Query 016718
Match_columns 384
No_of_seqs 298 out of 2694
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3448 CBS-domain-containing 99.9 6.3E-26 1.4E-30 210.0 14.5 166 120-317 205-375 (382)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.5E-24 3.3E-29 168.6 9.8 79 20-101 1-79 (79)
3 KOG1764 5'-AMP-activated prote 99.9 1.6E-22 3.5E-27 200.6 16.7 213 143-379 54-267 (381)
4 cd02861 E_set_proteins_like E 99.8 2.9E-18 6.4E-23 134.3 9.5 77 21-100 2-81 (82)
5 COG2524 Predicted transcriptio 99.7 1.1E-17 2.5E-22 152.9 12.9 121 155-315 172-292 (294)
6 cd04618 CBS_pair_5 The CBS dom 99.7 6.1E-16 1.3E-20 124.8 11.7 97 166-312 2-98 (98)
7 KOG1616 Protein involved in Sn 99.7 2.4E-16 5.1E-21 151.0 9.2 89 17-106 76-164 (289)
8 cd04641 CBS_pair_28 The CBS do 99.6 3.4E-14 7.4E-19 117.9 14.1 119 166-312 2-120 (120)
9 COG3448 CBS-domain-containing 99.6 1.7E-14 3.6E-19 134.5 12.3 154 199-378 198-352 (382)
10 cd04642 CBS_pair_29 The CBS do 99.5 1.2E-13 2.6E-18 115.7 12.2 125 166-312 2-126 (126)
11 cd04603 CBS_pair_KefB_assoc Th 99.5 1.5E-13 3.2E-18 112.7 11.6 110 166-312 2-111 (111)
12 COG3620 Predicted transcriptio 99.5 2.4E-13 5.1E-18 116.2 12.3 122 154-315 64-185 (187)
13 cd04619 CBS_pair_6 The CBS dom 99.5 5.9E-13 1.3E-17 109.5 14.2 112 166-311 2-113 (114)
14 PRK10892 D-arabinose 5-phospha 99.5 3E-13 6.4E-18 132.5 13.9 124 153-312 200-323 (326)
15 PRK15094 magnesium/cobalt effl 99.5 8.8E-13 1.9E-17 127.2 16.5 171 145-367 55-227 (292)
16 TIGR03520 GldE gliding motilit 99.5 1.1E-12 2.3E-17 132.3 17.3 168 145-367 179-348 (408)
17 cd04617 CBS_pair_4 The CBS dom 99.5 1.2E-12 2.6E-17 108.3 13.6 112 166-311 2-117 (118)
18 cd04630 CBS_pair_17 The CBS do 99.5 2E-12 4.4E-17 106.1 14.3 113 166-312 2-114 (114)
19 cd04614 CBS_pair_1 The CBS dom 99.5 9.8E-13 2.1E-17 105.4 11.9 95 166-312 2-96 (96)
20 cd04627 CBS_pair_14 The CBS do 99.4 1.8E-12 3.8E-17 108.0 13.6 120 166-310 2-121 (123)
21 PRK11543 gutQ D-arabinose 5-ph 99.4 1.1E-12 2.3E-17 128.2 13.9 123 154-312 196-318 (321)
22 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.6E-12 3.5E-17 107.9 12.6 124 164-312 1-124 (124)
23 COG2905 Predicted signal-trans 99.4 1.1E-12 2.4E-17 131.9 12.9 124 155-316 149-272 (610)
24 TIGR00400 mgtE Mg2+ transporte 99.4 1.8E-12 3.9E-17 132.3 14.0 169 144-380 118-293 (449)
25 PRK07807 inosine 5-monophospha 99.4 5.5E-12 1.2E-16 129.0 17.4 126 148-316 82-207 (479)
26 cd04607 CBS_pair_NTP_transfera 99.4 4.3E-12 9.3E-17 103.8 13.6 110 166-311 3-112 (113)
27 COG2524 Predicted transcriptio 99.4 6.7E-13 1.5E-17 121.8 9.2 96 256-379 177-272 (294)
28 cd04623 CBS_pair_10 The CBS do 99.4 6.2E-12 1.3E-16 102.2 13.9 112 166-312 2-113 (113)
29 cd04608 CBS_pair_PALP_assoc Th 99.4 1.6E-12 3.4E-17 109.2 10.7 113 166-313 3-124 (124)
30 cd04593 CBS_pair_EriC_assoc_ba 99.4 6.3E-12 1.4E-16 103.2 13.6 113 167-312 3-115 (115)
31 PRK01862 putative voltage-gate 99.4 4.3E-12 9.4E-17 133.5 15.0 132 149-315 441-572 (574)
32 cd04605 CBS_pair_MET2_assoc Th 99.4 1.3E-11 2.8E-16 100.2 14.5 108 165-311 2-109 (110)
33 cd04586 CBS_pair_BON_assoc Thi 99.4 3.8E-12 8.2E-17 107.9 11.7 132 164-312 1-135 (135)
34 cd04632 CBS_pair_19 The CBS do 99.4 8.7E-12 1.9E-16 104.4 13.7 126 166-312 2-128 (128)
35 cd04621 CBS_pair_8 The CBS dom 99.4 7.1E-12 1.5E-16 106.9 12.9 130 166-311 2-134 (135)
36 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.3E-11 2.9E-16 100.3 13.9 109 166-311 2-110 (111)
37 cd04639 CBS_pair_26 The CBS do 99.4 8.8E-12 1.9E-16 101.4 12.7 109 166-311 2-110 (111)
38 cd04643 CBS_pair_30 The CBS do 99.4 1.1E-11 2.4E-16 101.5 12.9 115 166-312 2-116 (116)
39 cd04629 CBS_pair_16 The CBS do 99.4 1.1E-11 2.3E-16 101.3 12.5 113 166-312 2-114 (114)
40 cd04626 CBS_pair_13 The CBS do 99.4 1.3E-11 2.9E-16 100.4 13.0 109 166-311 2-110 (111)
41 cd04801 CBS_pair_M50_like This 99.4 8E-12 1.7E-16 102.4 11.7 109 166-311 2-113 (114)
42 cd04589 CBS_pair_CAP-ED_DUF294 99.4 2.1E-11 4.5E-16 99.3 14.0 110 166-312 2-111 (111)
43 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1E-11 2.2E-16 100.1 11.6 104 166-311 2-105 (106)
44 cd04636 CBS_pair_23 The CBS do 99.4 1.4E-11 3E-16 104.0 12.9 131 166-312 2-132 (132)
45 cd04803 CBS_pair_15 The CBS do 99.3 1.8E-11 3.8E-16 101.3 13.1 120 166-312 2-122 (122)
46 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 4.5E-11 9.7E-16 122.2 18.5 124 149-316 82-205 (475)
47 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.9E-11 6.3E-16 98.2 13.9 108 165-311 2-109 (110)
