEEEECCCCccChHHHHHhhcccccCCc-cccc--ccchhHHHHHHHHhcCchHHHHHHhChHHHHHHHHH
Confidence 53111 235888889 588999999998753111111 0000 111111111 2368999999999999999999988
Q ss_pred HHc-CCCCCCceeeeccccceeEeccCC-CccchhhcccccchhhhhhHHHhhcCCceEEecc
Q 016716 308 IAA-GRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDNEYEDVFLSEARFITREVNQWYRESA 368 (384)
Q Consensus 308 ~~~-Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~ 368 (384)
.+. |+ +++.|||||||||+++.++ .+++++ ..+++.++.||+..+
T Consensus 233 ~~~~ga---~~a~mSGSGsTvf~l~~~~~~a~~~~-------------~~l~~~~~~~~~~~~ 279 (283)
T PRK14610 233 ESLEGC---ILSRMSGSGATCFALFEEEEAAEAAA-------------RYLKMTRPEWWVFNT 279 (283)
T ss_pred HhcCCC---ceEEEeCcccceeEEeCCHHHHHHHH-------------HHhhhhCCceEEEEE
Confidence 764 66 7899999999999999863 333332 334445667998764
No 4
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=6.9e-51 Score=396.19 Aligned_cols=266 Identities=27% Similarity=0.416 Sum_probs=222.3
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccC-cccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHc
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVIS-LGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKT 151 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~-l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~ 151 (384)
.++++|||||||+|+|+|+|.||||.|.|+|++|+ ++|+|+|++.+.. .+.+.++...++. ++|+++++++.+++++
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~-~i~~~~~~~~~~~-~~Nlv~~a~~~~~~~~ 83 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAP-GITVTCTIPDLDP-ERNTVTRAYTAFAAAT 83 (296)
T ss_pred eEEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCC-CEEEEECCCCCCC-CccHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999998 7999999987643 2555554333443 5899999999999999
Q ss_pred CCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCC
Q 016716 152 ESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIP 231 (384)
Q Consensus 152 g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~ 231 (384)
+...+++|+|+|+||.++|||||||+++|++.++|++++.+++.++|.++|.++|+|+|||+.||++++.|+|+.+++++
T Consensus 84 ~~~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPffl~gg~a~~~G~Ge~~~~l~ 163 (296)
T PRK14615 84 GFRPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPFFLHNVPCRATGIGEILTPVA 163 (296)
T ss_pred CCCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCeeeccCCCEEEEeeEeEEEECC
Confidence 98789999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred CCCCCCccEEEEcCCCCcchHHHHhhhccccC-CCCC-------HHHHHHHHHhCCCc---h-HHHhccccccccccchH
Q 016716 232 PPIPLDVPMVLIKPREACPTAEVYKHLRLDQT-TKVD-------PLTLLEQISRNGLS---Q-DVCINDLEAPAFQVLPS 299 (384)
Q Consensus 232 ~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~-~~~d-------~~~ll~al~~~d~~---~-~~~~NdLe~~~~~~~p~ 299 (384)
.+. +++++|+++|++.++|+++|+.++.... +..+ ...++.....+++. . ..+.|++|++++.++|+
T Consensus 164 ~~~-~~~~~vl~~P~~~vsT~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ndle~~~~~l~P~ 242 (296)
T PRK14615 164 LGL-SGWTLVLVCPEVQVSTPWAYAAWDAANAKQIAASSRKQNRLRGCLTTEGVADRNPLSRGLWLHNSFEPVVFAAHPE 242 (296)
T ss_pred CCC-CCcEEEEECCCCCcChHHHHHHhhhhcccccccccccccchHHHHHhhhccchhhhhhhhhccccchhHhHHhChH
Confidence 443 3678999999999999999998864311 1111 01122333323321 1 23679999999999999
Q ss_pred HHHHHHHHHHcCCCCCCceeeeccccceeEeccC-CCccchhhccc
Q 016716 300 LKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSP-DPPQFIYDDNE 344 (384)
Q Consensus 300 l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~-~~a~~i~~~~~ 344 (384)
++++++.+.++|+ .|+.|||||||||+++++ +.++++.+.++
T Consensus 243 l~~~~~~~~~~GA---lga~mSGSGptvfaL~~~~~~a~~i~~~l~ 285 (296)
T PRK14615 243 LRRLKETLLRHGA---AAALMSGSGSSVFGLFRRRAQAEAAFEMLK 285 (296)
T ss_pred HHHHHHHHHhcCC---CEEEEeccCcceEEEeCCHHHHHHHHHHHh
Confidence 9999999999998 899999999999999986 45666666654
No 5
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.5e-50 Score=388.74 Aligned_cols=272 Identities=31% Similarity=0.502 Sum_probs=227.5
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcC
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTE 152 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g 152 (384)
.++++|||||||||+|+|+|.||||.|.|+++++++||+|++++.+. .+.+.+....+|.+++|++++|++.++++++
T Consensus 2 ~~~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~--~~~i~~~~~~~p~~~~Nli~ka~~~~~~~~g 79 (276)
T PRK14612 2 TMERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS--GLELRVLGADLPTDERNLVYRAARAYLDAAG 79 (276)
T ss_pred ceEEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC--cEEEEcCCCCCCCCCcccHHHHHHHHHHHhC
Confidence 47789999999999999999999999999999999999999997543 2445544345777789999999999999999
Q ss_pred CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCC
Q 016716 153 SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPP 232 (384)
Q Consensus 153 ~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~ 232 (384)
...+++|+|+|+||+|+|||||||+++|++.++|++++.+++ +.++|.++|+|+|+|++||++++.|+|+.+.+++
T Consensus 80 ~~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g~dv~~~~~GG~~~~~g~g~~~~~l~- 155 (276)
T PRK14612 80 QPGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLGADVPFFLLGGAAEARGVGERLTPLE- 155 (276)
T ss_pred CCCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhCCCcCeeeeCCeEEEEecCccceEcC-
Confidence 877999999999999999999999999999999999998764 7788889999999999999999999998887774
Q ss_pred CCCCCccEEEEcCCCCcchHHHHhhhccccCCC-CCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHHcC
Q 016716 233 PIPLDVPMVLIKPREACPTAEVYKHLRLDQTTK-VDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAG 311 (384)
Q Consensus 233 ~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~-~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~~G 311 (384)
.| +++++|++|++.++|+++|+.++....+. .....++.++.++|. ..+.|+||++++.++|++.++++.++++|
T Consensus 156 -~~-~~~~vv~~P~~~~sT~~a~~~l~~~~~~~~~~~~~l~~~l~~~d~--~~~~n~l~~~~~~~~p~l~~i~~~l~~~G 231 (276)
T PRK14612 156 -LP-PVPLVLVNPGVAVSARDAYRWLEPEDFGPELDVEAILAALARGEE--PPYWNSLEGPVFARHPELQEVLAALRAAG 231 (276)
T ss_pred -CC-CcEEEEECCCCCCCHHHHHHhhccccCCCcccHHHHHHHHHhccc--ccccCCcHHHHHHhChHHHHHHHHHHhCC
Confidence 23 68899999999999999999984222222 233456777877653 23578999999999999999999999999
Q ss_pred CCCCCceeeeccccceeEeccCC-CccchhhcccccchhhhhhHHHhhcCCceEEecccc
Q 016716 312 RGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDNEYEDVFLSEARFITREVNQWYRESAST 370 (384)
Q Consensus 312 a~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~ 370 (384)
+ +|+.|||||||||++++++ .++++. ..+++..+.||++++-+
T Consensus 232 a---~~~~lSGsGptvfal~~~~~~a~~~~-------------~~l~~~~~~~~~~~~~~ 275 (276)
T PRK14612 232 L---RGVLMSGSGSTCFGLAEDAAQAQRAA-------------AALRARHPAWWVRAAQT 275 (276)
T ss_pred C---CEEEEcCcchhhEEEeCCHHHHHHHH-------------HHhHhhCCceEEeeccc
Confidence 8 8999999999999999863 243333 33444556899988654
No 6
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.3e-50 Score=390.96 Aligned_cols=266 Identities=32% Similarity=0.478 Sum_probs=224.9
Q ss_pred ceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHH
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~ 150 (384)
|+.++++|||||||||+|+|+|.||||.|.++|++|++||+|++++.+ .+.+.+....+|.+++|+++++++.++++
T Consensus 1 ~~~~~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~---~~~i~~~~~~~p~~~~nl~~~a~~~~~~~ 77 (287)
T PRK14616 1 MQHISVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSD---TISMSCTNLDLPVDDSNLCIRAAKALQEY 77 (287)
T ss_pred CCceEEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECC---CEEEEeCCCCCCCCccHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999753 24555554567777899999999999999
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeec-CCeEEEccCCceeee
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFS-HGAAYCTGRGEVVQD 229 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~-GG~a~~~g~Ge~l~~ 229 (384)
++...+++|+|+|+||+++|||||||+++|++.++|+++|.+++.+||.++|.++|+|+|+|+. ||++++.|.|+.+++
T Consensus 78 ~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~~l~~gg~~~~~g~g~~~~~ 157 (287)
T PRK14616 78 AGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVPYFLEMKGLAYATGIGDELED 157 (287)
T ss_pred hCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEeccCCcEEEEEcCceeEE
Confidence 9887899999999999999999999999999999999999999999999999999999999985 889999999998877
Q ss_pred CCCCCCCCccEEEEcCCCCcchHHHHhhhccccC-CCCCHHHHHHHHHhC-CCch-HHHhccccccccccchHHHHHHHH
Q 016716 230 IPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQT-TKVDPLTLLEQISRN-GLSQ-DVCINDLEAPAFQVLPSLKRLKQR 306 (384)
Q Consensus 230 l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~-~~~d~~~ll~al~~~-d~~~-~~~~NdLe~~~~~~~p~l~~l~~~ 306 (384)
++... .+++|+++|++.++|+++|+.++.... .......++.++... ++.. ..+.||+|+++...+|++.++++.
T Consensus 158 ~~~~~--~~~~vvv~P~~~vsT~~a~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~nD~e~~~~~l~p~l~~v~~~ 235 (287)
T PRK14616 158 LQLTL--PFHIVTVFPEEHISTVWAYKNFYRRFERERPDLKTLVRRLCLDGDTSVLPAFENDFESAVFDHYPAVRKVKDD 235 (287)
T ss_pred CCcCC--CcEEEEECCCCCcCHHHHHHHhhhhcccCCchHHHHHHHHhcCCHHHHHHHhcCccHHHHHHhChHHHHHHHH
Confidence 65443 378999999999999999999875311 112233455555543 3222 346899999999999999999999
Q ss_pred HHHcCCCCCCceeeeccccceeEeccC-CCccchhhccc
Q 016716 307 IIAAGRGQYDAVFMSGSGSTIVGIGSP-DPPQFIYDDNE 344 (384)
Q Consensus 307 l~~~Ga~~~~ga~mSGSG~tvfal~~~-~~a~~i~~~~~ 344 (384)
+++.|+ +|+.|||||||||+++++ +.++++.++++
T Consensus 236 ~~~~Ga---lg~~lSGSGptv~al~~~~~~a~~i~~~l~ 271 (287)
T PRK14616 236 LLEAGS---FFASLSGSGSAVFGLFENEADAEAAAEMMR 271 (287)
T ss_pred HHhCCC---CeEEEecccccceEEeCCHHHHHHHHHHhH
Confidence 999998 899999999999999987 45555554443
No 7
>PRK05905 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=384.95 Aligned_cols=247 Identities=30% Similarity=0.411 Sum_probs=202.5
Q ss_pred EEEEcceeEEecccccCccCC-Cccccccccccc-CcccEEEEEeCCCC-CceEEEeeCCCCCCCCChHHH-HHHHHHHH
Q 016716 74 LTLFSPCKINAFLRITNKRED-GFHDLASLFHVI-SLGDTIKFSLSPLK-SRDRLSTNVPGIPVDDSNLII-KALNLYRK 149 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~d-Gyh~L~sl~~~I-~l~d~v~i~~~~~~-~~~~l~~~~~~lp~d~~Nli~-ka~~~~~~ 149 (384)
|+++|||||||||+|+|+|.| |||.|.|+|++| ++||+++|++.+.. ..+.+.++....+. ++|+++ ||++.+++
T Consensus 1 ~~~~apAKINL~L~I~gkR~DdGYHel~sv~~~i~~l~D~l~i~~~~~~~~~i~~~~~~~~~~~-~~nli~~ka~~~l~~ 79 (258)
T PRK05905 1 MKYKSYAKINLGLSIYKKCKKVTKHKLESIFILVENVYDDIEIEKIEKNIDDIHYFDETNEILV-YSRLILVKTLEWLRD 79 (258)
T ss_pred CcccccceEEeeeeecccCCCCCCcceeEEEEEccccccEEEEEECCCCCceEEEeCCCcCCCC-CcchHHHHHHHHHHH
Confidence 357899999999999999995 999999999999 99999999876432 12334333223333 378888 99999999
Q ss_pred HcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecC-CeEEEccCCceee
Q 016716 150 KTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSH-GAAYCTGRGEVVQ 228 (384)
Q Consensus 150 ~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~G-G~a~~~g~Ge~l~ 228 (384)
+++..++++|+++|+||+++|||||||||||++.++|++|+ ++.++|.++|.++|+|||||+.| |++++.|+||+++
T Consensus 80 ~~~~~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGADVPFfl~g~~~a~~~G~GE~l~ 157 (258)
T PRK05905 80 KYNIKNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGSDIPFFLSGYKTAYISDYGSQVE 157 (258)
T ss_pred HhCCCCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCcceEEeCCccEEEEeeCceeE
Confidence 99987899999999999999999999999999999999998 69999999999999999999999 9999999999999
Q ss_pred eCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCC-CCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHH
Q 016716 229 DIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTT-KVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRI 307 (384)
Q Consensus 229 ~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~-~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l 307 (384)
+++.+ ...+++++.|++.+||+++|+.++..... ......++..+.... ...+.||||++.+..+|++.++++.+
T Consensus 158 pl~~~--~~~~~vlv~P~~~vST~~vY~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~NdLe~~a~~~~P~i~~~~~~l 233 (258)
T PRK05905 158 DLIGQ--FKLTYKVIFMNVNVSTKKVFEKFDDNQHVIKNNFKTIIKNLKENI--VVNIHNDLQEPCFELYPNLLYKYNEL 233 (258)
T ss_pred ECCCC--CCceEEEECCCCCCCHHHHHHhhccccCCcccchHHHHHHHHHhh--hcccccccHHHHHHhChHHHHHHHHH
Confidence 98532 23569999999999999999987543111 111122333332211 12368999999999999999999999
Q ss_pred HHcCCCCCCceeeeccccceeEec
Q 016716 308 IAAGRGQYDAVFMSGSGSTIVGIG 331 (384)
Q Consensus 308 ~~~Ga~~~~ga~mSGSG~tvfal~ 331 (384)
.+.|+ .+.|||||||||++-
T Consensus 234 ~~~g~----~a~MSGSGstvF~l~ 253 (258)
T PRK05905 234 LNDGF----YTILSGAGSSFIVIK 253 (258)
T ss_pred HhCCC----CEEEeCcchhheEEe
Confidence 88763 678999999999984
No 8
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=8.5e-51 Score=391.54 Aligned_cols=251 Identities=32% Similarity=0.459 Sum_probs=209.1
Q ss_pred EEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCCC
Q 016716 75 TLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESD 154 (384)
Q Consensus 75 ~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~ 154 (384)
.++|||||||||+|+|||+||||.|.|+|++|+++|+++|++.+.. .+.+. +..++|. ++|++++|++.++++++..
T Consensus 2 ~~~apAKINL~L~V~gkR~DGYH~l~sl~~~i~l~D~l~i~~~~~~-~i~i~-~~~~~~~-~~Nlv~ra~~~l~~~~g~~ 78 (288)
T PRK00650 2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIAFGDQLSLSISSRD-SLQVI-NACHLET-PSNSIWKSVALFRRYTGIT 78 (288)
T ss_pred CccccceEEeeeccCCcCCCCCcceeEEEEEcCCCCEEEEEECCCC-cEEEe-CCCCCCc-cccHHHHHHHHHHHHhCCC
Confidence 4679999999999999999999999999999999999999976532 23343 2223443 6899999999999999987
Q ss_pred CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCCCC
Q 016716 155 NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPI 234 (384)
Q Consensus 155 ~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~~~ 234 (384)
.+++|+|+|+||+|+|||||||++||++.++|++++.++++++|.++|.++|+|+|||++||++++.|+||.+++++.
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPffl~~g~a~~~G~Ge~l~~~~~-- 156 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPFFFSTGSALGVGRGEKIIALEE-- 156 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchhhhcCceEEEEecCCEEEECcC--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988853
Q ss_pred CCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHHcCCCC
Q 016716 235 PLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQ 314 (384)
Q Consensus 235 p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~~Ga~~ 314 (384)
+.+++++++.|++.++|+++|+.++... .. ....+ ..+.||||++.+..+|++.++++.+.+.|+..
T Consensus 157 ~~~~~~vlv~P~~~vsT~~ay~~~~~~~---~~---~~~~~-------~~~~Ndle~~~~~~~p~i~~~~~~l~~~~~~~ 223 (288)
T PRK00650 157 SVSDRYVLYFSSEGVLTSRAFAYVQPSD---CS---SRKNL-------EYTQNDLEKPVFRLRLDLKEKKHWLESLWAEL 223 (288)
T ss_pred CCCceEEEEeCCCCCChHHHHHhhcccc---cc---hhhHh-------ccCCCchHHHHHHhChHHHHHHHHHHhccccC
Confidence 3357899999999999999998764321 11 11111 23589999999999999999999999876410
Q ss_pred CCceeeeccccceeEeccC-CCccchh-hcc
Q 016716 315 YDAVFMSGSGSTIVGIGSP-DPPQFIY-DDN 343 (384)
Q Consensus 315 ~~ga~mSGSG~tvfal~~~-~~a~~i~-~~~ 343 (384)
...+.|||||||||+++++ +.+++++ +.+
T Consensus 224 ~~~~~MSGSGst~F~l~~~~~~~~~~~~~~~ 254 (288)
T PRK00650 224 PVHVGLTGSGATLFVRYPEILEKDPSYAAQI 254 (288)
T ss_pred CCeEEEeCcccCEEEEeCCHHHHHHHHHHHh
Confidence 0137799999999999987 3455555 443
No 9
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.4e-49 Score=387.15 Aligned_cols=260 Identities=31% Similarity=0.436 Sum_probs=214.0
Q ss_pred EcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCC----------CC---CCCChHHHHH
Q 016716 77 FSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPG----------IP---VDDSNLIIKA 143 (384)
Q Consensus 77 ~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~----------lp---~d~~Nli~ka 143 (384)
+|||||||||+|+|+|+||||.|.|+|++|++||+++|++.+.. .+.+.++... +| .+++|+++||
T Consensus 2 ~apAKINL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nlv~ka 80 (297)
T PRK14613 2 ISPAKINLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPAPNG-VFELFSTNEIILEKRKLYDQVSERGDIKQNILYKT 80 (297)
T ss_pred CCCceEeeeecCCCcCCCCcceeeeEEEEeccCCEEEEEECCCC-cEEEEecccccccccccccccCCCCCcccchHHHH
Confidence 69999999999999999999999999999999999999875432 2455543221 32 3468999999
Q ss_pred HHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccC
Q 016716 144 LNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGR 223 (384)
Q Consensus 144 ~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~ 223 (384)
++.++++++...+++|+|+|+||+++|||||||++++++.++++.+++ ...++|.++|.++|+|+|||++|+++++.|+
T Consensus 81 ~~~~~~~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lGaDvP~~l~G~~a~~~g~ 159 (297)
T PRK14613 81 FIKARSLFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIGSDVPFFLGEGHAFVTGK 159 (297)
T ss_pred HHHHHHHhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhCCccchhhcCCeEEEecC
Confidence 999999998878999999999999999999999999999999886655 2347788899999999999999999999999
Q ss_pred CceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccC-CCCC------HHHHHHHHHhCCCch--HHHhcccccccc
Q 016716 224 GEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQT-TKVD------PLTLLEQISRNGLSQ--DVCINDLEAPAF 294 (384)
Q Consensus 224 Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~-~~~d------~~~ll~al~~~d~~~--~~~~NdLe~~~~ 294 (384)
|+.+.+++ .|..+ +++++|++.++|+++|+.++.... ...+ ...++.++..+++.. ..+.||||+++.
T Consensus 160 Ge~~~~l~--~~~~~-~vlv~P~~~vsT~~a~~~l~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~l~~~l~ndle~~~~ 236 (297)
T PRK14613 160 GEIMEEIE--VHKGQ-GILALTPQVMNTGEMYALLKKPLQESASQKNGNTLSEDLISSLKVGDWVSLQGRLENDFEPVAF 236 (297)
T ss_pred CcEEEEcC--CCCCe-EEEEECCCCcChHHHHHhcchhhccccccccccccHHHHHHHHHcCCHHHHHHHhcccchHHHH
Confidence 99988875 34444 578889999999999999875311 1111 224567777777643 457899999999
Q ss_pred ccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccC-CCccchhhccc
Q 016716 295 QVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSP-DPPQFIYDDNE 344 (384)
Q Consensus 295 ~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~-~~a~~i~~~~~ 344 (384)
.++|++.++++.+++.|+ +++.|||||||||+++++ +.++++.+.++
T Consensus 237 ~l~P~~~~i~~~~~~~Ga---~~~~mSGSGptvf~l~~~~~~a~~~~~~l~ 284 (297)
T PRK14613 237 QLHPELGVLKDKFLEFGS---SYCSLTGSGSSMYGLVQGLEIQEELLPRLR 284 (297)
T ss_pred HhCcHHHHHHHHHHHcCC---CEEEEEccccceEEEeCCHHHHHHHHHHHH
Confidence 999999999999999998 899999999999999987 45556655443
No 10
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=4.2e-49 Score=378.78 Aligned_cols=252 Identities=31% Similarity=0.499 Sum_probs=212.1
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCC-CChHHHHHHHHHHHHcC
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVD-DSNLIIKALNLYRKKTE 152 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d-~~Nli~ka~~~~~~~~g 152 (384)
|+++|||||||+|+|+|+|.||||.|.|+|++|+++|++++++.+.. .+.+.++...+|.+ ++|+++++++.++++++
T Consensus 1 ~~~~apaKiNL~L~v~~~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~-~~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~~ 79 (269)
T PRK14609 1 MITFPNAKINLGLNVVEKRPDGYHNLETVFYPIPLTDALEITVRSAT-KTSLTVSGIPIPGDPEDNLVVKAYNLLKKDFP 79 (269)
T ss_pred CCcCccccEEeeeccCCcCCCCcceeeEEEEECCCCcEEEEEEcCCC-cEEEEeCCCCCCCCccccHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999999999999999876543 35565555567743 58999999999999988
Q ss_pred CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCC
Q 016716 153 SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPP 232 (384)
Q Consensus 153 ~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~ 232 (384)
. .+++|+++|+||+++|||||||+++|++.++|++++.++++++|.++|.++|+|+|+|++||++++.|+|+.+.+++.
