Query 016716
Match_columns 384
No_of_seqs 258 out of 1603
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyf_A 4-diphosphocytidyl-2-C- 100.0 1.5E-52 5.1E-57 408.3 21.6 262 73-342 5-277 (306)
2 1uek_A 4-(cytidine 5'-diphosph 100.0 1.2E-45 4.1E-50 353.2 20.7 271 74-377 2-274 (275)
3 2v8p_A 4-diphosphocytidyl-2-C- 100.0 1.8E-45 6.3E-50 351.6 21.1 252 73-340 4-259 (271)
4 2ww4_A 4-diphosphocytidyl-2C-m 100.0 7.1E-46 2.4E-50 357.3 18.2 251 73-341 2-259 (283)
5 3hul_A HSK, HK, homoserine kin 100.0 9.4E-41 3.2E-45 323.9 18.3 247 73-340 2-264 (298)
6 1h72_C HK, homoserine kinase; 100.0 1.9E-37 6.5E-42 298.3 17.9 248 73-339 2-273 (296)
7 2x7i_A Mevalonate kinase; tran 100.0 5.3E-35 1.8E-39 283.0 16.3 253 73-340 6-290 (308)
8 4hac_A Mevalonate kinase; GHMP 100.0 2.3E-34 7.7E-39 281.6 18.0 250 74-344 22-302 (321)
9 2hfs_A Mevalonate kinase, puta 100.0 3.9E-34 1.3E-38 279.7 16.7 255 73-342 13-308 (332)
10 1kkh_A Mevalonate kinase; mixe 100.0 2.7E-34 9.4E-39 279.0 13.4 260 71-343 3-303 (317)
11 1wuu_A Galactokinase; galactos 100.0 2E-33 6.8E-38 282.2 17.0 278 54-343 16-375 (399)
12 1pie_A Galactokinase; galactos 100.0 1.2E-32 4.2E-37 278.2 21.2 288 45-344 18-391 (419)
13 2oi2_A Mevalonate kinase; enzy 100.0 7.9E-33 2.7E-37 265.0 17.6 237 73-333 5-268 (292)
14 2cz9_A Probable galactokinase; 100.0 2.3E-32 7.8E-37 268.5 15.4 256 74-343 2-325 (350)
15 2hke_A Diphosphomevalonate dec 100.0 4.5E-32 1.6E-36 271.2 15.8 266 71-343 1-314 (380)
16 3qt5_A Mevalonate diphosphate 100.0 7.5E-32 2.6E-36 265.1 15.5 265 72-343 8-309 (332)
17 2gs8_A Mevalonate pyrophosphat 100.0 9.7E-32 3.3E-36 261.8 15.2 267 70-344 3-301 (317)
18 2pg9_A Phosphomevalonate kinas 100.0 3.5E-30 1.2E-34 253.5 14.9 253 73-343 3-318 (337)
19 3k85_A D-glycero-D-manno-hepto 100.0 1.2E-30 4.2E-35 258.8 7.6 263 73-345 3-321 (357)
20 2a2c_A N-acetylgalactosamine k 100.0 2.2E-28 7.6E-33 251.3 23.0 277 54-344 35-445 (478)
21 1fi4_A Mevalonate 5-diphosphat 100.0 1E-28 3.4E-33 249.8 17.4 267 71-343 23-343 (416)
22 1kvk_A MK, mevalonate kinase; 99.9 5.9E-27 2E-31 234.7 16.2 253 73-340 5-353 (395)
23 3k17_A LIN0012 protein; protei 99.9 1.1E-26 3.7E-31 231.1 17.0 253 73-342 6-338 (365)
24 3lto_A Mevalonate diphosphate 99.9 5.6E-24 1.9E-28 207.9 18.1 258 78-343 5-304 (323)
25 3gon_A Phosphomevalonate kinas 99.9 4.2E-24 1.4E-28 207.6 13.9 253 73-342 1-315 (335)
26 3v2u_C Protein GAL3; rossmann 99.8 6.5E-20 2.2E-24 189.5 16.1 182 56-247 21-254 (520)
27 3f0n_A Mevalonate pyrophosphat 99.8 5.8E-20 2E-24 183.9 13.3 262 73-343 23-340 (414)
No 1
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=100.00 E-value=1.5e-52 Score=408.30 Aligned_cols=262 Identities=27% Similarity=0.404 Sum_probs=229.7
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC---CCCCCCCChHHHHHHHHHHH
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV---PGIPVDDSNLIIKALNLYRK 149 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~---~~lp~d~~Nli~ka~~~~~~ 149 (384)
.++++|||||||||+|+|+|+||||.|.|+|++|++||++++++.+. ..+++.. .++|.+++|++++|++.+++
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~---~~i~~~g~~~~~~p~~~~Nlv~~A~~~l~~ 81 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADV---LSLELVGEGADQLPTDERNLAWQAAELMAE 81 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSS---CEEEEESTTGGGSCCSTTSHHHHHHHHHHH
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCC---CEEEEeCCCccCCCCCCccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999998653 3344332 35788889999999999999
Q ss_pred HcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeee
Q 016716 150 KTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQD 229 (384)
Q Consensus 150 ~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~ 229 (384)
+++...|++|+++|+||.|+|||||||+++|++.|+|++++.++++++|+++|.++|.|+|+|++||+++..|+|+.+.+
T Consensus 82 ~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~Dv~~~~~Gg~~~~~g~ge~~~~ 161 (306)
T 3pyf_A 82 HVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTALGTGRGEELAT 161 (306)
T ss_dssp HTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTHHHHHHBSEEEECSSSSCCEE
T ss_pred HhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCceeecCceEEEEeeCCeEEE
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCCCccEEEEcCCCCcchHHHHhhhcccc----CCCC-CHHHHHHHHHhCCCch--HHHhccccccccccchHHHH
Q 016716 230 IPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQ----TTKV-DPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKR 302 (384)
Q Consensus 230 l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~----~~~~-d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~ 302 (384)
++. |++|++|+++|++.++|+++|+.++... .... ....++.++.++|+.. ..+.|+||+++...+|++++
T Consensus 162 l~~--~~~~~~vl~~P~~~vsT~~a~~~l~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~l~n~le~~~~~~~P~l~~ 239 (306)
T 3pyf_A 162 VLS--RNTFHWVLAFADSGLLTSAVYNELDRLREVGDPPRLGEPGPVLAALAAGDPDQLAPLLGNEMQAAAVSLDPALAR 239 (306)
T ss_dssp ECC--SSCEEEEEEECSSCCCHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHTCHHHHGGGCEETTHHHHHHHCTHHHH
T ss_pred ccC--CCCcEEEEEECCCCCcHHHHHHhhhhhccccccccccCHHHHHHHHHhCCHHHHHHHhccchHHHHHHhChHHHH
Confidence 753 3579999999999999999999987521 1222 3556888999988754 46779999999888999999
Q ss_pred HHHHHHHcCCCCCCceeeeccccceeEeccCC-Cccchhhc
Q 016716 303 LKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYDD 342 (384)
Q Consensus 303 l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~ 342 (384)
+++.++++|+ +|+.|||||||||++++++ .++++.+.
T Consensus 240 i~~~~~~~Ga---~ga~mSGsGptvfal~~~~~~a~~~~~~ 277 (306)
T 3pyf_A 240 ALRAGVEAGA---LAGIVSGSGPTCAFLCTSASSAIDVGAQ 277 (306)
T ss_dssp HHHHHHHTTC---SEEEECTTSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcCC---CEEEEcCcchhheEEeCCHHHHHHHHHH
Confidence 9999999998 8999999999999999873 34444443
No 2
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=100.00 E-value=1.2e-45 Score=353.22 Aligned_cols=271 Identities=30% Similarity=0.464 Sum_probs=222.1
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcCC
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTES 153 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g~ 153 (384)
+++ |||||||||+|+|+|.||||.+.+++++|++||++++++. . +.+.++. .+| ++|+++++++.++++++.
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~--~--~~i~~~~-~~~--~~n~v~~a~~~~~~~~g~ 73 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV--S--SGLHFQG-PYG--RENLAYRAASLYLEAAGQ 73 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE--S--SCEEEES-TTG--GGSHHHHHHHHHHHHTTC
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC--c--EEEEEcC-CCC--CccHHHHHHHHHHHHhCC
Confidence 567 9999999999999999999999999999999999999972 2 3454443 455 579999999999999888
Q ss_pred CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCCC
Q 016716 154 DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPPP 233 (384)
Q Consensus 154 ~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~~ 233 (384)
..+++|+++|+||.|+|||||||+++|++.|+|++++.++ +|+++|.++|+|+|++++||+++..++|+.+++++
T Consensus 74 ~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv~~~~~Gg~~~~~g~g~~~~~l~-- 148 (275)
T 1uek_A 74 PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFFLLGRGAEARGVGERLKPLA-- 148 (275)
T ss_dssp CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHHHHCSEEEEETTTTEEEEEC--
T ss_pred CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCChHHHhcCCeEEEEccCceeEEcc--
Confidence 7899999999999999999999999999999999999998 99999999999999999999999999999888886
Q ss_pred CCCCccEEEEcCCCCcchHHHHhhhccccC-CCCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHHHHHcCC
Q 016716 234 IPLDVPMVLIKPREACPTAEVYKHLRLDQT-TKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGR 312 (384)
Q Consensus 234 ~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~-~~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~l~~~Ga 312 (384)
. +++++++++|++.++|+++|+.++.... ...+...++.+|.++ +....+ |+||++++..+|+++++++.+++.|+
T Consensus 149 ~-~~~~~vl~~p~~~~sT~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~-n~l~~~~~~~~p~l~~l~~~~~~~Ga 225 (275)
T 1uek_A 149 L-PPVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLPVEAILEALARG-EEPPYW-NSLEGPAFRLFPELKEVRGRMRALGL 225 (275)
T ss_dssp C-CCEEEEEEECCCCCCHHHHHHTCCGGGCCCCCCHHHHHHHHHHT-CCCSCC-BTTHHHHHHHCTHHHHHHHHHHHTTC
T ss_pred C-CCcEEEEEeCCCCCchHHHHHhCchhhcccCCChHHHHHHHHhc-cccccc-cchHHHHHHhChHHHHHHHHHHhCCC
Confidence 3 3799999999999999999999874323 344556677888877 433334 99998888889999999999999998
Q ss_pred CCCCceeeeccccceeEeccCC-CccchhhcccccchhhhhhHHHhhcCCceEEeccccCCCCCCC
Q 016716 313 GQYDAVFMSGSGSTIVGIGSPD-PPQFIYDDNEYEDVFLSEARFITREVNQWYRESASTNACSEPP 377 (384)
Q Consensus 313 ~~~~ga~mSGSG~tvfal~~~~-~a~~i~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 377 (384)
+|++|||||||+|++++++ .++++.+.++ +.. .+|+...+...++|.|
T Consensus 226 ---~ga~~SGsG~~v~~l~~~~~~~~~~~~~l~-------------~~~-~~~~~~~~~g~~~~~~ 274 (275)
T 1uek_A 226 ---RGVLMSGSGSAFFGLAEGPDHARRAAEALR-------------AWG-RAWAGTLGGGDAGSGP 274 (275)
T ss_dssp ---EEEEECTTSSCEEEECSSHHHHHHHHHHHT-------------TTS-EEEEEEECCC------
T ss_pred ---CEEEEeccccCeEEEeCCHHHHHHHHHHhh-------------hcc-EEEEEEecCCCCCCCC
Confidence 8999999999999999863 3433333222 112 4566666666665554
No 3
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=100.00 E-value=1.8e-45 Score=351.60 Aligned_cols=252 Identities=29% Similarity=0.403 Sum_probs=216.7
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHcC
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTE 152 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~g 152 (384)
+++++|||||||+|+|.|+|.||||.+.+++++|++||++ +++ +. .+.+.. ..+|.+++|+++++++.++++++
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~-~~--~i~i~~--~~~~~~~~nlv~~a~~~~~~~~g 77 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR-EG--VLRVET--NIGIPQEENLVYKGLREFERITG 77 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE-ES--SCEEEE--SSCCCTTTCHHHHHHHHHHHHHC
T ss_pred eEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe-CC--eEEEEe--CCCCCCCchHHHHHHHHHHHHhC
Confidence 3788999999999999999999999999999999999999 987 22 355554 45677789999999999999988
Q ss_pred CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCceeeeCCC
Q 016716 153 SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEVVQDIPP 232 (384)
Q Consensus 153 ~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~l~~l~~ 232 (384)
...+++|+++|+||.|+|||||||+++|++.|+|++++.+++.+||+++|.++|+|+|++++||+++..|+|+.+.+++
T Consensus 78 ~~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~~~~gg~~~~~g~g~~~~~l~- 156 (271)
T 2v8p_A 78 IEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAIGRGKGEVLEPVE- 156 (271)
T ss_dssp CCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTCSEEEEETTTTEEEECC-
T ss_pred CCCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHHhcCCeEEEEEcCCEEEEcc-
Confidence 8789999999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred CCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCch--HHHhccccccccccchHHHHHHHHHHHc
Q 016716 233 PIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQ--DVCINDLEAPAFQVLPSLKRLKQRIIAA 310 (384)
Q Consensus 233 ~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~--~~~~NdLe~~~~~~~p~l~~l~~~l~~~ 310 (384)
+|.++++++++|++.++|+++|+.++.... .....+ .++.++|+.. ..+.|+|+..+...+|+++++++.+++.
T Consensus 157 -~~~~~~~vl~~p~~~~sT~~~~~~~~~~~~--~~~~~~-~al~~~d~~~~~~~~~n~l~~~~~~~~p~l~~~~~~~~~~ 232 (271)
T 2v8p_A 157 -TEISGKITLVIPQVSSSTGRVYSSLREEHF--VTPEYA-EEKIQRIISGEVEEIENVLGDIARELYPEINEVYRFVEYL 232 (271)
T ss_dssp -CCCCSEEEEEECSSCCCHHHHHHTCCTTSC--CCHHHH-HHHHHHHHTTCGGGCCBHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred -CCCCcEEEEEeCCCCCCHHHHHHhcccccC--cchhHH-HHhhcCCHHHHHHHHhCChhhHhHHhChHHHHHHHHHHhC
Confidence 343789999999999999999998875421 223334 7887776543 4567999777777899999999999988
Q ss_pred CCCCCCcee-eeccccceeEeccCC-Cccchh
Q 016716 311 GRGQYDAVF-MSGSGSTIVGIGSPD-PPQFIY 340 (384)
Q Consensus 311 Ga~~~~ga~-mSGSG~tvfal~~~~-~a~~i~ 340 (384)
|+ ++ |||||||+|++++++ .++++.