48 cd04631 CBS_pair_18 The CBS do 99.3 1.7E-11 3.6E-16 101.9 12.7 122 166-312 2-125 (125)
49 PRK05567 inosine 5'-monophosph 99.3 8.4E-11 1.8E-15 121.2 20.6 116 157-314 89-205 (486)
50 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.5E-11 3.3E-16 100.1 12.1 112 166-311 2-113 (114)
51 cd04637 CBS_pair_24 The CBS do 99.3 4.2E-11 9.2E-16 99.1 15.0 121 166-312 2-122 (122)
52 cd04624 CBS_pair_11 The CBS do 99.3 3.2E-11 7E-16 98.2 13.8 110 166-311 2-111 (112)
53 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.6E-11 5.6E-16 98.7 12.8 101 166-312 3-105 (105)
54 cd04615 CBS_pair_2 The CBS dom 99.3 3.6E-11 7.8E-16 98.1 13.7 110 167-311 3-112 (113)
55 cd04625 CBS_pair_12 The CBS do 99.3 4.7E-11 1E-15 97.2 14.2 111 166-312 2-112 (112)
56 cd04633 CBS_pair_20 The CBS do 99.3 2.9E-11 6.2E-16 99.9 12.9 120 166-312 2-121 (121)
57 cd04620 CBS_pair_7 The CBS dom 99.3 3.6E-11 7.7E-16 98.5 13.2 110 166-311 2-114 (115)
58 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 4E-11 8.6E-16 97.2 13.2 110 166-312 2-111 (111)
59 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.4E-11 5.2E-16 98.7 11.8 105 166-311 3-107 (108)
60 COG0517 FOG: CBS domain [Gener 99.3 4.8E-11 1E-15 97.7 13.7 110 165-310 7-117 (117)
61 cd04588 CBS_pair_CAP-ED_DUF294 99.3 5.5E-11 1.2E-15 96.5 13.8 108 166-311 2-109 (110)
62 cd04587 CBS_pair_CAP-ED_DUF294 99.3 4.7E-11 1E-15 97.2 13.4 111 166-311 2-112 (113)
63 cd04800 CBS_pair_CAP-ED_DUF294 99.3 7.5E-11 1.6E-15 95.8 14.3 109 166-311 2-110 (111)
64 cd04640 CBS_pair_27 The CBS do 99.3 3.9E-11 8.4E-16 100.5 12.5 116 166-311 2-125 (126)
65 cd04635 CBS_pair_22 The CBS do 99.3 3.8E-11 8.2E-16 99.3 12.3 118 166-312 2-122 (122)
66 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 7.7E-11 1.7E-15 95.5 13.8 109 166-311 2-110 (111)
67 cd04585 CBS_pair_ACT_assoc2 Th 99.3 5.6E-11 1.2E-15 97.7 13.2 121 166-312 2-122 (122)
68 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 5.8E-11 1.3E-15 95.9 13.0 106 166-311 3-108 (109)
69 cd04802 CBS_pair_3 The CBS dom 99.3 1.1E-10 2.4E-15 95.0 14.6 110 166-311 2-111 (112)
70 TIGR01302 IMP_dehydrog inosine 99.3 9.1E-11 2E-15 119.8 17.3 128 143-314 71-201 (450)
71 cd04594 CBS_pair_EriC_assoc_ar 99.3 4.1E-11 9E-16 96.8 11.5 100 168-311 4-103 (104)
72 PLN02274 inosine-5'-monophosph 99.3 9.1E-11 2E-15 120.9 16.2 131 141-315 89-223 (505)
73 PRK14869 putative manganese-de 99.3 5E-11 1.1E-15 124.8 14.3 216 155-380 68-376 (546)
74 cd04622 CBS_pair_9 The CBS dom 99.3 1.4E-10 3E-15 94.5 13.9 111 166-311 2-112 (113)
75 cd02858 Esterase_N_term Estera 99.3 3.1E-11 6.7E-16 95.1 9.0 75 22-99 7-83 (85)
76 PRK07107 inosine 5-monophospha 99.3 9.5E-11 2.1E-15 120.6 15.0 108 168-313 108-219 (502)
77 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.3E-10 2.8E-15 94.6 12.5 111 166-311 3-113 (114)
78 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.5E-10 3.1E-15 93.6 12.6 109 166-312 2-110 (110)
79 cd04602 CBS_pair_IMPDH_2 This 99.2 1.2E-10 2.6E-15 95.6 12.1 107 166-311 3-113 (114)
80 cd04584 CBS_pair_ACT_assoc Thi 99.2 2.3E-10 5E-15 94.3 13.8 119 166-311 2-120 (121)
81 cd04599 CBS_pair_GGDEF_assoc2 99.2 2E-10 4.4E-15 92.2 13.1 102 166-310 2-103 (105)
82 cd04610 CBS_pair_ParBc_assoc T 99.2 1.9E-10 4.2E-15 92.7 12.7 105 165-311 2-106 (107)
83 cd04606 CBS_pair_Mg_transporte 99.2 1E-10 2.2E-15 95.1 11.1 103 170-313 2-109 (109)
84 cd04618 CBS_pair_5 The CBS dom 99.2 7.3E-11 1.6E-15 95.1 9.8 78 260-378 2-79 (98)
85 cd04634 CBS_pair_21 The CBS do 99.2 2.5E-10 5.4E-15 98.1 13.8 136 166-311 2-142 (143)
86 PRK11573 hypothetical protein; 99.2 4.7E-10 1E-14 113.3 17.7 166 152-367 184-349 (413)
87 cd02205 CBS_pair The CBS domai 99.2 3.3E-10 7.2E-15 90.8 13.5 111 166-311 2-112 (113)
88 cd04592 CBS_pair_EriC_assoc_eu 99.2 2.9E-10 6.2E-15 97.1 12.6 116 166-290 2-117 (133)
89 cd04601 CBS_pair_IMPDH This cd 99.2 1.5E-10 3.2E-15 93.7 10.4 106 166-311 3-109 (110)
90 TIGR01137 cysta_beta cystathio 99.2 3.5E-10 7.6E-15 115.7 15.5 127 147-313 327-453 (454)
91 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.5E-10 3.2E-15 110.1 11.9 113 155-305 155-268 (268)
92 cd04592 CBS_pair_EriC_assoc_eu 99.2 3.3E-10 7.2E-15 96.7 11.5 111 260-379 2-116 (133)
93 KOG1764 5'-AMP-activated prote 99.2 3.9E-10 8.5E-15 112.4 13.4 125 165-316 237-361 (381)
94 cd04598 CBS_pair_GGDEF_assoc T 99.2 8.2E-10 1.8E-14 90.8 13.1 113 166-311 2-118 (119)
95 cd04641 CBS_pair_28 The CBS do 99.1 5.8E-10 1.3E-14 92.3 11.5 102 259-378 1-102 (120)