T Consensus 80 ~-~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvpffl~g~~a~~~G~Ge~l~~l~~ 158 (269)
T PRK14609 80 L-PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCAFFIRNKPVYATGIGDIFSPIDL 158 (269)
T ss_pred C-CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEccCCCEEEEEeCCeeEECCC
Confidence 5 589999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred CCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHHcCC
Q 016716 233 PIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGR 312 (384)
Q Consensus 233 ~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~~Ga 312 (384)
++ .++++|+++|++.++|+++|+.++.. .+......++..... ++ ...++|||++.....+|++.++++.+++.|+
T Consensus 159 ~~-~~~~~vlv~P~~~~sT~~a~~~l~~~-~~~~~~~~~~~~~~~-~~-~~~l~Ndle~~~~~~~p~l~~i~~~l~~~ga 234 (269)
T PRK14609 159 SL-SGYYIALVKPDIHVSTAEAYAGIKPH-KPETSLKEIIRQPVE-EW-KNKLVNDFEDSVFPKYPEIAEIKEKLYRSGA 234 (269)
T ss_pred CC-CCCEEEEECCCCCCChHHHHHhhhhc-CcchhhHHHHhhHHH-HH-HhhcCCChHHHHHHcChHHHHHHHHHHhCCC
Confidence 33 36789999999999999999988642 221111111111000 00 1246899999888889999999999999998
Q ss_pred CCCCceeeeccccceeEeccCC
Q 016716 313 GQYDAVFMSGSGSTIVGIGSPD 334 (384)
Q Consensus 313 ~~~~ga~mSGSG~tvfal~~~~ 334 (384)
+++.|||||||||++++++
T Consensus 235 ---~~~~mSGSG~tvf~l~~~~ 253 (269)
T PRK14609 235 ---LYAAMSGSGSSVFGIFKKP 253 (269)
T ss_pred ---CeEEEeCccceeEEEECCh
Confidence 8999999999999999863
No 11
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.3e-48 Score=379.10 Aligned_cols=263 Identities=30% Similarity=0.424 Sum_probs=223.7
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---CCCCCCCChHHHHHHHHHHHH
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---PGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---~~lp~d~~Nli~ka~~~~~~~ 150 (384)
++++|||||||||+|+|||.||||.|.|+|++|++||+|+|++.+. ..+.... .++|.+++|+++++++.++++
T Consensus 1 ~~~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~---~~i~~~~~~~~~~~~~~~nl~~~~~~~~~~~ 77 (300)
T PRK03188 1 VTVRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADV---LSVEVSGEGADQVPTDESNLAWRAAELLAEH 77 (300)
T ss_pred CeEeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCC---cEEEEecCCccCCCCCCccHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999998642 3333322 246777899999999999999
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI 230 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l 230 (384)
++..++++|+|+|+||+++|||||||+++|+++|+++++|.++++++|+++|.++|+|+++|+.||++++.+.|+.+.++
T Consensus 78 ~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv~~~~~GG~~~~~~~g~~~~~~ 157 (300)
T PRK03188 78 VGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDVPFALLGGTALGTGRGEQLAPV 157 (300)
T ss_pred hCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcCCeEEEEecCCEEEEC
Confidence 99878999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCCCCCCccEEEEcCCCCcchHHHHhhhccccCC----C-CCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHH
Q 016716 231 PPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTT----K-VDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRL 303 (384)
Q Consensus 231 ~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~----~-~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l 303 (384)
..+ .+++++++.|+..++|+++|+.++..... . .....++.++.++|+.. ..+.|++|+++...+|+++++
T Consensus 158 ~~~--~~~~~~lv~p~~~~sT~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~n~le~~~~~~~p~l~~l 235 (300)
T PRK03188 158 LAR--GTFHWVLAFADGGLSTPAVFRELDRLREAGDPPRLGEPDPLLAALRAGDPAQLAPLLGNDLQAAALSLRPSLRRT 235 (300)
T ss_pred CCC--CCcEEEEEeCCCCCCHHHHHHhchhhhccccccccccHHHHHHHHHcCCHHHHHHHhhCcCHHHHHHhCchHHHH
Confidence 432 35677787899999999999988753211 1 11345778899888754 567899999988889999999
Q ss_pred HHHHHHcCCCCCCceeeeccccceeEeccC-CCccchhhccc
Q 016716 304 KQRIIAAGRGQYDAVFMSGSGSTIVGIGSP-DPPQFIYDDNE 344 (384)
Q Consensus 304 ~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~-~~a~~i~~~~~ 344 (384)
++.+++.|+ +|++|||||||+|+++++ +.++++.+.++
T Consensus 236 ~~~~~~~Ga---lga~lSGsG~tv~~l~~~~~~~~~~~~~l~ 274 (300)
T PRK03188 236 LRAGEEAGA---LAGIVSGSGPTCAFLCADADSAVDVAAALS 274 (300)
T ss_pred HHHHHHCCC---CEEEEEccccceEEEeCCHHHHHHHHHHHH
Confidence 999999998 899999999999999986 34555554443
No 12
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=100.00 E-value=1.1e-47 Score=373.36 Aligned_cols=259 Identities=33% Similarity=0.478 Sum_probs=218.5
Q ss_pred EEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcC--
Q 016716 75 TLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTE-- 152 (384)
Q Consensus 75 ~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g-- 152 (384)
.++|||||||+|+|+|+|.||||.|.|+|++|+++|+|++++.++. .+.+.+...++|.+ +|+++++++.++++++
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~-~i~~~~~~~~~~~~-~nlv~~a~~~l~~~~~~~ 80 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDD-DIRLLKGDFDVPLE-ENLIYRAAQLLKNFANSK 80 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCC-cEEEeeCCCCCCCC-CcHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999986643 24554443345654 4999999999999887
Q ss_pred --CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716 153 --SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI 230 (384)
Q Consensus 153 --~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l 230 (384)
...+++|+|+|+||.|+|||||||+++|++.|++++++.+++.++|+++|.++|+|+|+|+.||++++.|+|+.+.++
T Consensus 81 ~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~gg~~~~~g~ge~~~~l 160 (293)
T TIGR00154 81 IKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVSGHAAFATGVGEIITPF 160 (293)
T ss_pred ccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEECCeEEEEecCcEEEEC
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHHH
Q 016716 231 PPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRII 308 (384)
Q Consensus 231 ~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l~ 308 (384)
+. +.++++++++|++.++|+++|+.++.......+...++.++..+++.. ..++||||+..+..+|+++++++.++
T Consensus 161 ~~--~~~~~~vl~~p~~~~sT~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ndle~~~~~~~p~l~~i~~~l~ 238 (293)
T TIGR00154 161 ED--PPEKWVVIAKPHVSISTPVVYQAYKLPRNTPKRAKEWLKKISLECLQLLDSNGLNDLEKVALKRHTEVAQALNWLL 238 (293)
T ss_pred CC--CCCcEEEEEcCCCCcChHHHHHhhhhcccCcchhHHHHHHHhhccHHHHhhhhcCccHHHHHhcCHHHHHHHHHHH
Confidence 53 236789999999999999999988622222223344666665544322 34789999999889999999999999
Q ss_pred HcCCCCCCceeeeccccceeEeccCC-Cccchh
Q 016716 309 AAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIY 340 (384)
Q Consensus 309 ~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~ 340 (384)
++|+ .++.|||||||||++++++ .++++.
T Consensus 239 ~~Ga---~~a~mSGSG~tvf~l~~~~~~a~~~~ 268 (293)
T TIGR00154 239 EYGL---APERLSGSGACVFALFDMESEAEQVL 268 (293)
T ss_pred hCCC---CeEEEeccccceEEEeCCHHHHHHHH
Confidence 9998 8999999999999999864 344444
No 13
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=2.3e-48 Score=370.66 Aligned_cols=241 Identities=33% Similarity=0.483 Sum_probs=191.8
Q ss_pred EEEEcceeEEecccccCccCCCccccccccccc-CcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHH-c
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVI-SLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKK-T 151 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I-~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~-~ 151 (384)
|+++|||||||+|+|+||| ||||.|.|+|+.| ++||+++|++.... .+.+.... .+|. ++|++++|++.++++ +
T Consensus 1 ~~~~apaKINL~L~v~~kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~~-~~~i~~~~-~~p~-~~NLv~kA~~~l~~~~~ 76 (257)
T PRK04181 1 MVMKAYAKVNIFLKILGKR-GNYHELISRFVLVKDLFDEIEFVPKSAE-SFELIGNF-DCPL-EENIIYKAYQELKNKGF 76 (257)
T ss_pred CCccccceEEEEEeeCcCC-CCCceeheeeeEccCcCcEEEEEECCCC-CEEEEcCC-CCCC-CCcHHHHHHHHHHHhcc
Confidence 3568999999999999999 9999999999999 99999999874332 24454332 2444 689999999999884 4
Q ss_pred C--CC---CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecC-CeEEEccCCc
Q 016716 152 E--SD---NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSH-GAAYCTGRGE 225 (384)
Q Consensus 152 g--~~---~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~G-G~a~~~g~Ge 225 (384)
+ .. .+++|+|+|+||+++|||||||++||++.++|++++.++++++|.++|.++|+|||||+.| +++++.|+||
T Consensus 77 ~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvPffl~~~~~a~~~G~Ge 156 (257)
T PRK04181 77 SNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAFFISGYKSANVSGIGE 156 (257)
T ss_pred ccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccEEecCCceEEEEeeCC
Confidence 4 22 4899999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred eeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCC--CHHHHHHHHHhCCCc---hHHHhccccccccccchHH
Q 016716 226 VVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKV--DPLTLLEQISRNGLS---QDVCINDLEAPAFQVLPSL 300 (384)
Q Consensus 226 ~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~--d~~~ll~al~~~d~~---~~~~~NdLe~~~~~~~p~l 300 (384)
.+++++.. + . +++++.|++.+||+++|+.++....... +.......+..+++. ...+.||||++.+..+|++
T Consensus 157 ~l~~l~~~-~-~-~~~lv~P~~~vsT~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ndle~~a~~~~P~i 233 (257)
T PRK04181 157 IVEEFEEE-I-L-NLEIFTPNIFCSTKAVYKAYREEFYDFISFNQAKELLKLSSLELLKNFKNTELNDLLAPALKLYPAL 233 (257)
T ss_pred eeEECCCC-C-C-eEEEECCCCCcCHHHHHHHHhhcccccCCccccchhhhcchHHHHHhhcccCCCCcHHHHHHhCHHH
Confidence 99998532 2 2 4899999999999999998754311111 111011111111111 1235899999999999999
Q ss_pred HHHHHHHHHcCCCCCCceeeeccccceeEec
Q 016716 301 KRLKQRIIAAGRGQYDAVFMSGSGSTIVGIG 331 (384)
Q Consensus 301 ~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~ 331 (384)
.++++ ..+.|||||||||++-
T Consensus 234 ~~~~~----------~~~~mSGSGstvF~l~ 254 (257)
T PRK04181 234 KDYLG----------EDWFFSGSGSSFFRVK 254 (257)
T ss_pred HHHhc----------CCcEEeCcCcceEEEe
Confidence 98853 2467999999999983
No 14
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.1e-47 Score=370.24 Aligned_cols=249 Identities=33% Similarity=0.505 Sum_probs=212.8
Q ss_pred EEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCCC
Q 016716 75 TLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESD 154 (384)
Q Consensus 75 ~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~ 154 (384)
.++|||||||||+|+|+|+||||.|.|+|++|++||+|++++.+ ...+.++...+|. ++|+++++++.++++++..
T Consensus 3 ~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~---~~~i~~~~~~~~~-~~n~v~~a~~~~~~~~g~~ 78 (275)
T PRK14611 3 VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHH---TLEVKTSSPQIKE-EENIVYKALRLFERYTGID 78 (275)
T ss_pred eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECC---cEEEEeCCCCCCC-cccHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999999999999999999754 2455554445665 7899999999999998887
Q ss_pred CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCCCC
Q 016716 155 NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPPI 234 (384)
Q Consensus 155 ~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~~~ 234 (384)
.+++|+++|+||+++|||||||+++|++.|+++++|.++++++|.++|.++|+|+|+|++||+++..+.|+.+.+++.+
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~Gg~~~~~~~g~~~~~~~~~- 157 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFLKGGFALGRGIGDKLEFLEKP- 157 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeecCCeEEEeccCceeEECCcC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999877777533
Q ss_pred CCCccEEEEcCCCCcchHHHHhhhccccCCC-CCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHHHHcC
Q 016716 235 PLDVPMVLIKPREACPTAEVYKHLRLDQTTK-VDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRIIAAG 311 (384)
Q Consensus 235 p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~-~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l~~~G 311 (384)
.++++++++|++.++|+++|+.++...... .....++.++..+++.. ..+.|+|+.+....+|++.++++.+.+.|
T Consensus 158 -~~~~~vv~~p~~~~sT~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~n~l~~~~~~~~P~l~~~~~~l~~~~ 236 (275)
T PRK14611 158 -ISREITLVYPNIKSSTGRVYSKVTKQILTNKEDLNIIISLLREGEEKKIEEVIENTLGEIALELYPEIKEVYRFLEYLG 236 (275)
T ss_pred -CCcEEEEEeCCCCCChHHHHHhcchhhccCcchHHHHHHHHHcCCHHHHHHhcCCcccHHHHHHCHHHHHHHHHHHhCC
Confidence 245799999999999999999887542211 22345677888877643 45689996666888999999999876655
Q ss_pred CCCCCceeeeccccceeEeccC
Q 016716 312 RGQYDAVFMSGSGSTIVGIGSP 333 (384)
Q Consensus 312 a~~~~ga~mSGSG~tvfal~~~ 333 (384)
.++.|||||||+|+++++
T Consensus 237 ----~~~~~SGSG~tvf~l~~~ 254 (275)
T PRK14611 237 ----YKPFVSGSGSSVYVFGKP 254 (275)
T ss_pred ----CCEEEeCccccceeEeCC
Confidence 478999999999999965
No 15
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=9e-48 Score=371.66 Aligned_cols=255 Identities=30% Similarity=0.480 Sum_probs=213.8
Q ss_pred ceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHH
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~ 150 (384)
|+.++++|||||||||+|+|+|.||||.|.|+|++|+|||++++++.+.. .+.+.+....+|.+++|+++++++.+++.
T Consensus 1 m~~~~~~apaKiNl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~~~~-~~~i~~~~~~~p~~~~nl~~~a~~~~~~~ 79 (280)
T PRK14614 1 MKKLTLKAPAKVNYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALSDGP-GIRVTCGREGVPDGPGNIAWRAADALLDL 79 (280)
T ss_pred CcceEEeecceEEeeeccCCCCCCCcChhheEeEECCCCeEEEEEECCCC-CEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999986532 24454444457877899999999999999
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeC
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDI 230 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l 230 (384)
++...+++|+|+|+||+++|||||||+++|++.+++++++.++++++|.++|.++|+|+|+|++||++++.|+|+.+.++
T Consensus 80 ~~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~~l~gg~~~~~g~ge~~~~l 159 (280)
T PRK14614 80 SGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVPFFIFKKTALAEGIGDKLTAV 159 (280)
T ss_pred hCCCCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceeeeCCcEEEEEcCceeEEC
Confidence 98877999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC-HHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHH
Q 016716 231 PPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD-PLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIA 309 (384)
Q Consensus 231 ~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d-~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~ 309 (384)
+.. .++++++++|++.++|+++|+.++........ ....+..+.. ......|||+..+...+|+++++++.+++
T Consensus 160 ~~~--~~~~ivl~~p~~~~sT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ndle~~~~~~~p~l~~i~~~~~~ 234 (280)
T PRK14614 160 EGV--PPLWVVLVNPGLHVSTAWVYQNLRLTSRKDLAIIPRFFGSVAE---VCALLSNDLESVTIGRFPVIGEIKEELLA 234 (280)
T ss_pred CCC--CCcEEEEECCCCCCCHHHHHhcccccccCcchhhhhhhhhHHH---HhhhcccCcHHHHHhcChHHHHHHHHHHh
Confidence 533 35789999999999999999887542111100 0011110100 01235799998888889999999999999
Q ss_pred cCCCCCCceeeeccccceeEeccCC
Q 016716 310 AGRGQYDAVFMSGSGSTIVGIGSPD 334 (384)
Q Consensus 310 ~Ga~~~~ga~mSGSG~tvfal~~~~ 334 (384)
+|+ +|++|||||||||++++++
T Consensus 235 ~Ga---lga~lSGSG~tv~~l~~~~ 256 (280)
T PRK14614 235 AGA---RGSLMSGSGSTVFGLFDDE 256 (280)
T ss_pred CCC---CEEEEeccccceEEEeCCH
Confidence 998 8999999999999999864
No 16
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.8e-47 Score=370.19 Aligned_cols=264 Identities=33% Similarity=0.497 Sum_probs=226.9
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCC
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTES 153 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~ 153 (384)
++++|||||||||+|+|+|.||||.+.+++++|++||+|++++.+.. .+.+......+|.+++|++.++++.++++++.
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~-~~~i~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 81 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKED-GIVVESNNRYVPNDERNLAYKAAKLLKERYNI 81 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCC-CEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Confidence 77899999999999999999999999999999999999999987543 24454443456777899999999999999888
Q ss_pred CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCCC
Q 016716 154 DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPP 233 (384)
Q Consensus 154 ~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~~ 233 (384)
..+++|+|+++||.|+|||||||+++|++.|++++++.+++.++|.++|.++|.|+|++++||++++.++|+.+.+++.
T Consensus 82 ~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~Gg~~~~~~~g~~~~~~~~- 160 (286)
T PRK00128 82 KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVPFCIYGGTALATGRGEKITPLKS- 160 (286)
T ss_pred CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCCCeEeeCCeEEEecCCcccccCCC-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887766643
Q ss_pred CCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHHHHcC
Q 016716 234 IPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRIIAAG 311 (384)
Q Consensus 234 ~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l~~~G 311 (384)
++++++++++|++.++|+++|+.++...........++.++.++|+.. ..+.|+||+++...+|+++++++.++++|
T Consensus 161 -~~~~~~vv~~p~~~~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~n~l~~~~~~~~p~l~~l~~~~~~~G 239 (286)
T PRK00128 161 -PPSCWVVLAKPDIGVSTKDVYKNLDLDKISHPDTEKLIEAIEEGDYQGICANMGNVLENVTLKKYPEIAKIKERMLKFG 239 (286)
T ss_pred -CCCcEEEEEcCCCCCCHHHHHhcCccccccCcchHHHHHHHhcCCHHHHHHhccCcHHHHHHhhChHHHHHHHHHHhcC
Confidence 236789999999999999999987643223334556778888888654 45678999999888999999999999999
Q ss_pred CCCCCceeeeccccceeEeccCC-Cccchhhcc
Q 016716 312 RGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDN 343 (384)
Q Consensus 312 a~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~ 343 (384)
+ +|+.|||||||+|++++++ .++++.+.+
T Consensus 240 a---~g~~lSGsG~sv~~l~~~~~~~~~i~~~l 269 (286)
T PRK00128 240 A---DGALMSGSGPTVFGLFDDESRAQRIYNGL 269 (286)
T ss_pred C---CeeEEcccCccEEEEeCCHHHHHHHHHHh
Confidence 8 8999999999999999863 455555443
No 17
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=4.6e-47 Score=365.01 Aligned_cols=249 Identities=31% Similarity=0.497 Sum_probs=207.1
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCC
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTES 153 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~ 153 (384)
++++|||||||||+|+|+|.||||.|.|+|++|++||+|++++.++. ...+.+...+++ +++|+++++++.++++++.
T Consensus 7 ~~~~apaKiNL~L~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~-~~~i~~~~~~~~-~~~N~v~~a~~~l~~~~~~ 84 (271)
T PRK00343 7 LDWPAPAKLNLFLHITGRRADGYHELQTLFQFLDWGDTLHFEVRDDG-EIRLLTPIPGVP-EEDNLIVRAARLLQKATGT 84 (271)
T ss_pred EEEeeeeeEEEEeecCCcCCCCCCeeeEEEEEcccceEEEEEECCCC-cEEEeCCCCCCC-CcccHHHHHHHHHHHHhCC
Confidence 67799999999999999999999999999999999999999986543 244443322233 3589999999999999888
Q ss_pred CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCCC
Q 016716 154 DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPP 233 (384)
Q Consensus 154 ~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~~ 233 (384)
..+++|+|+|+||+|+|||||||+++|++.|+|++++.++++++|.++|.++|+|+|+|+.|++++..|+|+.+.+++.
T Consensus 85 ~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~igaDvp~~l~g~~~~~~g~g~~~~~l~~- 163 (271)
T PRK00343 85 PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGADVPVFVRGHAAFAEGIGEILTPVDL- 163 (271)
T ss_pred CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEecCCcEEEEecCCEEEECCC-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998887752
Q ss_pred CCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHHcCCC
Q 016716 234 IPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRG 313 (384)
Q Consensus 234 ~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~~Ga~ 313 (384)
| ..++++++|++.++|+++|+.++... ... ...+..+..+ .+.||||...+..+|++.++++.+.+.|+
T Consensus 164 -~-~~~~vl~~p~~~~sT~~~~~~~~~~~-~~~--~~~~~~~~~~-----~~~Ndle~~~~~~~P~~~~~~~~l~~~ga- 232 (271)
T PRK00343 164 -P-EKWYLVVKPGVHISTAEIFSDPDLTR-DTP--KISIADFLAG-----PFRNDCEPVVRKRYPEVAQALSWLLEYAP- 232 (271)
T ss_pred -C-CcEEEEEeCCCCcChHHHHhhhhhcc-CCC--hhhHHHHHhc-----cccCCHHHHHHHhChHHHHHHHHHHhCCC-
Confidence 3 45688999999999999998654321 111 1112223222 26899999999999999999999998874
Q ss_pred CCCceeeeccccceeEeccCC-Cccchh
Q 016716 314 QYDAVFMSGSGSTIVGIGSPD-PPQFIY 340 (384)
Q Consensus 314 ~~~ga~mSGSG~tvfal~~~~-~a~~i~ 340 (384)
+.|||||||||++++++ .++++.
T Consensus 233 ----~~mSGSG~tvF~l~~~~~~a~~~~ 256 (271)
T PRK00343 233 ----SRMTGTGACVFAEFDTEAEAEQVL 256 (271)
T ss_pred ----eEEeccccceEEEcCCHHHHHHHH
Confidence 77999999999999874 344443
No 18
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=100.00 E-value=1.2e-46 Score=369.10 Aligned_cols=267 Identities=32% Similarity=0.473 Sum_probs=223.5
Q ss_pred ceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHH
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~ 150 (384)
|..++++|||||||||+|+|+|.||||.+++++++|++||+|++++.++. ...+.+....+|.+++|+++++++.++++
T Consensus 1 ~~~~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 79 (312)
T PRK02534 1 MRSYTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDG-TIRLHCDHPQLSTDDDNLIYRAAQLLRKR 79 (312)
T ss_pred CceEEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCC-cEEEEECCCCCCCCchhHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999986543 24444433357777789999999999999
Q ss_pred cCCC-CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeee
Q 016716 151 TESD-NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQD 229 (384)
Q Consensus 151 ~g~~-~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~ 229 (384)
++.. .+++|+|+|+||.|+|||||||+++|++.|++++++.+++.++|+++|.++|+|+|+|++||++++.++|+.+.+
T Consensus 80 ~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~GG~~~~~~~g~~~~~ 159 (312)
T PRK02534 80 FPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFCIAGGTQLCFGRGEILEP 159 (312)
T ss_pred hCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCcEEeECCeEEEECCCCEeEE
Confidence 8876 699999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCCCCccEEEE-cCCCCcchHHHHhhhcccc---CCCCC-----------HHHHHHHHHhCCCch--HHHhcccccc
Q 016716 230 IPPPIPLDVPMVLI-KPREACPTAEVYKHLRLDQ---TTKVD-----------PLTLLEQISRNGLSQ--DVCINDLEAP 292 (384)
Q Consensus 230 l~~~~p~~~~ivIv-~P~~~vsT~~a~~~l~~~~---~~~~d-----------~~~ll~al~~~d~~~--~~~~NdLe~~ 292 (384)
++. |.+++++++ +|++.++|+++|+.++... .+..+ ...++.++..+|+.. ..++|+|+..
T Consensus 160 ~~~--~~~~~~vv~~~p~~~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~~n~l~~~ 237 (312)
T PRK02534 160 LPD--LDGLGVVLAKYPSLSVSTPWAYKTYRQQFGDTYLSDEEDFEQRRQALRSGPLLQAISAKDPPPIAQLLHNDLEKV 237 (312)
T ss_pred CCC--CCCcEEEEEECCCCCccHHHHHHHHhhhcccccccCcccccccccccchhHHHHhhhccCHHHHHHhhhCchHHH
Confidence 753 357888887 7999999999987665321 11111 123567888887654 4578999877
Q ss_pred ccccchHHHHHHHHHH-HcCCCCCCceeeeccccceeEeccCC-Cccchhhcc
Q 016716 293 AFQVLPSLKRLKQRII-AAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDN 343 (384)
Q Consensus 293 ~~~~~p~l~~l~~~l~-~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~ 343 (384)
....+|+++++++.++ +.|+ +|+.|||||||||++++++ .++.+.+++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~Ga---~~~~lSGsGptv~~l~~~~~~a~~~~~~l 287 (312)
T PRK02534 238 VLPEYPQVAKLLELLSSLPGC---LGTMMSGSGPTCFALFESQEQAEQALEQV 287 (312)
T ss_pred hHhcChHHHHHHHHHHhccCC---CeeEEECcCcceEEEeCCHHHHHHHHHHH
Confidence 7777999999999888 8898 8999999999999999873 555555443
No 19
>PLN02451 homoserine kinase
Probab=100.00 E-value=4e-40 Score=329.16 Aligned_cols=257 Identities=20% Similarity=0.247 Sum_probs=210.6
Q ss_pred eeEEEEcceeE-EecccccCccCCCcccccccccccC-cccEEEEEeCCC--CCceEEEe---eCCCCCCC-CChHHHHH
Q 016716 72 SRLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVIS-LGDTIKFSLSPL--KSRDRLST---NVPGIPVD-DSNLIIKA 143 (384)
Q Consensus 72 ~~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~-l~d~v~i~~~~~--~~~~~l~~---~~~~lp~d-~~Nli~ka 143 (384)
.+++++||||+ || ++|||.++ .++| +||+|++++.+. .+.+.+.+ ....+|.+ ++|++++|
T Consensus 52 ~~~~~~aPA~~ANL--------GpgfD~lG---~a~d~l~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv~~a 120 (370)
T PLN02451 52 TSVKAFAPATVANL--------GPGFDFLG---CAVDGLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCAGIA 120 (370)
T ss_pred ceEEEEeccchhhc--------ccChhhhh---hhhccCcCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcHHHH
Confidence 45999999999 99 89999999 7888 999999998653 11245542 33457877 59999999
Q ss_pred HHHHHHHcCCC-CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCccee--------ec
Q 016716 144 LNLYRKKTESD-NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFF--------FS 214 (384)
Q Consensus 144 ~~~~~~~~g~~-~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~--------~~ 214 (384)
++.++++++.. .|++|+|+|+||+|+|||||||+++|++.|+|+++|.+++++||+++|.++|.|++++ ++
T Consensus 121 ~~~~~~~~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h~Dnva~a~~ 200 (370)
T PLN02451 121 AIATMKLLGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYHADNIAPALM 200 (370)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCCccchhHhhc
Confidence 99999999975 6999999999999999999999999999999999999999999999999999988866 68
Q ss_pred CCeEEEccCC-ceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC-------HHHHHHHHHhCCCch--HH
Q 016716 215 HGAAYCTGRG-EVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD-------PLTLLEQISRNGLSQ--DV 284 (384)
Q Consensus 215 GG~a~~~g~G-e~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d-------~~~ll~al~~~d~~~--~~ 284 (384)
||+++..+.. ..+.+++.+.+.+|++|+++|++.++|+++|+.++.. +...+ ...++.++.++|+.. ..