T Consensus 233 Ga-----a~~mSGsG~~v~~l~~~~~~a~~~~ 259 (271)
T 2v8p_A 233 GF-----KPFVSGSGSTVYFFGGASEELKKAA 259 (271)
T ss_dssp TC-----CCEECTTSSCEEESSCCCHHHHHHH
T ss_pred CC-----ccCccccCcCeEEEeCCHHHHHHHH
Confidence 73 78 999999999999864 344443
No 4
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=100.00 E-value=7.1e-46 Score=357.27 Aligned_cols=251 Identities=31% Similarity=0.479 Sum_probs=209.0
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHc-
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKT- 151 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~- 151 (384)
++.++|||||||||+|+|+|.||||.+.+++++|++||++++++.++. .+.+.+....+|. ++|+++++++.+++++
T Consensus 2 ~~~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~-~i~i~~~~~~~~~-~~nlv~~a~~~~~~~~~ 79 (283)
T 2ww4_A 2 RTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDG-DIRLLTPVEGVEH-EDNLIVRAARLLMKTAA 79 (283)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSS-CEEECSCBTTBCG-GGSHHHHHHHHHHHHHH
T ss_pred CccccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCC-cEEEEeCCCCCCC-cccHHHHHHHHHHHHhh
Confidence 366789999999999999999999999999999999999999986542 2445433334553 5799999999999887
Q ss_pred -----CCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCCce
Q 016716 152 -----ESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRGEV 226 (384)
Q Consensus 152 -----g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~Ge~ 226 (384)
+...|++|+++|+||.|+|||||||+++|++.|+|+++|.++++++|+++|.++|+|+|++++||+++..++|+.
T Consensus 80 ~~~~~g~~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~dv~~~~~gg~~~~~g~g~~ 159 (283)
T 2ww4_A 80 DSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEI 159 (283)
T ss_dssp HTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTHHHHHHTBCEEEETTTTE
T ss_pred hhcccCCCCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHhhcCCeEEEEecCcc
Confidence 877899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCHHHHHHHHHhCCCchHHHhccccccccccchHHHHHHHH
Q 016716 227 VQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQR 306 (384)
Q Consensus 227 l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~~~ll~al~~~d~~~~~~~NdLe~~~~~~~p~l~~l~~~ 306 (384)
+.+++ +| ++++++++|++.++|+++|+..+ ....+....+.++.+++ +.||+|+++...+|+++++++.
T Consensus 160 ~~~l~--~~-~~~~vl~~p~~~~sT~~~~~~~~---~~~~~~~~~l~~l~~~~-----~~nd~~~~~~~~~p~l~~i~~~ 228 (283)
T 2ww4_A 160 LTPVD--PP-EKWYLVAHPGVSIPTPVIFKDPE---LPRNTPKRSIETLLKCE-----FSNDCEVIARKRFREVDAVLSW 228 (283)
T ss_dssp EEECC--CC-CCEEEEECCSCCCCHHHHHTCTT---SCCCCCCCCHHHHHTSC-----CCBTTHHHHHHHCHHHHHHHHH
T ss_pred ceEcC--CC-CcEEEEEeCCCCCchHHHHhccc---ccccchHHHHHHHHhhh-----hcCchHHHHHhcChHHHHHHHH
Confidence 88874 44 68999999999999999999843 12222212233455443 3689999998889999999999
Q ss_pred HHHcCCCCCCceeeeccccceeEeccCC-Cccchhh
Q 016716 307 IIAAGRGQYDAVFMSGSGSTIVGIGSPD-PPQFIYD 341 (384)
Q Consensus 307 l~~~Ga~~~~ga~mSGSG~tvfal~~~~-~a~~i~~ 341 (384)
+++.| +++|||||||+|++++++ .++++.+
T Consensus 229 ~~~~G-----~a~~SGsG~tvf~l~~~~~~a~~~~~ 259 (283)
T 2ww4_A 229 LLEYA-----PSRLTGTGACVFAEFDTESEARQVLE 259 (283)
T ss_dssp HHTTS-----CEEECTTSSCEEEEESSHHHHHHHHH
T ss_pred HHHcC-----CceECCcccceEEEeCCHHHHHHHHH
Confidence 98766 479999999999999863 2444443
No 5
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=100.00 E-value=9.4e-41 Score=323.91 Aligned_cols=247 Identities=19% Similarity=0.222 Sum_probs=193.6
Q ss_pred eEEEEcceeE-EecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeC-CCCCCCCChHHHHHHHHHHHH
Q 016716 73 RLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV-PGIPVDDSNLIIKALNLYRKK 150 (384)
Q Consensus 73 ~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~-~~lp~d~~Nli~ka~~~~~~~ 150 (384)
++++++||+. || ++||+.|+ ++|++||+|++++..+ .+.++++. ..+|.+++|++++|++.+++
T Consensus 2 m~~v~vPat~anl--------G~Gfd~lg---~al~l~d~v~~~~~~~--~~~i~~~~~~~~p~~~~nlv~~a~~~~~~- 67 (298)
T 3hul_A 2 SLRIRVPATTANL--------GPGFDSCG---LALTLYLTLDIGAEAD--SWYIEHNIGGGIPHDETNVIIETALNLAP- 67 (298)
T ss_dssp CEEEEEEEEEESC--------TTCTTTEE---EEEEEEEEEEEEEECS--SCEEECCCCTTCCSSTTSHHHHHHHHHCT-
T ss_pred eEEEEEeeceecc--------CCCcchhh---hhcccceEEEEEEcCC--ceEEEecCcccCCCCCCcHHHHHHHHHhc-
Confidence 3899999999 99 88999777 9999999999975322 35666543 46788889999999999876
Q ss_pred cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---CcceeecCCeEEEccCCcee
Q 016716 151 TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---DIPFFFSHGAAYCTGRGEVV 227 (384)
Q Consensus 151 ~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---Dvp~~~~GG~a~~~g~Ge~l 227 (384)
...|++|+++|+||.++|||||||+++|++.|+|++++.+++++||+++|.++|+ |+|+|++||+++..++|+.+
T Consensus 68 --~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~ddv~~~~~GG~~~~~g~ge~~ 145 (298)
T 3hul_A 68 --NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVVGAKLDGED 145 (298)
T ss_dssp --TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTTHHHHHHCSEEEEEEETTEE
T ss_pred --cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCcccCcccccCCEEEEEeCCCcE
Confidence 3468999999999999999999999999999999999999999999999999997 89999999999999999876
Q ss_pred eeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC-------HHHHHHHHHhCCCch--HHHhccc--ccccccc
Q 016716 228 QDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD-------PLTLLEQISRNGLSQ--DVCINDL--EAPAFQV 296 (384)
Q Consensus 228 ~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d-------~~~ll~al~~~d~~~--~~~~NdL--e~~~~~~ 296 (384)
...+.++| ++++++++|++.++|+++|+.++.. .+..+ ...++.++.++|+.. ..+.||+ |+++...
T Consensus 146 ~~~~~~~p-~~~~vlv~p~~~~sT~~a~~~l~~~-~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~~~ 223 (298)
T 3hul_A 146 FYVRHLFP-DCALIAFIPKAELLTSESRGVLPDT-LPFKEAVQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQL 223 (298)
T ss_dssp EEEEECCC--CEEEEEECCCCCC--------CCE-EEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----CTT
T ss_pred EEEEcCCC-CeEEEEEECCCCCCcHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHHhh
Confidence 53333345 5899999999999999999988753 11111 123567888888654 4667774 8899889
Q ss_pred chHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCCCccchh
Q 016716 297 LPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIY 340 (384)
Q Consensus 297 ~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~ 340 (384)
+|+++++++.+++.|+ +|++|||||||+|++++.+.++++.
T Consensus 224 ~p~l~~l~~~~~~~Ga---~ga~~SGsGptv~al~~~~~a~~v~ 264 (298)
T 3hul_A 224 VPHLAQIRDVAKNQGA---YAACLSGAGPTVLVFAPRNLANKLQ 264 (298)
T ss_dssp GGGHHHHHHHHHTTTC---CEEEECTTSSCEEEEECGGGHHHHH
T ss_pred CchHHHHHHHHHHCCC---EEEEEeccchheEEEECHHHHHHHH
Confidence 9999999999999998 8999999999999999854444443
No 6
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=100.00 E-value=1.9e-37 Score=298.27 Aligned_cols=248 Identities=18% Similarity=0.206 Sum_probs=200.6
Q ss_pred eEEEEcceeE-EecccccCccCCCcccccccccccCc-ccEEEEEeCCCCCceEEEeeCCCCCCC-CChHHHHHHHHHHH
Q 016716 73 RLTLFSPCKI-NAFLRITNKREDGFHDLASLFHVISL-GDTIKFSLSPLKSRDRLSTNVPGIPVD-DSNLIIKALNLYRK 149 (384)
Q Consensus 73 ~~~v~aPAKi-NL~L~I~g~~~dGyh~L~sl~~~I~l-~d~v~i~~~~~~~~~~l~~~~~~lp~d-~~Nli~ka~~~~~~ 149 (384)
.++++||||+ || ++|||.++ .++|. ++++++++.++. .+.+.++...+|.+ +.|+++++++.+++
T Consensus 2 ~i~v~aPaki~nl--------G~g~~vl~---~a~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~n~v~~a~~~~~~ 69 (296)
T 1h72_C 2 KVRVKAPCTSANL--------GVGFDVFG---LCLKEPYDVIEVEAIDDK-EIIIEVDDKNIPTDPDKNVAGIVAKKMID 69 (296)
T ss_dssp EEEEEEEEEEECT--------GGGTTTEE---EEEEEEEEEEEEEEESSS-SEEEEESCTTSCCCTTTSHHHHHHHHHHH
T ss_pred eEEEEEEeehhcc--------ccchhhhH---HhcccccEEEEEEecCCC-eEEEEEcCCcCCCCCccCcHHHHHHHHHH
Confidence 4789999999 88 56888777 78876 677777765432 25555554556766 78999999999999
Q ss_pred HcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---------CcceeecCCeEEE
Q 016716 150 KTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---------DIPFFFSHGAAYC 220 (384)
Q Consensus 150 ~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---------Dvp~~~~GG~a~~ 220 (384)
+++...|++|+++|+||.|+|||||||+++|++.|+|+++|.++++++|+++|.++|. |+|++++||+++.
T Consensus 70 ~~g~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~ 149 (296)
T 1h72_C 70 DFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMV 149 (296)
T ss_dssp HTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEE
T ss_pred HhCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhCCEEEE
Confidence 9888789999999999999999999999999999999999999999999999999998 9999999999988
Q ss_pred ccCCce-eeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCCH-------HHHHHHHHhCCCch--HHH-hccc
Q 016716 221 TGRGEV-VQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDP-------LTLLEQISRNGLSQ--DVC-INDL 289 (384)
Q Consensus 221 ~g~Ge~-l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~-------~~ll~al~~~d~~~--~~~-~NdL 289 (384)
.+.++. +.+++. |+++++++++|++.++|+++++.++.. ....+. ..++.+|.++|+.. ..+ .|++
T Consensus 150 ~~~~~~~~~~~~~--~~~~~~vl~~p~~~~~T~~~~~~l~~~-~~~~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~ 226 (296)
T 1h72_C 150 TNYEPLEVLHIPI--DFKLDILIAIPNISINTKEAREILPKA-VGLKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKV 226 (296)
T ss_dssp EETTTTEEEEECC--CSCCCEEEECCSSCCCHHHHHHTSCSC-CCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCS
T ss_pred EeCCceEEEEEcC--CCCeEEEEEeCCCCccHHHHHHhccCc-CcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc
Confidence 765553 566653 447999999999999999999988753 111111 23567788888654 345 6888
Q ss_pred -cccccccchHHHHHHHHHHHcCCCCCCceeeeccccceeEeccCCCccch
Q 016716 290 -EAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFI 339 (384)
Q Consensus 290 -e~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i 339 (384)
|+++...+|+++++++.+++. + +|++|||||||+|++++.+.++++
T Consensus 227 h~~~~~~~~p~l~~~~~~~~~~-a---~ga~~sGsG~~v~~l~~~~~~~~~ 273 (296)
T 1h72_C 227 IEPVRGKLIPNYFKIKEEVKDK-V---YGITISGSGPSIIAFPKEEFIDEV 273 (296)
T ss_dssp SHHHHHTTSTTHHHHHHHHTTT-E---EEEEECTTSSCEEEEECGGGHHHH
T ss_pred hhhhhhccCccHHHHHHHHHhh-c---ceEEEecCChheEEEecHHHHHHH
Confidence 888887899999999999877 5 799999999999999943334333
No 7
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=5.3e-35 Score=282.95 Aligned_cols=253 Identities=15% Similarity=0.103 Sum_probs=189.1
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcc-cEEEEEeCCCCCc-eEEEeeC--CCCCC--CCChHHHHHHHH
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLG-DTIKFSLSPLKSR-DRLSTNV--PGIPV--DDSNLIIKALNL 146 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~-d~v~i~~~~~~~~-~~l~~~~--~~lp~--d~~Nli~ka~~~ 146 (384)
.++++||||||| .|+|.| ||...+++++|+++ +++++++.++. . +.+.+.. ..++. ++.|++.++++.
T Consensus 6 ~~~~~APgkinL----~Ge~~d-~~g~~~l~~ai~~~~~~v~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 79 (308)
T 2x7i_A 6 KGYGESTGKIIL----IGEHAV-TFGEPAIAVPFNAGKIKVLIEALESG-NYSSIKSDVYDGMLYDAPDHLKSLVNRFVE 79 (308)
T ss_dssp EEEEEEEEEEEE----EEBTTC-CTTSCEEEEEEEEEEEEEEEEECCTT-CCCEEEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred ceEEEEeeEEEE----EecCee-ecCCeEEEEEEcCCEEEEEEEECCCC-CeeEEEecCCCCChhhhhHHHHHHHHHHHH
Confidence 488999999999 599998 77777888999985 99999987543 2 4454322 12432 457999999988
Q ss_pred HHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhc---------ccCcceeecCCe
Q 016716 147 YRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEI---------GSDIPFFFSHGA 217 (384)
Q Consensus 147 ~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~i---------e~Dvp~~~~GG~ 217 (384)
+++.+ .|++|+++|+||.|+|||||||+++|++.|++++++.++++++|+++|.++ |.|++++..||+
T Consensus 80 ~~~~~---~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~~~~~g~~ 156 (308)
T 2x7i_A 80 LNNIT---EPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKP 156 (308)
T ss_dssp HTTCC---SCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTSC
T ss_pred HHhhC---CCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchHHHHHhhCCce
Confidence 86643 389999999999999999999999999999999999999999999999999 458899888998
Q ss_pred EEEccCCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC---H-------HHHHHHHHhCCCch-HHHh
Q 016716 218 AYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD---P-------LTLLEQISRNGLSQ-DVCI 286 (384)
Q Consensus 218 a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d---~-------~~ll~al~~~d~~~-~~~~ 286 (384)
++.. +|+.+++++.+ .++.++|++|+..++|+++++.++.......+ . ..++.+|.++|+.. ..+.
