BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016718
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
++F+ +H Y+L+P S K+ D +L VK+AF L G+ PLWD K FVG+L+
Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
DFI IL + + ELE H I W+ LQ + K PLV P
Sbjct: 89 DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
SL + +++NK+ +P+I +G+ IL + LK F +
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
+ + +Q+GT+ AN AM+R T + AL + VQ
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQ 221
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 76.3 bits (186), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P F W GG+ V LSGSF WS+ +P++ S+ F I LP G HQYKF+VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82 HDENQPHVSGNYGVVNCVYIAVPQPD 107
HD ++P V+ G VN + I V + D
Sbjct: 68 HDPSEPIVTSQLGTVNNI-IQVKKTD 92
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 74.7 bits (182), Expect = 7e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P F W GG+ V LSGSF WS+ +P + S+ F I LP G HQYKF+VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82 HDENQPHVSGNYGVVNCVYIAVPQPD 107
HD ++P V+ G VN + I V + D
Sbjct: 68 HDPSEPIVTSQLGTVNNI-IQVKKTD 92
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 72.0 bits (175), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P W GG+ V +SGSF WS +P+ S F I LP G HQYKF+VDG+W
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHN---DFVAILDLPEGEHQYKFFVDGQWV 67
Query: 82 HDENQPHVSGNYGVVN 97
HD ++P V+ G +N
Sbjct: 68 HDPSEPVVTSQLGTIN 83
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
I +F+ + T Y++LP S ++ DV L VK + +L + PLWD +F G+L+
Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
DF+ +++ S+ E + ++ K +L R+++ P + P
Sbjct: 75 ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
SL + L + +++ +P+I G GS + I+ + + ILK I + K ++ +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 328 QQPVSSIQLGTW 339
+ P++ + +GTW
Sbjct: 181 RVPLNQMTIGTW 192
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
I +F+ + T Y++LP S ++ DV L VK + +L + PLWD +F G+L+
Sbjct: 14 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
DF+ +++ S+ E + ++ K +L R+++ P + P
Sbjct: 74 ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
SL + L + +++ +P+I G GS + I+ + + ILK I + K ++ +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 328 QQPVSSIQLGTW 339
+ P++ + +GTW
Sbjct: 180 RVPLNQMTIGTW 191
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
S++VPV W GG +V ++GSFT+W + + + P F + RL PG H+++F VD
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78 GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
E R + P + G VN YI V QP+ P E + E D MRP +
Sbjct: 61 NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 30/156 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
QL+ + I FL++ T Y++LP S ++ LD +L VK++ +VL + + PLWD RF
Sbjct: 17 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
G+L+ DFI +++ +N EL V KLQL +++R Q+D
Sbjct: 77 AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
RPL +A LK+L+++ +P+I
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLI 151
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 30/156 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
QL+ + I FL++ T Y++LP S ++ LD +L VK++ +VL + + PLWD RF
Sbjct: 10 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
G+L+ DFI +++ +N EL V KLQL +++R Q+D
Sbjct: 70 AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
RPL +A LK+L+++ +P+I
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLI 144
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29 NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
G RV +SG W + +P++ +G F I+ R LP G +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88 HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
+ N G N V P V T S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 276
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 276 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335
K ++++ V P G+ L +S L+ + R + ++ L ++ V I+
Sbjct: 116 KARRDRLTKVAEEKKKNPKGTVSTKAPLCVVSG-LQEVTRTIEKKTARLVLIANNVDPIE 174
Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSAL 364
L W+P + AN P+A+++ A LG A+
Sbjct: 175 LVLWMPTLCRANKIPYAIVKDKARLGDAI 203
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 187 GLPMVPLWDDFKGRFVGVLSALDFIL---ILREL-GTNGSNLTEEE--LETHTISAWKVG 240
LP+V D +G VG++ D + I+R + T + +EEE LE+H ++
Sbjct: 159 ALPVV----DSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKF 214
Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
+LQL K R ++ A P+ ++ EVALK+ + + +P+I G ++
Sbjct: 215 ELQLPNK----PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG------DL 264
Query: 301 LYLASLSDILKCICR 315
+ L D+LK + +
Sbjct: 265 IGLIRDFDLLKVLVK 279
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLA-----VKQAFHVLYEQGLPMVPLWD 195
L RD I + L E++ D DV +A +K + G +P+
Sbjct: 130 LITERDVIRALLDKIDENEVIDDY---ITRDVIVATPGERLKDVARTMVRNGFRRLPVVS 186
Query: 196 DFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGR 255
+ GR VG++++ DFI +L GS+ ++T + +++ +KR
Sbjct: 187 E--GRLVGIITSTDFIKLL------GSDWAFNHMQTGNVREITNVRMEEIMKRD------ 232
Query: 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290
++ A D LK++A ++ N + +P++
Sbjct: 233 -----VITAKEGDKLKKIAEIMVTNDIGALPVVDE 262
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 286 PIIHSTGPAG-----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340
P +H GP G + E L + HF H+ S + +P + + G W
Sbjct: 388 PGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPETEVATGGWR 447
Query: 341 PRIGEANGRPFAMLRPTAS----LGSALALLVQG 370
P P A L PT S G LL G
Sbjct: 448 PSARPGARAPHAWLTPTTSTLDLFGRGFVLLSFG 481
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 286 PIIHSTGPAG-----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340
P +H GP G + E L + HF H+ S + +P + + G W
Sbjct: 388 PGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPETEVATGGWR 447
Query: 341 PRIGEANGRPFAMLRPTAS----LGSALALLVQG 370
P P A L PT S G LL G
Sbjct: 448 PSARPGARAPHAWLTPTTSTLDLFGRGFVLLSFG 481
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
Length = 390
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 46 PMPMSPSEGCPAVFQIICRLPPG----HHQYKF 74
P+ + P EG PAV I+CRL G + Y+F
Sbjct: 75 PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 107
>pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HZ0|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 213
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 46 PMPMSPSEGCPAVFQIICRLPPG----HHQYKF 74
P+ + P EG PAV I+CRL G + Y+F
Sbjct: 64 PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 96
>pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv
Co-Complexed With Inhibitor
pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv
Co-Complexed With Inhibitor
Length = 201
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 46 PMPMSPSEGCPAVFQIICRLPPG----HHQYKF 74
P+ + P EG PAV I+CRL G + Y+F
Sbjct: 61 PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 93
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 56 PAVFQIICRLPPGHHQYKFYVDGEWR 81
P ++Q+ LP G +QYK +D W
Sbjct: 196 PNLYQLSGTLPAGTYQYKIALDHSWN 221
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,446,681
Number of Sequences: 62578
Number of extensions: 542941
Number of successful extensions: 1096
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 33
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)