T Consensus 201 GG~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~ar~~lp~~-~~~~~~v~~~~~~~~l~~al~~~d~~~l~~~ 279 (370)
T PLN02451 201 GGFVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKKMRAALPKE-IPMKHHVWNCSQAAALVAAILQGDAVLLGEA 279 (370)
T ss_pred CCEEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999987652 2344444333357999999999999999999988753 22222 124567888888653 45
Q ss_pred Hhcc--ccccccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccC-CCccchhhcc
Q 016716 285 CIND--LEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSP-DPPQFIYDDN 343 (384)
Q Consensus 285 ~~Nd--Le~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~-~~a~~i~~~~ 343 (384)
+.|| +|+++..++|+++++++.++++|+ +|+.|||||||+|+++++ +.++++.+++
T Consensus 280 m~nD~~~e~~r~~~~P~l~~l~~~~~~~GA---~ga~mSGSGptvfal~~~~~~a~~i~~~l 338 (370)
T PLN02451 280 LSSDKIVEPTRAPLIPGMEAVKKAALEAGA---YGCTISGAGPTAVAVIDDEEKGEEVGERM 338 (370)
T ss_pred HHHHHHhHHHHhhhCccHHHHHHHHHHCCC---eEEEEEccchheEEEEcCHHHHHHHHHHH
Confidence 7777 799999999999999999999998 899999999999999986 3566666554
No 20
>PRK01212 homoserine kinase; Provisional
Probab=100.00 E-value=6.1e-40 Score=319.67 Aligned_cols=255 Identities=21% Similarity=0.272 Sum_probs=208.7
Q ss_pred ceeEEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEeCCCCC-ceEEEee--C-CCCCCC-CChHHHHHH
Q 016716 71 LSRLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKS-RDRLSTN--V-PGIPVD-DSNLIIKAL 144 (384)
Q Consensus 71 ~~~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~-~~~l~~~--~-~~lp~d-~~Nli~ka~ 144 (384)
|+++++++||++ || ++|||.|+ +++++||++++++..... .+.+.+. . .++|.+ ++|++++++
T Consensus 1 ~~~~~v~~pat~anl--------g~gfd~lG---~al~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nli~~a~ 69 (301)
T PRK01212 1 MMMVKVRVPATSANL--------GPGFDSLG---LALSLYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPEKNLVYQAA 69 (301)
T ss_pred CceEEEEEecchhhc--------ccChhhhh---ccccCccEEEEEEccCCCCceEEEEEecCCCcCCCCCccccHHHHH
Confidence 456899999999 99 89999999 889999999998754311 1123322 1 357877 789999999
Q ss_pred HHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---CcceeecCCeEEEc
Q 016716 145 NLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---DIPFFFSHGAAYCT 221 (384)
Q Consensus 145 ~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---Dvp~~~~GG~a~~~ 221 (384)
+.+++.++...+++|+|+|+||.|+|||||||+++|++.|++++++.+++.++|+++|.++|+ |+|+|++||+++..
T Consensus 70 ~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~~l~GG~~~~~ 149 (301)
T PRK01212 70 LKFLEKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHPDNVAPALLGGLVLAL 149 (301)
T ss_pred HHHHHHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHhCCEEEEE
Confidence 999999998789999999999999999999999999999999999999999999999999998 89999999999995
Q ss_pred -cCCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCH-------HHHHHHHHhCCCch--HHHhccc-c
Q 016716 222 -GRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDP-------LTLLEQISRNGLSQ--DVCINDL-E 290 (384)
Q Consensus 222 -g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~-------~~ll~al~~~d~~~--~~~~NdL-e 290 (384)
++|+.+.+++. |+++++++++|++.++|+++|+.++.. .+..+. ..++.++.++|+.. ..+.|++ +
T Consensus 150 ~g~g~~~~~~~~--~~~~~~vlv~p~~~~sT~~a~~~l~~~-~~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~~~~~~~ 226 (301)
T PRK01212 150 EENGVISVKIPV--FDDLKWVVAIPNIELSTAEARAVLPKQ-YSLKDAVFNSSRAALLVAALYTGDYELAGRAMKDVLHE 226 (301)
T ss_pred ECCceEEEEecC--CCCeEEEEEECCCcCCHHHHHHhCcCc-CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhchhheH
Confidence 88888887753 347889999999999999999877542 221111 23456787777643 4556777 6
Q ss_pred ccccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCCCccchhhc
Q 016716 291 APAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDD 342 (384)
Q Consensus 291 ~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~~~ 342 (384)
+++...+|++.++++.+++.|+ +|+.|||||||||++++++..+++.+.
T Consensus 227 ~~~~~~~p~~~~i~~~~~~~Ga---~g~~~SGsGptv~~l~~~~~~~~~~~~ 275 (301)
T PRK01212 227 PYRAKLIPGFAEVRQAALEAGA---LGAGISGAGPTVFALCDKEDAEKVADA 275 (301)
T ss_pred HhHHhhCCCHHHHHHHHHHCCC---eEEEEEchhhheeEEeccccHHHHHHH
Confidence 6667789999999999999998 899999999999999987543444433
No 21
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=317.04 Aligned_cols=245 Identities=21% Similarity=0.302 Sum_probs=207.6
Q ss_pred ceeEEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---CCCCCCCChHHHHHHHH
Q 016716 71 LSRLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---PGIPVDDSNLIIKALNL 146 (384)
Q Consensus 71 ~~~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---~~lp~d~~Nli~ka~~~ 146 (384)
|..+++++||++ || ++|||.|+ .++++|+++.+....+ ...+.... .++|.+.+|++++++..
T Consensus 1 ~~~~~v~aPASSANl--------GpGFD~lG---lAl~~~~~~~v~~~~~--~~~i~~~g~~~~~iP~~~~n~~~~~~~~ 67 (299)
T COG0083 1 MLMMKVRVPASSANL--------GPGFDVLG---LALDLYNDVVVVEVVD--KFEIEVEGEGADKIPLDPENLVYQAALK 67 (299)
T ss_pred CceEEEEEeeccccc--------CCCcccee---eeccccCcEEEEEecC--cEEEEEecccccCCCCCcceeHHHHHHH
Confidence 345899999999 99 89999999 8999999999887654 24554433 46899989999999999
Q ss_pred HHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccC----cceeecCCeEEEcc
Q 016716 147 YRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSD----IPFFFSHGAAYCTG 222 (384)
Q Consensus 147 ~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~D----vp~~~~GG~a~~~g 222 (384)
+.+.+|.+.+++|+++|+||+|+|||||+|.++|++.|+|++++.+|+++++++++.++|+| +|++ .||+.++..
T Consensus 68 ~~~~~~~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgHpDNVapa~-lGG~~l~~~ 146 (299)
T COG0083 68 FLEALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGHPDNVAPAV-LGGLVLVEE 146 (299)
T ss_pred HHHHhCCCccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCchHHHHh-hCCEEEEee
Confidence 99999998779999999999999999999999999999999999999999999999999975 5666 478877764
Q ss_pred CCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCH-------HHHHHHHHhCCCch--HHHhccc-ccc
Q 016716 223 RGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDP-------LTLLEQISRNGLSQ--DVCINDL-EAP 292 (384)
Q Consensus 223 ~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~-------~~ll~al~~~d~~~--~~~~NdL-e~~ 292 (384)
.+.+...+.++|.+|++++++|+++++|+++|+.||+. +++.|. ..++.+|.+++... ..+.+.+ |||
T Consensus 147 -~~~~~~~~v~~~~~~~~v~~iP~~e~sT~~aR~vLP~~-~~~~daV~n~s~~a~lv~al~~~~~~l~~~~~~D~ihepy 224 (299)
T COG0083 147 -ESGIISVKVPFPSDLKLVVVIPNFEVSTAEARKVLPKS-YSRKDAVFNLSRAALLVAALLEGDPELLRAMMKDVIHEPY 224 (299)
T ss_pred -cCCceEEEccCCcceEEEEEeCCccccHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhccccchhh
Confidence 22232233345678999999999999999999999975 666653 24678899888332 3556666 999
Q ss_pred ccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCC
Q 016716 293 AFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPD 334 (384)
Q Consensus 293 ~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~ 334 (384)
|.++.|.+.++++.+.+.|+ +|+.+||||||+|+++++.
T Consensus 225 R~~L~P~~~~v~~~a~~~gA---~g~~lSGAGPTi~al~~~~ 263 (299)
T COG0083 225 RAKLVPGYAEVREAALEAGA---LGATLSGAGPTVFALADES 263 (299)
T ss_pred hhhhCccHHHHHHHHhhCCc---eEEEEecCCCeEEEEeccc
Confidence 99999999999999999998 9999999999999999975
No 22
>PTZ00299 homoserine kinase; Provisional
Probab=100.00 E-value=8.2e-39 Score=315.31 Aligned_cols=243 Identities=18% Similarity=0.273 Sum_probs=198.6
Q ss_pred eEEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC-CCCCCCCChHHHHHHHHHHHH
Q 016716 73 RLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV-PGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 73 ~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~-~~lp~d~~Nli~ka~~~~~~~ 150 (384)
++++++||++ || ++|||.|+ +++++||++++++.+.. .+.++... .++|.+++|+++++++.++++
T Consensus 7 ~~~v~vPATsANl--------GpGFDsLG---lAL~lyd~v~v~~~~~~-~i~i~G~~~~~lp~~~~nlv~~a~~~~~~~ 74 (336)
T PTZ00299 7 KVVLRVPATTANI--------GPAYDTLG---MALSIFMELTVEHADAF-SMTVEGEGSEHISTDEDNMVVQACRLAFEE 74 (336)
T ss_pred eEEEEEecccccc--------cccHHHHh---hhcccCcEEEEEECCCC-EEEEecCCcCCCCCCcchHHHHHHHHHHHH
Confidence 4899999999 99 89999988 89999999999975431 23333221 346778899999999999988
Q ss_pred cCCC--CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCC---HHHHHHHHhhccc--C-cceeecCCeEEEcc
Q 016716 151 TESD--NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVAT---EKELQEWSSEIGS--D-IPFFFSHGAAYCTG 222 (384)
Q Consensus 151 ~g~~--~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls---~~eL~~la~~ie~--D-vp~~~~GG~a~~~g 222 (384)
++.. ++++|+|+|+||+++|||||||+++|++.|+|++++.+++ .+||+++|.++|+ | |+++++||++++..
T Consensus 75 ~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EGHpDNVapal~GG~~~~~~ 154 (336)
T PTZ00299 75 YAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEGHPDNAAPAIYGGIQLVYK 154 (336)
T ss_pred hcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcCCcccHHHHHhCCEEEEEe
Confidence 8753 5899999999999999999999999999999999999995 8999999999964 7 88899999988864
Q ss_pred --CCceee-eCCCCCCCCccEEEEcCCCC--cchHHHHhhhccccCCCCCH-------HHHHHHHHhCCCch-HHHhccc
Q 016716 223 --RGEVVQ-DIPPPIPLDVPMVLIKPREA--CPTAEVYKHLRLDQTTKVDP-------LTLLEQISRNGLSQ-DVCINDL 289 (384)
Q Consensus 223 --~Ge~l~-~l~~~~p~~~~ivIv~P~~~--vsT~~a~~~l~~~~~~~~d~-------~~ll~al~~~d~~~-~~~~NdL 289 (384)
.|+.+. +++ .|+++++|+++|++. ++|+++|+.+|.. ++..|. ..++.++..+|+.. ..+.+.|
T Consensus 155 ~~~ge~~~~~i~--~~~~~~~vv~iP~~~~~~sT~~aR~vLP~~-v~~~dav~n~~~~~~lv~al~~~d~~ll~~~~D~l 231 (336)
T PTZ00299 155 KDNGRFLTYRVP--TPPNLSVVLFVPHNKMKANTHVTRNLIPTS-VSLEDAVFNISRTSILVLALSTGDLRMLKSCSDKL 231 (336)
T ss_pred cCCCceEEEecC--CCCCeEEEEEECCCCccccHHHHHhhCccc-CcHHHHHHhhhHHHHHHHHHHhCCHHHHHhchhcc
Confidence 355433 443 445799999999985 5999999998764 444332 23668888888643 2344556
Q ss_pred -ccccc-ccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccC
Q 016716 290 -EAPAF-QVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSP 333 (384)
Q Consensus 290 -e~~~~-~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~ 333 (384)
||+|. .++|++.++++.+.++|+ +|+.|||||||||++++.
T Consensus 232 hep~R~~~liP~~~~v~~~~~~~Ga---~g~~lSGSGPTv~al~~~ 274 (336)
T PTZ00299 232 HEQQRSDALFPHFRPCVKAAREAGA---HYAFLSGAGPSVCALVGG 274 (336)
T ss_pred cCcccccccCccHHHHHHHHHHCCC---eEEEEEchhhhheEEecc
Confidence 89995 999999999999999998 899999999999999973
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=100.00 E-value=7.8e-39 Score=312.43 Aligned_cols=247 Identities=21% Similarity=0.271 Sum_probs=201.8
Q ss_pred EEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEe----CCCCCceEEEeeC-CCCCCC-CChHHHHHHHH
Q 016716 74 LTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSL----SPLKSRDRLSTNV-PGIPVD-DSNLIIKALNL 146 (384)
Q Consensus 74 ~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~----~~~~~~~~l~~~~-~~lp~d-~~Nli~ka~~~ 146 (384)
+++++||++ || ++|||.|+ .++++|++++++. ......+.+.... ..+|.+ ++|+++++++.
T Consensus 1 ~~v~vpatsaNl--------g~GfD~lg---~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nlv~~a~~~ 69 (302)
T TIGR00191 1 FRVKVPASSANL--------GPGFDVLG---AALSLYLGLTVTDVVAQESDDTEIEAEGEGVEKIPTEPTDNLIYQVAKR 69 (302)
T ss_pred CEEEEecchhcc--------ccChhhhh---hhccccceEEEEeeecccCCCceEEEEecccccCCCCcccccHHHHHHH
Confidence 478999999 99 89999999 8999999999986 3221013333332 457887 79999999999
Q ss_pred HHHHcCCC-CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc--C-cceeecCCeEEEcc
Q 016716 147 YRKKTESD-NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS--D-IPFFFSHGAAYCTG 222 (384)
Q Consensus 147 ~~~~~g~~-~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~--D-vp~~~~GG~a~~~g 222 (384)
++++++.+ .+++|+|+|+||+++|||||||+++|++.|+|++++.++++++|+++|.++|. | ++++++||+++..+
T Consensus 70 ~~~~~g~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h~Dnv~~~l~GG~~~~~~ 149 (302)
T TIGR00191 70 FLDQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGHPDNVAPALLGGFQLAFV 149 (302)
T ss_pred HHHHcCCCCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCcccHHHHhccCEEEEEE
Confidence 99999986 79999999999999999999999999999999999999999999999999995 4 88888899999887
Q ss_pred CCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCH-------HHHHHHHHhCCCch--HHHhccc-ccc
Q 016716 223 RGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDP-------LTLLEQISRNGLSQ--DVCINDL-EAP 292 (384)
Q Consensus 223 ~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~-------~~ll~al~~~d~~~--~~~~NdL-e~~ 292 (384)
.|+.+.+++.+.++++++++++|++.++|+++|+.++.. ++..+. ..+..++.+++... ..+.|.+ |++
T Consensus 150 ~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~a~~~lp~~-~~~~~~v~~~~~~~~l~~al~~~~~~l~~~~~~d~l~e~~ 228 (302)
T TIGR00191 150 EDDKLEVLKIPIFSKLDWVLAIPNIEVSTAEARAVLPKA-YPRQDLVFNLSHLAGLVHAIYQKKPDLGAIMMKDRIHQPY 228 (302)
T ss_pred cCCceEEEEeCCCCCEEEEEEECCCcccHHHHHHhCccc-CCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcccccchhh
Confidence 776666655443357899999999999999999988653 322221 12445676664321 2345666 999
Q ss_pred ccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCCC
Q 016716 293 AFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDP 335 (384)
Q Consensus 293 ~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~ 335 (384)
+..++|+++++++.+++.|+ +|++|||||||||++++++.
T Consensus 229 ~~~l~p~l~~i~~~~~~~Ga---~g~~lSGsGptv~al~~~~~ 268 (302)
T TIGR00191 229 RESLIPNLFKIKQAALEKGA---YGITISGSGPTILAMADEEF 268 (302)
T ss_pred HhhhCCCHHHHHHHHHHCCC---eEEEEEchhhhheEEecchh
Confidence 99899999999999999998 89999999999999998753
No 24
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=1.8e-33 Score=277.64 Aligned_cols=258 Identities=15% Similarity=0.114 Sum_probs=195.4
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCC---CCChHHHHHHHHHHHH
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPV---DDSNLIIKALNLYRKK 150 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~---d~~Nli~ka~~~~~~~ 150 (384)
.+..+|||+.| .|+|.+.|. +.+++++|+++|+++|+..+......+.++...+|. +..|+++++++.+.+.
T Consensus 11 ~~~~~~~kvil----~GEHaVvyg-~~aI~~~I~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a~~~~~~~ 85 (328)
T PTZ00298 11 GKHIGYGKVIL----FGEHFVVYG-AEAIVAGIDEYTECRLELTKGVPGLQVVDQRPAVPGYIVEKREEQRKAHQLVLRH 85 (328)
T ss_pred cCCCcCeeEEE----EecceeecC-CchhhhecccceEEEEEEccCCCCceeccccccccchHHHhHHHHHHHHHHHHHH
Confidence 46679999999 799998775 678899999999988886542111233223223443 2489999999999999
Q ss_pred cCCC---CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------cCcceeecCCeE
Q 016716 151 TESD---NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---------SDIPFFFSHGAA 218 (384)
Q Consensus 151 ~g~~---~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---------~Dvp~~~~GG~a 218 (384)
++.. .|++|+|+|+||+|+|||||||+++|++.|++++++.++++++|+++|.++| .|+|++++||++
T Consensus 86 ~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~~~~Gg~~ 165 (328)
T PTZ00298 86 LNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYGGLI 165 (328)
T ss_pred HhcccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHcCCeE
Confidence 8864 4999999999999999999999999999999999999999999999977644 489999999998
Q ss_pred EEcc-CC-ceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC------------HHHHHHHHHhCCCch--
Q 016716 219 YCTG-RG-EVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD------------PLTLLEQISRNGLSQ-- 282 (384)
Q Consensus 219 ~~~g-~G-e~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d------------~~~ll~al~~~d~~~-- 282 (384)
++.+ .| +.+.+++ +|.++++++++|++..+|+++++.++......++ ...+..++..+|+..
T Consensus 166 ~~~~~~g~~~~~~l~--~~~~~~lvv~~~~~~~sT~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~al~~~d~~~lg 243 (328)
T PTZ00298 166 SYRRVNGKSVFKRIA--FQQPLYLVVCSTGITASTTKVVGDVRKLKENQPTWFNRLLENYNACVSEAKEALQKGNLFRVG 243 (328)
T ss_pred EEecCCCccceeEec--CCCCCeEEEEECCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8763 34 2345554 3346889999999999999998766431111111 012356777777643
Q ss_pred HHH---hccccccccccchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccC-CCccchhhc
Q 016716 283 DVC---INDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSP-DPPQFIYDD 342 (384)
Q Consensus 283 ~~~---~NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~-~~a~~i~~~ 342 (384)
..| +|.++.... .+|+++++++.+++.|+ +|++|||||+ |||+++++ +.++++.+.
T Consensus 244 ~~m~~~~~~l~~~~v-~~p~l~~l~~~~~~~Ga---~gaklSGsG~GG~v~al~~~~~~a~~~~~~ 305 (328)
T PTZ00298 244 ELMNANHDLCQKLTV-SCRELDSIVQTCRTYGA---LGAKMSGTGRGGLVVALAASEDQRDAIAKA 305 (328)
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHhCCC---ceeEeccCCCCeEEEEEecchhhHHHHHHH
Confidence 233 455565543 69999999999999998 8999999998 89999986 445555533
No 25
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=9.2e-32 Score=262.17 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=186.2
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCC
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTES 153 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~ 153 (384)
++++||||+|| .|+|.+-| .-.+++++|++|+++++++.++ ...+++...+.+ ++.+++.++++.+.++++.