96 PTZ00314 inosine-5'-monophosph 99.1 7E-10 1.5E-14 114.2 14.5 116 158-314 99-218 (495)
97 cd04638 CBS_pair_25 The CBS do 99.1 2.3E-09 5.1E-14 86.4 12.6 104 166-311 2-105 (106)
98 cd04627 CBS_pair_14 The CBS do 99.1 1.2E-09 2.5E-14 90.9 10.8 104 260-378 2-105 (123)
99 COG4109 Predicted transcriptio 99.0 2.2E-09 4.9E-14 102.7 12.0 125 154-319 187-311 (432)
100 cd04617 CBS_pair_4 The CBS dom 99.0 2.8E-09 6.1E-14 88.0 11.3 94 260-378 2-97 (118)
101 COG0517 FOG: CBS domain [Gener 99.0 3.7E-09 8.1E-14 86.4 11.6 96 257-379 5-101 (117)
102 cd04630 CBS_pair_17 The CBS do 99.0 5E-09 1.1E-13 85.8 11.5 96 260-378 2-97 (114)
103 cd04600 CBS_pair_HPP_assoc Thi 99.0 3.7E-09 8E-14 87.5 10.3 105 259-378 2-106 (124)
104 cd04619 CBS_pair_6 The CBS dom 99.0 7.6E-09 1.7E-13 84.8 11.0 95 261-379 3-97 (114)
105 PRK10892 D-arabinose 5-phospha 98.9 4.3E-09 9.2E-14 103.1 10.8 98 256-378 207-306 (326)
106 COG1253 TlyC Hemolysins and re 98.9 3.4E-08 7.4E-13 100.5 17.0 172 144-367 193-366 (429)
107 cd04623 CBS_pair_10 The CBS do 98.9 1.3E-08 2.8E-13 82.4 11.4 95 260-378 2-96 (113)
108 cd04603 CBS_pair_KefB_assoc Th 98.9 9.7E-09 2.1E-13 83.9 10.3 91 261-378 3-93 (111)
109 cd04605 CBS_pair_MET2_assoc Th 98.9 1.6E-08 3.4E-13 81.9 11.2 91 259-378 2-92 (110)
110 cd04633 CBS_pair_20 The CBS do 98.9 9.4E-09 2E-13 84.7 10.0 103 260-378 2-104 (121)
111 COG3620 Predicted transcriptio 98.9 4E-09 8.7E-14 90.5 7.0 92 255-371 69-160 (187)
112 cd04803 CBS_pair_15 The CBS do 98.9 1.9E-08 4.1E-13 83.0 10.6 103 260-378 2-104 (122)
113 PF00571 CBS: CBS domain CBS d 98.9 6.7E-09 1.4E-13 74.7 6.8 56 157-215 1-56 (57)
114 COG2905 Predicted signal-trans 98.9 6.6E-09 1.4E-13 105.1 8.9 98 256-378 154-251 (610)
115 cd04642 CBS_pair_29 The CBS do 98.9 1.8E-08 4E-13 84.1 10.3 105 260-378 2-108 (126)
116 cd04801 CBS_pair_M50_like This 98.9 2.7E-08 5.8E-13 81.3 10.8 94 260-378 2-96 (114)
117 cd04629 CBS_pair_16 The CBS do 98.9 1.8E-08 3.8E-13 82.1 9.7 96 260-378 2-97 (114)
118 cd04624 CBS_pair_11 The CBS do 98.9 3.4E-08 7.3E-13 80.2 11.2 93 260-378 2-94 (112)
119 cd04614 CBS_pair_1 The CBS dom 98.8 1.8E-08 3.9E-13 80.5 9.2 78 260-379 2-79 (96)
120 cd04607 CBS_pair_NTP_transfera 98.8 3.2E-08 6.9E-13 80.7 10.8 93 261-379 4-96 (113)
121 cd04621 CBS_pair_8 The CBS dom 98.8 3.1E-08 6.7E-13 84.3 10.9 113 260-378 2-118 (135)
122 cd04800 CBS_pair_CAP-ED_DUF294 98.8 4E-08 8.6E-13 79.6 11.0 93 260-378 2-94 (111)
123 PF00571 CBS: CBS domain CBS d 98.8 1.2E-08 2.6E-13 73.4 7.0 53 256-314 4-56 (57)
124 cd04593 CBS_pair_EriC_assoc_ba 98.8 4.4E-08 9.5E-13 80.1 11.2 94 260-378 2-95 (115)
125 cd04637 CBS_pair_24 The CBS do 98.8 2.3E-08 5.1E-13 82.6 9.6 103 260-378 2-104 (122)
126 cd04586 CBS_pair_BON_assoc Thi 98.8 2.3E-08 5E-13 84.5 9.7 112 259-378 2-118 (135)
127 cd04639 CBS_pair_26 The CBS do 98.8 3.3E-08 7.2E-13 80.1 10.2 92 260-378 2-93 (111)
128 cd04613 CBS_pair_SpoIVFB_EriC_ 98.8 3.3E-08 7.2E-13 80.2 10.1 94 260-378 2-95 (114)
129 cd04590 CBS_pair_CorC_HlyC_ass 98.8 4.3E-08 9.3E-13 79.5 10.5 92 260-378 2-93 (111)
130 cd04802 CBS_pair_3 The CBS dom 98.8 6.6E-08 1.4E-12 78.5 11.5 94 260-378 2-95 (112)
131 cd04643 CBS_pair_30 The CBS do 98.8 3.4E-08 7.3E-13 80.6 9.7 97 260-378 2-98 (116)
132 cd04587 CBS_pair_CAP-ED_DUF294 98.8 6.3E-08 1.4E-12 78.6 11.1 94 260-378 2-95 (113)
133 cd04595 CBS_pair_DHH_polyA_Pol 98.8 6.3E-08 1.4E-12 78.4 11.0 92 259-378 2-93 (110)
134 cd04588 CBS_pair_CAP-ED_DUF294 98.8 6.8E-08 1.5E-12 78.1 11.1 91 260-378 2-92 (110)
135 cd04631 CBS_pair_18 The CBS do 98.8 4.4E-08 9.6E-13 81.1 10.2 102 260-378 2-107 (125)
136 cd04582 CBS_pair_ABC_OpuCA_ass 98.8 5.3E-08 1.1E-12 78.3 10.3 87 260-378 2-88 (106)
137 cd04636 CBS_pair_23 The CBS do 98.8 4.5E-08 9.8E-13 82.4 10.3 108 260-378 2-115 (132)
138 PRK11543 gutQ D-arabinose 5-ph 98.8 3.2E-08 7E-13 96.7 10.8 97 256-378 202-300 (321)
139 cd04626 CBS_pair_13 The CBS do 98.8 7.1E-08 1.5E-12 78.3 10.6 93 260-378 2-94 (111)
140 cd04611 CBS_pair_PAS_GGDEF_DUF 98.8 9E-08 1.9E-12 77.3 10.9 92 260-378 2-93 (111)
141 cd04585 CBS_pair_ACT_assoc2 Th 98.8 7E-08 1.5E-12 79.1 10.4 103 260-378 2-104 (122)
142 cd04608 CBS_pair_PALP_assoc Th 98.8 3.4E-08 7.3E-13 82.8 8.5 95 259-378 2-105 (124)
143 cd04635 CBS_pair_22 The CBS do 98.8 4.8E-08 1E-12 80.5 9.2 103 260-378 2-104 (122)
144 cd04583 CBS_pair_ABC_OpuCA_ass 98.7 1.2E-07 2.5E-12 76.4 11.0 89 260-378 3-91 (109)