T Consensus 157 ~~~~-~g~~~~~~~~~--~~~~~vi~~~~~~~sT~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~ 233 (308)
T 2x7i_A 157 VWFQ-KGHAETLKTLS--LDGYMVVIDTGVKGSTRQAVHDVHKLCEDPQYMSHVKHIGKLVLRASDVIEHHKFEALADIF 233 (308)
T ss_dssp EEEE-TTEEEECSCCC--BSSEEEEEECCC--CCSCCCC--------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEE-cCCCceEeccC--CCceEEEEECcCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8766 67777776543 36789999999999999998887643111111 1 12346787777643 2233
Q ss_pred cccccccc---ccchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccC-CCccchh
Q 016716 287 NDLEAPAF---QVLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSP-DPPQFIY 340 (384)
Q Consensus 287 NdLe~~~~---~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~-~~a~~i~ 340 (384)
|+++.... ..+|+++++++.+++.|+ +|++|||||+ |+|+++++ +.++++.
T Consensus 234 ~~~~~~~~~~~~~~p~l~~l~~~~~~~Ga---~ga~~sGaG~GG~v~~l~~~~~~~~~~~ 290 (308)
T 2x7i_A 234 NECHADLKALTVSHDKIEQLMKIGKENGA---IAGKLTGAGRGGSMLLLAKDLPTAKNIV 290 (308)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHTTC---SEEEESBTTTCSSEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHCCC---cEEEeeccCCCcEEEEEeCChhHHHHHH
Confidence 55532222 268999999999999998 8999999999 99999986 3344333
No 8
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=2.3e-34 Score=281.60 Aligned_cols=250 Identities=17% Similarity=0.220 Sum_probs=190.6
Q ss_pred EEEEcceeEEecccccCccCC--CcccccccccccCcccEEEEEeCCCCCceEEEeeC--CCCCCCCChHHHHHHHHHHH
Q 016716 74 LTLFSPCKINAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV--PGIPVDDSNLIIKALNLYRK 149 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~--~~lp~d~~Nli~ka~~~~~~ 149 (384)
++++|||||||+ |+|.+ |+ .+++++|++|+++++++.+. +++.+.. .+++.+.+|++.+++..+.+
T Consensus 22 i~~~APgkinL~----GeH~~~~Gg---~~l~~aI~~~~~v~v~~~~~---i~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (321)
T 4hac_A 22 VSCSAPGKIYLF----GEHAVVYGE---TAIACAVELRTRVRAELNDS---ITIQSQIGRTGLDFEKHPYVSAVIEKMRK 91 (321)
T ss_dssp EEEEEEEEEEEE----CTTTGGGTC---CEEEEEEEEEEEEEEEECSS---EEEEETTEEESSCTTTSHHHHHHHHHHTT
T ss_pred EEEEeeEEEEEE----ccCEEEcCC---EEEEEEeccCEEEEEEECCC---EEEEECCCCcccccchhHHHHHHHHHHHH
Confidence 889999999994 66654 33 46779999999999997542 5555432 24566667888877776654
Q ss_pred HcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------cCcceeecCCeEEE
Q 016716 150 KTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---------SDIPFFFSHGAAYC 220 (384)
Q Consensus 150 ~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---------~Dvp~~~~GG~a~~ 220 (384)
++...|++|+++|+||.|+|||||||+++|++.|++++++.+++.++|+++|.++| .|++++++||+++.
T Consensus 92 -~~~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg~~~~ 170 (321)
T 4hac_A 92 -SIPINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFGGVVTI 170 (321)
T ss_dssp -TSCCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCSEEEE
T ss_pred -hCCCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHcCCeEEE
Confidence 45567999999999999999999999999999999999999999999999999998 58999999999888
Q ss_pred ccCCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCCC------------HHHHHHHHHhCCCch--HHHh
Q 016716 221 TGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVD------------PLTLLEQISRNGLSQ--DVCI 286 (384)
Q Consensus 221 ~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d------------~~~ll~al~~~d~~~--~~~~ 286 (384)
+.++.++ +| ++++++++|+..++|+++++.++......++ ...++.+|.++|+.. ..+.
T Consensus 171 -~~~~~l~-----~p-~~~~vlv~p~~~~sT~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~ 243 (321)
T 4hac_A 171 -PERRKLK-----TP-DCGIVIGDTGVFSSTKELVANVRQLRESYPDLIEPLMTSIGKISRIGEQLVLSGDYASIGRLMN 243 (321)
T ss_dssp -TTCCEEC-----CC-CCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -cCCceec-----cC-CCEEEEEECCCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7776554 34 6899999999999999998775431111100 112457888888654 2221
Q ss_pred --ccccccccccchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccCCCccchhhccc
Q 016716 287 --NDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 287 --NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~~~a~~i~~~~~ 344 (384)
+++.......+|+++++++.+++.|+ +|++|||||| |+|++++.+.++++.+.++
T Consensus 244 ~~~~~~~~~~v~~p~l~~l~~~a~~~Ga---~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~ 302 (321)
T 4hac_A 244 VNQGLLDALGVNILELSQLIYSARAAGA---FGAKITGAGGGGCMVALTAPEKCNQVAEAVA 302 (321)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHTTC---SEEEECSSCSSSEEEEEECSTTHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHCCC---CEEEECccCCCCEEEEEcCHHHHHHHHHHHH
Confidence 12221122358999999999999998 8999999998 9999996566666655443
No 9
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=3.9e-34 Score=279.65 Aligned_cols=255 Identities=16% Similarity=0.129 Sum_probs=194.7
Q ss_pred eEEEEcceeEEecccccCccCCCcccc----cccccccCcccEEEEEeCCCCCceEEEeeCCCCCC---CCChHHHHHHH
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDL----ASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPV---DDSNLIIKALN 145 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L----~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~lp~---d~~Nli~ka~~ 145 (384)
.++++|||||||+ |||.+ .+++++|++|+++++++.++...+.+......+|. ++.|++.++++
T Consensus 13 ~~~~~ApgKi~L~---------Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 83 (332)
T 2hfs_A 13 TGKNIGYGKVILF---------GEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRPAIPGYIAQKRDEQIKAHQ 83 (332)
T ss_dssp CSCCEEEEEEEEE---------CTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCCCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeEEEEEe---------cCCEEEcCCeEEEEEecccEEEEEEEcCCCCCeEEEecCccccccccccchhHHHHHH
Confidence 4778999999994 55555 67889999999999997642112444333233443 35689999999
Q ss_pred HHHHHcCCC---CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---------Ccceee
Q 016716 146 LYRKKTESD---NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---------DIPFFF 213 (384)
Q Consensus 146 ~~~~~~g~~---~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---------Dvp~~~ 213 (384)
.++++++.. .|++|+++|+||.|+|||||||+++|++.|++++++.++++++|+++|.++|. |+++++
T Consensus 84 ~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~~~ 163 (332)
T 2hfs_A 84 LVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAAT 163 (332)
T ss_dssp HHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHH
T ss_pred HHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHHHh
Confidence 999988864 58999999999999999999999999999999999999999999999977662 888999
Q ss_pred cCCeEEE-ccCCc-eeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCC------------CHHHHHHHHHhCC
Q 016716 214 SHGAAYC-TGRGE-VVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKV------------DPLTLLEQISRNG 279 (384)
Q Consensus 214 ~GG~a~~-~g~Ge-~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~------------d~~~ll~al~~~d 279 (384)
+||+++. .+.|+ .+.+++. |+++++++++|+..++|+++++.+........ ....+..+|.++|
T Consensus 164 ~Gg~~~~~~~~g~~~~~~~~~--~~~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d 241 (332)
T 2hfs_A 164 YGGLILYRRQNGKSVFKPIAF--QQRLYLVVVGTGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQKGD 241 (332)
T ss_dssp HCEEEEEEECSSSEEEEEECC--CSCEEEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCeEEEecCCCCcceeeecC--CCCcEEEEEECCCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998777 46666 5666653 34799999999999999999876542110000 0123457788887
Q ss_pred Cch--HHH---hccccccccccchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccCC-Cccchhhc
Q 016716 280 LSQ--DVC---INDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSPD-PPQFIYDD 342 (384)
Q Consensus 280 ~~~--~~~---~NdLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~~-~a~~i~~~ 342 (384)
+.. ..+ ++.++++. ..+|+++++++.+++.|+ +|++|||||| |+|++++++ .++++.+.
T Consensus 242 ~~~l~~~~~~~~~~l~~~~-~~~p~l~~l~~~~~~~Ga---~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~ 308 (332)
T 2hfs_A 242 LQRLGQLMNANHDLCRQID-VSCRELESIVQTCRTYGA---LGAKLSGTGRGGIAVALAASSDQRDAIVKG 308 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTTC---SEEEEESSCSSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCC---ceEEeccCCCCcEEEEEecCcccHHHHHHH
Confidence 643 233 34567664 468999999999999998 8999999999 999999864 34444443
No 10
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=2.7e-34 Score=279.00 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=188.9
Q ss_pred ceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCC------C----CCCCCChH-
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP------G----IPVDDSNL- 139 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~------~----lp~d~~Nl- 139 (384)
++.++++|||||||++.+... +|||. ++++|++|+++++++.++. .+.+..... . ++.++.|+
T Consensus 3 ~~~~~~~APgki~L~geh~~~--~G~~~---l~~ai~~~~~v~v~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (317)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVV--YGYRA---ISMAIDLTSTIEIKETQED-EIILNLNDLNKSLGLNLNEIKNINPNNFG 76 (317)
T ss_dssp TCCEEEEEEEEEEEECTTGGG--GTCCE---EEEEEEEEEEEEEEECCSS-EEEEEETTTTEEEEEETTTGGGCCGGGSG
T ss_pred CCCEEEEccEEEEEEcCCeeE--cCCEE---EEEEecCeEEEEEEECCCC-eEEEEeCCCCCceEEEeccCCccCcccch
Confidence 456889999999997765554 58994 4599999999999986542 244433211 0 23333444
Q ss_pred -HHHHHHHHHH---HcC--CCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc-------
Q 016716 140 -IIKALNLYRK---KTE--SDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG------- 206 (384)
Q Consensus 140 -i~ka~~~~~~---~~g--~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie------- 206 (384)
+.++++.+.+ +++ ...|++|+++|+||.|+|||||||+++|++.|++++++.+++.++|+++|.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~ 156 (317)
T 1kkh_A 77 DFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKA 156 (317)
T ss_dssp GGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 7777776654 244 246999999999999999999999999999999999999999999999999984
Q ss_pred --cCcceeecCCeEEEccCCceeeeCCCCCCC----CccEEEEcCCCCcchHHHHhhhccccCCCCCH----HH-HHHHH
Q 016716 207 --SDIPFFFSHGAAYCTGRGEVVQDIPPPIPL----DVPMVLIKPREACPTAEVYKHLRLDQTTKVDP----LT-LLEQI 275 (384)
Q Consensus 207 --~Dvp~~~~GG~a~~~g~Ge~l~~l~~~~p~----~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~d~----~~-ll~al 275 (384)
.|++++++||+++. +++.+++++.++|. ++++++++|+..++|+++++.++.. ....+. .. +.+++
T Consensus 157 sg~D~~~~~~Gg~~~~--~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~~~~~~~~-~~~~~~~~~~~~~~~~a~ 233 (317)
T 1kkh_A 157 SITDTSTITYKGILEI--KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKI-ENKDEIFKEIDKVIDEAL 233 (317)
T ss_dssp CSHHHHHHHHCSEEEE--SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTC-TTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCeEEE--cCCCceEecCCcccccccCcEEEEEECCCcCcHHHHHHHHHHh-hccHHHHHHHHHHHHHHH
Confidence 49999999999877 45567766533221 2579999999999999999987643 111110 11 34566
Q ss_pred HhCCCch-HHHhccccccccc---cchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccCCCccchhhcc
Q 016716 276 SRNGLSQ-DVCINDLEAPAFQ---VLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 276 ~~~d~~~-~~~~NdLe~~~~~---~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~~~a~~i~~~~ 343 (384)
..+|+.. ..+.|+.++.+.. .+|+++++++.+++.| +|++|||||+ |+|++++++.++++.+.+
T Consensus 234 ~~~d~~~l~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~G----~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l 303 (317)
T 1kkh_A 234 KIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFG----FGAKLTGAGGGGCVIILVNEEKEKELLKEL 303 (317)
T ss_dssp HCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHS----SEEEECSSSSSEEEEEECCGGGHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC----ceeEEeecCCCCEEEEEechhhHHHHHHHH
Confidence 6666543 1223443333322 3899999999999877 4899999999 999999865555555443
No 11
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2e-33 Score=282.21 Aligned_cols=278 Identities=15% Similarity=0.106 Sum_probs=202.9
Q ss_pred chHHHHHHHHhhcc-cCCceeEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCCC-
Q 016716 54 PDERRNKLADEVDR-EAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPG- 131 (384)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~- 131 (384)
..||++++.+...+ |+..+.++++||||+|| .|+|.| ||...+++++|++|+++++++.++. .+.+.+...+
T Consensus 16 ~~~~~~~~~~~f~~~~~~~~~~~~~APgkv~L----~Geh~D-y~~~~~l~~ai~~~~~v~v~~~~~~-~i~i~~~~~~~ 89 (399)
T 1wuu_A 16 VAELLAEARRAFREEFGAEPELAVSAPGRVNL----IGEHTD-YNQGLVLPMALELMTVLVGSPRKDG-LVSLLTTSEGA 89 (399)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEE----ECTTCG-GGTCEEEEEEEEEEEEEEEEEETTC-EEEEEECCSSS
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEeeeeEEE----eccccc-cCCCEEEeEEecccEEEEEEECCCC-eEEEEECCCCC
Confidence 34788888888555 44445689999999999 699999 9998899999999999999986543 2444432211
Q ss_pred -------CCC------------CCChHHHHHHHHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCC
Q 016716 132 -------IPV------------DDSNLIIKALNLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCV 192 (384)
Q Consensus 132 -------lp~------------d~~Nli~ka~~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ 192 (384)
+|. ++.|++.++++.+ +.++. .|++|+++++||.|+|||||||+++|++.|+++++|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~n~v~~a~~~l-~~~~~-~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~ 167 (399)
T 1wuu_A 90 DEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY-PAAPL-PGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDS 167 (399)
T ss_dssp CSCSEEEEECCCSSCCCCCCSSGGGHHHHHHHHHC-SSSCC-CEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccceEEecCccccccccCCCCHHHHHHHHHHHh-cCCCC-CCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 122 1469999999887 32232 69999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccc----------CcceeecCC---eEEEccCCceeeeCCCCCCCCccEEEEcCCCCcchHH------
Q 016716 193 ATEKELQEWSSEIGS----------DIPFFFSHG---AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAE------ 253 (384)
Q Consensus 193 ls~~eL~~la~~ie~----------Dvp~~~~GG---~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~------ 253 (384)
+++++|+++|.++|. |.+++++|| ..+..+.+..+.+++.+. ++++++|++|++..+|.+
T Consensus 168 l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~~~~~~t~~~~y~~r 246 (399)
T 1wuu_A 168 GTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSD-PKLAVLITNSNVRHSLASSEYPVR 246 (399)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCC-SSEEEEEEEEEEEC--CTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCceEEecCCC-CCeEEEEEECCCccccccccHHHH
Confidence 999999999999752 888888888 455667777777665432 379999999999999862
Q ss_pred ------HHhhhccccCCCC------------C----------------HHHHHHHHHhCCCch--HHH---hcccccccc
Q 016716 254 ------VYKHLRLDQTTKV------------D----------------PLTLLEQISRNGLSQ--DVC---INDLEAPAF 294 (384)
Q Consensus 254 ------a~~~l~~~~~~~~------------d----------------~~~ll~al~~~d~~~--~~~---~NdLe~~~~ 294 (384)
+++.+........ + ...++.+|.++|+.. ..+ ++.++....