T Consensus 2 ~~~~aPgkv~L----~Geh~~~~-g~~~l~~aI~~~~~v~i~~~~~--~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (302)
T PRK03926 2 VLCSAPGKIYL----FGEHAVVY-GKPAIACAIDLRTYVRAEFNDD--SIYIESDYGKTG-EKHPYVSAAIEKMREEADK 73 (302)
T ss_pred eEEeeeeEEEE----Eecceeec-CCeEEEEEecceEEEEEEECCC--ceEEeccccccc-chhHHHHHHHHHHHHhcCC
Confidence 67899999999 58887633 3346679999999999987643 234443322222 3445788999999888775
Q ss_pred CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhc---------ccCcceeecCCeEEEccCC
Q 016716 154 DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEI---------GSDIPFFFSHGAAYCTGRG 224 (384)
Q Consensus 154 ~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~i---------e~Dvp~~~~GG~a~~~g~G 224 (384)
++++|+++++||+|+|||||||+++|++.|++++++.+++.++|+++|.++ +.|++++++||+++..+.+
T Consensus 74 -~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg~D~~~~~~Gg~~~~~~~~ 152 (302)
T PRK03926 74 -DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTMGGFVTIPDRK 152 (302)
T ss_pred -CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCchHHHHHHhcCCeEEEcCCC
Confidence 499999999999999999999999999999999999999999999999988 4578888899998887654
Q ss_pred ceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCH------------HHHHHHHHhCCCch--HHH-hcc-
Q 016716 225 EVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDP------------LTLLEQISRNGLSQ--DVC-IND- 288 (384)
Q Consensus 225 e~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~------------~~ll~al~~~d~~~--~~~-~Nd- 288 (384)
+++ .| ++++++++|+...+|+++++.++......++. ..+..++.++|+.. ..+ .|+
T Consensus 153 ----~l~--~~-~~~~vl~~~~~~~sT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~ 225 (302)
T PRK03926 153 ----KLP--FP-ECGIVVGYTGSSGSTKELVANVRKLKEEYPELIEPILSSIGKISEKGEELILSGDYVSLGELMNINQG 225 (302)
T ss_pred ----cCC--CC-CceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233 23 67899999999999999988765321111110 01234566676543 222 122
Q ss_pred ccccccccchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccCCCccchhhc
Q 016716 289 LEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSPDPPQFIYDD 342 (384)
Q Consensus 289 Le~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~~~a~~i~~~ 342 (384)
+.+.....+|+++++++.+++.|+ +|++|||||+ |+|++++++.++++.++
T Consensus 226 ~~~~~~~~~p~l~~l~~~~~~~ga---~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~ 278 (302)
T PRK03926 226 LLDALGVSTKELSELIYAARTAGA---LGAKITGAGGGGCMVALAAPEKQSEVATA 278 (302)
T ss_pred HHHhcCCCCHHHHHHHHHHHhCCC---ceeeeccCCCCCEEEEEeccccHHHHHHH
Confidence 223333468999999999999998 8999999997 99999987665555544
No 26
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.97 E-value=1.1e-29 Score=250.06 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=181.7
Q ss_pred EEEcceeEEecccc-cCccCCCccccccccccc-CcccEEEEEeCCCCCceEEEe-eCCCCCCC-CChHHHHHHHHHHHH
Q 016716 75 TLFSPCKINAFLRI-TNKREDGFHDLASLFHVI-SLGDTIKFSLSPLKSRDRLST-NVPGIPVD-DSNLIIKALNLYRKK 150 (384)
Q Consensus 75 ~v~aPAKiNL~L~I-~g~~~dGyh~L~sl~~~I-~l~d~v~i~~~~~~~~~~l~~-~~~~lp~d-~~Nli~ka~~~~~~~ 150 (384)
+|.+|++++++|.. .|.++-=|-.++ .+| +++|+|++++.++. .+.+.. ....+|.+ ..|+++++++.++++
T Consensus 2 ~v~~~~rlH~g~~d~~~~~gr~~Gg~G---~al~~~~~~v~v~~~~~~-~v~~~~~~g~~l~~~~~~n~~~~~~~~~~~~ 77 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSIGRVDGGVG---LALEEPEIVIGLKESDDM-GVEFTSHAEGKLGEEYRRSRIMEAARKTLKH 77 (324)
T ss_pred eecccccccccccCCCCccCccccceE---EEEeCCcEEEEEEECCCc-eEEecccccccccchhHHHHHHHHHHHHHHH
Confidence 68899999996644 444442244466 566 69999999987643 222221 11234443 679999999999999
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---CcceeecCCeEEEccC--Cc
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---DIPFFFSHGAAYCTGR--GE 225 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---Dvp~~~~GG~a~~~g~--Ge 225 (384)
++. .+++|+|+|+||.++|||||||+++|++.|+|++++.+++++||++++.+.|. |++.+++||++++.|. ++
T Consensus 78 ~g~-~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~~~va~~~~GG~vv~~G~~~~~ 156 (324)
T TIGR00144 78 IGS-EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSGIGVASFEDGGFIVDGGHSSKE 156 (324)
T ss_pred hCC-CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCccceeeeeeCCEEEECCccccc
Confidence 986 69999999999999999999999999999999999999999999999999996 7888999999999763 21
Q ss_pred eee--------------eCCCCCCCCccEEEEcCCCCcchHHHHhh--hccc-cCCCCCH--------HHHHHHHHhCCC
Q 016716 226 VVQ--------------DIPPPIPLDVPMVLIKPREACPTAEVYKH--LRLD-QTTKVDP--------LTLLEQISRNGL 280 (384)
Q Consensus 226 ~l~--------------~l~~~~p~~~~ivIv~P~~~vsT~~a~~~--l~~~-~~~~~d~--------~~ll~al~~~d~ 280 (384)
... ..+.++| +|++|+++|+.. +|..+++. ++.. .++..|. ..++.++.++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~~are~~~lp~~~~i~~~dv~~~~~~~l~~l~~al~~~d~ 234 (324)
T TIGR00144 157 KSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVSGRREVNIFQKYCPVPLRDVERICHLILMKMMPAVVEGDL 234 (324)
T ss_pred ccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 111 1233456 899999999998 88877775 7653 1232221 234788999887
Q ss_pred ch--HHHhcc--------cc-ccccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCCCccchhh
Q 016716 281 SQ--DVCIND--------LE-APAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYD 341 (384)
Q Consensus 281 ~~--~~~~Nd--------Le-~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~~ 341 (384)
.. ..+ || +| +++. |.+.++++.+.+ + +|+.|||||||||++++++ ++++.+
T Consensus 235 ~~~~~~l-~d~~~~~f~~~~~~~r~---~li~~~~~~l~~--a---~g~~iSGsGPTv~al~~~~-~~~~~~ 296 (324)
T TIGR00144 235 DAFGESV-NEIQGLGFKKIERELQD---PLIKRIIDSMIS--A---PGAGMSSFGPTVYAVTDEK-PGNIAG 296 (324)
T ss_pred HHHHHHH-HHHHhhcchhhhccccC---HHHHHHHHHHHh--c---cCceecCCCCeEEEEecCc-hHHHHH
Confidence 54 334 55 43 4554 445555666653 3 5899999999999999864 444443
No 27
>PRK05101 galactokinase; Provisional
Probab=99.95 E-value=5.7e-26 Score=228.63 Aligned_cols=287 Identities=16% Similarity=0.147 Sum_probs=192.1
Q ss_pred cCCceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC----------CC-C----
Q 016716 68 EAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV----------PG-I---- 132 (384)
Q Consensus 68 ~~~~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~----------~~-l---- 132 (384)
|...+.+.++||||||| +|+|.| ||...+++++||+|+.|.+++.++. .+++.... .. +
T Consensus 15 fg~~p~~~~~APgRvnL----~GeH~D-y~gg~vL~~AId~~~~v~i~~~~~~-~i~v~s~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PRK05101 15 FGYPPTHTIQAPGRVNL----IGEHTD-YNDGFVLPCAIDYQTVISCAKRDDR-IVRVIAADYDNQQDEFSLDAPIVPHP 88 (382)
T ss_pred hCCCCCeEEECCceEEE----ecccee-ecCCEEEEEEecccEEEEEEECCCC-EEEEEECCCCCCceEEecCcccccCC
Confidence 34445588999999999 899999 9999999999999999999987653 23332211 00 1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---Cc
Q 016716 133 PVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---DI 209 (384)
Q Consensus 133 p~d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---Dv 209 (384)
...|.|++..+++.+..+.....|++|.|+++||+|+|||||||+++|++.|++++++.++++++|+++|.++|. ..
T Consensus 89 ~~~w~~yv~~~~~~l~~~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~ 168 (382)
T PRK05101 89 EQQWANYVRGVVKHLQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGC 168 (382)
T ss_pred CCchHHHHHHHHHHHHHhCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 123679999999999876555569999999999999999999999999999999999999999999999999883 23
Q ss_pred ce-------eecCC---eEEEccCCceeeeCCCCCCCCccEEEEcCCCCc-------chHH-----HHhhhccc---cCC
Q 016716 210 PF-------FFSHG---AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREAC-------PTAE-----VYKHLRLD---QTT 264 (384)
Q Consensus 210 p~-------~~~GG---~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~v-------sT~~-----a~~~l~~~---~~~ 264 (384)
|+ +..|| +.+.........+++ +|.++.++|++++... +|.. +.+.+... ...
T Consensus 169 ~~G~~Dq~~s~~G~~~~~~~~d~~~~~~~~~~--~~~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~ 246 (382)
T PRK05101 169 NCGIMDQLISALGKKDHALLIDCRSLETKAVP--MPEGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVT 246 (382)
T ss_pred CCccHHHHHHHcCCCCeEEEEEcCCCceEEee--CCCCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCC
Confidence 32 22343 233222222334444 3457899999999876 5553 22211110 000
Q ss_pred ---------CCC----------------HHHHHHHHHhCCCch--HHH-hc--cccccccccchHHHHHHHHHHHc-CCC
Q 016716 265 ---------KVD----------------PLTLLEQISRNGLSQ--DVC-IN--DLEAPAFQVLPSLKRLKQRIIAA-GRG 313 (384)
Q Consensus 265 ---------~~d----------------~~~ll~al~~~d~~~--~~~-~N--dLe~~~~~~~p~l~~l~~~l~~~-Ga~ 313 (384)
... ......+|.++|+.. ..| .+ .|+......+|+++.+++.+++. |+
T Consensus 247 ~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga- 325 (382)
T PRK05101 247 LEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGD- 325 (382)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCC-
Confidence 000 012345677777543 122 11 12211223589999999999996 86
Q ss_pred CCCceeeeccc--cceeEeccCCCccchhhcccccchhhhhhHHHh-hcCCceEEeccccC
Q 016716 314 QYDAVFMSGSG--STIVGIGSPDPPQFIYDDNEYEDVFLSEARFIT-REVNQWYRESASTN 371 (384)
Q Consensus 314 ~~~ga~mSGSG--~tvfal~~~~~a~~i~~~~~~~~~f~~~~~~~~-~~~~~w~~~~~~~~ 371 (384)
..|++|||+| +|++++++.+.++++.+.++. .+.-+ ...+.||....++.
T Consensus 326 -~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~-------~y~~~~~~~~~~~~~~~~~G 378 (382)
T PRK05101 326 -QGGVRMTGGGFGGCIVALVPEELVEAVRQAVAE-------QYEAKTGLKETFYVCKASQG 378 (382)
T ss_pred -cceEEeccCCCccEEEEEEcHHHHHHHHHHHHH-------HHHHhhCCCCeEEEEecCCC
Confidence 1478999985 799999998777666655331 11111 22357787665544
No 28
>PRK01123 shikimate kinase; Provisional
Probab=99.95 E-value=3.1e-26 Score=221.74 Aligned_cols=227 Identities=18% Similarity=0.173 Sum_probs=167.4
Q ss_pred cccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHH
Q 016716 104 HVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALW 183 (384)
Q Consensus 104 ~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~ 183 (384)
++||+|+++++++.+.. ..+.....++|.++.|++.++++.++++++...+++|+++++||.++|||||||+++|++.
T Consensus 25 ~~i~l~~~v~v~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~i~s~IP~~~GLGSSaA~~va~~~ 102 (282)
T PRK01123 25 FGIDLKTTATVELSDDG--GGIEGEISGNPDADTRLIERCVELVLERFGIDYGATVRTKSEIPLASGLKSSSAAANATVL 102 (282)
T ss_pred EEeccEEEEEEEECCCC--ceeeecccCCCCCCchHHHHHHHHHHHHhCCCCCEEEEEecCCCCCCCccHHHHHHHHHHH
Confidence 48999999999886542 3332222355666789999999999999988789999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHhhccc-----------CcceeecCCeEEEccCCce-eeeCCCCCCCCccEEEEcCCCCcch
Q 016716 184 AANQFNGCVATEKELQEWSSEIGS-----------DIPFFFSHGAAYCTGRGEV-VQDIPPPIPLDVPMVLIKPREACPT 251 (384)
Q Consensus 184 Aln~l~g~~ls~~eL~~la~~ie~-----------Dvp~~~~GG~a~~~g~Ge~-l~~l~~~~p~~~~ivIv~P~~~vsT 251 (384)
|++++++.++++++|+++|.++|. |+...++||+++....+.. +.+++ .++++++++|+..++|
T Consensus 103 a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~~~~~~~~~----~~~~~vv~~p~~~~~T 178 (282)
T PRK01123 103 ATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNREMKLLKRDE----VELDVLVLIPPEGAFS 178 (282)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCCceEEEEec----CCcEEEEEECCCCcch
Confidence 999999999999999999999653 4445557899887654332 22332 2488999999999999
Q ss_pred HHHHhhh-ccccCCCCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEe
Q 016716 252 AEVYKHL-RLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGI 330 (384)
Q Consensus 252 ~~a~~~l-~~~~~~~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal 330 (384)
.+++..+ +.. .+.. ..+...+..+++...+..|.+ .++..+.|. .+++..++++|+ +|+++||+||||+++
T Consensus 179 ~~~r~~~l~~~-~~~~--d~~~~~~~~~~l~~~~~~~~l-~~~~~l~~~-~~~i~~a~~~Ga---~ga~lSGaGptv~al 250 (282)
T PRK01123 179 ASADVERMKLI-APYV--DMAFELALDGEYFKAMTLNGL-LYSSALGFP-TEPALEALEAGA---VGVGLSGTGPSYVAI 250 (282)
T ss_pred hhhhhhhchhc-CcHH--HHHHHHHhhccHHHHHHhCCc-hhhhhhCCC-hHHHHHHHHCCC---eEEEEecCCCeEEEE
Confidence 9988774 432 2222 234444455555433333444 333345566 344555678898 899999999999999
Q ss_pred ccCCCccchhhccc
Q 016716 331 GSPDPPQFIYDDNE 344 (384)
Q Consensus 331 ~~~~~a~~i~~~~~ 344 (384)
++.++.+++.++++
T Consensus 251 ~~~~~~~~v~~~l~ 264 (282)
T PRK01123 251 VDEEDPEEVKEAWE 264 (282)
T ss_pred eCCCCHHHHHHHHH
Confidence 98766666665544
No 29
>PRK03817 galactokinase; Provisional
Probab=99.94 E-value=9e-26 Score=224.78 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=175.9
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---------CCCC--CCCChHHHH
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---------PGIP--VDDSNLIIK 142 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---------~~lp--~d~~Nli~k 142 (384)
|+++||+|+|| .|+|.| |..-..+.++|++|+.|++++.+. ..+.... ..++ .++.|++..
T Consensus 1 ~~~~APgrv~L----~Geh~d-~~~g~~l~~aI~~~~~v~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (351)
T PRK03817 1 MKVKSPGRVNL----IGEHTD-YNDGYVLPFAINLYTFLEIEKSEK---FIFYSENFNEEKTFELDKLEKLNSWADYIKG 72 (351)
T ss_pred CEEEeeeeEEE----ecccee-eCCCeEEEEEecCcEEEEEEeCCe---EEEEECCCCCcEEEeCCccCCCCchHHHHHH
Confidence 46789999999 788876 222224668999999999987531 2332111 1111 235678888
Q ss_pred HHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccC---cceeecCCeEE
Q 016716 143 ALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSD---IPFFFSHGAAY 219 (384)
Q Consensus 143 a~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~D---vp~~~~GG~a~ 219 (384)
++..+.++.....|++|+++++||.|+|||||||+++|++.|++++++.++++++|+++|.++|.+ +|..+.++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~ 152 (351)
T PRK03817 73 VIWVLEKRGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAV 152 (351)
T ss_pred HHHHHHHcCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhhe
Confidence 887776543334689999999999999999999999999999999999999999999999999975 55554556555
Q ss_pred EccCCce----------eeeCCCCCCCCccEEEEcCCCCc--chH----------HHHhhhccc---cCCC------CC-
Q 016716 220 CTGRGEV----------VQDIPPPIPLDVPMVLIKPREAC--PTA----------EVYKHLRLD---QTTK------VD- 267 (384)
Q Consensus 220 ~~g~Ge~----------l~~l~~~~p~~~~ivIv~P~~~v--sT~----------~a~~~l~~~---~~~~------~d- 267 (384)
+.|.++. ..++ ++|.++.+++++|+... +|. ++++.++.. .... ..
T Consensus 153 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 230 (351)
T PRK03817 153 AFGKKDHAIFLDTMTLEYEYV--PFPEDYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSKLPPL 230 (351)
T ss_pred eeccCCEEEEEecCCCceEEE--ecCCCcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHhCCHH
Confidence 5543221 1222 34567899999998543 321 333333210 0000 00
Q ss_pred --------------HHHHHHHHHhCCCch--HHHh---ccc-cccccccchHHHHHHHHHHHcCCCCCCceeeeccc--c
Q 016716 268 --------------PLTLLEQISRNGLSQ--DVCI---NDL-EAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSG--S 325 (384)
Q Consensus 268 --------------~~~ll~al~~~d~~~--~~~~---NdL-e~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~ 325 (384)
...++.++.++|+.. ..+. ..+ ++++. .+|+++++++.+++.|+ +|++|||+| +
T Consensus 231 ~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~-s~p~ld~l~~~a~~~Ga---lGaklsGaG~Gg 306 (351)
T PRK03817 231 LRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEV-SCEELDFFVEFALELGA---YGARLTGAGFGG 306 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHcCC---CEEEEecCCCCe
Confidence 013456788888753 2222 234 45666 49999999999999998 899999998 9
Q ss_pred ceeEeccCCCccchhhcc
Q 016716 326 TIVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 326 tvfal~~~~~a~~i~~~~ 343 (384)
||+++++++.++++.+.+
T Consensus 307 ~vlal~~~~~~~~~~~~l 324 (351)
T PRK03817 307 SAIALVDKGKFESIGEEL 324 (351)
T ss_pred EEEEEEchHHHHHHHHHH
Confidence 999999876666665543
No 30
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.93 E-value=3.1e-25 Score=212.54 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=162.4
Q ss_pred cccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHH
Q 016716 104 HVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALW 183 (384)
Q Consensus 104 ~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~ 183 (384)
.+|++++++++++.++. .+..... +..|++.++++.++++++.+.+++|+++++||.++|||||||+++|++.
T Consensus 19 ~aI~~~~~v~v~~~~~~---~~~~~~~----~~~n~i~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~ 91 (261)
T TIGR01920 19 FGIDLWVEAKVREGDEA---GVSTYVR----GNPRLIERILTAIRSKFGIVDGLEVEVESEIPAGSGLKSSSALVNALVE 91 (261)
T ss_pred EEccCceEEEEEECCCC---ceeeeec----CChHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHH
Confidence 67899999999987642 2222111 1349999999999999987789999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHhhccc-----------CcceeecCCeEEEccCCceeeeCCCCCCCCccEEEEcCCCCcchH
Q 016716 184 AANQFNGCVATEKELQEWSSEIGS-----------DIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTA 252 (384)
Q Consensus 184 Aln~l~g~~ls~~eL~~la~~ie~-----------Dvp~~~~GG~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~ 252 (384)
|++++++.++++++|.+++.++|. |+.++++||+++..+++..+.... +.| ++++++++|+..++|+
T Consensus 92 al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~~~~~~~~-~~~-~~~~vv~~p~~~~tt~ 169 (261)
T TIGR01920 92 AVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRRMKILKRD-KLE-GCTAAVLVPKEGERRE 169 (261)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCCceEEEec-CCC-CceEEEEECCCCcccc
Confidence 999999999999999999999764 344666799988877665443221 223 4589999999999997
Q ss_pred HH-HhhhccccCCCCCHHHHHHHHHhCCCchHHHhccccc-cccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEe
Q 016716 253 EV-YKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEA-PAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGI 330 (384)
Q Consensus 253 ~a-~~~l~~~~~~~~d~~~ll~al~~~d~~~~~~~NdLe~-~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal 330 (384)
++ ++.++.. . .....+...+..+++...+..|++.. .... ++ .++++.+++.|+ +|++|||+||||++|
T Consensus 170 ~~~~~~l~~~-~--~~~~~~~~~~~~~~l~~am~~n~~l~~~~lg-~~--~~~i~~a~~~Ga---lga~lSGaG~sv~aL 240 (261)
T TIGR01920 170 NVDLNRFRRI-S--PVVEEAFNLALRGEYLKAMVLNGVAYATALG-YP--LEPASKALEAGA---AAAGLSGKGPSYFAL 240 (261)
T ss_pred cccHHHhhhc-c--hHHHHHHHHHhhCCHHHHHhhChHHhHHhhC-CC--hHHHHHHHHcCC---cEEeecCCCCeEEEE
Confidence 77 5554432 1 12234566677777665555676532 1111 11 135577889998 899999999999999
Q ss_pred ccCCCccchhhccc
Q 016716 331 GSPDPPQFIYDDNE 344 (384)
Q Consensus 331 ~~~~~a~~i~~~~~ 344 (384)
+++. +++.+.++
T Consensus 241 ~~~~--~~v~~~~~ 252 (261)
T TIGR01920 241 TEDP--EEAAEALM 252 (261)
T ss_pred eCCH--HHHHHHHH
Confidence 8754 44554433
No 31
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.93 E-value=3.3e-24 Score=216.17 Aligned_cols=282 Identities=15% Similarity=0.137 Sum_probs=186.9
Q ss_pred ceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCC---------CCCC------C
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP---------GIPV------D 135 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~---------~lp~------d 135 (384)
...+.++||||+|| +|+|.| |+....+.++|++++.|.+++.++. .+.+..... ++|. .
T Consensus 15 ~p~~~~~APgrv~L----~GeH~d-y~g~~vl~~AI~~~~~v~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (386)
T TIGR00131 15 KPDFTARAPGRVNL----IGEHTD-YNDGSVLPCAIDFGTLCAVAVRDDK-NVRIYLANADNKFAERSLDLPLDGSEVSD 88 (386)
T ss_pred CCCEEEECCcceEe----ecccee-eCCceEEeeEeeccEEEEEEECCCC-eEEEEECCCCCcceEEECCCCCCCCCCCC
Confidence 34588899999999 899988 5556666799999999999987654 233322110 1222 2
Q ss_pred CChHHHHHHHHHHHHcCC-CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccC---cce
Q 016716 136 DSNLIIKALNLYRKKTES-DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSD---IPF 211 (384)
Q Consensus 136 ~~Nli~ka~~~~~~~~g~-~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~D---vp~ 211 (384)
|.|++..++..+++.... ..|++|.|+++||+|+|||||||.++|++.|++.+++.++++++|++++.++|.+ +|+
T Consensus 89 w~~y~~~~~~~~~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~ 168 (386)
T TIGR00131 89 WANYFKGVLHVAQERFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNC 168 (386)
T ss_pred cHhHHHHHHHHHHHhcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCc
Confidence 448899999988876553 3599999999999999999999999999999999999999999999999998853 433
Q ss_pred e-------ecCC---eEEEccCCceeeeCCCCCCC-CccEEEEcCCCCcchHHH-H-----------hhhccc-------
Q 016716 212 F-------FSHG---AAYCTGRGEVVQDIPPPIPL-DVPMVLIKPREACPTAEV-Y-----------KHLRLD------- 261 (384)
Q Consensus 212 ~-------~~GG---~a~~~g~Ge~l~~l~~~~p~-~~~ivIv~P~~~vsT~~a-~-----------~~l~~~------- 261 (384)
. .+|| +++..-..-...+++ +|. ++.++|++|+...+|++. | +.+...
T Consensus 169 g~~Dq~~s~~G~~~~~l~~~~~~~~~~~~~--~~~~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~ 246 (386)
T TIGR00131 169 GIMDQAASVLGKEDHALLVECRSLKATPFK--FPQLGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRD 246 (386)
T ss_pred chHHHHHHHhccCCcEEEEEcCCCceeeec--CCCCCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhh
Confidence 2 2333 222222221223333 444 689999999998887521 1 111100
Q ss_pred ----cCC-------CCC----------------HHHHHHHHHhCCCch--HHHhc---cc-cccccccchHHHHHHHHH-
Q 016716 262 ----QTT-------KVD----------------PLTLLEQISRNGLSQ--DVCIN---DL-EAPAFQVLPSLKRLKQRI- 307 (384)
Q Consensus 262 ----~~~-------~~d----------------~~~ll~al~~~d~~~--~~~~N---dL-e~~~~~~~p~l~~l~~~l- 307 (384)
... ... ...+..+|.++|+.. ..|.. .+ +++ ...+|+++.+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~-~vs~peld~lv~~a~ 325 (386)
T TIGR00131 247 FMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDY-ECTCPEIDELVCSAA 325 (386)
T ss_pred CCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhc-CCCCHHHHHHHHHHH
Confidence 000 000 013456777777654 22211 12 223 45699999888765
Q ss_pred HHcCCCCCCceeeeccc--cceeEeccCCCccchhhcccccchhhhhhHHHhhcCCceEEecccc
Q 016716 308 IAAGRGQYDAVFMSGSG--STIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESAST 370 (384)
Q Consensus 308 ~~~Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~ 370 (384)
+..|+ +|++|||+| +|++++++++.++++.++++.. | .......+.+|+...+.
T Consensus 326 ~~~GA---lGakltGaG~GG~vial~~~~~~~~v~~~~~~~--y----~~~~~~~~~~~~~~~~~ 381 (386)
T TIGR00131 326 LVNGS---GGSRMTGAGFGGCTVHLVPNENVDKVRQAVADK--Y----PKKTGLELTFYVIVSKP 381 (386)
T ss_pred hcCCC---cEEEEecCCCceEEEEEEcHHHHHHHHHHHHHH--H----HHhhCCCCcEEEEEECC
Confidence 66788 899999987 6999999977666666554321 1 11122335677766444
No 32
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.92 E-value=3.2e-24 Score=208.35 Aligned_cols=245 Identities=16% Similarity=0.199 Sum_probs=183.2
Q ss_pred EEEcceeEEecccccCccC--CCcccccccccccCcccEEEEEeCCCCCceEEEeeC--CC-CCCCC-ChHHHHHHHHHH
Q 016716 75 TLFSPCKINAFLRITNKRE--DGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV--PG-IPVDD-SNLIIKALNLYR 148 (384)
Q Consensus 75 ~v~aPAKiNL~L~I~g~~~--dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~--~~-lp~d~-~Nli~ka~~~~~ 148 (384)
+++||+|+-| .|+|. .||..|. ++|+++-+++++.+++. .+.+.... .. ++.++ ..++..+++.+.
T Consensus 2 ~~~aPgKliL----~GEHAVVyG~pAI~---~aI~~~~~v~~~~s~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 73 (307)
T COG1577 2 SVSAPGKLIL----FGEHAVVYGYPAIA---AAIDLRVTVTISESDSN-KIVIESSDLKSSTLERDEDEGYIQAAVRLAS 73 (307)
T ss_pred cccccccEEE----EecceeeeCCchhh---eeeeeeEEEEEEecCCC-cEEEeccCCCCccccccccchHHHHHHHHHH
Confidence 5789999999 69997 4887666 89999999999987653 24443221 11 22222 357777888888
Q ss_pred HHcCC--CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------cCcceeecCCe
Q 016716 149 KKTES--DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---------SDIPFFFSHGA 217 (384)
Q Consensus 149 ~~~g~--~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---------~Dvp~~~~GG~ 217 (384)
+..+. ..+++++|+++||+|+|||||||.++|++.|+++++|..++.+++.+++.+.| .|+.++.+||+
T Consensus 74 e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~~~~gg~ 153 (307)
T COG1577 74 ELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITYGGL 153 (307)
T ss_pred HHhcccCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCcccceEEEeCCE
Confidence 87773 46999999999999999999999999999999999999999999999999976 48889999999
Q ss_pred EEEccCCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC------------HHHHHHHHHhCCCch--H
Q 016716 218 AYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD------------PLTLLEQISRNGLSQ--D 283 (384)
Q Consensus 218 a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d------------~~~ll~al~~~d~~~--~ 283 (384)
++.... ..++++..++. . .++|.+.+...+|+++.+.+......... ..++..++..+|... .