145 cd04625 CBS_pair_12 The CBS do 98.7 1.2E-07 2.6E-12 77.0 11.1 94 260-378 2-95 (112)
146 cd04615 CBS_pair_2 The CBS dom 98.7 1E-07 2.2E-12 77.4 10.7 94 260-378 2-95 (113)
147 COG2239 MgtE Mg/Co/Ni transpor 98.7 1.5E-07 3.3E-12 95.3 14.1 131 143-316 118-255 (451)
148 cd04632 CBS_pair_19 The CBS do 98.7 9.8E-08 2.1E-12 79.7 10.8 106 260-379 2-109 (128)
149 TIGR00393 kpsF KpsF/GutQ famil 98.7 5.1E-08 1.1E-12 92.6 10.2 97 256-378 160-257 (268)
150 cd04589 CBS_pair_CAP-ED_DUF294 98.7 1.4E-07 2.9E-12 76.6 11.3 93 260-378 2-94 (111)
151 cd04604 CBS_pair_KpsF_GutQ_ass 98.7 9.7E-08 2.1E-12 77.5 10.2 94 260-378 3-96 (114)
152 PRK07807 inosine 5-monophospha 98.7 1.7E-07 3.6E-12 96.2 13.7 140 189-378 43-185 (479)
153 cd04620 CBS_pair_7 The CBS dom 98.7 1.3E-07 2.9E-12 77.1 10.4 93 260-378 2-97 (115)
154 cd04634 CBS_pair_21 The CBS do 98.7 1.5E-07 3.2E-12 80.7 11.1 110 260-378 2-126 (143)
155 cd04612 CBS_pair_SpoIVFB_EriC_ 98.7 1.6E-07 3.5E-12 75.8 10.6 92 260-378 2-93 (111)
156 cd04622 CBS_pair_9 The CBS dom 98.7 2.3E-07 5.1E-12 75.2 11.0 93 260-378 2-95 (113)
157 cd02205 CBS_pair The CBS domai 98.7 2.8E-07 6E-12 73.6 11.0 94 260-378 2-95 (113)
158 cd02688 E_set E or "early" set 98.7 9.4E-08 2E-12 73.7 8.0 70 21-92 4-75 (83)
159 cd04596 CBS_pair_DRTGG_assoc T 98.7 1.3E-07 2.9E-12 76.4 9.0 89 260-379 3-91 (108)
160 cd04584 CBS_pair_ACT_assoc Thi 98.7 2.2E-07 4.8E-12 76.3 10.2 103 260-378 2-104 (121)
161 cd04599 CBS_pair_GGDEF_assoc2 98.6 2.3E-07 4.9E-12 74.3 9.3 87 260-378 2-88 (105)
162 cd02854 Glycogen_branching_enz 98.6 3.5E-07 7.5E-12 74.1 9.7 67 22-90 6-86 (99)
163 cd04640 CBS_pair_27 The CBS do 98.6 2.1E-07 4.5E-12 77.7 8.8 99 260-378 2-107 (126)
164 PRK05567 inosine 5'-monophosph 98.6 4.6E-07 9.9E-12 93.6 12.9 141 190-378 41-185 (486)
165 cd04591 CBS_pair_EriC_assoc_eu 98.6 4.8E-07 1E-11 73.4 10.5 84 260-378 3-88 (105)
166 TIGR01303 IMP_DH_rel_1 IMP deh 98.6 3.5E-07 7.6E-12 93.8 11.8 138 190-378 43-183 (475)
167 COG4536 CorB Putative Mg2+ and 98.6 9.1E-07 2E-11 85.9 13.8 131 153-318 198-328 (423)
168 PRK01862 putative voltage-gate 98.6 2E-07 4.3E-12 98.4 10.2 98 256-378 452-549 (574)
169 PRK07107 inosine 5-monophospha 98.6 2.1E-07 4.5E-12 96.1 9.2 91 262-378 108-200 (502)
170 cd04594 CBS_pair_EriC_assoc_ar 98.6 6E-07 1.3E-11 72.2 9.9 84 262-378 4-87 (104)
171 cd04609 CBS_pair_PALP_assoc2 T 98.5 6.2E-07 1.3E-11 72.1 9.7 91 260-378 2-92 (110)
172 PLN02274 inosine-5'-monophosph 98.5 3.6E-07 7.8E-12 94.4 10.1 95 257-378 106-202 (505)
173 cd04610 CBS_pair_ParBc_assoc T 98.5 9.4E-07 2E-11 70.9 10.0 88 259-378 2-89 (107)
174 cd04602 CBS_pair_IMPDH_2 This 98.5 9.3E-07 2E-11 72.2 9.6 92 260-378 3-96 (114)
175 PTZ00314 inosine-5'-monophosph 98.5 7E-07 1.5E-11 92.2 10.3 95 257-378 102-198 (495)
176 PRK15094 magnesium/cobalt effl 98.4 7.3E-07 1.6E-11 86.2 9.1 96 256-378 72-169 (292)
177 TIGR01302 IMP_dehydrog inosine 98.4 9.2E-07 2E-11 90.5 10.2 148 189-378 33-181 (450)
178 cd04601 CBS_pair_IMPDH This cd 98.4 1.1E-06 2.3E-11 70.8 8.1 91 259-379 2-93 (110)
179 cd04598 CBS_pair_GGDEF_assoc T 98.4 1.6E-06 3.5E-11 71.0 9.2 91 260-373 2-93 (119)
180 cd04606 CBS_pair_Mg_transporte 98.4 1.6E-06 3.4E-11 70.2 8.6 85 263-378 1-90 (109)
181 COG4535 CorC Putative Mg2+ and 98.4 2.2E-06 4.7E-11 78.4 10.2 129 153-318 65-193 (293)
182 PRK10070 glycine betaine trans 98.4 4.1E-06 8.9E-11 84.4 13.3 107 169-316 289-395 (400)
183 TIGR01186 proV glycine betaine 98.4 5.6E-06 1.2E-10 82.4 13.8 108 168-316 253-360 (363)
184 TIGR03520 GldE gliding motilit 98.4 1.7E-06 3.7E-11 87.4 9.9 94 256-378 196-291 (408)
185 PRK14869 putative manganese-de 98.3 2.8E-06 6.1E-11 89.1 11.1 54 256-315 73-126 (546)
186 KOG0474 Cl- channel CLC-7 and 98.3 1.6E-06 3.6E-11 88.7 8.8 150 150-313 577-746 (762)
187 PF02922 CBM_48: Carbohydrate- 98.3 5E-07 1.1E-11 70.6 3.2 58 21-79 11-73 (85)
188 TIGR01137 cysta_beta cystathio 98.3 4.9E-06 1.1E-10 85.2 11.0 91 256-371 340-430 (454)
189 cd04638 CBS_pair_25 The CBS do 98.2 1.6E-05 3.6E-10 63.7 10.9 88 260-378 2-89 (106)
190 TIGR00400 mgtE Mg2+ transporte 98.2 6.1E-06 1.3E-10 84.5 9.5 93 255-378 135-232 (449)
191 KOG2550 IMP dehydrogenase/GMP 98.0 1.5E-05 3.1E-10 78.3 7.5 108 166-312 117-226 (503)
192 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.3E-05 2.8E-10 66.0 5.7 54 155-211 58-111 (113)
193 COG0296 GlgB 1,4-alpha-glucan 97.7 0.00022 4.8E-09 74.9 11.5 138 20-164 35-188 (628)
194 smart00116 CBS Domain in cysta 97.7 0.00011 2.5E-09 49.1 6.2 47 261-313 2-48 (49)
