BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016717
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 139/279 (49%), Gaps = 15/279 (5%)
Query: 72 LPFIVLHGISDKCTN----RGVTQFTELLSSWSGSQGYCIEIG----DGAWDSWTMPLFQ 123
LP ++ HG+ D C N + + E G +EIG + +S+ + +
Sbjct: 6 LPLVIWHGMGDSCCNPLSMGAIKKMVE--KKIPGIHVLSLEIGKTLREDVENSFFLNVNS 63
Query: 124 QTAIACEKVKNMSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAGIAAI 183
Q C+ + +L GYN +G SQG R + + C PP+ NLIS+ G H G+ +
Sbjct: 64 QVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPS-PPMVNLISVGGQHQGVFGL 122
Query: 184 PLC--GFLPICILLDALVKLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEI 241
P C IC + + Y+ +Q+ L + Y+ P Y FL +N E
Sbjct: 123 PRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE- 181
Query: 242 VNERNSTYKERFASLENLVLIMFEQDSVLVPKETSWFGYYPDGSFDPLLPAQQTQLYTED 301
N +YK+ +L+ V++ F D+++ P ++ WFG+Y G +P Q++ LYT+D
Sbjct: 182 -RGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD 240
Query: 302 WIGLKTLDEAGKVKFINVTGSHLEISRSDMKKYIVPYLK 340
+GLK +D+AG++ F+ + G HL++S +I+P+L+
Sbjct: 241 RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 279
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 132/280 (47%), Gaps = 15/280 (5%)
Query: 72 LPFIVLHGISDKCTN----RGVTQFTELLSSWSGSQGYCIEIG----DGAWDSWTMPLFQ 123
LP ++ HG D C N + + E G +EIG + +S+ + +
Sbjct: 13 LPLVIWHGXGDSCCNPLSXGAIKKXVE--KKIPGIYVLSLEIGKTLXEDVENSFFLNVNS 70
Query: 124 QTAIACEKVKNMSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAGIAAI 183
Q C+ + +L GYN G SQG R + + C PP NLIS+ G H G+ +
Sbjct: 71 QVTTVCQALAKDPKLQQGYNAXGFSQGGQFLRAVAQRCPS-PPXINLISVGGQHQGVFGL 129
Query: 184 PLC--GFLPICILLDALVKLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEI 241
P C IC + + YS +Q+ L + Y+ P Y FL +N E
Sbjct: 130 PRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE- 188
Query: 242 VNERNSTYKERFASLENLVLIMFEQDSVLVPKETSWFGYYPDGSFDPLLPAQQTQLYTED 301
N +YK+ +L+ V + F DS++ P ++ WFG+Y G +P Q+T LYT+D
Sbjct: 189 -RGINESYKKNLXALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQD 247
Query: 302 WIGLKTLDEAGKVKFINVTGSHLEISRSDMKKYIVPYLKD 341
+GLK D AG++ F+ G HL++S +I+P+L +
Sbjct: 248 RLGLKEXDNAGQLVFLATEGDHLQLSEEWFYAHIIPFLGE 287
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 12/245 (4%)
Query: 73 PFIVLHGISDKCTN-RGVTQFTELLSSWSGSQGYCIEIGDGAWDSWTMPLFQQTAIACEK 131
P IV+HG+ D + R + ++ + G+ +++ DG PL++Q E
Sbjct: 38 PVIVVHGLFDSSYSFRHLLEYIN--ETHPGTVVTVLDLFDGR--ESLRPLWEQVQGFREA 93
Query: 132 VKN-MSQLSDGYNIIGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAG-IAAIPLCGFL 189
V M++ G ++I SQG ++ R ++ + V + ISL+ P G +L
Sbjct: 94 VVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHN-VDSFISLSSPQMGQYGDTDYLKWL 152
Query: 190 PICILLDALVKLEIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEIVNERNSTY 249
+ L ++ YS + Q+ + Y+ P YL FL +N E + + +
Sbjct: 153 FPTSMRSNLYRI-CYSPWGQE-FSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVW 210
Query: 250 KERFASLENLVLIMFEQDSVLVPKETSWFGYYPDGSFDPLLPAQQTQLYTEDWIGLKTLD 309
++ F + +LVLI D V+ P ++S+FG+Y + + +L ++ +Y D GLKTL
Sbjct: 211 RKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY--DANETVLEMEEQLVYLRDSFGLKTLL 268
Query: 310 EAGKV 314
G +
Sbjct: 269 ARGAI 273
>pdb|2J87|A Chain A, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|B Chain B, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|C Chain C, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
pdb|2J87|D Chain D, Structure Of Vaccinia Virus Thymidine Kinase In Complex
With Dttp: Insights For Drug Design
Length = 177
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 90 TQFTELLSSWSGSQGYCIEI---GDGAWDS--WTMPLFQQTAIACEKVKNMSQLSDGYNI 144
T+ + + +Q C+ I D + + WT A+ K+ ++ Q +++
Sbjct: 19 TELIRRVRRYQIAQYKCVTIKYSNDNRYGTGLWTHDKNNFEALEATKLCDVLQSITDFSV 78
Query: 145 IGLSQGNMIGRGIIEFCEGGPPVKNLISLAGPHAGIAAIPLCGFLPICILLDALVKL 201
IG+ +G I+EFCE ++ +A P L + IL + +VKL
Sbjct: 79 IGIDEGQFFP-DIVEFCERMANEGKIVIVAALDGTFQRKPFNNILNLLILSEMVVKL 134
>pdb|2H2R|A Chain A, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2R|B Chain B, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2T|B Chain B, Cd23 Lectin Domain, Calcium 2+-Bound
Length = 175
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 298 YTEDWIGLKTLDEAGKVKFINVTGSHLEIS 327
+T WIGL+ LD G +FI V GSH++ S
Sbjct: 70 HTGSWIGLRNLDLKG--EFIWVDGSHVDYS 97
>pdb|1T8C|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|1T8D|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|4EZM|G Chain G, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|H Chain H, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|I Chain I, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|J Chain J, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|K Chain K, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|L Chain L, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
Length = 143
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 298 YTEDWIGLKTLDEAGKVKFINVTGSHLEIS 327
+T WIGL+ LD G +FI V GSH++ S
Sbjct: 61 HTGSWIGLRNLDLKG--EFIWVDGSHVDYS 88
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 202 EIYSDFLQDHLAPSGYYKIPTDIPEYLKGCKFLPKLNNEIVNER----NSTYKERFASLE 257
IY+D+ +LA SG+ ++ D+ + + L ++ + NE+ N K R +E
Sbjct: 21 RIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIE 80
Query: 258 NL 259
N+
Sbjct: 81 NI 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,969,272
Number of Sequences: 62578
Number of extensions: 514363
Number of successful extensions: 1144
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 15
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)