T Consensus 154 v~~~~~-~~~~~l~~~~~-~-~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lge 230 (307)
T COG1577 154 VAFKKG-FDFEKLEIELL-G-TLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGE 230 (307)
T ss_pred EEEecC-CCccccccccC-C-eEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 887642 34555654432 2 68999999999999888776653211111 013445666666432 1
Q ss_pred -HH-hccccccccccchHHHHHHHHHHHcCCCCCCceeeeccc--cceeEeccC
Q 016716 284 -VC-INDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSG--STIVGIGSP 333 (384)
Q Consensus 284 -~~-~NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal~~~ 333 (384)
+- .+.|........|+++++++.+++.|+ .|+++||+| .|+++++.+
T Consensus 231 lm~~nq~LL~~LgVs~~~L~~lv~~a~~~Ga---~gaKlTGAGgGGc~IaL~~~ 281 (307)
T COG1577 231 LMNINQGLLKALGVSTPELDELVEAARSLGA---LGAKLTGAGGGGCIIALAKN 281 (307)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHhcCc---cccccccCCCCceEEEEecc
Confidence 11 223333334568999999999999998 799999985 899999986
No 33
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.92 E-value=1.5e-24 Score=208.16 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=164.9
Q ss_pred cceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCC-----CC---CCCChHHHHHHHHHHH
Q 016716 78 SPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPG-----IP---VDDSNLIIKALNLYRK 149 (384)
Q Consensus 78 aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~-----lp---~d~~Nli~ka~~~~~~ 149 (384)
||||+|| +|+|.|-| .-..+.++||.|..+.+.+.++. ..+...... .+ ..+.+++..+++.+.+
T Consensus 1 aPgkv~L----~GEH~v~~-g~~al~~aI~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 73 (273)
T TIGR00549 1 APGKIIL----FGEHAVVY-GEPAIAAPIPLRTTVTVIESSDG--SFIESDLGRGSLDDAPQELDGLVSYIAEALSYFSE 73 (273)
T ss_pred CCceEEE----EecChhcc-CCCeeEEEecccEEEEEEEcCCC--ceEeccccCCcHhHhhHHHHHHHHHHHHHHHHhhc
Confidence 7999999 79998622 22345589999999999876542 233222111 11 1134667777766653
Q ss_pred HcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------cCcceeecCCeEEE
Q 016716 150 KTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---------SDIPFFFSHGAAYC 220 (384)
Q Consensus 150 ~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---------~Dvp~~~~GG~a~~ 220 (384)
. + ..+++|+++++||.|+|||||||+++|++.|++++++.++++++|.++|.++| .|.+++.+||+++.
T Consensus 74 ~-~-~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~Gg~~~~ 151 (273)
T TIGR00549 74 L-N-PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTATSTYGGPVYF 151 (273)
T ss_pred c-C-CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhcCCeEEE
Confidence 2 1 23599999999999999999999999999999999999999999999999975 47878888998876
Q ss_pred cc-CCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCC---C---------HHHHHHHHHhCCCch--HHH
Q 016716 221 TG-RGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKV---D---------PLTLLEQISRNGLSQ--DVC 285 (384)
Q Consensus 221 ~g-~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~---d---------~~~ll~al~~~d~~~--~~~ 285 (384)
.. .+. .++..+ .++++++++|+...+|+++++.++....... + ...+..+|.++|+.. ..+
T Consensus 152 ~~~~~~--~~~~~~--~~~~lvl~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~l~ 227 (273)
T TIGR00549 152 EKGEGE--FTKLIS--LDGYFVIADTGVSGSTKEAVARVRQLLERFPELIDSIMDAIGELTLEAKAALQDGDVESLGELM 227 (273)
T ss_pred EcCCCc--eeeccC--CCeEEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 43 332 223222 3578999999999999999876543211111 0 012356777777653 222
Q ss_pred h---ccccccccccchHHHHHHHHHHHcCCCCCCceeeeccc--cceeEe
Q 016716 286 I---NDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSG--STIVGI 330 (384)
Q Consensus 286 ~---NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal 330 (384)
. +.++.. ...+|+++++++.+++.|+ +|++|||+| .|+++|
T Consensus 228 ~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga---~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 228 NINQGLLKAL-GVSHPKLDQLVETARKAGA---LGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHHHCCC---ceeeeccCCCCceEEeC
Confidence 1 123332 3359999999999999998 899999997 566653
No 34
>PRK05322 galactokinase; Provisional
Probab=99.92 E-value=1.6e-23 Score=211.20 Aligned_cols=293 Identities=17% Similarity=0.135 Sum_probs=190.2
Q ss_pred HHHHhhcc-cCCceeEEEEcceeEEecccccCccCC--CcccccccccccCcccEEEEEeCCCCCceEEEeeC-------
Q 016716 60 KLADEVDR-EAPLSRLTLFSPCKINAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV------- 129 (384)
Q Consensus 60 ~~~~~~~~-~~~~~~~~v~aPAKiNL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~------- 129 (384)
++.+.+.+ |...+...++||+|+|| +|+|.| |+..| ..+|+++..+.+++.++. .+++....
T Consensus 5 ~~~~~f~~~fg~~p~~~~~APgRv~L----~GEH~d~~g~~vl---~~AI~~~~~v~~~~~~~~-~i~i~s~~~~~~~~~ 76 (387)
T PRK05322 5 ELKKKFAEVFGEEAEDVFFSPGRINL----IGEHTDYNGGHVF---PAAITLGTYGAARKRDDK-KVRLYSANFEDLGII 76 (387)
T ss_pred HHHHHHHHHhCCCCceEEEcCceeEe----cccceeecCceee---eeeccceEEEEEEECCCC-EEEEEECCCCCCceE
Confidence 34444333 33344577899999999 799987 44444 489999999999887653 23332111
Q ss_pred ----CCCC----CCCChHHHHHHHHHHHHcC-CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHH
Q 016716 130 ----PGIP----VDDSNLIIKALNLYRKKTE-SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQE 200 (384)
Q Consensus 130 ----~~lp----~d~~Nli~ka~~~~~~~~g-~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~ 200 (384)
.++. ..|.|++..++..+.+... ...|++|.|+++||.|+|||||||..+|++.|++++++.++++++|++
T Consensus 77 ~~~~~~~~~~~~~~w~~y~~gvi~~l~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~ 156 (387)
T PRK05322 77 EFDLDDLSFDKEDDWANYPKGVLKFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVK 156 (387)
T ss_pred EEeccccCCCCccchHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 1111 1256788888887765432 236999999999999999999999999999999999999999999999
Q ss_pred HHhhcccC---cce-------eecCC---eEEEccCCceeeeCCCCCCCCccEEEEcCCCCcchH------------HHH
Q 016716 201 WSSEIGSD---IPF-------FFSHG---AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTA------------EVY 255 (384)
Q Consensus 201 la~~ie~D---vp~-------~~~GG---~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~------------~a~ 255 (384)
+|.++|.+ +|+ ..+|| ..+..-.......++.++ .++.++|++.+...+|. ++.
T Consensus 157 ~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~-~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~ 235 (387)
T PRK05322 157 LGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDL-GDYVIVIMNTNKRRELADSKYNERRAECEKAL 235 (387)
T ss_pred HHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCC-CCeEEEEEECCCccccCcchhhHHHHHHHHHH
Confidence 99999842 332 23343 333322221233343332 35679999999877654 666
Q ss_pred hhhcccc-C------C---------CC-C----------------HHHHHHHHHhCCCch--HHHhc---cc-ccccccc
Q 016716 256 KHLRLDQ-T------T---------KV-D----------------PLTLLEQISRNGLSQ--DVCIN---DL-EAPAFQV 296 (384)
Q Consensus 256 ~~l~~~~-~------~---------~~-d----------------~~~ll~al~~~d~~~--~~~~N---dL-e~~~~~~ 296 (384)
+.+.... . . .. + ...+..+|..+|+.. ..|.. .| ++++..
T Consensus 236 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s- 314 (387)
T PRK05322 236 EELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVT- 314 (387)
T ss_pred HHHhhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCC-
Confidence 5543210 0 0 00 0 012345677777543 22322 35 567775
Q ss_pred chHHHHHHHHHH-HcCCCCCCceeeecccc--ceeEeccCCCccchhhcccccchhhhhhHHHhhcCCceEEeccccC
Q 016716 297 LPSLKRLKQRII-AAGRGQYDAVFMSGSGS--TIVGIGSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTN 371 (384)
Q Consensus 297 ~p~l~~l~~~l~-~~Ga~~~~ga~mSGSG~--tvfal~~~~~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~~ 371 (384)
+|+++++++.++ ..|+ +|++|||+|+ |++++++.+..+.+.+.++.. +..-....+.+|....++.
T Consensus 315 ~~eld~lv~~a~~~~Ga---~garlsGaG~GG~vial~~~~~~~~~~~~l~~~------y~~~~~~~~~~~~~~~~~G 383 (387)
T PRK05322 315 GLELDTLVEAAWKQEGV---LGARMTGAGFGGCAIAIVKKDKVEAFKENVGKA------YEEKIGYAASFYVAEIGDG 383 (387)
T ss_pred CHhHHHHHHHHHhcCCc---cEEEEecCCCceEEEEEEcHHHHHHHHHHHHHH------HHHhcCCCCcEEEEecCCC
Confidence 499999999986 5688 8999999987 999999877666665553211 1111123367777665544
No 35
>PRK00555 galactokinase; Provisional
Probab=99.91 E-value=4.7e-23 Score=206.15 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=172.4
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---------CCCC---CCCChHHH
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---------PGIP---VDDSNLII 141 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---------~~lp---~d~~Nli~ 141 (384)
++++||||+|| +|+|.|-|... .+.++|+.+..|.+++.++. .+.+.... ...+ ..|.|++.
T Consensus 3 ~~~~APGRv~L----iGEH~dy~~g~-vl~~Ai~~~~~v~~~~~~~~-~i~i~s~~~~~~~~~~~~~~~~~~~~w~~y~~ 76 (363)
T PRK00555 3 VRYAAPGRINL----IGEHTDYNLGF-ALPIALPQRTVVTFTPEHTD-AITASSDRADGSARIPLDTTPGQVTGWAAYAA 76 (363)
T ss_pred EEEEcCceEEe----ecccccCCCCe-EEeEEeeccEEEEEEECCCC-EEEEEECCCCCceEEecCCCCCCCcchHHHHH
Confidence 67789999999 89998844333 56689999999999987754 23332211 0111 23678888
Q ss_pred HHHHHHHHHcCCC-CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc----------Ccc
Q 016716 142 KALNLYRKKTESD-NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS----------DIP 210 (384)
Q Consensus 142 ka~~~~~~~~g~~-~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~----------Dvp 210 (384)
.++..+.+. +.. .|++|.|+++||+|+|||||||..+|++.|+++++|.++++++|+++|.++|. |-.
T Consensus 77 gv~~~l~~~-g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~ 155 (363)
T PRK00555 77 GVIWALRGA-GHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQL 155 (363)
T ss_pred HHHHHHHHc-CCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHH
Confidence 777777654 543 69999999999999999999999999999999999999999999999999883 322
Q ss_pred eeecCCe---EEEccCCceeeeCCCCCC-CCccEEEEcCCCCcchH--------H----HHhhhccccCCC---------
Q 016716 211 FFFSHGA---AYCTGRGEVVQDIPPPIP-LDVPMVLIKPREACPTA--------E----VYKHLRLDQTTK--------- 265 (384)
Q Consensus 211 ~~~~GG~---a~~~g~Ge~l~~l~~~~p-~~~~ivIv~P~~~vsT~--------~----a~~~l~~~~~~~--------- 265 (384)
+..+||. .+..-....+.+++.+.. .++.+++++++....|. + +.+.+.......
T Consensus 156 as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~ 235 (363)
T PRK00555 156 AALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAAL 235 (363)
T ss_pred HHHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHH
Confidence 3345543 332222223444443211 23468899887766532 1 111111000000
Q ss_pred ---CC----------------HHHHHHHHHhCCCch-HHHhccc-ccccc---ccchHHHHHHHHHHHcCCCCCCceeee
Q 016716 266 ---VD----------------PLTLLEQISRNGLSQ-DVCINDL-EAPAF---QVLPSLKRLKQRIIAAGRGQYDAVFMS 321 (384)
Q Consensus 266 ---~d----------------~~~ll~al~~~d~~~-~~~~NdL-e~~~~---~~~p~l~~l~~~l~~~Ga~~~~ga~mS 321 (384)
.+ ...+..+|..+|+.. ..+.|.. ++.+. ..+|+++.+++.+++.|+ +|++||
T Consensus 236 ~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga---~Gakls 312 (363)
T PRK00555 236 GAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGA---LGARMT 312 (363)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCC---eEEEEC
Confidence 00 012356777777643 2222232 22332 237999999999999998 899999
Q ss_pred cc--ccceeEeccCCCccchhhccc
Q 016716 322 GS--GSTIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 322 GS--G~tvfal~~~~~a~~i~~~~~ 344 (384)
|+ |+|++++++.+.++++.+.++
T Consensus 313 GaG~Gg~vial~~~~~~~~~~~~l~ 337 (363)
T PRK00555 313 GGGFGGCVIALVPADRAEDVADTVR 337 (363)
T ss_pred CCCccCeEEEEEchhHHHHHHHHHH
Confidence 99 599999998766666665533
No 36
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=9.5e-22 Score=193.55 Aligned_cols=275 Identities=19% Similarity=0.227 Sum_probs=185.0
Q ss_pred chHHHHHHHHhhcccCCceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEe-eC---
Q 016716 54 PDERRNKLADEVDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLST-NV--- 129 (384)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~-~~--- 129 (384)
+.|++.++-.+.-++ -.+..+.+|||++|| +|+|.| |-....+.++|++...+.+++.++. .+++.. +.
T Consensus 5 ~~~~~~~~f~~~f~~-~~~~~~~~aPGRvNL----IGEHtD-Yn~G~VlP~Ain~~t~v~v~~r~d~-~v~l~s~n~~~~ 77 (390)
T COG0153 5 LKEKLQALFAEHFGY-VEPTVTAFAPGRVNL----IGEHTD-YNGGFVLPCAINYGTYVAVAKRDDG-KVRLYSANFGNA 77 (390)
T ss_pred HHHHHHHHHHHHhcc-cCcceEecCCceEEe----ecccee-ccCceEEEEEeecceEEEEEEccCc-eEEEEeCCCccc
Confidence 445666655554333 335588999999999 999986 3333344599999999999987764 233321 11
Q ss_pred -------CCC-C---CCCChHHHHHHHHHHHHcCC-CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHH
Q 016716 130 -------PGI-P---VDDSNLIIKALNLYRKKTES-DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKE 197 (384)
Q Consensus 130 -------~~l-p---~d~~Nli~ka~~~~~~~~g~-~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~e 197 (384)
.++ + .+|.|++..++..+++. |. -.|+++.|.++||.|+||+||||..+|++.++.++++.++++.+
T Consensus 78 ~~~~~~~~d~~~~~~~~W~nYvkgvi~~l~~~-g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~ 156 (390)
T COG0153 78 GDIFFLLLDIAKEKIDDWANYVKGVIKALQKR-GYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAE 156 (390)
T ss_pred cceeecchhhcccccchhhhhHHHHHHHHHhc-CCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHH
Confidence 111 1 25889998877777654 44 36999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccC---cceeecCCeEEEccCC----------ceeeeCCCCCCCCccEEEEcCCCCcch------------H
Q 016716 198 LQEWSSEIGSD---IPFFFSHGAAYCTGRG----------EVVQDIPPPIPLDVPMVLIKPREACPT------------A 252 (384)
Q Consensus 198 L~~la~~ie~D---vp~~~~GG~a~~~g~G----------e~l~~l~~~~p~~~~ivIv~P~~~vsT------------~ 252 (384)
|++++.+.|.+ +++.+.+.++...|.. -..++++.|. .++.+||++.+++..+ .
T Consensus 157 la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~~~~~~p~-~~~~ivI~ns~vkr~la~seYn~Rr~ece 235 (390)
T COG0153 157 LAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPV-GGVSIVIVNSNVKRELADSEYNERRAECE 235 (390)
T ss_pred HHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCceEEeccCc-cceEEEEecCCCccccchhHHHHHHHHHH
Confidence 99999999954 6666555444433321 1234444332 2378899998874321 2
Q ss_pred HHHhhhcc--ccC--------------CCCCH----------------HHHHHHHHhCCCch---------HHHhccccc
Q 016716 253 EVYKHLRL--DQT--------------TKVDP----------------LTLLEQISRNGLSQ---------DVCINDLEA 291 (384)
Q Consensus 253 ~a~~~l~~--~~~--------------~~~d~----------------~~ll~al~~~d~~~---------~~~~NdLe~ 291 (384)
++.+.+.. ... -..++ .+...+|.++|+.. ..+.+|+|
T Consensus 236 ~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddye- 314 (390)
T COG0153 236 EAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYE- 314 (390)
T ss_pred HHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-
Confidence 33333322 000 00011 12345677777543 12333433
Q ss_pred cccccchHHHHHHHHHHHc-CCCCCCceeeeccc--cceeEeccCCCccchhhccc
Q 016716 292 PAFQVLPSLKRLKQRIIAA-GRGQYDAVFMSGSG--STIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 292 ~~~~~~p~l~~l~~~l~~~-Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~~~~~ 344 (384)
..+|+++.+++.+... |+ +|++|||+| +|+++|.+++.++.+.+++.
T Consensus 315 ---vt~pElD~lve~a~~~~G~---~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~ 364 (390)
T COG0153 315 ---VTCPELDTLVEIALAAGGA---YGARMTGAGFGGCVIALVPNDDVEAVAEAVA 364 (390)
T ss_pred ---ccchhHHHHHHHHHHcCCc---ccceecCCCCCceEEEEechhhHHHHHHHHH
Confidence 2489999999999754 44 899999974 89999999988887777643
No 37
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.89 E-value=5.8e-22 Score=197.99 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=176.0
Q ss_pred EEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCC------------CC----C--CCC
Q 016716 75 TLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP------------GI----P--VDD 136 (384)
Q Consensus 75 ~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~------------~l----p--~d~ 136 (384)
.+.||||+|| .|+|.+-|+.-..|.++|+.|.++++++.++. ...+.+... .+ + .++
T Consensus 2 ~~~APGKl~L----~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~-~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01220 2 VVHAPGKLFV----AGEYAVVEPGNPAILVAVDRFVTVTVEDADGA-ADVIISSDLGPQPVGWRRHDGRLVVRDPDARSA 76 (358)
T ss_pred eeecceeEEE----eeeEEEecCCCeEEEEEEcCcEEEEEEeCCCC-ceEEEecCCCCCceEEEecCCceeecccccccc
Confidence 5689999999 79997533222334489999999999887643 223322110 00 1 134
Q ss_pred ChHHHHHHHHHHHHc---CCC-CcEEEEEeecCCCC----CCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc--
Q 016716 137 SNLIIKALNLYRKKT---ESD-NFFWIHLDKKVPSG----AGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG-- 206 (384)
Q Consensus 137 ~Nli~ka~~~~~~~~---g~~-~g~~I~I~k~IP~g----aGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie-- 206 (384)
-+++..+++.+.+.+ +.. ++++++|+++||++ +|||||||.++|++.|++++++.++++++|.++|.+.|
T Consensus 77 ~~~v~~~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~ 156 (358)
T TIGR01220 77 LAYVVSAIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAE 156 (358)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhh
Confidence 578888887765443 333 58999999999995 69999999999999999999999999999999998865
Q ss_pred -------cCcceeecCCeEEEccCC-----------------------ceeeeCCCCCCCCccEEEEcCCCCcchHHHHh
Q 016716 207 -------SDIPFFFSHGAAYCTGRG-----------------------EVVQDIPPPIPLDVPMVLIKPREACPTAEVYK 256 (384)
Q Consensus 207 -------~Dvp~~~~GG~a~~~g~G-----------------------e~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~ 256 (384)
.|+.+..+||+++....+ ..+++++ .|.++++++++++...+|+++.+
T Consensus 157 ~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~--~~~~~~l~v~~tg~~~~T~~~v~ 234 (358)
T TIGR01220 157 LQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLP--APKGLTLLIGWTGSPASTASLVS 234 (358)
T ss_pred hCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECC--CCCCCEEEEEeCCCCcCcHHHHH
Confidence 366667778876543211 1234444 34578999999999999999887
Q ss_pred hhccccCCCCCH------------HHHHHHHHhCCCch--HHH-hc-cc-cc-----cccccchHHHHHHHHHHHcCCCC
Q 016716 257 HLRLDQTTKVDP------------LTLLEQISRNGLSQ--DVC-IN-DL-EA-----PAFQVLPSLKRLKQRIIAAGRGQ 314 (384)
Q Consensus 257 ~l~~~~~~~~d~------------~~ll~al~~~d~~~--~~~-~N-dL-e~-----~~~~~~p~l~~l~~~l~~~Ga~~ 314 (384)
.+........+. ..+..+|..+|+.. ..+ .| .+ +. ......|.++++++.+++.|+
T Consensus 235 ~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga-- 312 (358)
T TIGR01220 235 DVHRRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGG-- 312 (358)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCc--
Confidence 665432111110 12456777777543 111 11 11 11 113348999999999999885
Q ss_pred CCceeeeccc--cceeEeccC-CCccchhhccc
Q 016716 315 YDAVFMSGSG--STIVGIGSP-DPPQFIYDDNE 344 (384)
Q Consensus 315 ~~ga~mSGSG--~tvfal~~~-~~a~~i~~~~~ 344 (384)
|+++||+| .|+++++.+ +.++.+.++++
T Consensus 313 --~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~ 343 (358)
T TIGR01220 313 --AAKPSGAGGGDCGIAILDAEADITHVRQRWE 343 (358)
T ss_pred --eecCCCCCCcCEEEEEeCCchhHHHHHHHHH
Confidence 79999986 789999976 34555555544
No 38
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.87 E-value=2.4e-21 Score=183.08 Aligned_cols=245 Identities=15% Similarity=0.090 Sum_probs=168.1
Q ss_pred EEEEcceeEEecccc-cCccCCCccccccccccc-CcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHc
Q 016716 74 LTLFSPCKINAFLRI-TNKREDGFHDLASLFHVI-SLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKT 151 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I-~g~~~dGyh~L~sl~~~I-~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~ 151 (384)
+++.+|++++++|.. .|.++.=|-.++ .++ ..+-+|+++++.+ +.. +......++.+.++..+
T Consensus 2 v~v~tpSrlH~gliDl~G~~GRv~GgvG---~aLe~P~l~i~~~~s~~---~~~---------~ge~~~~~~~~~a~~~l 66 (312)
T COG1907 2 VRVRTPSRLHAGLIDLNGSIGRVDGGVG---LALEEPRLEIEAKPSDD---IEV---------DGEDRRERVEKAARLVL 66 (312)
T ss_pred eEEecCceeeeccccCCCcccceeccee---EEeeCCceEEEEecccc---ccc---------cchhhHHHHHHHHHHhh
Confidence 789999999998866 455542222344 556 4477777765521 121 11222244444444444
Q ss_pred CCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---cCcceeecCCeEEEccCCcee-
Q 016716 152 ESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---SDIPFFFSHGAAYCTGRGEVV- 227 (384)
Q Consensus 152 g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---~Dvp~~~~GG~a~~~g~Ge~l- 227 (384)
....+++|+|.+.||.+.||||+++.++|+..|+++++|+.++.+||+....+.+ ..+.+|-.||+++..|.-...
T Consensus 67 e~~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~afe~GGFIVDGGh~~~f~ 146 (312)
T COG1907 67 EVGEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGVYAFEYGGFIVDGGHSFGFL 146 (312)
T ss_pred cccCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeEEEEEECCEEEECCcccCcc
Confidence 4447899999999999999999999999999999999999999999999988865 368889999999998743321
Q ss_pred ----e--eCCCCCCCCccEEEEcCCCCc--c---hHHHHhhhccccC------CCCCHHHHHHHHHhCCCch-HHHhccc
Q 016716 228 ----Q--DIPPPIPLDVPMVLIKPREAC--P---TAEVYKHLRLDQT------TKVDPLTLLEQISRNGLSQ-DVCINDL 289 (384)
Q Consensus 228 ----~--~l~~~~p~~~~ivIv~P~~~v--s---T~~a~~~l~~~~~------~~~d~~~ll~al~~~d~~~-~~~~NdL 289 (384)
. ..+..+|++|++|+++|+... . ..++++.+..... ++.-.+.++.++.++|+.. ....|++
T Consensus 147 ps~~sP~I~R~dfPedW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~vLm~mmPavvE~Die~fg~~l~~i 226 (312)
T COG1907 147 PSSASPLIFRLDFPEDWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHRVLMKMMPAVVERDIESFGEALNEI 226 (312)
T ss_pred cCCCCceeeeecCCCceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHhhCHHHHHHHHHHH
Confidence 1 124467889999999998542 2 2344444332211 1111246788999998764 1122222
Q ss_pred cccc---------cccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCCCcc
Q 016716 290 EAPA---------FQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQ 337 (384)
Q Consensus 290 e~~~---------~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~ 337 (384)
|... ...++.++++++.+.++ + +++.||.||||||+++++..+.