T Consensus 247 ~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~ 326 (399)
T 1wuu_A 247 RRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYE 326 (399)
T ss_dssp HHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3333321100000 0 123456777787643 222 234543234
Q ss_pred ccchHHHHHHHHHHH-cCCCCCCceeeeccc--cceeEeccCCCccchhhcc
Q 016716 295 QVLPSLKRLKQRIIA-AGRGQYDAVFMSGSG--STIVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 295 ~~~p~l~~l~~~l~~-~Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~~~~ 343 (384)
..+|+++++++.+++ .|+ +|++|||+| ||+|++++++.++++.+.+
T Consensus 327 ~~~p~l~~l~~~a~~~~Ga---~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l 375 (399)
T 1wuu_A 327 VSCPELDQLVEAALAVPGV---YGSRMTGGGFGGCTVTLLEASAAPHAMRHI 375 (399)
T ss_dssp CCCHHHHHHHHHHHTSTTE---EEEEECSSCSEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCc---eEEeeecCCCccEEEEEEccchHHHHHHHH
Confidence 569999999999999 697 899999988 9999999876555555443
No 12
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.2e-32 Score=278.20 Aligned_cols=288 Identities=15% Similarity=0.121 Sum_probs=203.0
Q ss_pred ceeeEeecCchHHHHHHHHhhccc-CCcee-EEEEcceeEEecccccCccCC--CcccccccccccCcccEEEEEeCCCC
Q 016716 45 RKQVEVVYDPDERRNKLADEVDRE-APLSR-LTLFSPCKINAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLSPLK 120 (384)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~aPAKiNL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~~~~ 120 (384)
..++-++..+..|++++.+...+. ...+. ++++||||+|| .|+|.| ||+.|. ++|++|+++++++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~APgkv~L----~Geh~d~~G~~~l~---~aI~l~~~v~v~~~~~~ 90 (419)
T 1pie_A 18 GSHMSIVVENSTVLSALTEKFAEVFGDTKEVEYFFSPGRINL----IGEHTDYNGGYVFP---ASITIGTTGLARLREDK 90 (419)
T ss_dssp -----------CHHHHHHHHHHHHHSCCCSCEEEEEEEEEEE----ECCSCTTTTCEEEE---EEEEEEEEEEEEECSSS
T ss_pred CccccchHHHHHHHHHHHHHHHHHhCCCCceEEEEeeEEEEE----cccceeeCCCEEEE---EEEcccEEEEEEECCCC
Confidence 456667777777999988885444 44455 89999999999 699988 555444 89999999999986542
Q ss_pred CceEEEeeC-----------CCC-C---CCCChHHHHHHHHHHHH-cCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHH
Q 016716 121 SRDRLSTNV-----------PGI-P---VDDSNLIIKALNLYRKK-TESDNFFWIHLDKKVPSGAGLGGGSSNAATALWA 184 (384)
Q Consensus 121 ~~~~l~~~~-----------~~l-p---~d~~Nli~ka~~~~~~~-~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~A 184 (384)
.+.+.... .++ + .++.|++.++++.+++. ++...|++|+++++||.|+|||||||+++|++.|
T Consensus 91 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n~v~~~~~~l~~~g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~a 169 (419)
T 1pie_A 91 -KVKLYSENFPKLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVV 169 (419)
T ss_dssp -EEEEEETTCGGGCCEEEETTCTTSCCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHH
T ss_pred -EEEEEECCCCCcceeEEecccccCCCCcCHHHHHHHHHHHHHHhCCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHH
Confidence 23443321 111 1 23579999998888775 3444799999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHhhcc----------cCcceeecCC---eEEEccCCceeeeCCCCCCCCccEEEEcCCCCcch
Q 016716 185 ANQFNGCVATEKELQEWSSEIG----------SDIPFFFSHG---AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPT 251 (384)
Q Consensus 185 ln~l~g~~ls~~eL~~la~~ie----------~Dvp~~~~GG---~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT 251 (384)
+++++|.++++++|+++|.++| .|++++++|| +++..+.+..+++++.+. ++++++|++|++..+|
T Consensus 170 l~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~l~~~~-~~~~~vl~~~~~~~~t 248 (419)
T 1pie_A 170 LDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVEL-RDYDIVIMNTNKPRAL 248 (419)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCC-TTEEEEEEECCCCCCT
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCceEEeecCC-CCcEEEEEECCCcccc
Confidence 9999999999999999999975 2788888886 556677777777775432 4799999999998887
Q ss_pred H------------HHHhhhccc-------cCC----------CCC----------------HHHHHHHHHhCCCch--HH
Q 016716 252 A------------EVYKHLRLD-------QTT----------KVD----------------PLTLLEQISRNGLSQ--DV 284 (384)
Q Consensus 252 ~------------~a~~~l~~~-------~~~----------~~d----------------~~~ll~al~~~d~~~--~~ 284 (384)
. ++++.++.. ... ..+ ...+..+|.++|+.. ..
T Consensus 249 ~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l 328 (419)
T 1pie_A 249 TESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGEL 328 (419)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4 455554310 000 000 123456787887643 12
Q ss_pred H---hccccccccccchHHHHHHHHHHHc-CCCCCCceeeeccc--cceeEeccCCCccchhhccc
Q 016716 285 C---INDLEAPAFQVLPSLKRLKQRIIAA-GRGQYDAVFMSGSG--STIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 285 ~---~NdLe~~~~~~~p~l~~l~~~l~~~-Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~~~~~ 344 (384)
| ++.++......+|+++++++.+++. |+ +|++|||+| ||+|+|++++.++++.+.++
T Consensus 329 m~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga---~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~ 391 (419)
T 1pie_A 329 LNASHASLKDDYEVTGLELDTLAETAQKQAGV---LGARMTGAGFGGCAIALVAHDNVSAFRKAVG 391 (419)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTE---EEEEECSSCSSSEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCC---ceeeEecCCCCeEEEEEEchhhHHHHHHHHH
Confidence 2 2333221223689999999999997 98 899999987 99999998766666665543
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=7.9e-33 Score=265.05 Aligned_cols=237 Identities=13% Similarity=0.061 Sum_probs=180.1
Q ss_pred eEEEEcceeEEecccccCccCCCccccccccccc-CcccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHHHHHc
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVI-SLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKT 151 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I-~l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~~~~~ 151 (384)
.++++||||||| .|+|.|+ |...+++++| ++|+++++++.++ .+.+.. . +.+|++.++++.+ .
T Consensus 5 ~~~~~aP~ki~L----~Ge~~~~-~g~~~l~~ai~~~~~~v~v~~~~~--~~~i~~--~----~~~~~~~~~~~~~---~ 68 (292)
T 2oi2_A 5 VGVGQAHSKIIL----IGEHAVV-YGYPAISLPLLEVEVTCKVVPAES--PWRLYE--E----DTLSMAVYASLEY---L 68 (292)
T ss_dssp CEEEEEEEEEEE----ECTTGGG-GTCCEEEEEEEEEEEEEEEEECSS--CCCCCC--C----SHHHHHHHHHHHH---H
T ss_pred cEEEEeeeEEEE----EeCCeee-cCCcEEEEEEcCcEEEEEEEECCC--ceEEEe--c----CccchhhhhhHHH---h
Confidence 378899999999 4999884 7778888999 9999999997532 122211 1 1248888876654 2
Q ss_pred CC-CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---cCccee------ecCCeEEEc
Q 016716 152 ES-DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---SDIPFF------FSHGAAYCT 221 (384)
Q Consensus 152 g~-~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---~Dvp~~------~~GG~a~~~ 221 (384)
+. ..|++|+++|+||.|+|||||||+++|++.|+++++|.+++.++|+++|.++| .|+|++ ..||+++.
T Consensus 69 ~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~~~~gg~~~~- 147 (292)
T 2oi2_A 69 NITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRF- 147 (292)
T ss_dssp TCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEE-
T ss_pred cccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCchhHHHHhcCceEEE-
Confidence 55 46899999999999999999999999999999999999999999999999997 688885 35677665
Q ss_pred cCCceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCC-CC--------HHHHHHHHHhCCCch--HHH---hc
Q 016716 222 GRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTK-VD--------PLTLLEQISRNGLSQ--DVC---IN 287 (384)
Q Consensus 222 g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~-~d--------~~~ll~al~~~d~~~--~~~---~N 287 (384)
.+|+.+++++.++| .+ +++++|+..++|+++++.++... .. .+ ...+..+|.++|+.. ..+ +|
T Consensus 148 ~~~~~~~~~~~~~~-~~-~~i~~~~~~~sT~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~ 224 (292)
T 2oi2_A 148 IKNVGFTELEMDLS-AY-LVIADTGVYGHTREAIQVVQNKG-KDALPFLHALGELTQQAEIAISQKDAEGLGQILSQAHL 224 (292)
T ss_dssp ETTTEEEECCCCCS-CE-EEEEECSSCCCHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EcCCCceeecCCCC-CE-EEEEECCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777777765443 44 88999999999999999886531 11 11 113457788887643 222 45
Q ss_pred cccccccccchHHHHHHHHHHHcCCCCCCceeeecccc--ceeEeccC
Q 016716 288 DLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSGS--TIVGIGSP 333 (384)
Q Consensus 288 dLe~~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~--tvfal~~~ 333 (384)
.++. ....+|+++++++.+++.|+ +|++|||||| |+|+++++
T Consensus 225 ~l~~-~~~~~p~l~~l~~~~~~~Ga---~ga~~sGaG~Gg~v~~l~~~ 268 (292)
T 2oi2_A 225 HLKE-IGVSSLEADSLVETALSHGA---LGAKMSGGGLGGCIIALVTN 268 (292)
T ss_dssp HHHH-TTCCCHHHHHHHHHHHTTTC---SEEEEESSSSSSEEEEEESC
T ss_pred HHHh-cCCCcHHHHHHHHHHHhCCC---ceeeeccCCCCcEEEEEecC
Confidence 5554 35678999999999999997 8999999999 99999986
No 14
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.98 E-value=2.3e-32 Score=268.55 Aligned_cols=256 Identities=14% Similarity=0.117 Sum_probs=185.8
Q ss_pred EEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCC----C-C--C-CC-CChHHHHHH
Q 016716 74 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP----G-I--P-VD-DSNLIIKAL 144 (384)
Q Consensus 74 ~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~----~-l--p-~d-~~Nli~ka~ 144 (384)
++++||||||| .|+|.| ||...+++++|++|+++++++.++. .+.+.+... . + | .+ +.|++..++
T Consensus 2 ~~~~aP~ki~L----~Ge~~d-~~~~~~l~~ai~~~~~v~v~~~~~~-~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 75 (350)
T 2cz9_A 2 IKVKSPGRVNL----IGEHTD-YTYGYVMPMAINLYTKIEAEKHGEV-ILYSEHFGEERKFSLNDLRKENSWIDYVKGIF 75 (350)
T ss_dssp EEEEEEEEEEE----ECTTCG-GGTCEEEEEEEEEEEEEEEEEESSE-EEEETTTTEEEEECTTCCCCCSSTHHHHHHHH
T ss_pred eEEEeccEEEE----eecChh-hCCCEEEEEEeeceEEEEEEECCCC-eEEEEECCCCccccccCCCCCCcHHHHHHHHH
Confidence 67899999999 599999 6667789999999999999976532 123321110 1 2 2 22 368887766
Q ss_pred HHHHHHcCCC-CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhccc---CcceeecCCeEEE
Q 016716 145 NLYRKKTESD-NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGS---DIPFFFSHGAAYC 220 (384)
Q Consensus 145 ~~~~~~~g~~-~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~---Dvp~~~~GG~a~~ 220 (384)
+.+.+ .+.. .|++|+++|+||.|+|||||||+++|++.|+++++|.++++++|+++|.++|. ++|+++.|+++..
T Consensus 76 ~~l~~-~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~ 154 (350)
T 2cz9_A 76 WVLKE-SDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVV 154 (350)
T ss_dssp HHHHH-TTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred HHHHh-cCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 66654 4544 69999999999999999999999999999999999999999999999999997 6888876665555
Q ss_pred ccC----------CceeeeCCCCCCCCccEEEEcCCCC--cchHHHHhh-----------h-----ccc------cCCC-
Q 016716 221 TGR----------GEVVQDIPPPIPLDVPMVLIKPREA--CPTAEVYKH-----------L-----RLD------QTTK- 265 (384)
Q Consensus 221 ~g~----------Ge~l~~l~~~~p~~~~ivIv~P~~~--vsT~~a~~~-----------l-----~~~------~~~~- 265 (384)
.|. +..+.+++. |+++++++++|+.. ++|.+ |+. + +.. ..+.