195 cd05808 CBM20_alpha_amylase Al 97.7 0.00012 2.5E-09 58.5 7.1 53 22-76 2-63 (95)
196 PF00686 CBM_20: Starch bindin 97.7 8.3E-05 1.8E-09 59.7 6.1 56 21-76 2-68 (96)
197 smart00116 CBS Domain in cysta 97.7 0.00016 3.6E-09 48.2 6.1 47 167-214 2-48 (49)
198 cd04597 CBS_pair_DRTGG_assoc2 97.7 0.00012 2.6E-09 60.2 6.4 50 256-311 63-112 (113)
199 cd02855 Glycogen_branching_enz 97.6 0.00059 1.3E-08 55.2 9.3 67 23-90 23-96 (106)
200 cd02860 Pullulanase_N_term Pul 97.5 0.00034 7.4E-09 56.5 6.8 65 22-90 9-85 (100)
201 KOG0475 Cl- channel CLC-3 and 97.4 0.00094 2E-08 69.1 10.2 136 166-313 557-694 (696)
202 cd05818 CBM20_water_dikinase P 97.4 0.0015 3.2E-08 52.1 9.2 53 21-76 2-61 (92)
203 COG4109 Predicted transcriptio 97.3 0.00054 1.2E-08 66.4 7.2 89 259-378 198-286 (432)
204 cd05809 CBM20_beta_amylase Bet 97.3 0.0017 3.6E-08 52.5 8.8 57 20-76 2-68 (99)
205 cd05814 CBM20_Prei4 Prei4, N-t 97.3 0.001 2.2E-08 55.7 7.2 57 22-78 2-68 (120)
206 PRK12568 glycogen branching en 97.2 0.00087 1.9E-08 72.0 8.3 65 22-89 139-211 (730)
207 PLN02447 1,4-alpha-glucan-bran 97.2 0.00081 1.8E-08 72.4 8.0 64 22-88 115-192 (758)
208 PRK12313 glycogen branching en 97.2 0.00097 2.1E-08 71.3 8.2 66 22-89 39-111 (633)
209 PRK11573 hypothetical protein; 97.2 0.0022 4.7E-08 65.1 10.2 96 257-377 195-290 (413)
210 COG2239 MgtE Mg/Co/Ni transpor 97.1 0.0011 2.4E-08 67.5 7.6 96 253-379 134-234 (451)
211 cd05820 CBM20_novamyl Novamyl 97.1 0.0056 1.2E-07 49.8 9.9 54 21-76 3-70 (103)
212 cd02856 Glycogen_debranching_e 97.1 0.0017 3.8E-08 52.7 6.8 53 23-79 11-67 (103)
213 cd05813 CBM20_genethonin_1 Gen 97.1 0.002 4.4E-08 51.4 7.1 54 21-76 1-62 (95)
214 cd05816 CBM20_DPE2_repeat2 Dis 96.9 0.0089 1.9E-07 48.2 9.6 52 23-76 2-64 (99)
215 PRK14705 glycogen branching en 96.9 0.0017 3.8E-08 73.2 7.3 63 22-86 639-709 (1224)
216 PRK14706 glycogen branching en 96.9 0.002 4.3E-08 68.8 7.4 65 22-89 39-111 (639)
217 cd05811 CBM20_glucoamylase Glu 96.9 0.0053 1.1E-07 50.0 7.9 59 18-76 4-73 (106)
218 cd05817 CBM20_DSP Dual-specifi 96.8 0.0045 9.7E-08 50.1 7.2 45 30-76 12-62 (100)
219 PRK05402 glycogen branching en 96.8 0.0029 6.3E-08 68.7 7.9 58 22-80 132-194 (726)
220 COG1253 TlyC Hemolysins and re 96.7 0.011 2.5E-07 60.2 10.9 91 257-374 214-304 (429)
221 TIGR01186 proV glycine betaine 96.7 0.012 2.6E-07 58.7 10.5 90 259-379 250-339 (363)
222 cd05467 CBM20 The family 20 ca 96.7 0.0086 1.9E-07 47.5 7.4 46 30-76 12-65 (96)
223 cd05810 CBM20_alpha_MTH Glucan 96.6 0.017 3.7E-07 46.4 8.7 54 21-76 1-64 (97)
224 cd02853 MTHase_N_term Maltooli 96.5 0.012 2.6E-07 45.9 7.0 61 23-89 10-72 (85)
225 cd05807 CBM20_CGTase CGTase, C 96.4 0.022 4.7E-07 46.1 8.6 57 20-76 2-70 (101)
226 TIGR02402 trehalose_TreZ malto 96.2 0.012 2.7E-07 61.7 7.4 61 23-90 1-64 (542)
227 PRK10070 glycine betaine trans 96.1 0.028 6E-07 56.8 9.4 85 263-378 289-373 (400)
228 cd02852 Isoamylase_N_term Isoa 96.1 0.015 3.2E-07 48.4 5.9 59 23-83 9-75 (119)
229 TIGR03415 ABC_choXWV_ATP choli 96.0 0.025 5.4E-07 56.8 8.5 109 154-315 273-381 (382)
230 COG4535 CorC Putative Mg2+ and 96.0 0.028 6.1E-07 52.0 7.8 91 256-373 74-164 (293)
231 TIGR01515 branching_enzym alph 95.9 0.02 4.2E-07 61.2 7.2 66 22-89 29-102 (613)
232 KOG2550 IMP dehydrogenase/GMP 95.8 0.06 1.3E-06 53.5 9.4 151 183-378 55-208 (503)
233 PRK05402 glycogen branching en 95.6 0.018 4E-07 62.6 5.8 60 23-85 30-94 (726)
234 PF11806 DUF3327: Domain of un 95.6 0.1 2.3E-06 43.8 9.1 87 21-109 2-118 (122)
235 PLN02316 synthase/transferase 95.4 0.047 1E-06 61.0 8.2 82 2-83 137-226 (1036)
236 cd05815 CBM20_DPE2_repeat1 Dis 95.4 0.043 9.4E-07 44.2 5.9 54 23-76 2-65 (101)
237 cd05806 CBM20_laforin Laforin 95.0 0.29 6.3E-06 40.4 9.7 50 27-76 11-74 (112)
238 KOG0474 Cl- channel CLC-7 and 94.9 0.048 1E-06 56.8 6.0 123 255-378 586-727 (762)
239 COG4175 ProV ABC-type proline/ 94.5 0.076 1.6E-06 51.6 5.8 111 155-315 274-384 (386)
240 TIGR02104 pulA_typeI pullulana 94.0 0.14 3E-06 54.6 7.3 64 23-89 21-94 (605)
241 PF03423 CBM_25: Carbohydrate 93.9 0.081 1.8E-06 41.6 4.0 61 22-82 3-76 (87)
242 PLN02950 4-alpha-glucanotransf 92.6 1.2 2.6E-05 49.7 12.0 71 16-88 148-234 (909)
243 PLN02950 4-alpha-glucanotransf 92.3 1 2.3E-05 50.2 11.0 60 17-76 5-74 (909)
244 PRK10439 enterobactin/ferric e 92.0 0.95 2.1E-05 46.0 9.6 89 17-107 35-165 (411)
245 KOG0476 Cl- channel CLC-2 and 91.8 3.4 7.3E-05 44.5 13.3 59 155-215 588-647 (931)