T Consensus 227 Q~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a---~~agqSSwGPtvY~i~d~~~~~ 279 (312)
T COG1907 227 QELGGKWFKKVEGGLQREDVKEIVDEMVEA-A---YGAGQSSWGPTVYGIVDSREAG 279 (312)
T ss_pred HHHHhhhhhhhhceeccHHHHHHHHHHHHh-c---ccccccccCCEEEEeccccccc
Confidence 2211 22368899999999988 5 7999999999999999986533
No 39
>PLN02521 galactokinase
Probab=99.86 E-value=1.2e-20 Score=195.04 Aligned_cols=185 Identities=17% Similarity=0.165 Sum_probs=128.3
Q ss_pred hHHHHHHHHhhcccCCc-eeEEEEcceeEEecccccCccCC--CcccccccccccCcccEEEEEeCCCCCceEEEeeC--
Q 016716 55 DERRNKLADEVDREAPL-SRLTLFSPCKINAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV-- 129 (384)
Q Consensus 55 ~~~~~~~~~~~~~~~~~-~~~~v~aPAKiNL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~-- 129 (384)
.+|+++|.+.+.+.++. +.+.++||||+|| +|+|.| ||..|. ++|+++..|.+++.++...+++....
T Consensus 29 ~~r~~~l~~~F~~~fg~~p~~~~~APGRVnL----iGEHtDy~gg~vLp---~AI~~~~~v~~~~~~~~~~i~i~s~~~~ 101 (497)
T PLN02521 29 RLRYARLKAAFVEVYGAKPDLFARSPGRVNL----IGEHIDYEGYSVLP---MAIRQDTIVAIRRAEGSKKLRIANVNDK 101 (497)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCceEEE----eccceeecCCeEEE---EEEcCcEEEEEEEcCCCCEEEEEECCCC
Confidence 44888888886554444 4578899999999 899987 555444 89999999999987652123332111
Q ss_pred --------CC-----CC-CCCChHHH----HHHHHHHHHcC---CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHh
Q 016716 130 --------PG-----IP-VDDSNLII----KALNLYRKKTE---SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQF 188 (384)
Q Consensus 130 --------~~-----lp-~d~~Nli~----ka~~~~~~~~g---~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l 188 (384)
.. .+ .+|.|++. .+++.+.+... ...|+++.|+++||+|+|||||||.++|++.|++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~ 181 (497)
T PLN02521 102 YTTCTFPADPDQEVDLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAA 181 (497)
T ss_pred CCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 00 01 23678884 44444444321 124999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHhhcccC---------cceeecC--CeEE-EccCCceeeeCCCCCCCCccEEEEcCCCC
Q 016716 189 NGCVATEKELQEWSSEIGSD---------IPFFFSH--GAAY-CTGRGEVVQDIPPPIPLDVPMVLIKPREA 248 (384)
Q Consensus 189 ~g~~ls~~eL~~la~~ie~D---------vp~~~~G--G~a~-~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~ 248 (384)
++.++++++|+++|.++|.. ..+...| |.++ ..-+.-.+++++ +|.++.+||++|.+.
T Consensus 182 ~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~--~p~~~~~vv~~s~v~ 251 (497)
T PLN02521 182 LGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQ--LPAGGTFVIANSLAE 251 (497)
T ss_pred hCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEee--cCCCcEEEEEECCCc
Confidence 99999999999999999853 2222233 3332 222222234444 456789999998843
No 40
>PLN02677 mevalonate kinase
Probab=99.85 E-value=2.6e-20 Score=187.20 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=160.1
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCC-CceEEEeeCCCCC------------------
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLK-SRDRLSTNVPGIP------------------ 133 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~-~~~~l~~~~~~lp------------------ 133 (384)
.+.++||+|+|| .|+|.+ |+.-..+.++||+|.++.+++.+.. ....+.....+++
T Consensus 2 ~i~v~apgk~~l----~Geh~~-~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~ 76 (387)
T PLN02677 2 EVKARAPGKIIL----AGEHAV-VHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLG 76 (387)
T ss_pred ceEEeCCccEEE----eeeeee-ecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhcccc
Confidence 378899999999 699986 2233345589999999999864210 0112221111111
Q ss_pred ----CCCChHHHHHHHHHHHHc---CCC-----------------------CcEEEEEeecCCCCCCCCchHHHHHHHHH
Q 016716 134 ----VDDSNLIIKALNLYRKKT---ESD-----------------------NFFWIHLDKKVPSGAGLGGGSSNAATALW 183 (384)
Q Consensus 134 ----~d~~Nli~ka~~~~~~~~---g~~-----------------------~g~~I~I~k~IP~gaGLGSSSA~aaA~l~ 183 (384)
.+...++..+++.+.+.. +.+ .+++|+|+++||+|+|||||||.++|++.
T Consensus 77 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~ 156 (387)
T PLN02677 77 TPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSA 156 (387)
T ss_pred ccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHH
Confidence 001123333333333222 221 36899999999999999999999999999
Q ss_pred HHHHhhC-CCC----------C---HHHHHHHHhhcc---------cCcceeecCCeEEEccCCceeeeCCCCCCCCccE
Q 016716 184 AANQFNG-CVA----------T---EKELQEWSSEIG---------SDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPM 240 (384)
Q Consensus 184 Aln~l~g-~~l----------s---~~eL~~la~~ie---------~Dvp~~~~GG~a~~~g~Ge~l~~l~~~~p~~~~i 240 (384)
|++.+++ +.+ + .+++.++|...| .|..+..+||++.... ++ +++++. +.++++
T Consensus 157 AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~-~~-~~~l~~--~~~l~l 232 (387)
T PLN02677 157 ALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKS-GE-LTRLQS--NMPLKM 232 (387)
T ss_pred HHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcC-CC-ceecCC--CCCceE
Confidence 9999998 332 2 357778888765 3666777888776643 32 455543 346889
Q ss_pred EEEcCCCCcchHHHHhhhccccCCCCCH------------HHHHHHHHh--CC-------Cch--HHH--hccccccccc
Q 016716 241 VLIKPREACPTAEVYKHLRLDQTTKVDP------------LTLLEQISR--NG-------LSQ--DVC--INDLEAPAFQ 295 (384)
Q Consensus 241 vIv~P~~~vsT~~a~~~l~~~~~~~~d~------------~~ll~al~~--~d-------~~~--~~~--~NdLe~~~~~ 295 (384)
+|++.+++.+|+++.+.+.......++. .++..++.+ +| +.. ..| .++|-.....
T Consensus 233 lv~dTgv~~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGV 312 (387)
T PLN02677 233 LITNTRVGRNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGV 312 (387)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998886542222211 123455554 22 211 111 2233222335
Q ss_pred cchHHHHHHHHHHHcCCCCCCceeeeccc--cceeEeccC
Q 016716 296 VLPSLKRLKQRIIAAGRGQYDAVFMSGSG--STIVGIGSP 333 (384)
Q Consensus 296 ~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal~~~ 333 (384)
..|.|+++++.+.+.| .++++||+| .|+++|.++
T Consensus 313 S~~~le~iv~~a~~~~----~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 313 SHSSIETVLRTTLKYK----LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred CcHHHHHHHHHHHHcC----CccccccCCCCCEEEEEccc
Confidence 6899999999998875 589999985 899999875
No 41
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=1e-19 Score=170.48 Aligned_cols=231 Identities=18% Similarity=0.194 Sum_probs=164.3
Q ss_pred cccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHH
Q 016716 104 HVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALW 183 (384)
Q Consensus 104 ~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~ 183 (384)
..|||..+++++++++. . ..+.|..+.+++.++++.+++++|+..+++++++++||.++||.||||.+.|++.
T Consensus 25 fgidL~v~a~v~~~~~~---~----~~~~~~~d~~li~~~~~~v~e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~ 97 (278)
T COG1685 25 FGIDLKVEAEVRLSDEG---K----VRGEPEGDTRLIERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVK 97 (278)
T ss_pred eeecceEEEEEEEcCcc---c----cccCCCCChHHHHHHHHHHHHHcCCCcceEEEEecCCCcccCcchhHHHHHHHHH
Confidence 57899999999887532 1 1223444678999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHhhccc-----------CcceeecCCeEEEccCCceeeeCCCCCCCCccEEEEcCCCCcchH
Q 016716 184 AANQFNGCVATEKELQEWSSEIGS-----------DIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTA 252 (384)
Q Consensus 184 Aln~l~g~~ls~~eL~~la~~ie~-----------Dvp~~~~GG~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~ 252 (384)
|+.++.|.++++.+++.++.++-. |..+.++||.++..++...+.... ..| +++++|+.|+....|+
T Consensus 98 A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iTDN~~m~Ilrr~-~~~-~~~vlI~~p~~k~~~~ 175 (278)
T COG1685 98 AVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVITDNRKMRILRRL-DLP-ELTVLILAPGEKRLSA 175 (278)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCCeEEecchhheehhcc-ccC-CceEEEEecCCccccc
Confidence 999999999999999999888531 455666799999999876654332 333 6899999999887776
Q ss_pred HHH-hhhccccCCCCCHHHHHHHHHhCCCchHHHhccc-cccccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEe
Q 016716 253 EVY-KHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDL-EAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGI 330 (384)
Q Consensus 253 ~a~-~~l~~~~~~~~d~~~ll~al~~~d~~~~~~~NdL-e~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal 330 (384)
++. +.++. +. .-.....+.-..|++...+..|.+ ....+...+++ ...++++|+ .++.+||.||++|++
T Consensus 176 ~vdv~~~r~--~a-~~~e~A~~lA~~G~~~~Am~lNG~~y~~aLG~~~e~---~~~ale~GA---~~aglSGtGPa~~Al 246 (278)
T COG1685 176 NVDVNRLRL--IA-PVVEEAFRLALKGEYFKAMVLNGILYCSALGYDLEP---ALKALEAGA---AAAGLSGTGPAYFAL 246 (278)
T ss_pred cCCHHHHHH--hh-HHHHHHHHHHhcccHHHHHHHhHHHHHHHhCCChHH---HHHHHhccc---ceeccCCCCCceEEE
Confidence 441 11111 11 011223334445677766777776 22233222222 234567887 789999999999999
Q ss_pred ccCC-CccchhhcccccchhhhhhH
Q 016716 331 GSPD-PPQFIYDDNEYEDVFLSEAR 354 (384)
Q Consensus 331 ~~~~-~a~~i~~~~~~~~~f~~~~~ 354 (384)
++++ ++.++.++ +.+|.+++..
T Consensus 247 ~~~~~~v~ea~~~--~G~V~~t~~~ 269 (278)
T COG1685 247 TEDPEEVAEAWSK--IGDVIETRNV 269 (278)
T ss_pred ecCcHHHHHHHHh--CCeEEEEecC
Confidence 9875 34444433 3556555443
No 42
>PLN02865 galactokinase
Probab=99.82 E-value=1.3e-18 Score=176.41 Aligned_cols=276 Identities=14% Similarity=0.065 Sum_probs=173.8
Q ss_pred HHHHHHhhcccCCc-ee--EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEe-------
Q 016716 58 RNKLADEVDREAPL-SR--LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLST------- 127 (384)
Q Consensus 58 ~~~~~~~~~~~~~~-~~--~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~------- 127 (384)
+++|.+.+.+.++. .. ..++|||++|| +|+|.| |.....+.++|+.+..+.+.+.+++ .+++..
T Consensus 12 ~~~l~~~F~~~fg~~p~~~~~~~APGRVnl----IGEHtD-YngG~VLp~AI~~~~~va~~~~~~~-~i~v~s~~~~~~~ 85 (423)
T PLN02865 12 LDEIRERVAAMSGRNSGEVRVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDP-EVLLRSAQFEGEV 85 (423)
T ss_pred HHHHHHHHHHHhCCCcccceEEEcCcceec----cccccc-CCCCeEEeEEeeccEEEEEEECCCC-EEEEEECCCCCce
Confidence 34455554443333 32 56899999999 899987 4444445589999999999887664 233221
Q ss_pred --eCCCC------------C-CCCChHHHHHHHHHHHHcCC--CCcEEEEEeecC-CCCCCCCchHHHHHHHHHHHHHhh
Q 016716 128 --NVPGI------------P-VDDSNLIIKALNLYRKKTES--DNFFWIHLDKKV-PSGAGLGGGSSNAATALWAANQFN 189 (384)
Q Consensus 128 --~~~~l------------p-~d~~Nli~ka~~~~~~~~g~--~~g~~I~I~k~I-P~gaGLGSSSA~aaA~l~Aln~l~ 189 (384)
...+. + .+|.|++..++..+++. |. ..|+++.|.++| |.|+|||||||..+|++.|+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~W~~Yv~gv~~~l~~~-g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~ 164 (423)
T PLN02865 86 RFRVDEIQHPIANVSSDSKEESNWGDYARGAVYALQSR-GHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENAN 164 (423)
T ss_pred EEeccccccccccccccCCCCCCHHHHHHHHHHHHHHc-CCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 11111 1 23678999999988754 43 369999999999 689999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhccc---CcceeecC----------CeEEEccCCceeeeCCCCCC-----CCccEEEEcCCCCcc-
Q 016716 190 GCVATEKELQEWSSEIGS---DIPFFFSH----------GAAYCTGRGEVVQDIPPPIP-----LDVPMVLIKPREACP- 250 (384)
Q Consensus 190 g~~ls~~eL~~la~~ie~---Dvp~~~~G----------G~a~~~g~Ge~l~~l~~~~p-----~~~~ivIv~P~~~vs- 250 (384)
+..+++++|+++|.++|. ++|+.+.+ ++.+..-+.-..++++.++| .++.+++++.+....
T Consensus 165 ~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l 244 (423)
T PLN02865 165 NLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHAL 244 (423)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCCchhh
Confidence 999999999999999883 34443322 33332221111222332221 356788888766542
Q ss_pred h------------HHHHhhhcc--------ccCCCCCH----------------------------HHHHHHHHhCCCch
Q 016716 251 T------------AEVYKHLRL--------DQTTKVDP----------------------------LTLLEQISRNGLSQ 282 (384)
Q Consensus 251 T------------~~a~~~l~~--------~~~~~~d~----------------------------~~ll~al~~~d~~~ 282 (384)
| ..+.+.+.. ......+. .+..++|.++|+..
T Consensus 245 ~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~ 324 (423)
T PLN02865 245 TNKPGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEE 324 (423)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 2 122222210 00000000 01234566666543
Q ss_pred -HHHhc----cc-cccccccchHHHHHHHHHHHc-CCCCCCceeeeccc--cceeEeccCCCccchhhccc
Q 016716 283 -DVCIN----DL-EAPAFQVLPSLKRLKQRIIAA-GRGQYDAVFMSGSG--STIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 283 -~~~~N----dL-e~~~~~~~p~l~~l~~~l~~~-Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~~~~~ 344 (384)
..+.| .+ +.+. ..+|+++.+++.+++. |+ +|++|||+| +|++++++.+.++.+.+.++
T Consensus 325 ~g~lm~~sh~Slrd~ye-vS~~eld~lv~~a~~~~Ga---~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~ 391 (423)
T PLN02865 325 FGKLISASGLSSIENYE-CGCEPLIQLYEILLKAPGV---YGARFSGAGFRGCCVAFVDAEMAEEAASFVR 391 (423)
T ss_pred HHHHHHHhhhhHHhhcc-CCcHHHHHHHHHHHhcCCC---eEEEEeccCCccEEEEEEchhHHHHHHHHHH
Confidence 11111 11 1111 2489999999999884 87 899999974 89999999877776666543
No 43
>PTZ00290 galactokinase; Provisional
Probab=99.80 E-value=1.1e-17 Score=171.52 Aligned_cols=189 Identities=13% Similarity=0.054 Sum_probs=125.2
Q ss_pred HHHHHHHhhcccCCcee-------EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCC--CCceEEEe
Q 016716 57 RRNKLADEVDREAPLSR-------LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPL--KSRDRLST 127 (384)
Q Consensus 57 ~~~~~~~~~~~~~~~~~-------~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~--~~~~~l~~ 127 (384)
++++|.+.+.+.++... +.++||+++|| +|+|.| |+.-..+.++|+.+..|.+.+.+. ...+++..
T Consensus 14 ~~~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnL----IGEHtD-YngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~ 88 (468)
T PTZ00290 14 TLSTLKPIFLETFKVENDADVEWLLFTFAPGRVNF----IGEHVD-YMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFAT 88 (468)
T ss_pred HHHHHHHHHHHHhCCCcccccceeEEEeccceeee----cccccc-cCCCeeeeccccCcEEEEEeecCCCCCCeEEEEE
Confidence 45556666444444432 77899999999 899987 444444558999999988875421 11233322
Q ss_pred eC------CCC-----CCCCChHHHHHHHHHHHHcCCC------CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhC
Q 016716 128 NV------PGI-----PVDDSNLIIKALNLYRKKTESD------NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNG 190 (384)
Q Consensus 128 ~~------~~l-----p~d~~Nli~ka~~~~~~~~g~~------~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g 190 (384)
.. ... +.+|.|++..++..++++.|.. .|+++.|.++||.|+||+||||..+|++.|++++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~ 168 (468)
T PTZ00290 89 ETDEHFVLDHLGGAKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVT 168 (468)
T ss_pred CCCceeecCcccccCCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence 11 111 1236789999988766666653 599999999999999999999999999999999863
Q ss_pred C-----C------------CC---HHHHHHHHhhccc---CcceeecCCeEEEcc----------CCceeeeCCCCC--C
Q 016716 191 C-----V------------AT---EKELQEWSSEIGS---DIPFFFSHGAAYCTG----------RGEVVQDIPPPI--P 235 (384)
Q Consensus 191 ~-----~------------ls---~~eL~~la~~ie~---Dvp~~~~GG~a~~~g----------~Ge~l~~l~~~~--p 235 (384)
. . ++ ..+|+.+|.++|. ++|+.+.+.++...| +.-.+++++.+. |
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~ 248 (468)
T PTZ00290 169 RRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLG 248 (468)
T ss_pred hhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCC
Confidence 2 1 33 4788888888885 356555443332222 122234444321 3
Q ss_pred CCccEEEEcCCCCcc
Q 016716 236 LDVPMVLIKPREACP 250 (384)
Q Consensus 236 ~~~~ivIv~P~~~vs 250 (384)
.++.++|++.++..+
T Consensus 249 ~~~~~vV~nS~v~h~ 263 (468)
T PTZ00290 249 DGACFLLIDSMIKHD 263 (468)
T ss_pred CCcEEEEEeCCCcch
Confidence 578899999887654
No 44
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.78 E-value=2.7e-19 Score=166.40 Aligned_cols=257 Identities=16% Similarity=0.193 Sum_probs=172.4
Q ss_pred eEEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEeC--CCCCc------eEEEe--eCCC---CCCC-CC
Q 016716 73 RLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSLS--PLKSR------DRLST--NVPG---IPVD-DS 137 (384)
Q Consensus 73 ~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~--~~~~~------~~l~~--~~~~---lp~d-~~ 137 (384)
.+.++.|+.. |+ ++||+.+++. +.++-++.+... +.... -.++. ..++ ++.+ +.
T Consensus 4 ~f~IkvpassaNi--------gPg~dvlg~~---l~~~~sldv~v~~~~~~~t~s~p~~c~ltya~eg~G~~~v~l~vd~ 72 (355)
T KOG1537|consen 4 SFPIKVPASSANI--------GPGLDVLGSV---LRCRASLDVLVAVEPEPVTVSVPTFCPLTYANEGPGFDFVGLAVDG 72 (355)
T ss_pred CcccccccccCCC--------CCCeeeeeee---eEEEEEEEEEEecccccccccCCCccceeeeccCCCccceeeeecc
Confidence 4666777777 99 8999999954 334443333322 11000 01111 1111 2222 45
Q ss_pred hHHHHHHHHHHHHcCC---CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccC---cce
Q 016716 138 NLIIKALNLYRKKTES---DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSD---IPF 211 (384)
Q Consensus 138 Nli~ka~~~~~~~~g~---~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~D---vp~ 211 (384)
|.|.+......+.-++ +.+-++++.+-||.|+|||||.+...++++..|+..++.|++..+++.+..+|.+ +..
T Consensus 73 n~iT~t~lyvlRcnnis~fp~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a 152 (355)
T KOG1537|consen 73 NHITLTVLYVLRCNNISIFPITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVA 152 (355)
T ss_pred ceEEEeeeeeEEeCcEeecccceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHH
Confidence 6666655554443333 2467899999999999999999999999999999999999999999888877642 111
Q ss_pred -------------------------------eecCCeEEEccCC-cee-eeCCCCCCCCccEEEEcCCCCcchHHHHhhh
Q 016716 212 -------------------------------FFSHGAAYCTGRG-EVV-QDIPPPIPLDVPMVLIKPREACPTAEVYKHL 258 (384)
Q Consensus 212 -------------------------------~~~GG~a~~~g~G-e~l-~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l 258 (384)
-++||+....... ..+ ++++.++.+++++++++|+++.+|+++|..+
T Consensus 153 ~mmGgf~GSflr~l~e~E~~~~~~~ad~ilp~~~gg~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~vL 232 (355)
T KOG1537|consen 153 EMMGGFLGSFLRALLESEAKVSGYHADNILPAIMGGFVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAVL 232 (355)
T ss_pred HHHhhHHHHHHHHhCHhhhhhcCCCHHHhcccccCCeeeecCCCcccccccccCCCCccceEEEEeccccccchhhhhhc
Confidence 1234544443211 011 2334444468999999999999999999999
Q ss_pred ccccCCCCCH-------HHHHHHHHhCCCc----hHHHhccc-cccccccchHHHHHHHHHHHcCCCCCCceeeeccccc
Q 016716 259 RLDQTTKVDP-------LTLLEQISRNGLS----QDVCINDL-EAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGST 326 (384)
Q Consensus 259 ~~~~~~~~d~-------~~ll~al~~~d~~----~~~~~NdL-e~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~t 326 (384)
|.. ++..|. ..+..++.++... ...+.+.. ||+|..++|.+++++..+..+-..+..|+++||+|||
T Consensus 233 Pt~-yp~~d~V~NlqrlA~LttAl~~~p~n~~L~y~~m~DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAGPT 311 (355)
T KOG1537|consen 233 PTE-YPMVDHVWNLQRLAALTTALLEGPDNVMLGYALMSDKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAGPT 311 (355)
T ss_pred Ccc-ccceeeeecHHHHHHHHHHHhcCCCchhhhhhhhhccccCccccccCccHHHHHHhhCcccCCceeeEEecCCCCe
Confidence 864 554432 2355677776322 24677777 9999999999999999999882222389999999999
Q ss_pred eeEeccCCCccchhhc
Q 016716 327 IVGIGSPDPPQFIYDD 342 (384)
Q Consensus 327 vfal~~~~~a~~i~~~ 342 (384)
+.|+.+ ++-++|-++
T Consensus 312 ~lAlat-enf~eI~~~ 326 (355)
T KOG1537|consen 312 ALALAT-ENFQEIGEK 326 (355)
T ss_pred eEEEec-CcHHHHHHH
Confidence 999987 555555544
No 45
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.78 E-value=1e-17 Score=182.64 Aligned_cols=260 Identities=16% Similarity=0.089 Sum_probs=169.2
Q ss_pred EEEEcceeEEecccccCccCC-----CcccccccccccCcc----cEEEEEeCCCCCceEEEee----------CCCC--
Q 016716 74 LTLFSPCKINAFLRITNKRED-----GFHDLASLFHVISLG----DTIKFSLSPLKSRDRLSTN----------VPGI-- 132 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~d-----Gyh~L~sl~~~I~l~----d~v~i~~~~~~~~~~l~~~----------~~~l-- 132 (384)
+..+||++||| +|.|.| -|+.-..+.++|+++ ..+.+++.++. .+++... ..++
T Consensus 610 ~~~~aPgRVnL----iGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~-~irl~S~d~~~~~~v~~~~~l~~ 684 (974)
T PRK13412 610 VWGRSPVRIDL----AGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEP-HIVLRSIDLGAMEVVRTNEELRD 684 (974)
T ss_pred EEEeCceEEee----cccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCC-eEEEEECCCCCceEEecchhhcc
Confidence 44599999999 688877 244444566899986 78888877653 2333221 0111
Q ss_pred ---CCCCChHHHHHH-----------------HHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCC
Q 016716 133 ---PVDDSNLIIKAL-----------------NLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCV 192 (384)
Q Consensus 133 ---p~d~~Nli~ka~-----------------~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ 192 (384)
+.++-+++..++ +...+++| .|++|+|.++||.|+|||||||.++|++.|++++++.+
T Consensus 685 ~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G--~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ 762 (974)
T PRK13412 685 YKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFG--SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLA 762 (974)
T ss_pred cccccchHhhhhhhheecccccccccchhHHHHHHHHhcC--CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 112233444333 22334444 58999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccc---------CcceeecCCeEEEcc-CC----ceeeeCCCCC---C-CCccEEEEcCCCCcchHHH
Q 016716 193 ATEKELQEWSSEIGS---------DIPFFFSHGAAYCTG-RG----EVVQDIPPPI---P-LDVPMVLIKPREACPTAEV 254 (384)
Q Consensus 193 ls~~eL~~la~~ie~---------Dvp~~~~GG~a~~~g-~G----e~l~~l~~~~---p-~~~~ivIv~P~~~vsT~~a 254 (384)
+++++|+++|..+|. |.....+||+.+... .+ ..+.+++... + .+-+++|++.++..+|+++
T Consensus 763 ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~i 842 (974)
T PRK13412 763 WDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGI 842 (974)
T ss_pred CCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHH
Confidence 999999999998872 555556788776532 21 1133333211 0 1236999999999999998
Q ss_pred HhhhccccCCC-CCH-----------HHHHHHHHhCCCch-HHHhc---c-cccc-ccccchHHHHHHHHHHHcCCCCCC
Q 016716 255 YKHLRLDQTTK-VDP-----------LTLLEQISRNGLSQ-DVCIN---D-LEAP-AFQVLPSLKRLKQRIIAAGRGQYD 316 (384)
Q Consensus 255 ~~~l~~~~~~~-~d~-----------~~ll~al~~~d~~~-~~~~N---d-Le~~-~~~~~p~l~~l~~~l~~~Ga~~~~ 316 (384)
.+.+....... ... .++..+|.++|+.. ..+.| + ++.. .....|.++++++.+++ |+ +
T Consensus 843 V~~Vv~~~~~~~~~~~~~l~~ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gA---l 918 (974)
T PRK13412 843 LAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YT---L 918 (974)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CC---c
Confidence 76532211111 110 13456777787654 11222 1 1222 23347999999999854 67 8
Q ss_pred ceeeeccc--cceeEeccC-CCccchhhccc
Q 016716 317 AVFMSGSG--STIVGIGSP-DPPQFIYDDNE 344 (384)
Q Consensus 317 ga~mSGSG--~tvfal~~~-~~a~~i~~~~~ 344 (384)
|+++||+| +++++++.+ +.++++.+.++
T Consensus 919 GaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~ 949 (974)
T PRK13412 919 GYKLPGAGGGGYLYMVAKDPGAAERIRKILT 949 (974)
T ss_pred EEEecccCcccEEEEEECChhhHHHHHHHHH
Confidence 99999975 788889865 45556665543
No 46
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.77 E-value=5.1e-17 Score=158.86 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=157.5
Q ss_pred cccccc-CcccEEEEEeCCCCCceEEEeeCCCCCC-CCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHH
Q 016716 101 SLFHVI-SLGDTIKFSLSPLKSRDRLSTNVPGIPV-DDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNA 178 (384)
Q Consensus 101 sl~~~I-~l~d~v~i~~~~~~~~~~l~~~~~~lp~-d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~a 178 (384)
||-.++ .++.+.+|+..++...+.+..+. .+|. .+.+.+.++++.+++.++...+++|+++++||.++|||||||.+
T Consensus 29 SisltLd~~~T~ttv~~~~~~~~d~~~lnG-~~~~~~~~~~v~~~l~~~~~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~ 107 (305)
T TIGR01240 29 SISLTLSQLRTLTSVAFADEFERDTFYLNG-TLQHSIDNEKTSNCLDDFRQLRKEQEKLHIVSQNNFPTAAGLASSASGL 107 (305)
T ss_pred eeEEEcCCCccEEEEEECCCCCcceEEECC-cCCCCcchHHHHHHHHHHHHhcCCCCceEEEEecCCCCCCccchHHHHH
Confidence 333555 47788888876543234555453 2333 35678999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEE-ccCCc-e--eeeCCCCCCCCc----cEEEEcCCCCc-
Q 016716 179 ATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYC-TGRGE-V--VQDIPPPIPLDV----PMVLIKPREAC- 249 (384)
Q Consensus 179 aA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~-~g~Ge-~--l~~l~~~~p~~~----~ivIv~P~~~v- 249 (384)
+|++.|++++++.+++.++|.++|.+.++.+.-+++||++.. .|.++ . ..+++. +..| .+++++|+...