T Consensus 155 ~g~~~~~~~~d~~~~~~~~l~~--~~~~~~vl~~~~~~~~~~t~~-~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~ 231 (350)
T 2cz9_A 155 FGREGNVIFLDTHTLDYEYIPF--PKDVSILVFYTGVRRELASSE-YAERKHIAEESLKILGKGSSKEVREGELSKLPPL 231 (350)
T ss_dssp HCCTTEEEEEETTTCCEEEEEC--CTTEEEEEEECSCC----CHH-HHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHH
T ss_pred hcCCCeEEEEecCCCcEEEEcC--CCCcEEEEEECCCCCccccch-HHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHH
Confidence 443 345566643 35799999999987 77765 321 1 000 0000
Q ss_pred -----CC-------HHHHHHHHHhCCCch--HHH---hccccc-cccccchHHHHHHHHHHHcCCCCCCceeeeccc--c
Q 016716 266 -----VD-------PLTLLEQISRNGLSQ--DVC---INDLEA-PAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSG--S 325 (384)
Q Consensus 266 -----~d-------~~~ll~al~~~d~~~--~~~---~NdLe~-~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~ 325 (384)
.+ ...+..+|.++|+.. ..+ +|.|+. +.. .+|+++++++.+++.|+ +|++||||| |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~-~~p~l~~l~~~~~~~Ga---~ga~lsGaG~G~ 307 (350)
T 2cz9_A 232 HRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEV-SCKELDFFVERALKLGA---YGARLTGAGFGG 307 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHTTC---SEEEECSSCSSS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHcCC---CEEEEecCCCce
Confidence 00 123456788887643 233 567754 444 79999999999999998 899999988 9
Q ss_pred ceeEeccCCCccchhhcc
Q 016716 326 TIVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 326 tvfal~~~~~a~~i~~~~ 343 (384)
|+|++++++.++++.+.+
T Consensus 308 ~v~~l~~~~~~~~~~~~l 325 (350)
T 2cz9_A 308 SAIALVDKEDAETIGEEI 325 (350)
T ss_dssp EEEEEEEGGGHHHHHHHH
T ss_pred EEEEEEchhhHHHHHHHH
Confidence 999999876555555543
No 15
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.97 E-value=4.5e-32 Score=271.24 Aligned_cols=266 Identities=13% Similarity=0.071 Sum_probs=193.4
Q ss_pred ceeEEEEcceeEEecccc-cCccCCCc----ccccccccccC---cccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHH
Q 016716 71 LSRLTLFSPCKINAFLRI-TNKREDGF----HDLASLFHVIS---LGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIK 142 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I-~g~~~dGy----h~L~sl~~~I~---l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~k 142 (384)
|+..+++|+||+||.|.. .|||.||| |...|+.++++ +|++++|+..++...+.+.++....+.+++|++.+
T Consensus 1 ~~~~~~~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~v~~ 80 (380)
T 2hke_A 1 MSDQCVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQS 80 (380)
T ss_dssp ---CEEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTEEECGGGCHHHHH
T ss_pred CCCccEEEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEECCcccCchhHHHHHH
Confidence 455678899999999995 99999999 99999999999 99999999754211245655443333336799999
Q ss_pred HHHHHHHHcCC---CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEE
Q 016716 143 ALNLYRKKTES---DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAY 219 (384)
Q Consensus 143 a~~~~~~~~g~---~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~ 219 (384)
+++.+++.++. ..+++|+++++||.++|||||||+++|++.|+|+++|++ ++|+++|.+++++++++++||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gsva~s~~GG~v~ 157 (380)
T 2hke_A 81 MLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSACRSAFGGFVI 157 (380)
T ss_dssp HHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGGGGGGSSSEEE
T ss_pred HHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCcceeeehhCCeEE
Confidence 99999988887 679999999999999999999999999999999999987 899999999998888888999977
Q ss_pred E-ccC---C--ceeeeCCC--CCCCCccEEEEcCC---CCc-chHHHHhhhccccC--------CCCCHHHHHHHHHhCC
Q 016716 220 C-TGR---G--EVVQDIPP--PIPLDVPMVLIKPR---EAC-PTAEVYKHLRLDQT--------TKVDPLTLLEQISRNG 279 (384)
Q Consensus 220 ~-~g~---G--e~l~~l~~--~~p~~~~ivIv~P~---~~v-sT~~a~~~l~~~~~--------~~~d~~~ll~al~~~d 279 (384)
. .|. + ....+++. .+| +++++++.|+ ..+ +|..+++.++.... .......++.+|.++|
T Consensus 158 ~~~g~~~~~~~~~~~~l~~~~~~p-~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~Al~~~D 236 (380)
T 2hke_A 158 WNKGEKPDGSDCVATQFVDETHWP-EIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARD 236 (380)
T ss_dssp EECCSCTTSTTCEEEEEECTTSCT-TEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred EecCCCCCCCcceEEeccCcccCC-cceEEEEEecCCCCCCCCHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4 343 1 12334422 233 5666666543 233 56666555443210 0111234678898998
Q ss_pred Cch--HHH-h--cccc-------ccccccchHHHHHHHHHHHc----C-CCCCCceeeeccccceeEeccCCCccchhhc
Q 016716 280 LSQ--DVC-I--NDLE-------APAFQVLPSLKRLKQRIIAA----G-RGQYDAVFMSGSGSTIVGIGSPDPPQFIYDD 342 (384)
Q Consensus 280 ~~~--~~~-~--NdLe-------~~~~~~~p~l~~l~~~l~~~----G-a~~~~ga~mSGSG~tvfal~~~~~a~~i~~~ 342 (384)
+.. ..+ . |.|+ |++....|...++++.+.+. | + .++.|||||||||+++++++++++.+.
T Consensus 237 ~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~---~~a~~SGaGPtv~~l~~~~~~~~v~~~ 313 (380)
T 2hke_A 237 FATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRT---ALAYTFDAGANCFLFVLKEDLPEAVAM 313 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSC---CEEEECCSSSCEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCc---ceEEEECCCCcEEEEECHHHHHHHHHH
Confidence 643 223 2 4553 66666788888888876554 7 4 678999999999999987655555554
Q ss_pred c
Q 016716 343 N 343 (384)
Q Consensus 343 ~ 343 (384)
+
T Consensus 314 l 314 (380)
T 2hke_A 314 L 314 (380)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.97 E-value=7.5e-32 Score=265.14 Aligned_cols=265 Identities=14% Similarity=0.102 Sum_probs=193.7
Q ss_pred eeEEEEcceeEEecccccCccCC-----CcccccccccccC-cccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHH
Q 016716 72 SRLTLFSPCKINAFLRITNKRED-----GFHDLASLFHVIS-LGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALN 145 (384)
Q Consensus 72 ~~~~v~aPAKiNL~L~I~g~~~d-----Gyh~L~sl~~~I~-l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~ 145 (384)
+..+.+||+.|||-- --|++.+ |++.|+ .+++ +|++++++.+++...+.+..+...+|.++.|+++++++
T Consensus 8 ~~~~~~ap~nialik-y~gk~~~~~~lP~~dslg---lal~~~~~~~~v~~~~~~~~~~~~i~g~~~~~~~~n~v~~~~~ 83 (332)
T 3qt5_A 8 KSGKARAHTNIALIK-YWGKADETYIIPMNNSLS---VTLDRFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYMN 83 (332)
T ss_dssp EEEEEEEEEEEEEEC-CCCEEETTTTEESSCEEE---EEEEEEEEEEEEEEETTCSSCEEEETTEECCHHHHHHHHHHHH
T ss_pred EEEEEEecCcEEEEe-eeeeccCCccccCCCceE---EEecCCCCeeEEEEcCCCCccEEEECCccCCcchHHHHHHHHH
Confidence 347889999999911 1244333 555555 6776 79999998765321255666655566667899999999
Q ss_pred HHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEE-ccCC
Q 016716 146 LYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYC-TGRG 224 (384)
Q Consensus 146 ~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~-~g~G 224 (384)
.++++++...+++|+++++||.++|||||||+++|++.|++++++.+++.+||.++|.++|++++.+++||+++. .|.+
T Consensus 84 ~~~~~~~~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~~~~~~~GG~~~~~~g~~ 163 (332)
T 3qt5_A 84 IVRDLAGNRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEKGHD 163 (332)
T ss_dssp HHHHHHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGGGGGGGSCSEEEEECCSS
T ss_pred HHHHhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCchhhhcCCeEEEecCCC
Confidence 999999988899999999999999999999999999999999999999999999999999988887778999874 5544
Q ss_pred ce---eeeCCC-CCCCCccEEEEcCCCCcc---hHHHHhhhccccCCCC--------CHHHHHHHHHhCCCch--HHHh-
Q 016716 225 EV---VQDIPP-PIPLDVPMVLIKPREACP---TAEVYKHLRLDQTTKV--------DPLTLLEQISRNGLSQ--DVCI- 286 (384)
Q Consensus 225 e~---l~~l~~-~~p~~~~ivIv~P~~~vs---T~~a~~~l~~~~~~~~--------d~~~ll~al~~~d~~~--~~~~- 286 (384)
+. ..+++. ..++++++++++|+...+ |.++++.......... ....++.+|.++|+.. ..+.
T Consensus 164 ~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~ 243 (332)
T 3qt5_A 164 DLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDHVDEDLNEAKEAVKNQDFQRLGEVIEA 243 (332)
T ss_dssp TTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 244431 122479999999998654 3344443311111111 1234678899998754 3444
Q ss_pred c--cc-cccccc------cchHHHHHHHHHH---HcCCCCCCceeeeccccceeEeccCCCccchhhcc
Q 016716 287 N--DL-EAPAFQ------VLPSLKRLKQRII---AAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 287 N--dL-e~~~~~------~~p~l~~l~~~l~---~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~~~~ 343 (384)
| .| ++++.. ..|++.++++.+. +.|+ .++.|||||||||+++++++++++.+.+
T Consensus 244 d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga---~~a~~SGaGPtv~~l~~~~~a~~v~~~l 309 (332)
T 3qt5_A 244 NGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANL---PCYFTMDAGPNVKVLVEKKNKQAVMEQF 309 (332)
T ss_dssp HHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTC---CEEEECCSSSCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCC---cEEEEeCCCCcEEEEECHHHHHHHHHHH
Confidence 4 45 444443 6799999888874 7888 8999999999999999866566655543
No 17
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.97 E-value=9.7e-32 Score=261.75 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=188.6
Q ss_pred CceeEEEEcceeEEeccc-ccCccCCCc--cccccccccc-CcccEEEEEe-CCCCCceEEEeeCCCCCCCCChHHHHHH
Q 016716 70 PLSRLTLFSPCKINAFLR-ITNKREDGF--HDLASLFHVI-SLGDTIKFSL-SPLKSRDRLSTNVPGIPVDDSNLIIKAL 144 (384)
Q Consensus 70 ~~~~~~v~aPAKiNL~L~-I~g~~~dGy--h~L~sl~~~I-~l~d~v~i~~-~~~~~~~~l~~~~~~lp~d~~Nli~ka~ 144 (384)
.|+.-+++++||+|+.|. +.|++.+|| |...++..++ ++|++++++. .+....+.+..+....+.++.|++.+++
T Consensus 3 ~~~~~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~n~v~~~~ 82 (317)
T 2gs8_A 3 AMDPNVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLPDTATSDQFYINGILQNDEEHTKISAII 82 (317)
T ss_dssp CSSCCEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECCTTCCSCEEEETTEECCHHHHHHHHHHH
T ss_pred cccCCcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccceEEEEEEcCCCCeEEEEECCCccccchHHHHHHHH
Confidence 355455667777777777 889999999 4778888999 6999999997 4321124555443222334578999999
Q ss_pred HHHHHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceeecCCeEEEccCC
Q 016716 145 NLYRKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFFSHGAAYCTGRG 224 (384)
Q Consensus 145 ~~~~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~~GG~a~~~g~G 224 (384)
+.++++.+ .+++|+++++||.|+|||||||+++|++.|+|+++|.+++.+||+++|.+++++++.+++||+++..+.|
T Consensus 83 ~~~~~~~~--~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~~~~GG~~~~~~~~ 160 (317)
T 2gs8_A 83 DQFRQPGQ--AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDKDS 160 (317)
T ss_dssp TTTCCTTC--CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGGGGSCSEEEECTTT
T ss_pred HHHHHhcC--CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHhhhcCChheEeeCC
Confidence 98887766 7899999999999999999999999999999999999999999999999998887777889998876655
Q ss_pred ceeeeCCCCCCCCccEEEEc-CC--CCcchHHHHh-hhccccCCCC--------CHHHHHHHHHhCCCch--HHHh---c
Q 016716 225 EVVQDIPPPIPLDVPMVLIK-PR--EACPTAEVYK-HLRLDQTTKV--------DPLTLLEQISRNGLSQ--DVCI---N 287 (384)
Q Consensus 225 e~l~~l~~~~p~~~~ivIv~-P~--~~vsT~~a~~-~l~~~~~~~~--------d~~~ll~al~~~d~~~--~~~~---N 287 (384)
..+...+. |.++++++++ |. ..++|.+.++ .++.. .... ....++.+|.++|+.. ..+. |
T Consensus 161 ~~~~~~~~--~~~~~~~v~i~~~~~~~~~tt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~ 237 (317)
T 2gs8_A 161 GAIYKVET--DLKMAMIMLVLNAAKKPISSREGMKLCRDTS-TTFDQWVEQSAIDYQHMLTYLKTNNFEKVGQLTEANAL 237 (317)
T ss_dssp CCEEECCC--CCCEEEEEEECCCSSCCSCHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CceeEEEc--cccccEEEEEEECCCcCcccHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53333332 3367765554 32 2455555444 43321 1111 1124567888888653 2232 4
Q ss_pred ccc-------ccccccchHHHHHHH---HHHHcCCCCCCceeeeccccceeEeccCCCccchhhccc
Q 016716 288 DLE-------APAFQVLPSLKRLKQ---RIIAAGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 288 dLe-------~~~~~~~p~l~~l~~---~l~~~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~~~~~ 344 (384)
.|+ |++..+.|.+.++++ .+++.|+ .++.|||||||+|+|++++.++++.+.++
T Consensus 238 ~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~---~~~~~SGaGptv~~l~~~~~~~~v~~~l~ 301 (317)
T 2gs8_A 238 AMHATTKTANPPFSYLTKESYQAMEAVKELRQEGF---ACYFTMDAGPNVKVLCLEKDLAQLAERLG 301 (317)
T ss_dssp HHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTC---CEEEECCSSSCEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCC---cEEEEecCCCeEEEEEcHHHHHHHHHHHh
Confidence 553 444556777777775 4445786 78999999999999998665555554433
No 18
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.97 E-value=3.5e-30 Score=253.53 Aligned_cols=253 Identities=15% Similarity=0.147 Sum_probs=192.8
Q ss_pred eEEEEcceeEEecccccCccC---CCcccccccccccCcccEEEEEeCCCCCceEEEeeCCC-----CCCCCChHHHHHH
Q 016716 73 RLTLFSPCKINAFLRITNKRE---DGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPG-----IPVDDSNLIIKAL 144 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~---dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~-----lp~d~~Nli~ka~ 144 (384)
+++++||||+|| +|+|. +||+.|. ++|++|+++++++.+. +++.+...+ .|.++.|++.+++
T Consensus 3 mi~~~aPgkv~L----~GeH~v~y~G~~~l~---~Ai~~~~~v~v~~~~~---~~i~s~~~~~~~~~~~~~~~~~v~~~i 72 (337)
T 2pg9_A 3 MIAVKTCGKLYW----AGEYAILEPGQLALI---KDIPIYMRAEIAFSDS---YRIYSDMFDFAVDLRPNPDYSLIQETI 72 (337)
T ss_dssp CEEEEEEEEEEE----ECTTGGGSTTCEEEE---EEEEEEEEEEEEECSS---CEEEETTSSSCBCSSCCTTTHHHHHHH
T ss_pred eEEEeeCceEEE----eccceEecCCCEEEE---EEccccEEEEEEeCCc---EEEecCCCCceeeecCCCCcHHHHHHH
Confidence 488999999999 79998 4888777 8999999999998652 455543211 1333458999999
Q ss_pred HHHHHHc---CC-CCcEEEEEeecCCCC---CCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------cC
Q 016716 145 NLYRKKT---ES-DNFFWIHLDKKVPSG---AGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---------SD 208 (384)
Q Consensus 145 ~~~~~~~---g~-~~g~~I~I~k~IP~g---aGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---------~D 208 (384)
+.+++++ |. ..|++|+|+++||.| +|||||||+++|++.|++++++.+++.++|+++|.++| .|
T Consensus 73 ~~~~~~~~~~g~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D 152 (337)
T 2pg9_A 73 ALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGD 152 (337)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 9987764 33 369999999999999 99999999999999999999999999999999999985 47
Q ss_pred cceeecCCeEEEc--cC--------------------CceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCC
Q 016716 209 IPFFFSHGAAYCT--GR--------------------GEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKV 266 (384)
Q Consensus 209 vp~~~~GG~a~~~--g~--------------------Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~ 266 (384)
++++.+||+++.. ++ |..+.+++. |.++++++++|+.+.+|+++++.++... . .