246 TIGR02100 glgX_debranch glycog 90.5 0.64 1.4E-05 50.4 6.9 55 22-80 15-75 (688)
247 PLN02316 synthase/transferase 90.3 1.1 2.3E-05 50.6 8.5 58 21-78 329-398 (1036)
248 PLN02960 alpha-amylase 90.1 0.48 1E-05 52.0 5.6 54 22-77 130-198 (897)
249 TIGR02102 pullulan_Gpos pullul 90.0 0.77 1.7E-05 52.1 7.2 64 23-88 329-407 (1111)
250 COG1125 OpuBA ABC-type proline 90.0 10 0.00022 36.2 13.5 135 136-312 169-308 (309)
251 KOG0475 Cl- channel CLC-3 and 90.0 2.7 5.8E-05 44.3 10.5 115 260-379 557-677 (696)
252 TIGR02103 pullul_strch alpha-1 88.1 2.3 5E-05 47.3 9.1 66 22-89 136-215 (898)
253 TIGR03415 ABC_choXWV_ATP choli 87.9 0.91 2E-05 45.7 5.4 47 166-215 334-380 (382)
254 COG4536 CorB Putative Mg2+ and 87.4 1.4 3.1E-05 43.6 6.2 92 257-373 208-299 (423)
255 PRK03705 glycogen debranching 85.8 1.7 3.7E-05 46.8 6.5 55 22-80 20-78 (658)
256 KOG0476 Cl- channel CLC-2 and 84.2 1.5 3.1E-05 47.2 4.8 59 256-318 593-651 (931)
257 COG1125 OpuBA ABC-type proline 81.7 2.1 4.6E-05 40.7 4.4 40 173-213 269-308 (309)
258 cd02857 CD_pullulan_degrading_ 79.2 6.7 0.00014 31.7 6.3 56 21-76 16-79 (116)
259 KOG0470 1,4-alpha-glucan branc 75.2 2.3 4.9E-05 45.7 2.8 40 23-64 115-157 (757)
260 PRK14510 putative bifunctional 74.8 10 0.00022 44.0 8.2 56 21-80 23-84 (1221)
261 PF01357 Pollen_allerg_1: Poll 74.2 11 0.00024 29.1 5.9 62 17-83 10-77 (82)
262 PF02903 Alpha-amylase_N: Alph 72.6 5.9 0.00013 32.7 4.3 68 9-76 7-87 (120)
263 COG3794 PetE Plastocyanin [Ene 69.3 17 0.00037 30.8 6.3 49 20-73 61-111 (128)
264 PLN02877 alpha-amylase/limit d 68.7 22 0.00047 40.1 8.7 52 22-77 223-280 (970)
265 PLN03244 alpha-amylase; Provis 68.6 7.7 0.00017 42.4 5.0 47 20-68 131-185 (872)
266 COG4175 ProV ABC-type proline/ 65.6 11 0.00023 37.1 4.9 49 165-215 335-383 (386)
267 KOG2118 Predicted membrane pro 57.5 23 0.00049 37.0 6.0 134 145-314 194-328 (498)
268 PRK11388 DNA-binding transcrip 54.4 65 0.0014 34.6 9.1 101 176-305 61-162 (638)
269 PRK10785 maltodextrin glucosid 53.0 53 0.0012 35.1 8.1 71 9-79 6-87 (598)
270 KOG1263 Multicopper oxidases [ 52.8 9.7 0.00021 40.3 2.4 64 42-110 84-152 (563)
271 TIGR02375 pseudoazurin pseudoa 47.5 76 0.0016 26.3 6.5 49 20-73 22-71 (116)
272 PF03370 CBM_21: Putative phos 45.0 75 0.0016 26.0 6.1 65 20-84 20-104 (113)
273 TIGR03503 conserved hypothetic 43.2 54 0.0012 32.9 5.8 42 35-79 152-195 (374)
274 PF13473 Cupredoxin_1: Cupredo 37.0 35 0.00076 27.2 2.9 16 57-72 74-90 (104)
275 PF11896 DUF3416: Domain of un 36.1 74 0.0016 28.7 5.1 40 41-83 55-99 (187)
276 KOG0045 Cytosolic Ca2+-depende 33.5 38 0.00083 36.3 3.3 26 66-91 115-143 (612)
277 PF14347 DUF4399: Domain of un 31.7 91 0.002 24.4 4.3 31 56-87 50-80 (87)
278 TIGR03102 halo_cynanin halocya 30.6 2.3E+02 0.005 23.4 6.8 48 21-73 50-99 (115)
279 cd02958 UAS UAS family; UAS is 28.8 75 0.0016 25.5 3.6 66 149-216 37-109 (114)
280 TIGR02657 amicyanin amicyanin. 25.9 1.9E+02 0.0041 21.9 5.2 48 22-73 20-69 (83)
281 PRK03972 ribosomal biogenesis 25.6 1.6E+02 0.0035 27.0 5.5 55 147-205 13-67 (208)
282 PF07495 Y_Y_Y: Y_Y_Y domain; 24.9 59 0.0013 23.2 2.1 23 62-84 33-58 (66)
283 COG3397 Uncharacterized protei 24.8 6.2E+02 0.013 24.6 9.2 32 20-53 113-150 (308)
284 PRK00446 cyaY frataxin-like pr 22.4 74 0.0016 25.9 2.4 26 56-85 57-82 (105)
285 cd00503 Frataxin Frataxin is a 22.4 55 0.0012 26.6 1.6 17 68-85 67-83 (105)
286 PF01491 Frataxin_Cyay: Fratax 22.3 84 0.0018 25.6 2.7 19 66-85 67-86 (109)
287 PF00127 Copper-bind: Copper b 22.1 1.5E+02 0.0034 23.2 4.2 18 21-38 25-43 (99)
288 PRK10301 hypothetical protein; 21.5 4E+02 0.0087 22.2 6.7 47 32-79 61-113 (124)
289 PF08308 PEGA: PEGA domain; I 20.7 3E+02 0.0065 19.8 5.3 41 23-78 4-45 (71)
290 PLN03023 Expansin-like B1; Pro 20.6 3.2E+02 0.0069 25.9 6.5 55 17-77 158-216 (247)
291 TIGR03009 plancto_dom_2 Planct 20.3 92 0.002 28.7 2.8 16 75-90 67-85 (210)
292 TIGR03422 mito_frataxin fratax 20.1 75 0.0016 25.5 1.9 18 67-85 66-83 (97)
No 1
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.94 E-value=6.3e-26 Score=209.99 Aligned_cols=166 Identities=17% Similarity=0.311 Sum_probs=142.0
Q ss_pred CccccccccccCCCCCCCHHHHH-----HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeee
Q 016718 120 NMEVDDVVMRPEGFAQYSEADLQ-----LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW 194 (384)
Q Consensus 120 ~~dl~~~~~~~~~~~~~s~~~~e-----~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~ 194 (384)
..|+++++++++|..||+++|+| +++++++|.++..+|.|+| |+.|+++.+++++.+|.++|.+|+++++||.