T Consensus 108 aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~~GG~v~~~~g~~~~~s~a~~i~~--~~~~~~~~~~v~vv~~~~k~ 185 (305)
T TIGR01240 108 AALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFGGYVAWEKGKDDHSSAAVQVAD--DSDWPQXAMCVLVVNDIKKD 185 (305)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeeeecCeEEEEcCCCCCCeeEEECCC--ccccccceEEEEEcCCCCCC
Confidence 999999999999999999999999999755433445776543 44322 2 233432 2234 56777887665
Q ss_pred --chHHHHhhhccccC-----CC--CCHHHHHHHHHhCCCch---H------HHhccc---cccccccchHHHH---HHH
Q 016716 250 --PTAEVYKHLRLDQT-----TK--VDPLTLLEQISRNGLSQ---D------VCINDL---EAPAFQVLPSLKR---LKQ 305 (384)
Q Consensus 250 --sT~~a~~~l~~~~~-----~~--~d~~~ll~al~~~d~~~---~------~~~NdL---e~~~~~~~p~l~~---l~~ 305 (384)
||+.++..++.... .. .+...+..++.++|+.. . .|+--+ +|+..-..|.-.+ .++
T Consensus 186 vsSt~gm~~~~~ts~~~~~~v~~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~ 265 (305)
T TIGR01240 186 VSSRQGMQLTVATSELFKEWIEHVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVH 265 (305)
T ss_pred CCCHHHHHHhhhcCccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHH
Confidence 89999887764311 00 12345678888888753 1 121111 3433334455333 445
Q ss_pred HHHHcCCCCCCceeeeccccceeEeccCCCccchhhc
Q 016716 306 RIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDD 342 (384)
Q Consensus 306 ~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~~~ 342 (384)
.+++.|. ...+--=+||-|..++..++.+.+.+.
T Consensus 266 ~~r~~g~---~~~~T~DAGpNv~vl~~~~~~~~v~~~ 299 (305)
T TIGR01240 266 TLRQGGT---ICYFTMDAGPNVKVLYLAENLSKLFEF 299 (305)
T ss_pred HHHhCCC---cEEEEEcCCCCEEEEEccccHHHHHHH
Confidence 5555553 233445589999999998777766643
No 47
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=148.02 Aligned_cols=279 Identities=17% Similarity=0.171 Sum_probs=182.5
Q ss_pred EEEcceeEEeccccc------CccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC----CC-CCCCCChHHHHH
Q 016716 75 TLFSPCKINAFLRIT------NKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV----PG-IPVDDSNLIIKA 143 (384)
Q Consensus 75 ~v~aPAKiNL~L~I~------g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~----~~-lp~d~~Nli~ka 143 (384)
+.++|=+|-++--=+ .+| |.- .+.++||.|..+++++..+. .+.++.+. .+ +..+.+.++..+
T Consensus 3 i~raPLRItfgGGGTDvepy~~k~--GGa---VlnatIdky~y~~i~~~~d~-~I~~~~~~~~~v~~~~~~~h~~~~~~~ 76 (333)
T COG2605 3 ISRAPLRITFGGGGTDVEPYCSKH--GGA---VLNATIDKYIYVTIEKGFDD-EIRVRYDRTEFVKSYLENEHKPLVVES 76 (333)
T ss_pred ccccceEEEecCCCcCchHHHHhc--CCE---EEEeeeeeEEEEEEccCCCc-eEEEecchHHhhhhhHhhcCchHHHHH
Confidence 445888888731110 111 222 34489999999999876543 24443211 11 112233566666
Q ss_pred HHH-HHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc----------Cccee
Q 016716 144 LNL-YRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS----------DIPFF 212 (384)
Q Consensus 144 ~~~-~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~----------Dvp~~ 212 (384)
++. ++...|. +.++|+..+++|+|+|||||||..+|.+.|++.+.|..++..+|++.|.++|. |-.+.
T Consensus 77 l~r~~l~~~g~-~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaa 155 (333)
T COG2605 77 LKRDFLEFNGG-TPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAA 155 (333)
T ss_pred HHHHHHhhcCC-CceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 665 3333232 23999999999999999999999999999999999999999999999999983 33344
Q ss_pred ecCCeEEEc--cCCce-eeeCCCCCC----CCccEEEEcCCCCcchHHHHhhhccccCCC-CC-----------HHHHHH
Q 016716 213 FSHGAAYCT--GRGEV-VQDIPPPIP----LDVPMVLIKPREACPTAEVYKHLRLDQTTK-VD-----------PLTLLE 273 (384)
Q Consensus 213 ~~GG~a~~~--g~Ge~-l~~l~~~~p----~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~-~d-----------~~~ll~ 273 (384)
.+||+-+.. +.|++ +.|++.... .+-+++++.++.....+++........... .+ +.++.+
T Consensus 156 A~GGFnfMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e~~~~mk~~A~~~~~ 235 (333)
T COG2605 156 AFGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKD 235 (333)
T ss_pred HhCCceEEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 468988765 34533 455654310 134799999998776666654432211111 11 123456
Q ss_pred HHHhCCCch--HH------HhccccccccccchHHHHHHHHHHHcCCCCCCceeeeccccc--eeEeccCCCccchhhcc
Q 016716 274 QISRNGLSQ--DV------CINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGST--IVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 274 al~~~d~~~--~~------~~NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~t--vfal~~~~~a~~i~~~~ 343 (384)
++..+|+.. .. +...|. .....|.++++.+.++++|| +|.+++|+|+- ++.+|++.+...+++++
T Consensus 236 al~~nd~~~f~~~l~~gW~~KK~ls--~~ISN~~IDriy~~A~~~GA---~~gKl~GaG~gGFllf~~~p~k~~~l~r~l 310 (333)
T COG2605 236 ALVRNDIPEFGQILDRGWEAKKKLS--SRISNDAIDRIYELALKNGA---YGGKLSGAGGGGFLLFFCDPSKRNELARAL 310 (333)
T ss_pred HHHhcchHHHHHHHHhHHHhhhhhc--cCcCcHHHHHHHHHHHhcCc---hhceeeccCCccEEEEEeCccchHHHHHHH
Confidence 777777543 11 111121 12247999999999999999 89999998754 55557777777888888
Q ss_pred cccchhhhhhHHHhhcCCceEE
Q 016716 344 EYEDVFLSEARFITREVNQWYR 365 (384)
Q Consensus 344 ~~~~~f~~~~~~~~~~~~~w~~ 365 (384)
+....|+....|=.+.-..|++
T Consensus 311 ~~~~~~~~~~~Fd~~Gsr~i~i 332 (333)
T COG2605 311 EKEQGFVVDTSFDKEGSRIIFI 332 (333)
T ss_pred HHhcCCeEEEEecCCCeEEEec
Confidence 8778888777776676667775
No 48
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.63 E-value=2.7e-14 Score=138.19 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=161.4
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEee---------CCC-------------
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTN---------VPG------------- 131 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~---------~~~------------- 131 (384)
+.+.||+|+.| .|+|+.=|+.- .+..+|||+..+.+..+.+. .+.+... ..+
T Consensus 5 l~vsaPGKvIL----fGEHAVVyg~~-AlAaai~LrTyl~l~~san~-~i~l~l~di~~~~~w~l~~~~~~l~~~~~~~~ 78 (397)
T KOG1511|consen 5 LLVSAPGKVIL----FGEHAVVYGRT-ALAAAIDLRTYLRLQTSAND-RILLQLPDISIEKAWSLADFNGALPEQRSTYE 78 (397)
T ss_pred eeecCCccEEE----eccceeEECCc-eeEEEeecceeEEEEecCCC-eEEEecccCCceEEEEhhhhhhhhhhhhhhhh
Confidence 48899999999 59998655532 34488999999999766532 2222110 000
Q ss_pred ---CCC---------------CCChH--HHHHHHHHH----HHcCCCCc----EEEEEeecCCCCCCCCchHHHHHHHHH
Q 016716 132 ---IPV---------------DDSNL--IIKALNLYR----KKTESDNF----FWIHLDKKVPSGAGLGGGSSNAATALW 183 (384)
Q Consensus 132 ---lp~---------------d~~Nl--i~ka~~~~~----~~~g~~~g----~~I~I~k~IP~gaGLGSSSA~aaA~l~ 183 (384)
-|. ++.+. ...|+-.+. -.+-...| +.+.+++.+|+|+|||||+|..++...
T Consensus 79 ~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAt 158 (397)
T KOG1511|consen 79 SVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALAT 158 (397)
T ss_pred ccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHH
Confidence 000 01111 111111111 11111234 899999999999999999999999999
Q ss_pred HHHHhhCCCCCH-----------HHHHHHHhhcc---------cCcceeecCCeEEEccCCceeeeCCCCCCCCccEEEE
Q 016716 184 AANQFNGCVATE-----------KELQEWSSEIG---------SDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVLI 243 (384)
Q Consensus 184 Aln~l~g~~ls~-----------~eL~~la~~ie---------~Dvp~~~~GG~a~~~g~Ge~l~~l~~~~p~~~~ivIv 243 (384)
++..+.|.--++ +-+-+||.+.| .|...+.+||.+... .|..++.++.. | .++++++
T Consensus 159 all~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg~i~f~-kg~~~~~Lk~~-~-~L~illt 235 (397)
T KOG1511|consen 159 ALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGGLISFK-KGVEIESLKHL-P-PLRILLT 235 (397)
T ss_pred HHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCceEEee-cCccceecccC-C-CceEEEE
Confidence 998877753222 34556777765 377778888864432 34345555533 3 5899999
Q ss_pred cCCCCcchHHHHhhhccccCCCCCHH------------HHHHHHHhC-C---Cch-----H--HHhccccccccccchHH
Q 016716 244 KPREACPTAEVYKHLRLDQTTKVDPL------------TLLEQISRN-G---LSQ-----D--VCINDLEAPAFQVLPSL 300 (384)
Q Consensus 244 ~P~~~vsT~~a~~~l~~~~~~~~d~~------------~ll~al~~~-d---~~~-----~--~~~NdLe~~~~~~~p~l 300 (384)
+..++.+|++..+.++......++.+ +....+.++ + ... + .+.|+|-.......|.+
T Consensus 236 nTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVsH~~l 315 (397)
T KOG1511|consen 236 NTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRINQDLLDALGVSHPSL 315 (397)
T ss_pred ccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHhCCCcHHH
Confidence 99999999999888776533333321 112223311 1 110 1 24667765666678999
Q ss_pred HHHHHHHHHcCCCCCCceeeeccc--cceeEeccCCCccchhhc
Q 016716 301 KRLKQRIIAAGRGQYDAVFMSGSG--STIVGIGSPDPPQFIYDD 342 (384)
Q Consensus 301 ~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~~~ 342 (384)
+.+++...+.|. ..+|+|+| +|++.+.+....++.++.
T Consensus 316 e~v~~~t~k~gi----~sKLTGAGgGGc~itlL~~~~~qe~i~~ 355 (397)
T KOG1511|consen 316 ELVCTTTRKLGI----HSKLTGAGGGGCVITLLKPGTEQEQIDK 355 (397)
T ss_pred HHHHHHHHHhCc----ceecccCCCCceEEEEECCCCchHHHHH
Confidence 999999999984 67999975 799999887654444443
No 49
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=1e-14 Score=135.66 Aligned_cols=232 Identities=15% Similarity=0.143 Sum_probs=157.1
Q ss_pred eEEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHc
Q 016716 73 RLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKT 151 (384)
Q Consensus 73 ~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~ 151 (384)
..+..+||.. -| |+|-. .|-|.|.| ++|++|.++++...+.. +. .+. -...++.+....+.
T Consensus 13 ~~~A~cpAs~GEL---lQG~~-~g~~~Lvs--~PIa~~s~v~~~~~s~~--~s-------~~~---t~a~~~~e~~la~~ 74 (293)
T COG4542 13 VISAKCPASCGEL---LQGSF-NGSEKLVS--FPIALFSEVTLFDRSGK--DS-------VNV---TPAHKFKENILARW 74 (293)
T ss_pred ceeeecccchhhh---heeee-cCCceEEE--cchhhhhheeeeccCCC--cc-------ccc---chhHHHHHHHHHHh
Confidence 4777899988 55 35554 35566664 89999999998755421 11 110 11244555555666
Q ss_pred CCC----CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc-cCcceeecCCeEEEccCCce
Q 016716 152 ESD----NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG-SDIPFFFSHGAAYCTGRGEV 226 (384)
Q Consensus 152 g~~----~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie-~Dvp~~~~GG~a~~~g~Ge~ 226 (384)
+.+ +|..+.+.|+||.|.||+||+||++|+++|.+.++|..+.+.+|+++|.++| +|...|- +-+.+....|..
T Consensus 75 ~~~~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPtDsiiF~-~~tlFd~r~g~~ 153 (293)
T COG4542 75 GVTKLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTDSIIFD-KATLFDQREGRV 153 (293)
T ss_pred CccceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCccceecc-cceeehhccchH
Confidence 653 5799999999999999999999999999999999999999999999999999 4776663 344555555654
Q ss_pred eeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCC---CHHHH----HHHHHhCCCch-------HHHhcccccc
Q 016716 227 VQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKV---DPLTL----LEQISRNGLSQ-------DVCINDLEAP 292 (384)
Q Consensus 227 l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~---d~~~l----l~al~~~d~~~-------~~~~NdLe~~ 292 (384)
++-+.. . +.+.++++.++..+.|.+..+- |..+.... +...+ ..|+..+|... ....|.
T Consensus 154 ~~~~g~-~-PpL~ilv~e~~~~v~T~~y~q~-~r~e~~~~~~~e~~~l~~~v~~A~~~~~~~~lG~AAT~SAv~~Q---- 226 (293)
T COG4542 154 IEFLGE-M-PPLHILVFEGKGTVETVDYNQP-PRGEKLLAPLAELGNLINLVEKALKVGDPKLLGEAATLSAVKNQ---- 226 (293)
T ss_pred HHhcCC-C-CceEEEEEcCCCceeeeeccCC-chhhhhhhhHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhc----
Confidence 443332 2 3589999999999999865432 21111111 11122 23555555431 122332
Q ss_pred ccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccC
Q 016716 293 AFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSP 333 (384)
Q Consensus 293 ~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~ 333 (384)
.....|.+.++.+...+.++ +|+..++||+-+--+++.
T Consensus 227 ~~LPK~~~~~lL~l~e~~~~---~Gv~VAHSGtmlGli~D~ 264 (293)
T COG4542 227 DRLPKPGLNELLRLVEETCA---IGVIVAHSGTMLGLIYDR 264 (293)
T ss_pred cccCchhHHHHHHHHHHhcc---cceEEeccCceEEeeecc
Confidence 22347889999999988887 899999999877555554
No 50
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.37 E-value=2.6e-11 Score=124.11 Aligned_cols=176 Identities=11% Similarity=0.040 Sum_probs=116.8
Q ss_pred EEcceeEEecccccCcc---CCCcccccccccccCcccEEEEEeCCCCCc-----eEEE------------eeCCCC---
Q 016716 76 LFSPCKINAFLRITNKR---EDGFHDLASLFHVISLGDTIKFSLSPLKSR-----DRLS------------TNVPGI--- 132 (384)
Q Consensus 76 v~aPAKiNL~L~I~g~~---~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~-----~~l~------------~~~~~l--- 132 (384)
+.||||+=| .|.- .+||..+. .+++-+-+++|++...... +.+. ......
T Consensus 2 ~sAPGKlli----AGgYlVLep~y~aiV---val~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~~~ 74 (454)
T TIGR01219 2 ASAPGKVLM----AGGYLVLDKPYAGLV---LGLNARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLTLQ 74 (454)
T ss_pred cccCceEEE----ecceEEecCCCcEEE---EEecceEEEEEeecccccccCcceEEEeCCCCCCCceEEEEecCCccce
Confidence 469999966 3432 24666544 7888877777765432100 1121 111110
Q ss_pred --------CCCCChHHHHHHHHHHHHcCC-------CCcEEEEEeecC-------------------C--------CCCC
Q 016716 133 --------PVDDSNLIIKALNLYRKKTES-------DNFFWIHLDKKV-------------------P--------SGAG 170 (384)
Q Consensus 133 --------p~d~~Nli~ka~~~~~~~~g~-------~~g~~I~I~k~I-------------------P--------~gaG 170 (384)
+.....+|..|+.....+... ..+++|+|.++. + .+.|
T Consensus 75 ~~~~~~~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~G 154 (454)
T TIGR01219 75 SVSASDSRNPFVNPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTG 154 (454)
T ss_pred eecccccCCCCCChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccC
Confidence 111234677787777765432 246899996555 2 2789
Q ss_pred CCchHHHHHHHHHHHHHhhCCCC-------------CHHHHHHHHhhcc----------cCcceeecCCeEEEccCCc--
Q 016716 171 LGGGSSNAATALWAANQFNGCVA-------------TEKELQEWSSEIG----------SDIPFFFSHGAAYCTGRGE-- 225 (384)
Q Consensus 171 LGSSSA~aaA~l~Aln~l~g~~l-------------s~~eL~~la~~ie----------~Dvp~~~~GG~a~~~g~Ge-- 225 (384)
||||+|.++|++.|+..+++..+ +.+++.++|...+ .|+.+..+||.++..-..+
T Consensus 155 LGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi~Y~rfd~~~l 234 (454)
T TIGR01219 155 LGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQRYRRFSPELI 234 (454)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCceEEEecChhhh
Confidence 99999999999999999999887 7889999988642 3788888899766542111
Q ss_pred --------------------------eeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhcc
Q 016716 226 --------------------------VVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRL 260 (384)
Q Consensus 226 --------------------------~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~ 260 (384)
.+.++ .+|.++++++..++.+.+|+++.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l--~lP~~l~Llvgdtg~~ssT~~lV~~V~~ 293 (454)
T TIGR01219 235 SFLQVAITGLPLNEVLGTIVKGKWDNKRTEF--SLPPLMNLFMGDPGGGSSTPSMVGKVKK 293 (454)
T ss_pred hhhhccccccchhhhHHHHhccCCCCceeec--cCCCCCEEEEEcCCCCcCcHHHHHHHHH
Confidence 12233 3466899999999999999999888754
No 51
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.30 E-value=1.6e-10 Score=112.96 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=145.7
Q ss_pred cccccc-CcccEEEEEe-CCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHH
Q 016716 101 SLFHVI-SLGDTIKFSL-SPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNA 178 (384)
Q Consensus 101 sl~~~I-~l~d~v~i~~-~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~a 178 (384)
|+-.++ |++...++.. .+..+.+.+-.+....+ +....+.++++.++++++...+++|+.+++.|.++|||||||.+
T Consensus 34 SiS~t~~df~t~t~~~~~~~~~~~D~~~lNG~~~~-~~~~k~~~~ld~~R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~ 112 (329)
T COG3407 34 SISVTLEDFSTTTTAEELTENDEEDTFILNGELSE-DENEKARRVLDRFRKEYGISFKVKIVSYNNFPTAAGLASSAAGA 112 (329)
T ss_pred eeEEEeccccceeEEEEecCCCCccEEEECCccCc-hHHHHHHHHHHHHHHhhcccceEEEEEecCCCccccccccHHHH
Confidence 344556 7777777733 33222356655543322 23467999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCe-EEEccCCceeeeC---CCCCC--CCccEEEEcCCC-Ccch
Q 016716 179 ATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGA-AYCTGRGEVVQDI---PPPIP--LDVPMVLIKPRE-ACPT 251 (384)
Q Consensus 179 aA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~-a~~~g~Ge~l~~l---~~~~p--~~~~ivIv~P~~-~vsT 251 (384)
||+..|+++++++.++..+|.++|...-+-..=.+.||+ +|..|.|+..... +...+ ...-++++.|.. .+++
T Consensus 113 AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS 192 (329)
T COG3407 113 AALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFGGFVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSS 192 (329)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHhccchhhhhcCCeeEeccCCCCccceeeeccccCccccceEEEEEccccCCCCc
Confidence 999999999999999999999999875433333335776 3344455432211 22222 233466666754 4666
Q ss_pred HHHHhh-hccc-cC------CCCCHHHHHHHHHhCCCch--H-------HHhccc---cccccccchHHHHHHHHHHHcC
Q 016716 252 AEVYKH-LRLD-QT------TKVDPLTLLEQISRNGLSQ--D-------VCINDL---EAPAFQVLPSLKRLKQRIIAAG 311 (384)
Q Consensus 252 ~~a~~~-l~~~-~~------~~~d~~~ll~al~~~d~~~--~-------~~~NdL---e~~~~~~~p~l~~l~~~l~~~G 311 (384)
.+..+. .... .+ ...+...+..++.++|+.. . .|+--+ .|+-+-..++-.++++.+.+..