T Consensus 153 ~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~--~~~~~lvl~~~~~~~~T~~~~~~~~~~~-~-~ 228 (337)
T 2pg9_A 153 LACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKP--TLECDFLVGWTKEVAVSSHMVQQIKQNI-N-Q 228 (337)
T ss_dssp HHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCC--CSCCEEEEEECCCCCCHHHHHHHHGGGC-C-H
T ss_pred HHHHHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecC--CCCceEEEEECCCccchHHHHHHHHHHH-H-H
Confidence 8888899988765 22 334566653 4578999999999999999999987642 1 1
Q ss_pred C--------HHHHHHHHHhCCCch--HHHhc---cccccc-cccchHHHHHHHHHHHcCCCCCCceeeeccc--cceeEe
Q 016716 267 D--------PLTLLEQISRNGLSQ--DVCIN---DLEAPA-FQVLPSLKRLKQRIIAAGRGQYDAVFMSGSG--STIVGI 330 (384)
Q Consensus 267 d--------~~~ll~al~~~d~~~--~~~~N---dLe~~~-~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal 330 (384)
+ ...++.+|.++|+.. ..+.+ .++... ...+|+++++++.+++.|+ + ++|||+| +|+|++
T Consensus 229 ~~~~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga---~-ak~sGaGgGg~vial 304 (337)
T 2pg9_A 229 NFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA---V-AKSSGAGGGDCGIAL 304 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE---E-EEECTTCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCC---E-EEEeCCCCccEEEEE
Confidence 1 123567888888653 22322 232221 2468999999999998887 7 9999998 999999
Q ss_pred ccCC-Cccchhhcc
Q 016716 331 GSPD-PPQFIYDDN 343 (384)
Q Consensus 331 ~~~~-~a~~i~~~~ 343 (384)
++++ .++++.+.+
T Consensus 305 ~~~~~~~~~~~~~l 318 (337)
T 2pg9_A 305 SFDAQSTKTLKNRW 318 (337)
T ss_dssp ECSHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHH
Confidence 9863 344444443
No 19
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-30 Score=258.76 Aligned_cols=263 Identities=15% Similarity=0.083 Sum_probs=174.5
Q ss_pred eEEEEcceeEEecccccCccCCCc-----ccccccccccCcccEEEEEeCCCCCceEEEeeCC----------CCC-CCC
Q 016716 73 RLTLFSPCKINAFLRITNKREDGF-----HDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP----------GIP-VDD 136 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGy-----h~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~----------~lp-~d~ 136 (384)
+++++||+|||| .|+|.|.+ +.-.+++++|++|+++++++.++. .+++.+... .++ .++
T Consensus 3 mi~~~APgRvnL----~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~-~i~i~s~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 3k85_A 3 LVRSKAPLRLGL----AGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSG-RIEINAYDAQCCKSYLSMSQLEIDGE 77 (357)
T ss_dssp CEEEEEEEEEEE----ECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSS-EEEEEETTTTEEEEEECCSSCCCCSS
T ss_pred EEEEECceEEEE----ecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCC-eEEEEECCCCceEEEeccccccccch
Confidence 588999999999 68887642 333467799999999999987653 345543211 111 247
Q ss_pred ChHHHHHHHHHHHHcCC-CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------
Q 016716 137 SNLIIKALNLYRKKTES-DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG--------- 206 (384)
Q Consensus 137 ~Nli~ka~~~~~~~~g~-~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie--------- 206 (384)
.|++.++++.+.+..+. ..|++|+++++||.|+|||||||+++|++.|++++++.+++.++|+++|.++|
T Consensus 78 ~~~v~~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G 157 (357)
T 3k85_A 78 ASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGG 157 (357)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 89999999999887664 57999999999999999999999999999999999999999999999999987
Q ss_pred -cCcceeecCCeEEEcc---CCceeeeCCCCCCC------CccEEEEcCCCCcchHHHHhhhccccCCC-CC---H----
Q 016716 207 -SDIPFFFSHGAAYCTG---RGEVVQDIPPPIPL------DVPMVLIKPREACPTAEVYKHLRLDQTTK-VD---P---- 268 (384)
Q Consensus 207 -~Dvp~~~~GG~a~~~g---~Ge~l~~l~~~~p~------~~~ivIv~P~~~vsT~~a~~~l~~~~~~~-~d---~---- 268 (384)
.|.+++.+||+..... .+..+.+++. |+ ++.++|++++...+|.++++......... .+ .
T Consensus 158 ~~D~~a~~~Gg~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~lvi~~t~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~i 235 (357)
T 3k85_A 158 KQDQYAAAFGGFNYMEFLQNDLVIVNPLKM--KRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMHKI 235 (357)
T ss_dssp SHHHHHHHHCSEEEEEEETTTEEEEEEECC--CHHHHHHHHHTEEEECC---------------------CCTTHHHHHH
T ss_pred HHHHHHHHhCCceEEEEeCCCceeEEEEec--ChhhhhhcCceEEEEECCCcccHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 3766667889876532 3333555553 22 25799999998888887776542211000 00 1
Q ss_pred ----HHHHHHHHhCCCch--HHHhccc-cccc--cc-cchHHHHHHHHHHHcCCCCCCceeeeccccc--eeEeccCCCc
Q 016716 269 ----LTLLEQISRNGLSQ--DVCINDL-EAPA--FQ-VLPSLKRLKQRIIAAGRGQYDAVFMSGSGST--IVGIGSPDPP 336 (384)
Q Consensus 269 ----~~ll~al~~~d~~~--~~~~NdL-e~~~--~~-~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG~t--vfal~~~~~a 336 (384)
..+..+|.++|+.. ..|.+.. +..+ .. .+|+++++++.+++.|+ +|++|||+|++ ++++++++.+
T Consensus 236 ~~~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga---~GaklsGaG~gG~vial~~~~~~ 312 (357)
T 3k85_A 236 KQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGA---MAGKVSGAGGGGFIMFVVEPTRK 312 (357)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCC---SEEEECCCC---CEEEECCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCC---eEeEecccCCCCEEEEEecHHHH
Confidence 23566787787654 3444333 2222 12 36999999999988898 89999999977 9999987666
Q ss_pred cchhhcccc
Q 016716 337 QFIYDDNEY 345 (384)
Q Consensus 337 ~~i~~~~~~ 345 (384)
+++.++++.
T Consensus 313 ~~~~~~l~~ 321 (357)
T 3k85_A 313 EEVVRALNN 321 (357)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 666666553
No 20
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.96 E-value=2.2e-28 Score=251.32 Aligned_cols=277 Identities=16% Similarity=0.116 Sum_probs=196.8
Q ss_pred chHHHHHHHHhhcc-cCCceeEEEEcceeEEecccccCccCC--CcccccccccccCcccEEEEEeCCCCCceEEEeeC-
Q 016716 54 PDERRNKLADEVDR-EAPLSRLTLFSPCKINAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNV- 129 (384)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~v~aPAKiNL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~- 129 (384)
..+|+++|.+...+ |+..+.+.++||||+|| .|+|.| ||+.|. ++|++|+++++++.++. .+.+....
T Consensus 35 ~~~r~~~~~~~f~~~fg~~~~~~~~APgrv~L----~Geh~D~~g~~vl~---~AI~~~~~v~v~~~~~~-~i~i~~~~~ 106 (478)
T 2a2c_A 35 EHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNI----IGEHIDYCGYSVLP---MAVEQDVLIAVEPVKTY-ALQLANTNP 106 (478)
T ss_dssp GCHHHHHHHHHHHHHHSSCCSEEEEEEEEEEE----ECTTCGGGTCCBEE---EEEEEEEEEEEEECSSS-CEEEEESST
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeceEEEE----eccceeeCCCeEEE---EEecccEEEEEEECCCC-eEEEEECCC
Confidence 33599999888444 44456699999999999 699988 665555 89999999999986543 24443321
Q ss_pred ---------CCCCC-----CCChHHHHHHHHHHHHcCC--CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCC
Q 016716 130 ---------PGIPV-----DDSNLIIKALNLYRKKTES--DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVA 193 (384)
Q Consensus 130 ---------~~lp~-----d~~Nli~ka~~~~~~~~g~--~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~l 193 (384)
.+++. ++.|++.++++.+.+.++. ..|++|.|+++||.|+|||||||+++|++.|+++++|.++
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~l 186 (478)
T 2a2c_A 107 LYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNL 186 (478)
T ss_dssp TSCCEEECCCCC--CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcceeccchhcccCCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Confidence 12221 1239999999998888876 5799999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccc---------CcceeecC---CeEEEccCCceeeeCCCCCCCCccEEEEcCCCCcchH---------
Q 016716 194 TEKELQEWSSEIGS---------DIPFFFSH---GAAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTA--------- 252 (384)
Q Consensus 194 s~~eL~~la~~ie~---------Dvp~~~~G---G~a~~~g~Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~--------- 252 (384)
++++|+++|.++|. |..++..| |+.+....+..+.+++ +|+++.++|++|+...+|.
T Consensus 187 s~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~~~~~--~~~~~~~vi~~s~~~~~t~~t~~yn~r~ 264 (478)
T 2a2c_A 187 SKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVK--LPSGAVFVIANSCVEMNKAATSHFNIRV 264 (478)
T ss_dssp CHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEEC--CCTTEEEEEEECCCCCCGGGSSHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCCCceEEec--CCCCcEEEEEeCCCcccccccchhHHHH
Confidence 99999999999983 44344444 6655555555556665 3457999999999988763
Q ss_pred ----HHHhhhcccc------------------------------------CCC-------------------------C-
Q 016716 253 ----EVYKHLRLDQ------------------------------------TTK-------------------------V- 266 (384)
Q Consensus 253 ----~a~~~l~~~~------------------------------------~~~-------------------------~- 266 (384)
.+.+.++... +.. .
T Consensus 265 ~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~ 344 (478)
T 2a2c_A 265 MECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVL 344 (478)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCC
T ss_pred HHHHHHHHHHHhhhcccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccch
Confidence 3333332110 000 0
Q ss_pred --C--------------HHHHHHHHHh---CCCch--HHHhccc-cccc---cccchHHHHHHHHHHHcCCCCCCceeee
Q 016716 267 --D--------------PLTLLEQISR---NGLSQ--DVCINDL-EAPA---FQVLPSLKRLKQRIIAAGRGQYDAVFMS 321 (384)
Q Consensus 267 --d--------------~~~ll~al~~---~d~~~--~~~~NdL-e~~~---~~~~p~l~~l~~~l~~~Ga~~~~ga~mS 321 (384)
. ...++.+|.+ +|+.. ..| |.. +..+ ...+|+++++++.++++|+ +|++||
T Consensus 345 ~~~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm-~~sh~slr~l~~vs~peld~l~~~a~~~Ga---~Garlt 420 (478)
T 2a2c_A 345 IFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELM-NQSHMSCRDMYECSCPELDQLVDICRKFGA---QGSRLT 420 (478)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHH-HHHHHHHHHTSCCCCHHHHHHHHHHHHTTC---SEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHHHHHHhcccCCCHHHHHHHHHHHhCCC---cEEEec
Confidence 0 0123345665 65432 222 222 2222 2459999999999999998 899999
Q ss_pred ccc--cceeEeccCCCccchhhccc
Q 016716 322 GSG--STIVGIGSPDPPQFIYDDNE 344 (384)
Q Consensus 322 GSG--~tvfal~~~~~a~~i~~~~~ 344 (384)
|+| +|++++++++.++.+.+.++
T Consensus 421 GAG~GG~viaLv~~~~~~~~~~~l~ 445 (478)
T 2a2c_A 421 GAGWGGCTVSMVPADKLPSFLANVH 445 (478)
T ss_dssp TTCSSSEEEEEEEGGGHHHHHHHHH
T ss_pred cCCCccEEEEEEcHHHHHHHHHHHH
Confidence 986 99999998766666666654
No 21
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.96 E-value=1e-28 Score=249.80 Aligned_cols=267 Identities=14% Similarity=0.138 Sum_probs=183.8
Q ss_pred ceeEEEEcceeEEecccccCccCCCc--ccccccccccC---cccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHH
Q 016716 71 LSRLTLFSPCKINAFLRITNKREDGF--HDLASLFHVIS---LGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALN 145 (384)
Q Consensus 71 ~~~~~v~aPAKiNL~L~I~g~~~dGy--h~L~sl~~~I~---l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~ 145 (384)
|.+++++||+.|+| +...|++.+|| +...++..+++ +|++++|+..++...+.+.++....+. ..|++.++++
T Consensus 23 ~~~~~~~Ap~nial-ik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~~~~~i~i~G~~~~~-~~~~v~~~~~ 100 (416)
T 1fi4_A 23 VYTASVTAPVNIAT-LKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSI-DNERTQNCLR 100 (416)
T ss_dssp CEEEEEEECCEEEE-ECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSS-SSSSHHHHHH
T ss_pred ceEEEEEecceEEE-EecccccCCceecccccceEEEEEcCCCcceEEEEEcCCCCccEEEECCccccc-cchHHHHHHH
Confidence 33456666665543 12478888888 77788889998 999999997543112334333333333 3789999999
Q ss_pred HHHHHcCC------------CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceee
Q 016716 146 LYRKKTES------------DNFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFF 213 (384)
Q Consensus 146 ~~~~~~g~------------~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~ 213 (384)
.+++.++. ..+++|+++++||.++|||||||+++|++.|+|+++|++++.+||+++|.+++++++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~sl 180 (416)
T 1fi4_A 101 DLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSL 180 (416)
T ss_dssp HHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchheEe
Confidence 99988765 568999999999999999999999999999999999999999999999999988888888
Q ss_pred cCCeEEE-ccCC-----ceeeeCCC--CCCCCccEEEEcCCC---Ccc-hHHHHhhhcccc-----CC---CCCHHHHHH
Q 016716 214 SHGAAYC-TGRG-----EVVQDIPP--PIPLDVPMVLIKPRE---ACP-TAEVYKHLRLDQ-----TT---KVDPLTLLE 273 (384)
Q Consensus 214 ~GG~a~~-~g~G-----e~l~~l~~--~~p~~~~ivIv~P~~---~vs-T~~a~~~l~~~~-----~~---~~d~~~ll~ 273 (384)
+||+++. .|.+ ....+++. .+| +++++++.|+. .++ |..+++.++... .. ......++.