T Consensus 205 ~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~ 282 (382)
T COG3448 205 SEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVL 282 (382)
T ss_pred HHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccc
Confidence 68999999999999999999997 7899999999999999999 8899999999999999999999999999999
Q ss_pred eCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHH
Q 016718 195 DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVA 274 (384)
Q Consensus 195 D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~ 274 (384)
|+ ..+++||||++||+.... . ++ ....+.+. .++...+|+.++.|+.|+++..+++
T Consensus 283 d~-~~rl~GiVt~~dl~~~a~---~--~p--------------~qrlr~~~----~~~vk~imt~~v~tv~pdtpa~~lv 338 (382)
T COG3448 283 DE-HRRLVGIVTQRDLLKHAR---P--SP--------------FQRLRFLR----PPTVKGIMTTPVVTVRPDTPAVELV 338 (382)
T ss_pred cc-ccceeeeeeHHHHhhccC---c--ch--------------HHHhhccC----CCcccccccCcceeecCCCcHHHHH
Confidence 96 689999999999964211 1 11 11111111 1112236999999999999999999
Q ss_pred HHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhc
Q 016718 275 LKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 317 (384)
Q Consensus 275 ~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~ 317 (384)
.+|.+.+.|++||+|. .| +++|||||+|++.+++++.
T Consensus 339 p~lad~g~H~lpvld~---~g---~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 339 PRLADEGLHALPVLDA---AG---KLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred HHhhcCCcceeeEEcC---CC---cEEEEeeHHHHHHHHHHHH
Confidence 9999999999999983 47 9999999999999999764
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.91 E-value=1.5e-24 Score=168.58 Aligned_cols=79 Identities=46% Similarity=0.944 Sum_probs=73.8
Q ss_pred eeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeeeE
Q 016718 20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (384)
Q Consensus 20 ~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nNv 99 (384)
.++|+|+|++++++|+|+|||+||++.+||.+.. ++ |++++.||||.|+|||+|||+|.+|+++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 3799999999999999999999999878999864 34 99999999999999999999999999999999999999999
Q ss_pred EE
Q 016718 100 YI 101 (384)
Q Consensus 100 i~ 101 (384)
|+
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.89 E-value=1.6e-22 Score=200.58 Aligned_cols=213 Identities=30% Similarity=0.514 Sum_probs=176.1
Q ss_pred HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718 143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 222 (384)
Q Consensus 143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~ 222 (384)
.....+.+|+..++||+++|++.++++++..+++.+|+.+|..++++++||||....+++|++|..||+.++...+....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~ 133 (381)
T KOG1764|consen 54 NAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS 133 (381)
T ss_pred chhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC
Confidence 45668999999999999999999999999999999999999999999999999988999999999999999887765311
Q ss_pred CC-ChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEE
Q 016718 223 NL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL 301 (384)
Q Consensus 223 ~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lv 301 (384)
.. ..+.++...+..+++.....+ . ...++++++.|..++.+++..++++++||+||+|. +.| .++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~--~~~---~v~ 199 (381)
T KOG1764|consen 134 SLDNIEVLEDSQLSKRREVECLLK-------E--TLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDP--ETG---EVL 199 (381)
T ss_pred cHHHHhhhhhhhccccchhhhhhc-------c--ccCCCceeecCcHHHHHHHHHHHhCCccceeeecc--ccc---cee
Confidence 11 112222222222333211111 0 12455599999999999999999999999999983 446 899
Q ss_pred EEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 302 YLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 302 Giit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
+++|++.|++++..+.+.++ ..+++++++.++.+|+|. .+.++.+++|+.+|+++|.++++|++||+-
T Consensus 200 ~ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~ 267 (381)
T KOG1764|consen 200 YILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVD 267 (381)
T ss_pred eehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence 99999999999998877665 367999999999999995 799999999999999999999999999973
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=2.9e-18 Score=134.27 Aligned_cols=77 Identities=38% Similarity=0.748 Sum_probs=69.2
Q ss_pred eEEEEEeeCC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEee-cCCCCCe-eeCCCCCee
Q 016718 21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN 97 (384)
Q Consensus 21 ~~v~f~w~~~-~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~-~d~~~p~-~~d~~G~~n 97 (384)
++++|+|.++ +++|+|+|+|++|+ ..+|++.+ +|.|++++.|++|.|+|||+|||.|. +||.++. ..|..|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5799999885 59999999999998 47999864 69999999999999999999999998 9999986 668899999
Q ss_pred eEE
Q 016718 98 CVY 100 (384)
Q Consensus 98 Nvi 100 (384)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 5
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.75 E-value=1.1e-17 Score=152.85 Aligned_cols=121 Identities=18% Similarity=0.291 Sum_probs=105.5
Q ss_pred ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (384)
Q Consensus 155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i 234 (384)
.++.++| +.+++++++++||++|.++|++++|+++||+|. ++++|++|.+|+..++.++... .
T Consensus 172 ~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~---~---------- 234 (294)
T COG2524 172 EKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLD---A---------- 234 (294)
T ss_pred chhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCcc---c----------
Confidence 5688899 889999999999999999999999999999994 4999999999999888754211 0
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~ 314 (384)
.+.+ +|++.++++..|+.+.||+++|.++++.||.|+|+ +| +.+||||.+|||+.++
T Consensus 235 -kV~~----------------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g---kpvGiITrTDIL~~ia 291 (294)
T COG2524 235 -KVSD----------------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG---KPVGIITRTDILTRIA 291 (294)
T ss_pred -cHHH----------------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC---cEEEEEehHHHHHHhh
Confidence 1122 47899999999999999999999999999999984 36 8999999999999987
Q ss_pred h
Q 016718 315 R 315 (384)
Q Consensus 315 ~ 315 (384)
.