T Consensus 193 ~~gm~~~~~tS~~y~~w~~~~~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r 272 (329)
T COG3407 193 REGMQLTAETSPFYDAWLEHSEEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELR 272 (329)
T ss_pred hHHHHHHHHcChHHHHHHHHHHHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHH
Confidence 655544 1110 00 1112234566777777643 1 111111 2223333455445444444332
Q ss_pred CCCCCceeeeccccceeEeccCCCccchhhc
Q 016716 312 RGQYDAVFMSGSGSTIVGIGSPDPPQFIYDD 342 (384)
Q Consensus 312 a~~~~ga~mSGSG~tvfal~~~~~a~~i~~~ 342 (384)
..+....+--=+||.|+.++..++..++.+.
T Consensus 273 ~~g~~~~fT~DaGPnV~v~~~~~~l~~~~~~ 303 (329)
T COG3407 273 KEGNAVYFTMDAGPNVKVITLEENLIDLLEI 303 (329)
T ss_pred hcCCceEEEEcCCCceEEEEecccHHHHHHH
Confidence 2001223444579999999998877666644
No 52
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.18 E-value=1.9e-11 Score=93.02 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=47.8
Q ss_pred EEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc
Q 016716 158 WIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG 206 (384)
Q Consensus 158 ~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie 206 (384)
+|+++++||.++|||||||+++|++.+++++++.++++++|.+++.++|
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e 49 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAE 49 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHH
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999988
No 53
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.12 E-value=3.9e-09 Score=104.06 Aligned_cols=260 Identities=17% Similarity=0.197 Sum_probs=147.4
Q ss_pred EEEEcceeEEecccc-cCccCC--CcccccccccccC---cccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHH
Q 016716 74 LTLFSPCKINAFLRI-TNKRED--GFHDLASLFHVIS---LGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLY 147 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I-~g~~~d--Gyh~L~sl~~~I~---l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~ 147 (384)
.+++||. |+.|.= -||+.. --..-.||...++ +|.+-+|+..++...+.+..+....+. ....+.++++.+
T Consensus 4 ~ta~A~~--NIALIKYWGKrD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~LNG~~~~~-~~~rv~~~l~~~ 80 (343)
T PLN02407 4 VTAQAPT--NIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISL-SGGRYQNCLREI 80 (343)
T ss_pred EEEEecc--eeeeehhcccccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEECCEecCc-ccHHHHHHHHHH
Confidence 4556554 554322 377632 1122235666775 788877776544323566666543442 234788899999
Q ss_pred HHHcCC-------------CC-cEEEEEee--cCCCCCCCCchHHHHHHHHHHHHHhhCCCCC-HHHHHHHHhhc-ccCc
Q 016716 148 RKKTES-------------DN-FFWIHLDK--KVPSGAGLGGGSSNAATALWAANQFNGCVAT-EKELQEWSSEI-GSDI 209 (384)
Q Consensus 148 ~~~~g~-------------~~-g~~I~I~k--~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls-~~eL~~la~~i-e~Dv 209 (384)
++..+. +. .++++|.+ ++|.++|||||||..+|.+.|++.+++.+++ .++|..+|... |++.
T Consensus 81 r~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~ 160 (343)
T PLN02407 81 RARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSAC 160 (343)
T ss_pred HHHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHH
Confidence 987665 11 12455555 9999999999999999999999999999999 99999999864 2344
Q ss_pred ceeecCCeEEE-ccC---Cce--eeeCCCC--CCCCccEEE-EcCCC---CcchHHHHhhhcccc-C----C---CCCHH
Q 016716 210 PFFFSHGAAYC-TGR---GEV--VQDIPPP--IPLDVPMVL-IKPRE---ACPTAEVYKHLRLDQ-T----T---KVDPL 269 (384)
Q Consensus 210 p~~~~GG~a~~-~g~---Ge~--l~~l~~~--~p~~~~ivI-v~P~~---~vsT~~a~~~l~~~~-~----~---~~d~~ 269 (384)
- .++||++.- .|. |.. -.++... .| ++.+++ +++.. -.||.-+...+.... + . ..+..
T Consensus 161 r-S~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~-dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~~~~w~~~~~~~~~~ 238 (343)
T PLN02407 161 R-SLYGGFVKWNMGKKEDGSDSIAVQLADEKHWD-DLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRIL 238 (343)
T ss_pred H-HhhCCeEEecCCCCCCCCceeEEECCCccCCc-cceEEEEEEcCCcCCCCchHHHHHhhhcChhHHHHHHhhhHHHHH
Confidence 4 556787544 332 111 1233211 11 243443 33433 235555544322110 0 1 11234
Q ss_pred HHHHHHHhCCCch---H------HHhccc---cccccccchH---HHHHHHHHHHc-CCCCCCceeeeccccceeEeccC
Q 016716 270 TLLEQISRNGLSQ---D------VCINDL---EAPAFQVLPS---LKRLKQRIIAA-GRGQYDAVFMSGSGSTIVGIGSP 333 (384)
Q Consensus 270 ~ll~al~~~d~~~---~------~~~NdL---e~~~~~~~p~---l~~l~~~l~~~-Ga~~~~ga~mSGSG~tvfal~~~ 333 (384)
.+..++.++|+.. - .|+.-. .|+-.-..|. +-++++.+++. |. ....+--=+||-|..++..
T Consensus 239 ~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~--~~v~yT~DAGPNv~vl~~~ 316 (343)
T PLN02407 239 QMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGT--PQVAYTFDAGPNAVLIALN 316 (343)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCC--ccEEEEecCCCCEEEEECh
Confidence 5678888888753 1 121111 3343333454 34444555543 42 0123444589999999887
Q ss_pred CCccc-hh
Q 016716 334 DPPQF-IY 340 (384)
Q Consensus 334 ~~a~~-i~ 340 (384)
++..+ +.
T Consensus 317 ~~~~~~v~ 324 (343)
T PLN02407 317 RKVAAQLL 324 (343)
T ss_pred hhhHHHHH
Confidence 65443 44
No 54
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.06 E-value=2.1e-09 Score=101.90 Aligned_cols=235 Identities=17% Similarity=0.200 Sum_probs=147.7
Q ss_pred EEEEcceeE-EecccccCccCC--CcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHH
Q 016716 74 LTLFSPCKI-NAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 74 ~~v~aPAKi-NL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~ 150 (384)
+++++|+.| -+|.-+.++.+- |=--.+ .+++.+.+++++..+. ..+..|. .+.| .-...++++.+
T Consensus 3 ~~~fvP~hITgfF~pv~~~~p~~SGSiGaG---v~l~~gv~v~v~~~~~---~~v~~Ng--~~~d-~~~~~~v~e~L--- 70 (283)
T COG1829 3 VRLFVPGHITGFFVPVIGKDPLKSGSIGAG---VALERGVTVEVRFGEG---TGVRLNG--KKID-LPITRKVIEKL--- 70 (283)
T ss_pred ceEeccceeEEEEEeccCCCCccCCCccee---EEecCceeEEEEecCC---ceEEECC--eecc-chhHHHHHHHh---
Confidence 678999999 777777776531 222222 4668888888876553 2333333 2222 22334444444
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc-------cCcceeecCCeEEEccC
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG-------SDIPFFFSHGAAYCTGR 223 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie-------~Dvp~~~~GG~a~~~g~ 223 (384)
+.. ++.|++...+|+|+|+|-|+|.|++.+.|++..+++. .++..++|+..| +|+.+-..||+++-..-
T Consensus 71 -~~~-~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gtGLGDVvAq~~GGlViR~~p 146 (283)
T COG1829 71 -GPD-GVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGTGLGDVVAQYTGGLVIRVKP 146 (283)
T ss_pred -Ccc-CcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCCCchHHHHHhcCcEEEEecC
Confidence 432 4789999999999999999999999999999999876 889999999876 48877777886664322
Q ss_pred C---c-eeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCchHH--Hhccccccccccc
Q 016716 224 G---E-VVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDV--CINDLEAPAFQVL 297 (384)
Q Consensus 224 G---e-~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~~~--~~NdLe~~~~~~~ 297 (384)
| . .++.++ .| +++++.+.+ .+++|+++....-..... ......+..|.++.-.... ..++|.....-..
T Consensus 147 G~Pg~~~vd~Ip--~~-~~~V~~~~~-g~l~T~~vi~~~~~~~i~-~~g~~~l~ellk~Ptle~f~~~a~~FA~~~Gl~~ 221 (283)
T COG1829 147 GGPGEGEVDRIP--VP-GLRVITISL-GELSTKSVITDEVVRKIN-EAGKRALAELLKNPTLENFMEEAREFARRTGLMS 221 (283)
T ss_pred CCCCeEEEEEee--cC-CceEEEEEc-ccccHHHhhhhHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCcCH
Confidence 2 1 244444 32 255555555 579999887553211010 0112345555554322211 2334422222223
Q ss_pred hHHHHHHHHHHHcCCCCCCceeeeccccceeEecc
Q 016716 298 PSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGS 332 (384)
Q Consensus 298 p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~ 332 (384)
.++.+.++.+.+.|- .++.|..-|-|||++.+
T Consensus 222 ~~v~~~~~~~~~~g~---l~as~~mlg~tVFa~~~ 253 (283)
T COG1829 222 EEVKEAAEALHSVGG---LGASMAMLGVTVFALSP 253 (283)
T ss_pred HHHHHHHHHhhhcCc---hhHhHHhhCcEEEEecc
Confidence 567777777766664 78899999999999983
No 55
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.9e-07 Score=94.71 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=100.7
Q ss_pred hcccCCceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---------CCCCC-
Q 016716 65 VDREAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---------PGIPV- 134 (384)
Q Consensus 65 ~~~~~~~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---------~~lp~- 134 (384)
..++.....+.+++|+++|| +|+|.| |+....++.+||.-..+.+.+.++. ...+...+ ..+|.
T Consensus 31 ~~~~~~kp~~~a~~PgRVnL----iGEHiD-y~~~sVlpmaid~~~l~~~~~~~d~-~~sl~~tN~~~~f~~~~~~~p~~ 104 (489)
T KOG0631|consen 31 QAAYGAKPVFVARAPGRVNL----IGEHID-YCGYSVLPMAIDVDTLIAVAPSDDG-IVSLRLTNFNPDFIYFKYPLPSI 104 (489)
T ss_pred HHhhCCCceEEEecCCceec----ccceee-ecCceeeeEEeeeeeEEEEEEcCCC-ceeEEEecCCCccceeeccCCch
Confidence 55677777899999999999 999998 7777777799998888888887654 21222111 11222
Q ss_pred ---------CCChHHHHHHHHHHHHc---CC--CC--cEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhh-CCC--CCH
Q 016716 135 ---------DDSNLIIKALNLYRKKT---ES--DN--FFWIHLDKKVPSGAGLGGGSSNAATALWAANQFN-GCV--ATE 195 (384)
Q Consensus 135 ---------d~~Nli~ka~~~~~~~~---g~--~~--g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~-g~~--ls~ 195 (384)
.|.|+++..+..+.++. +. .. |+.+..+.++|.|+||.||||-.+++..|..++. |-+ .++
T Consensus 105 ~~~I~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~k 184 (489)
T KOG0631|consen 105 VWQIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISK 184 (489)
T ss_pred hcccCCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccch
Confidence 26799954444444443 33 23 8999999999999999999888877777766655 666 889
Q ss_pred HHHHHHHhhcccC
Q 016716 196 KELQEWSSEIGSD 208 (384)
Q Consensus 196 ~eL~~la~~ie~D 208 (384)
+++..+....|.+
T Consensus 185 kd~~~i~~~ae~~ 197 (489)
T KOG0631|consen 185 KDLATITVVAESY 197 (489)
T ss_pred hhhhcceEEeecc
Confidence 9999998877654
No 56
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.62 E-value=3.4e-06 Score=81.42 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=97.8
Q ss_pred eEEEeeCCCCCCCCChHHHHHHHHHHHHcCCC------------CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhC
Q 016716 123 DRLSTNVPGIPVDDSNLIIKALNLYRKKTESD------------NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNG 190 (384)
Q Consensus 123 ~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~~------------~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g 190 (384)
+++-.|...+|.. +.-..++++.+++..+.. -.++|.-.+|.|.++||.||+|--||.+.|++++++
T Consensus 61 dr~wLNGk~~~i~-~~R~q~cl~e~r~~~~d~~~~~~~~~~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~ 139 (395)
T KOG2833|consen 61 DRMWLNGKEVPIS-NKRYQRCLREIRRLARDREESEASLPSNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYG 139 (395)
T ss_pred ceeEECCceeccc-cHHHHHHHHHHHHHhhhhhhhhcccCcCCCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhC
Confidence 3444555566664 344566777777654321 156777778999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcccCcceeecCCeEEE-cc---CCc---eeeeCC-CCCCCCccEEEEc-CC---CCcchHHHHhhh
Q 016716 191 CVATEKELQEWSSEIGSDIPFFFSHGAAYC-TG---RGE---VVQDIP-PPIPLDVPMVLIK-PR---EACPTAEVYKHL 258 (384)
Q Consensus 191 ~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~-~g---~Ge---~l~~l~-~~~p~~~~ivIv~-P~---~~vsT~~a~~~l 258 (384)
++.+.+||.++|.+..+-+.=.++||++-- .| .|. .+...+ ..+| +++++|++ .+ ..-||.-+++.+
T Consensus 140 l~~~~~els~iAR~GSGSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~-el~ililVvs~~~K~t~ST~GM~~sv 218 (395)
T KOG2833|consen 140 LDDSPEELSRIARQGSGSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWP-ELRILILVVSDAKKKTGSTEGMRRSV 218 (395)
T ss_pred CCCCHHHHHHHHhccCchhhhhhhcceeEeecccccCCCceeEEEeccccCCC-ceEEEEEEeccccccccccHHHHHHH
Confidence 999999999998864433433556787532 23 231 122222 1244 55555444 32 234666666544
Q ss_pred cccc-----CCCCC---HHHHHHHHHhCCCch
Q 016716 259 RLDQ-----TTKVD---PLTLLEQISRNGLSQ 282 (384)
Q Consensus 259 ~~~~-----~~~~d---~~~ll~al~~~d~~~ 282 (384)
.... ..... ...+.+++.+.|+..
T Consensus 219 eTS~L~qhRi~~vVP~Ri~~m~eaI~~rDF~~ 250 (395)
T KOG2833|consen 219 ETSQLLQHRIESVVPQRIQQMREAIRERDFES 250 (395)
T ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHhcCHHH
Confidence 3210 11111 235678888888753
No 57
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.30 E-value=2.2e-07 Score=73.11 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=52.6
Q ss_pred HHHHHHhCCCch--HHHhccc--cc--cccccchHHHHHHHHHHHcCCCCCCceeeecc--ccceeEeccC-CCccchhh
Q 016716 271 LLEQISRNGLSQ--DVCINDL--EA--PAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGS--GSTIVGIGSP-DPPQFIYD 341 (384)
Q Consensus 271 ll~al~~~d~~~--~~~~NdL--e~--~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGS--G~tvfal~~~-~~a~~i~~ 341 (384)
++++|.++|+.. ..+.+.. ++ ++....|++.++++.+++.|+ ++++|||| |||||+|+++ +.++++.+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga---~~~~~sGsG~G~~v~~l~~~~~~~~~v~~ 77 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGA---LGAKMSGSGGGPTVFALCKDEDDAERVAE 77 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTE---SEEEEETTSSSSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCC---CceecCCCCCCCeEEEEECCHHHHHHHHH
Confidence 456788887654 2222111 34 667789999999999999997 79999999 9999999955 56666666
Q ss_pred ccc
Q 016716 342 DNE 344 (384)
Q Consensus 342 ~~~ 344 (384)
.++
T Consensus 78 ~l~ 80 (85)
T PF08544_consen 78 ALR 80 (85)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 58
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=96.43 E-value=0.0029 Score=45.83 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=29.1
Q ss_pred cCCceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEe
Q 016716 68 EAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSL 116 (384)
Q Consensus 68 ~~~~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~ 116 (384)
|...+.+.++||+++|| +|+|.| |..-..+.++|++...+.+.+
T Consensus 8 fg~~p~~~~~APGRvnl----iGeHtD-y~gG~Vl~~Ai~~~~~~a~~~ 51 (52)
T PF10509_consen 8 FGEEPEVVASAPGRVNL----IGEHTD-YNGGFVLPAAIDLRTYVAVSP 51 (52)
T ss_dssp HSS--SEEEEEEEEEEE----E-TT-G-GGT-EEEEEEEEEEEEEEEEE
T ss_pred hCCCCCEEEECCceEEe----cCcccc-cCCCeEEEEEeeccEEEEEEc
Confidence 34445578899999999 899987 333333448999998888764
No 59
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=93.95 E-value=1.5 Score=42.43 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=57.2
Q ss_pred CCCCCchHHHHHHHHHHH-HHh-hCCCCCH-HHHHHHHhh--------ccc--CcceeecCCeEEEccCCc---eeeeCC
Q 016716 168 GAGLGGGSSNAATALWAA-NQF-NGCVATE-KELQEWSSE--------IGS--DIPFFFSHGAAYCTGRGE---VVQDIP 231 (384)
Q Consensus 168 gaGLGSSSA~aaA~l~Al-n~l-~g~~ls~-~eL~~la~~--------ie~--Dvp~~~~GG~a~~~g~Ge---~l~~l~ 231 (384)
-.||||||+.+.+..-.+ ..+ .+.++++ .++-++|+. +|+ |+.+...|+.++-.-.+. ++..+.
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiyrRF~p~li~~l~qig 186 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIYRRFEPGLIPKLRQIG 186 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEEeecCcchhhhhHhhC
Confidence 579999999998877332 222 4445665 777777765 343 777777787776322211 121121
Q ss_pred -CCCCCCccEEEEcCCCCcchHHHHhhhccc
Q 016716 232 -PPIPLDVPMVLIKPREACPTAEVYKHLRLD 261 (384)
Q Consensus 232 -~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~ 261 (384)
..+ .++.+++-+.....+|....+.+.+.
T Consensus 187 ~~nf-g~y~LmmGd~a~gSeTvglV~kv~~w 216 (337)
T COG3890 187 AVNF-GDYYLMMGDQAIGSETVGLVCKVNKW 216 (337)
T ss_pred cccc-cCeeeeecccccCccchHHHHHHHHH
Confidence 122 25677777777788888777776553
No 60
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=92.59 E-value=0.28 Score=50.89 Aligned_cols=44 Identities=36% Similarity=0.378 Sum_probs=38.0
Q ss_pred CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHH
Q 016716 155 NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKEL 198 (384)
Q Consensus 155 ~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL 198 (384)
.||+|+..+++|.|+|||.||-.+..++.|+.+..|.--..+.|
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaL 733 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEAL 733 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHh
Confidence 38999999999999999999999999999999988775544443
No 61
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=81.39 E-value=1.8 Score=44.88 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHHcCCCCCCceeeecc--ccceeEeccCCCccchhhcccccchhhhhhHHHhhc-CCceEEec
Q 016716 296 VLPSLKRLKQRIIAAGRGQYDAVFMSGS--GSTIVGIGSPDPPQFIYDDNEYEDVFLSEARFITRE-VNQWYRES 367 (384)
Q Consensus 296 ~~p~l~~l~~~l~~~Ga~~~~ga~mSGS--G~tvfal~~~~~a~~i~~~~~~~~~f~~~~~~~~~~-~~~w~~~~ 367 (384)
.+|++.+|.+.+++.|+ +|+.|+|+ |+|...+.+.+...++.++++. +.|-..+..+++. ...|-+..
T Consensus 408 scpel~qL~kiala~g~---~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~-~~Y~ka~~~~~~~~~k~~~~~s 478 (489)
T KOG0631|consen 408 SCPELDQLCKIALANGG---VGARLTGAGWGGCTVALVPADLVDFAVAALKE-IYYEKAYPKFAQDELKKALIVS 478 (489)
T ss_pred CCHhHHHHHHHHHhcCC---ccceeeccccccceeeeccccchHHHHHhhhh-hhhccccchhhhchhhceEEEe
Confidence 59999999999999997 78999985 6999999986665565555331 1122455555553 35666554
No 62
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=45.86 E-value=79 Score=28.85 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=43.2
Q ss_pred HHHHHHHcCCC-CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 016716 144 LNLYRKKTESD-NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS 207 (384)
Q Consensus 144 ~~~~~~~~g~~-~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~ 207 (384)
+.......|++ .++.+++...+|- --.+++++.++++++|+.++.++|.+-|.+++.
T Consensus 102 Ll~~a~~~gi~ai~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 102 LLGVSELEGIPGACLMGETPGYMID-------PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred HHHHHHHCCCCeEEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 33334555665 3666666666665 567788899999999999999999999988874
No 63
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=36 Score=30.56 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceee
Q 016716 169 AGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFF 213 (384)
Q Consensus 169 aGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~ 213 (384)
.+.|||-.-|.++.+|+-+.. .++.+|+++-+.++.+|+..+.
T Consensus 124 ~aIGSGgnyAl~AarAl~~~~--~lsA~eIa~~sl~iA~eiciyT 166 (178)
T COG5405 124 IAIGSGGNYALSAARALMENT--ELSAREIAEKSLKIAGDICIYT 166 (178)
T ss_pred EEEcCCchHHHHHHHHHHhcc--CCCHHHHHHHHHhhhheEEEec
Confidence 478899889998888887766 7899999999999999885554
No 64
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=27.81 E-value=86 Score=23.37 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHhhCCCCCHHHHHHHHh
Q 016716 173 GGSSNAATALWAANQFNGCVATEKELQEWSS 203 (384)
Q Consensus 173 SSSA~aaA~l~Aln~l~g~~ls~~eL~~la~ 203 (384)
+-.+.++|.++.+.+..+.+.+.+|+.+.+.
T Consensus 35 ~~~~iaAA~iY~acr~~~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 35 SPESIAAACIYLACRLNGVPRTLKEIAEAAG 65 (71)
T ss_dssp -HHHHHHHHHHHHHHHTTSSSSHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHcCCCcCHHHHHHHhC
Confidence 4578889999999999999999999987653
No 65
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=24.25 E-value=33 Score=27.56 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=17.8
Q ss_pred eeccccc-eeEeccCCCccchhhcccccchhhhh
Q 016716 320 MSGSGST-IVGIGSPDPPQFIYDDNEYEDVFLSE 352 (384)
Q Consensus 320 mSGSG~t-vfal~~~~~a~~i~~~~~~~~~f~~~ 352 (384)
|+=+|+| ++-+...+.|+++.+.++..|||=.+
T Consensus 35 l~v~~~tAilrF~~~~~A~RA~KRmegEdVfG~k 68 (90)
T PF11608_consen 35 LSVSGGTAILRFPNQEFAERAQKRMEGEDVFGNK 68 (90)
T ss_dssp EE--TT-EEEEESSHHHHHHHHHHHTT--SSSS-
T ss_pred EEEeCCEEEEEeCCHHHHHHHHHhhcccccccce
Confidence 3334444 44444447788888888888887554
No 66
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=23.40 E-value=66 Score=32.28 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.0
Q ss_pred CCCCCchHHHHHHHHHHHHHhh
Q 016716 168 GAGLGGGSSNAATALWAANQFN 189 (384)
Q Consensus 168 gaGLGSSSA~aaA~l~Aln~l~ 189 (384)
--|||||+|...+++.++...+
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl 173 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSL 173 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhh
Confidence 4699999999998887766655
No 67
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=22.21 E-value=1e+02 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 016716 176 SNAATALWAANQFNGCVATEKELQEWSSEIGS 207 (384)
Q Consensus 176 A~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~ 207 (384)
-+|+.++-++|+++|++.+.++|.+-|.+++.
T Consensus 187 ~AAa~vve~lnk~~~l~V~td~L~keAe~i~~ 218 (244)
T COG1938 187 RAAARVVEALNKMLGLNVDTDKLEKEAEEIEE 218 (244)
T ss_pred HHHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34667778999999999999999999988763
No 68
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.66 E-value=1.1e+02 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc
Q 016716 174 GSSNAATALWAANQFNGCVATEKELQEWSSEIGS 207 (384)
Q Consensus 174 SSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~ 207 (384)
.--.+++++.++++++|.+++.++|.+-|.++|.
T Consensus 182 DP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~ 215 (238)
T TIGR00161 182 DPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIES 215 (238)
T ss_pred CHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH
Confidence 3446788899999999999999999999988774
No 69
>PRK12449 acyl carrier protein; Provisional
Probab=20.91 E-value=2.7e+02 Score=21.02 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 016716 139 LIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEW 201 (384)
Q Consensus 139 li~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~l 201 (384)
+..+..+.+.+..+... -.+.-+-+...-||=-|-+.+..+.++.+.||..++.+++.++
T Consensus 6 i~~~l~~il~~~~~~~~---~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~ 65 (80)
T PRK12449 6 IFERLINLIQKQRSYLS---LAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDM 65 (80)
T ss_pred HHHHHHHHHHHHhCCCc---cccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhC
Confidence 33444555556666543 2466677778889999999999999999999999999988764
Done!