T Consensus 181 ~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p-~l~~vvlv~~~~~~~~sst~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 259 (416)
T 1fi4_A 181 FGGYVAWEMGKAEDGHDSMAVQIADSSDWP-QMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRK 259 (416)
T ss_dssp SSSEEEEECCSCTTCTTCEEEEEECGGGST-TEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHH
T ss_pred eCCcEEEecCCcCCCCCceeEEecCccCCc-ccEEEEEEECCCCCCcCCHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHH
Confidence 9999775 3432 12233321 123 67755555433 344 444444333210 00 111235678
Q ss_pred HHHhCCCch--HHH---hcccc-------ccccccchHHHHHHHHHHH----cC-CCCCCceeeeccccceeEeccCCCc
Q 016716 274 QISRNGLSQ--DVC---INDLE-------APAFQVLPSLKRLKQRIIA----AG-RGQYDAVFMSGSGSTIVGIGSPDPP 336 (384)
Q Consensus 274 al~~~d~~~--~~~---~NdLe-------~~~~~~~p~l~~l~~~l~~----~G-a~~~~ga~mSGSG~tvfal~~~~~a 336 (384)
+|.++|+.. ..+ .|.|+ |++..+.|...++++.+.+ .| + .++.|||||||||+|++++.+
T Consensus 260 AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~---~~a~~SGaGPtv~al~~~~~~ 336 (416)
T 1fi4_A 260 AIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGET---IVAYTFDAGPNAVLYYLAENE 336 (416)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSC---CEEEEECSSSCEEEEEEGGGH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCc---eEEEEecCCCcEEEEECHHHH
Confidence 899998753 223 24552 5566667888888876644 37 4 678899999999999987655
Q ss_pred cchhhcc
Q 016716 337 QFIYDDN 343 (384)
Q Consensus 337 ~~i~~~~ 343 (384)
+++.+.+
T Consensus 337 ~~v~~~l 343 (416)
T 1fi4_A 337 SKLFAFI 343 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 22
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.94 E-value=5.9e-27 Score=234.66 Aligned_cols=253 Identities=16% Similarity=0.118 Sum_probs=172.6
Q ss_pred eEEEEcceeEEecccccCccCCCcccccccccccCcccEEEEEeCCCCCceEEEeeCC---------CCC----------
Q 016716 73 RLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP---------GIP---------- 133 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~---------~lp---------- 133 (384)
.++++||||+|| +|+|.| |+.-.++.++|++|+++++++.++. .+++..... +++
T Consensus 5 ~~~~~APgrv~L----~Geh~d-~~g~~~l~~ai~~~~~v~v~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (395)
T 1kvk_A 5 VLLVSAPGKVIL----HGEHAV-VHGKVALAVALNLRTFLVLRPQSNG-KVSLNLPNVGIKQVWDVATLQLLDTGFLEQG 78 (395)
T ss_dssp CEEEEEEEEEEE----ECTTGG-GGTCCEEEEEEEEEEEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHTSCC------
T ss_pred cEEEEeCeEEEE----ecCCee-eECCEeeeeEeeccEEEEEEECCCC-eEEEEcCCCCceEEEEhHhhhhhhccccccc
Confidence 478999999999 699998 4445556699999999999987543 233322110 000
Q ss_pred -------------------CCCChH-----HHHHHHHHHHHcCC---CCcEEEEEeecCCCCCCCCchHHHHHHHHHHHH
Q 016716 134 -------------------VDDSNL-----IIKALNLYRKKTES---DNFFWIHLDKKVPSGAGLGGGSSNAATALWAAN 186 (384)
Q Consensus 134 -------------------~d~~Nl-----i~ka~~~~~~~~g~---~~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln 186 (384)
.++.|+ +..++..+.+..+. ..|++|+++++||.|+|||||||+++|++.|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~ 158 (395)
T 1kvk_A 79 DVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALL 158 (395)
T ss_dssp ----------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHHH
Confidence 023444 33344445444454 579999999999999999999999999999999
Q ss_pred HhhCC-----CCC-------HHH---HHHHHhhcc---------cCcceeecCCeEEEccCCceeeeCCCCCCCCccEEE
Q 016716 187 QFNGC-----VAT-------EKE---LQEWSSEIG---------SDIPFFFSHGAAYCTGRGEVVQDIPPPIPLDVPMVL 242 (384)
Q Consensus 187 ~l~g~-----~ls-------~~e---L~~la~~ie---------~Dvp~~~~GG~a~~~g~Ge~l~~l~~~~p~~~~ivI 242 (384)
++++. +++ +++ |.++|.++| .|.+++++||+++.. .| .+++++. |+++++++
T Consensus 159 ~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~-~~-~~~~l~~--~~~~~~vl 234 (395)
T 1kvk_A 159 TACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQ-QG-KMSSLKR--LPALQILL 234 (395)
T ss_dssp HHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEES-SS-CEEECSC--CCCEEEEE
T ss_pred HHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEc-CC-CceeccC--CCCcEEEE
Confidence 99999 888 854 544465554 378888889998863 34 5677753 34799999
Q ss_pred EcCCCCcchHHHHhhhccccCCCCC--------H----HHHHHHHHh-------CCCch--HHH---hccccccccccch
Q 016716 243 IKPREACPTAEVYKHLRLDQTTKVD--------P----LTLLEQISR-------NGLSQ--DVC---INDLEAPAFQVLP 298 (384)
Q Consensus 243 v~P~~~vsT~~a~~~l~~~~~~~~d--------~----~~ll~al~~-------~d~~~--~~~---~NdLe~~~~~~~p 298 (384)
++|+...+|+++++.++.......+ . .+...++.. +|+.. ..+ ++.|+.+ ...+|
T Consensus 235 ~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~~-~~~~p 313 (395)
T 1kvk_A 235 TNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL-GVGHA 313 (395)
T ss_dssp EECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH-TCCCH
T ss_pred EECCCCCchHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHc-CCCCH
Confidence 9999999999987665431100000 0 011122221 23221 122 3455433 34689
Q ss_pred HHHHHHHHHHHcCCCCCCceeeeccc--cceeEeccCCCccchh
Q 016716 299 SLKRLKQRIIAAGRGQYDAVFMSGSG--STIVGIGSPDPPQFIY 340 (384)
Q Consensus 299 ~l~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal~~~~~a~~i~ 340 (384)
+++++++.+++.|+ |++|||+| +|+|++++++..+.+.
T Consensus 314 ~l~~l~~~a~~~Ga----ga~~sGaG~Gg~v~~l~~~~~~~~~~ 353 (395)
T 1kvk_A 314 SLDQLCQVTAAHGL----HSKLTGAGGGGCGITLLKPGLERAKV 353 (395)
T ss_dssp HHHHHHHHHHHTTC----EEEECSSCSSSEEEEEECTTCCHHHH
T ss_pred HHHHHHHHHHHcCC----ceeeccCCCCCEEEEEecCCCCHHHH
Confidence 99999999999874 89999988 9999999875444433
No 23
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.94 E-value=1.1e-26 Score=231.15 Aligned_cols=253 Identities=11% Similarity=0.035 Sum_probs=185.5
Q ss_pred eEEEEcceeEEecccccCccCC---CcccccccccccCcccEEEEEeCCCCCceEEEeeCC----C------CC--CCCC
Q 016716 73 RLTLFSPCKINAFLRITNKRED---GFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVP----G------IP--VDDS 137 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~d---Gyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~----~------lp--~d~~ 137 (384)
+++++||||+|| +|+|.| ||+.|. ++|+++.++++++.++. .+.+... . ++ .++.
T Consensus 6 ~i~~~APGrv~L----~GEh~~~~~g~~~l~---~Ai~~~~~v~v~~~~~~---~i~s~~~~~~~~~~~~~~~~~~~~~~ 75 (365)
T 3k17_A 6 KLQVKIPGKLYV----AGEYAVVESGHTAIL---TAVNRYITLTLEDSERN---ELWIPHYENPVSWPIGGELKPDGEHW 75 (365)
T ss_dssp CEEEEEEEEEEE----ECTTGGGSTTCEEEE---EEEEEEEEEEEEECSSC---EEECTTCSSCBCCCTTSCCCCSCGGG
T ss_pred EEEEEecceEEE----ecccEEecCCCEEEE---EEccCcEEEEEEECCCc---EEEecCCCcceeeecccCCCCCCChH
Confidence 478999999999 799974 666666 89999999999987642 3332210 0 11 1223
Q ss_pred hHHHHHHHHHHHH---cCC-CCcEEEEEeecCCC----CCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---
Q 016716 138 NLIIKALNLYRKK---TES-DNFFWIHLDKKVPS----GAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG--- 206 (384)
Q Consensus 138 Nli~ka~~~~~~~---~g~-~~g~~I~I~k~IP~----gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie--- 206 (384)
|++..+++.+.++ .|. ..|++|+|+++||. ++|||||||+++|++.|++++++.+++.++|+++|.++|
T Consensus 76 ~yv~~~i~~~~~~~~~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~ 155 (365)
T 3k17_A 76 TFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVV 155 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 8999998887654 344 36999999999996 679999999999999999999999999999999998755
Q ss_pred ------cCcceeecCCeEEEccC-----------------------CceeeeCCCCCCCCccEEEEcCCCCcchHHHHhh
Q 016716 207 ------SDIPFFFSHGAAYCTGR-----------------------GEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKH 257 (384)
Q Consensus 207 ------~Dvp~~~~GG~a~~~g~-----------------------Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~ 257 (384)
.|++++.+||+++.... +..+++++. |.+ ++++++|+.+.+|+++++.
T Consensus 156 ~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~--~~~-~lll~~t~~~~sT~~~~~~ 232 (365)
T 3k17_A 156 QGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEE--PVP-TFSVGWTGTPVSTGKLVSQ 232 (365)
T ss_dssp HSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECC--CSS-EEEEEECSCCCCHHHHHHH
T ss_pred CCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccC--Ccc-cEEEEECCCccchHHHHHH
Confidence 37888889998776421 445666653 346 8999999999999999988
Q ss_pred hccccCCCCC------------HHHHHHHHHhCCCch--HHH---hccccccc-----cccchHHHHHHHHHHHcCCCCC
Q 016716 258 LRLDQTTKVD------------PLTLLEQISRNGLSQ--DVC---INDLEAPA-----FQVLPSLKRLKQRIIAAGRGQY 315 (384)
Q Consensus 258 l~~~~~~~~d------------~~~ll~al~~~d~~~--~~~---~NdLe~~~-----~~~~p~l~~l~~~l~~~Ga~~~ 315 (384)
++.......+ ...+..+|.++|+.. ..| ++.|+.+. ...+|+++++++.+++.|+
T Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~~Ga--- 309 (365)
T 3k17_A 233 IHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGG--- 309 (365)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTS---
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHhcCC---
Confidence 7542111110 123567888888653 222 23333321 1268999999999999997
Q ss_pred Cceeeeccc--cceeEeccCC-Cccchhhc
Q 016716 316 DAVFMSGSG--STIVGIGSPD-PPQFIYDD 342 (384)
Q Consensus 316 ~ga~mSGSG--~tvfal~~~~-~a~~i~~~ 342 (384)
. ++|||+| +|+|++++++ .++++.++
T Consensus 310 ~-ak~sGAGgGg~vial~~~~~~~~~l~~~ 338 (365)
T 3k17_A 310 A-GKSSGSGGGDCGIAFSKTKELAEKLVNE 338 (365)
T ss_dssp E-EEECTTCSSSEEEEEESSHHHHHHHHHH
T ss_pred E-EEecCCCCCCEEEEEECCHHHHHHHHHH
Confidence 6 8999998 8999999863 34444443
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.91 E-value=5.6e-24 Score=207.92 Aligned_cols=258 Identities=14% Similarity=0.114 Sum_probs=172.6
Q ss_pred cceeEEecccc-cCccCCC--ccccccccccc-CcccEEEEEeCCCCCceEE---EeeCCCC-CCC--CChHHHHHHHHH
Q 016716 78 SPCKINAFLRI-TNKREDG--FHDLASLFHVI-SLGDTIKFSLSPLKSRDRL---STNVPGI-PVD--DSNLIIKALNLY 147 (384)
Q Consensus 78 aPAKiNL~L~I-~g~~~dG--yh~L~sl~~~I-~l~d~v~i~~~~~~~~~~l---~~~~~~l-p~d--~~Nli~ka~~~~ 147 (384)
|-|-.|+.|.= -||+..- -..-.||...+ ++|.+-+++. ++...+.+ ..+.... ..+ .++-..+.++.+
T Consensus 5 a~a~~nialiKYwGk~d~~l~lP~n~SiS~tl~~~~t~T~v~~-~~~~~d~~~~~~lng~~~~~~~~~~~~~~~~~i~~~ 83 (323)
T 3lto_A 5 AQAPANIALIKYMGKKDENSNLPDNSSLSYTLSNLLSSVKLEK-LPTKKDIWEPLTIPGAPEFNLSVEAQKRFIDHLVRL 83 (323)
T ss_dssp EEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEEEEEEEEEEEE-CSSSSCEECCBCTTSSBCCCCCSHHHHHHHHHHHHH
T ss_pred EEecchhHHhHhcCcccccccCCCCCceeEEcCCCeeEEEEEe-cCCCCCeeeeEEECCEeccccccccchhHHHHHHHH
Confidence 33444554322 4776322 11122444555 5667666766 43223555 3333210 111 112345667778
Q ss_pred HHHcCCCCcEEEEEeecCCCCCCCCchHHHHHHHH----HHHHHhhCCCC-CHHHHHHHHhhcccCcceeecCCeEE-Ec
Q 016716 148 RKKTESDNFFWIHLDKKVPSGAGLGGGSSNAATAL----WAANQFNGCVA-TEKELQEWSSEIGSDIPFFFSHGAAY-CT 221 (384)
Q Consensus 148 ~~~~g~~~g~~I~I~k~IP~gaGLGSSSA~aaA~l----~Aln~l~g~~l-s~~eL~~la~~ie~Dvp~~~~GG~a~-~~ 221 (384)
+++++...+++|+++++||.++|||||||++||++ .|+|+++|+++ +++||.++|.+++++++.+++||+++ ..
T Consensus 84 l~~~~~~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsGsaa~si~GG~v~~~~ 163 (323)
T 3lto_A 84 KEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALWTG 163 (323)
T ss_dssp HHHHTCCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCGGGGGGGSCSEEEEET
T ss_pred HHHhCCCCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCcchhhhCCEEEEec
Confidence 88888888999999999999999999999999999 99999999999 99999999998888898899999985 45
Q ss_pred cCCceeeeCCCCCCCCccEE-EEcCC--CCcchHHHHhhhccccCCC-------CCHHHHHHHHHhCCCch--HH-Hhc-
Q 016716 222 GRGEVVQDIPPPIPLDVPMV-LIKPR--EACPTAEVYKHLRLDQTTK-------VDPLTLLEQISRNGLSQ--DV-CIN- 287 (384)
Q Consensus 222 g~Ge~l~~l~~~~p~~~~iv-Iv~P~--~~vsT~~a~~~l~~~~~~~-------~d~~~ll~al~~~d~~~--~~-~~N- 287 (384)
|+++.+. .++| ++.++ ++.|. ..++|.++++.++....-. .+...++.+|.++|+.. .. +.|
T Consensus 164 g~~~~l~---~~~~-~l~~~v~vi~~~~~~vsT~~~~~~l~~~~~~~~~~~~~~~~~~~l~~AL~~gD~~~l~~~~~~d~ 239 (323)
T 3lto_A 164 DKVSAID---LPYK-DLLHQVIVISSQEKEIPSRVAHKLVKTSPFYETRSERAEANLKLLLNAFENKDWTSIYQICWHEF 239 (323)
T ss_dssp TEEEECC---CSCC-SCEEEEEECCCCTTCCCHHHHHHHGGGSTTTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcEEEcc---CCCC-CCeEEEEEECCCCCCCCCHHHHhhcccChhHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5444432 1223 45554 34454 4589999999865321110 11235778999999754 22 222
Q ss_pred -cc-c------ccccccchHHHHHHHHHHH----cCCCCCCceeeeccccceeEeccCCCccchhhcc
Q 016716 288 -DL-E------APAFQVLPSLKRLKQRIIA----AGRGQYDAVFMSGSGSTIVGIGSPDPPQFIYDDN 343 (384)
Q Consensus 288 -dL-e------~~~~~~~p~l~~l~~~l~~----~Ga~~~~ga~mSGSG~tvfal~~~~~a~~i~~~~ 343 (384)
.| + |++..+.|...++++.+.+ .|+ .++++||+||++++++..++.+++.+.+
T Consensus 240 ~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~---~~~~tsgAGPnv~~l~~~~~~~~v~~~l 304 (323)
T 3lto_A 240 LDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGD---GPVVTMDAGPNVHLLYRSDQTDLARQFK 304 (323)
T ss_dssp HHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSC---CCEEECCSSSCEEEEECGGGHHHHHHHH
T ss_pred HHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCC---eEEEEECCCCCeEEEEecccHHHHHHHH
Confidence 35 2 6777788988888777755 566 7899999999999999877666665443
No 25
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.91 E-value=4.2e-24 Score=207.56 Aligned_cols=253 Identities=14% Similarity=0.151 Sum_probs=182.2
Q ss_pred eEEEEcceeEEecccccCccC---CCcccccccccccCcccEEEEEeCCCCCceEEEeeCCC----C-CCCCChHHHHHH
Q 016716 73 RLTLFSPCKINAFLRITNKRE---DGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPG----I-PVDDSNLIIKAL 144 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~---dGyh~L~sl~~~I~l~d~v~i~~~~~~~~~~l~~~~~~----l-p~d~~Nli~ka~ 144 (384)
+++|+||||+.| +|+|. +|+..|. .+|++|.+++++++++ ..+.....+ + +.++.+++..++
T Consensus 1 mi~v~apGKviL----~GEhaVv~~G~~Ala---~ai~~~~~v~i~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~i 70 (335)
T 3gon_A 1 MIAVKTCGKLYW----AGEYAILEPGQLALI---KDIPIYMRAEIAFSDS---YRIYSDMFDFAVDLRPNPDYSLIQETI 70 (335)
T ss_dssp CEEEEEEEEEEE----ECTTGGGSTTCEEEE---EEEEEEEEEEEEECSS---CEEEETTSSSCBCSSCCTTTHHHHHHH
T ss_pred CEEEEECCEEEE----EeeeeEEcCCCcEEE---EEecceEEEEEEECCC---CEEEEeCCCcccccCcCCCcHHHHHHH
Confidence 378999999999 79995 3887776 8999999999998764 344433221 1 222456666665
Q ss_pred HHHHH---HcCCC-CcEEEEEeecCCCC---CCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcc---------cC
Q 016716 145 NLYRK---KTESD-NFFWIHLDKKVPSG---AGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIG---------SD 208 (384)
Q Consensus 145 ~~~~~---~~g~~-~g~~I~I~k~IP~g---aGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie---------~D 208 (384)
+.+.+ ..+.. .++++.|.++||.+ +|||||||.++|++.|++++++.++++++++++|.++| .|
T Consensus 71 ~~~~~~l~~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg~D 150 (335)
T 3gon_A 71 ALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGD 150 (335)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHH
T ss_pred HHHHHHHHHcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 55443 34543 69999999999988 59999999999999999999999999999999999876 25
Q ss_pred cceeecCCeEEEccC----------------------CceeeeCCCCCCCCccEEEEcCCCCcchHHHHhhhccccCCCC
Q 016716 209 IPFFFSHGAAYCTGR----------------------GEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKV 266 (384)
Q Consensus 209 vp~~~~GG~a~~~g~----------------------Ge~l~~l~~~~p~~~~ivIv~P~~~vsT~~a~~~l~~~~~~~~ 266 (384)
+.+..+||+++.... ...+.+++ .|.+++++++.++...+|+++++.++... ...
T Consensus 151 ~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~t~~~v~~v~~~~-~~~ 227 (335)
T 3gon_A 151 LACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVK--PTLECDFLVGWTKEVAVSSHMVQQIKQNI-NQN 227 (335)
T ss_dssp HHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECC--CCSCCEEEEEECCCCCCHHHHHHHHGGGC-CHH
T ss_pred cceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcC--CccccceEEeecCChhhHHHHHHHHHHHh-HHH
Confidence 666667887654321 11223343 34578999999999999999998887542 111
Q ss_pred C-------HHHHHHHHHhCCCch--HHH---hccccc-cccccchHHHHHHHHHHHcCCCCCCceeeeccc--cceeEec
Q 016716 267 D-------PLTLLEQISRNGLSQ--DVC---INDLEA-PAFQVLPSLKRLKQRIIAAGRGQYDAVFMSGSG--STIVGIG 331 (384)
Q Consensus 267 d-------~~~ll~al~~~d~~~--~~~---~NdLe~-~~~~~~p~l~~l~~~l~~~Ga~~~~ga~mSGSG--~tvfal~ 331 (384)
. ...+..+|..+|+.. ..| ++.|.. .....+|+++++++.+++.|+ +++|||+| +|+|+|+
T Consensus 228 ~~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~----~akltGAG~Ggc~ial~ 303 (335)
T 3gon_A 228 FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA----VAKSSGAGGGDCGIALS 303 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSE----EEEECTTCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCc----EEEEccccchheEEEEE
Confidence 1 123567888888654 222 233332 334458999999999988875 78999986 7999999
Q ss_pred cCC-Cccchhhc
Q 016716 332 SPD-PPQFIYDD 342 (384)
Q Consensus 332 ~~~-~a~~i~~~ 342 (384)
+++ .++++.++
T Consensus 304 ~~~~~~~~i~~~ 315 (335)
T 3gon_A 304 FDAQSTKTLKNR 315 (335)
T ss_dssp CSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 863 45555544
No 26
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.82 E-value=6.5e-20 Score=189.46 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=125.2
Q ss_pred HHHHHHHHhh-cccCCceeEEEEcceeEEecccccCccCC--CcccccccccccCcccEEEEEeC--CCCCceEEEee--
Q 016716 56 ERRNKLADEV-DREAPLSRLTLFSPCKINAFLRITNKRED--GFHDLASLFHVISLGDTIKFSLS--PLKSRDRLSTN-- 128 (384)
Q Consensus 56 ~~~~~~~~~~-~~~~~~~~~~v~aPAKiNL~L~I~g~~~d--Gyh~L~sl~~~I~l~d~v~i~~~--~~~~~~~l~~~-- 128 (384)
+|++++.+.+ ..|...+.+.++||+|+|| +|+|.| |+.. +.++|+++..+.+++. ++. .+++...
T Consensus 21 ~R~~~l~~~F~~~fg~~p~~v~~APGRVnL----iGEHtDyngG~V---Lp~AI~~~~~vav~~~~~~d~-~i~i~S~~~ 92 (520)
T 3v2u_C 21 QKHLAVVDAFFQTYHVKPDFIARSPGRVNL----IGEHIDYCDFSV---LPLAIDVDMLCAVKILDEKNP-SITLTNADP 92 (520)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEEEEEEEEE----ECTTCGGGTCCB---EEEEEEEEEEEEEEECCCSSC-EEEEEESST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcceeEEE----eccCeeeCCCEE---EEEEeecceEEEEEeccCCCC-EEEEEECCC
Confidence 4999999884 4455556788999999999 899987 4444 4489999999999986 332 2343321
Q ss_pred --------C--CC--CCC-----CCChHHHHHHH----HHHHHc-----CC-CCcEEEEEeecCCCCCCCCchHHHHHHH
Q 016716 129 --------V--PG--IPV-----DDSNLIIKALN----LYRKKT-----ES-DNFFWIHLDKKVPSGAGLGGGSSNAATA 181 (384)
Q Consensus 129 --------~--~~--lp~-----d~~Nli~ka~~----~~~~~~-----g~-~~g~~I~I~k~IP~gaGLGSSSA~aaA~ 181 (384)
. .+ +.. .|.|++..+++ .+.+.. |. ..|+++.|.++||.|+|| |||..+|+
T Consensus 93 ~~~~~~~~l~~~~~~~~i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~ 170 (520)
T 3v2u_C 93 KFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAA 170 (520)
T ss_dssp TSCCEEEECCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHH
T ss_pred CCCceEEEeccCccccccCcccccHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHH
Confidence 1 11 111 24588876543 333321 22 369999999999999999 99999999
Q ss_pred HHHHHHhh---CCCCCHHHHHHHHhhccc--Ccce-------eecCC---eEEEccCC-ceeeeCCCCC--CCCccEEEE
Q 016716 182 LWAANQFN---GCVATEKELQEWSSEIGS--DIPF-------FFSHG---AAYCTGRG-EVVQDIPPPI--PLDVPMVLI 243 (384)
Q Consensus 182 l~Aln~l~---g~~ls~~eL~~la~~ie~--Dvp~-------~~~GG---~a~~~g~G-e~l~~l~~~~--p~~~~ivIv 243 (384)
+.|+++++ +..+++.+|+++|.++|. ++|+ ...|+ ..+..-+- -.+++++.+. ..++.++|+
T Consensus 171 ~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~~l~~~~v~~p~~~~~~~~~vI~ 250 (520)
T 3v2u_C 171 ALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIA 250 (520)
T ss_dssp HHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSSSCEEEEECCCCCSSCEEEEEEE
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCCCceeEEeeCCCccCCCeEEEEE
Confidence 99999998 778999999999999884 2332 22333 33333222 2344454321 027899999
Q ss_pred cCCC
Q 016716 244 KPRE 247 (384)
Q Consensus 244 ~P~~ 247 (384)
++++
T Consensus 251 ns~v 254 (520)
T 3v2u_C 251 NTLV 254 (520)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9987
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.82 E-value=5.8e-20 Score=183.86 Aligned_cols=262 Identities=15% Similarity=0.140 Sum_probs=176.1
Q ss_pred eEEEEcceeEEecccccCccCCC--cccccccccccC---cccEEEEEeCCCCCceEEEeeCCCCCCCCChHHHHHHHHH
Q 016716 73 RLTLFSPCKINAFLRITNKREDG--FHDLASLFHVIS---LGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLY 147 (384)
Q Consensus 73 ~~~v~aPAKiNL~L~I~g~~~dG--yh~L~sl~~~I~---l~d~v~i~~~~~~~~~~l~~~~~~lp~d~~Nli~ka~~~~ 147 (384)
.++.+||.-|=| ..=-||+..- -..-.||...++ ++.+-+|+.+++...+.+..+....+. ....+.++++.+
T Consensus 23 ~~t~~A~~NIAl-IKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~-~~~ri~~~l~~i 100 (414)
T 3f0n_A 23 MVTCTAPVNIAV-IKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDV-GQPRLQACLREI 100 (414)
T ss_dssp EEEEEECCEEEE-ECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECT-TCHHHHHHHHHH
T ss_pred eEEEEecccchh-hhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCc-ccHHHHHHHHHH
Confidence 366666655533 1113665321 111235556665 788777776654323566665433332 357899999999
Q ss_pred HHHcCCC--------------CcEEEEEeecCCCCCCCCchHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhcccCcceee
Q 016716 148 RKKTESD--------------NFFWIHLDKKVPSGAGLGGGSSNAATALWAANQFNGCVATEKELQEWSSEIGSDIPFFF 213 (384)
Q Consensus 148 ~~~~g~~--------------~g~~I~I~k~IP~gaGLGSSSA~aaA~l~Aln~l~g~~ls~~eL~~la~~ie~Dvp~~~ 213 (384)
++.++.. .+++|+++++||.++|||||||++||++.|+|+++++ +++|.++|.+++++++.++
T Consensus 101 R~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~s~ 177 (414)
T 3f0n_A 101 RRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSL 177 (414)
T ss_dssp HHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGGGG
T ss_pred HHHhcccccccccccccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcchHh
Confidence 9887653 5899999999999999999999999999999999998 4799999999998988888
Q ss_pred cCCeEEE-cc---CCce--eeeCC--CCCCCCccEEEEcCCCC----cchHHHHhhhcccc-----CC---CCCHHHHHH
Q 016716 214 SHGAAYC-TG---RGEV--VQDIP--PPIPLDVPMVLIKPREA----CPTAEVYKHLRLDQ-----TT---KVDPLTLLE 273 (384)
Q Consensus 214 ~GG~a~~-~g---~Ge~--l~~l~--~~~p~~~~ivIv~P~~~----vsT~~a~~~l~~~~-----~~---~~d~~~ll~ 273 (384)
+||+++. .+ .|.. ..+++ ..+| ++.++++.|+.. .||+.+++.++... .. ......++.
T Consensus 178 ~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp-~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~~ 256 (414)
T 3f0n_A 178 YGGFVEWQMGEQADGKDSIARQIAPEWHWP-QLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTR 256 (414)
T ss_dssp SSSEEEECCCSCTTCTTCCEEEEECTTSCT-TEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHHH
T ss_pred hCCEEEEEeccCCCCCceEEEEcccccCCC-CceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHHH
Confidence 9999775 33 1222 12332 2233 688888875443 25787776554311 00 011234778
Q ss_pred HHHhCCCch--HH-Hhc--cc-c------ccccccchHHHHHHHHHHHc-----CCCCCCceeeeccccceeEeccCCCc
Q 016716 274 QISRNGLSQ--DV-CIN--DL-E------APAFQVLPSLKRLKQRIIAA-----GRGQYDAVFMSGSGSTIVGIGSPDPP 336 (384)
Q Consensus 274 al~~~d~~~--~~-~~N--dL-e------~~~~~~~p~l~~l~~~l~~~-----Ga~~~~ga~mSGSG~tvfal~~~~~a 336 (384)
+|.++|+.. .. +.| .| + |++..+.|...++++.+.+. |+ .+++.||+||+|++++.+++.
T Consensus 257 AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~---~~~~tsdAGPnv~vl~~~~~~ 333 (414)
T 3f0n_A 257 CIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQT---KVAYTFDAGPNAVIFTLEDTV 333 (414)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSC---CEEEECCSSSCEEEEEEHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCc---eEEEEECCCCCEEEEEecccH
Confidence 999998764 22 333 24 3 56666788888888777665 55 789999999999999987666
Q ss_pred cchhhcc
Q 016716 337 QFIYDDN 343 (384)
Q Consensus 337 ~~i~~~~ 343 (384)
+++.+.+
T Consensus 334 ~~v~~~l 340 (414)
T 3f0n_A 334 AEFVAAV 340 (414)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
Done!