T Consensus 292 ~ 292 (294)
T COG2524 292 G 292 (294)
T ss_pred c
Confidence 3
No 6
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=6.1e-16 Score=124.83 Aligned_cols=97 Identities=43% Similarity=0.706 Sum_probs=85.4
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++|+.+|++.|.++++.++||+|+++++++|+||..|++++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 688999999999999999999999999999645799999999998521
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+. ++++.|+++|.+|+++|.+++++++||+|+ ++| +++|+||.+|++++
T Consensus 50 -----------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~~ 98 (98)
T cd04618 50 -----------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILKF 98 (98)
T ss_pred -----------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhcC
Confidence 11 678999999999999999999999999984 226 89999999999863
No 7
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.4e-16 Score=150.96 Aligned_cols=89 Identities=37% Similarity=0.740 Sum_probs=81.6
Q ss_pred CCceeEEEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCEeecCCCCCeeeCCCCCe
Q 016718 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVV 96 (384)
Q Consensus 17 ~~~~~~v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~ 96 (384)
.....+++|+|..+++.|+|+|+|.||+..++|.+.....|.|++++.|++|.|+|||+|||+|.+|++.|++.|..|++
T Consensus 76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~ 155 (289)
T KOG1616|consen 76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL 155 (289)
T ss_pred cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence 34578999999999999999999999999999988765556699999999999999999999999999999999999999
Q ss_pred eeEEEeccCC
Q 016718 97 NCVYIAVPQP 106 (384)
Q Consensus 97 nNvi~v~~~~ 106 (384)
||+++| .+.
T Consensus 156 ~N~i~v-~~~ 164 (289)
T KOG1616|consen 156 NNILEV-QDP 164 (289)
T ss_pred ccceEe-cCc
Confidence 999999 543
No 8
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.4e-14 Score=117.89 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=92.0
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|++.|.++++..+||+|+ .++++|++|..|++.++....... .. . ...+.+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~-~~--~--------~~~~~~~~~- 68 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNN-LD--L--------TVGEALERR- 68 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcccc-cc--C--------CHHHHHhhc-
Confidence 4678999999999999999999999999995 789999999999987543211100 00 0 011111000
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
..|..++.++.+++++.+|+++|.+++++++||+|+ +| +++|+||++|++++
T Consensus 69 ---------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~~~Givt~~di~~~ 120 (120)
T cd04641 69 ---------SQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NK---RVEGIISLSDILQF 120 (120)
T ss_pred ---------ccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CC---CEEEEEEHHHhhcC
Confidence 035678899999999999999999999999999983 36 89999999999864
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.58 E-value=1.7e-14 Score=134.49 Aligned_cols=154 Identities=15% Similarity=0.211 Sum_probs=113.7
Q ss_pred CeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHH-HhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHH
Q 016718 199 GRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK-LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKI 277 (384)
Q Consensus 199 ~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m 277 (384)
++-+| +|.+|+-.+|.++..- -.++.+|++.+--......+ ++.++..| +.+|+++++++++++++.+|.++|
T Consensus 198 ~~rvg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~~~Ltc----adIMSrdVvtv~~~ts~dhA~~ll 271 (382)
T COG3448 198 SQRVG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRMGELTC----ADIMSRDVVTVSTDTSIDHARKLL 271 (382)
T ss_pred hhccC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHhccccH----HHhcCccceecCCcCChHHHHHHH
Confidence 46678 8999999999876543 24567888765322222222 22222222 347999999999999999999999
Q ss_pred HhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCC
Q 016718 278 LQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 357 (384)
Q Consensus 278 ~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d 357 (384)
.+|+++.+||+|+ +. +|+||+||+|+++..-.. .+ |++..+. .++++.+|+.++.|+.+|
T Consensus 272 ~~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~~---------p~-qrlr~~~----~~~vk~imt~~v~tv~pd 331 (382)
T COG3448 272 QEHRIKALPVLDE---HR---RLVGIVTQRDLLKHARPS---------PF-QRLRFLR----PPTVKGIMTTPVVTVRPD 331 (382)
T ss_pred HHcCccccccccc---cc---ceeeeeeHHHHhhccCcc---------hH-HHhhccC----CCcccccccCcceeecCC
Confidence 9999999999983 34 899999999998853211 11 1111111 124667889999999999
Q ss_pred CCHHHHHHHHHhCCCceeeec
Q 016718 358 ASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 358 ~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|..+++.++.+.+..++||+
T Consensus 332 tpa~~lvp~lad~g~H~lpvl 352 (382)
T COG3448 332 TPAVELVPRLADEGLHALPVL 352 (382)
T ss_pred CcHHHHHHHhhcCCcceeeEE
Confidence 999999999999999999996
No 10
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.2e-13 Score=115.71 Aligned_cols=125 Identities=27% Similarity=0.399 Sum_probs=92.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|++.|.++++..+||+|+ .++++|++|..|+++......... .. ......+....+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~-~~--------~~~~~~~~~~~~~ 71 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLL-LY--------RTITFKELSEKFT 71 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhh-cc--------cchhhhhhhhhcc
Confidence 5789999999999999999999999999996 589999999999987543111000 00 0000000000000
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
. ....|..+++++.+++++.+|+++|.+++++++||+|+ +| +++|+||.+||+++
T Consensus 72 -----~-~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dil~~ 126 (126)
T cd04642 72 -----D-SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EG---KPIGVITLTDIISI 126 (126)
T ss_pred -----c-ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CC---CEEEEEEHHHHhcC
Confidence 0 00135778999999999999999999999999999983 36 89999999999874
No 11
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=1.5e-13 Score=112.67 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=88.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.+++...+||+|. .++++|+||..|+++... . +....+ +.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~----~-------~~~~~~---v~~------ 60 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP----N-------DYETLK---VCE------ 60 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc----c-------cccccC---hhh------
Confidence 4678999999999999999999999999995 689999999999975311 0 000000 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.+|+.+|.+++.+++||+|+ +| +++|+||.+|++++
T Consensus 61 ----------~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~---~~~Giit~~di~~~ 111 (111)
T cd04603 61 ----------VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EG---KLVGTIYERELLRF 111 (111)
T ss_pred ----------eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---eEEEEEEhHHhhcC
Confidence 35677889999999999999999999999999983 36 89999999999863
No 12
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.50 E-value=2.4e-13 Score=116.24 Aligned_cols=122 Identities=16% Similarity=0.345 Sum_probs=98.4
Q ss_pred hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (384)
Q Consensus 154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (384)
..+|..+| ++.++.+.+++++.+|+++|.++|++-+||+++ +++||-||+.|+.+.+.+.. +++..++
T Consensus 64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~~ 131 (187)
T COG3620 64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSLR 131 (187)
T ss_pred eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhhh
Confidence 57899999 889999999999999999999999999999984 79999999999998775431 2222221
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
. ++ +|..+|.+|+++.+|...-.+|-.| ..+.|++ +| +++||||..||++++
T Consensus 132 v---r~----------------vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e----~G---~~vGIITk~DI~k~~ 183 (187)
T COG3620 132 V---RE----------------VMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE----NG---KVVGIITKADIMKLL 183 (187)
T ss_pred H---HH----------------HhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe----CC---ceEEEEeHHHHHHHH
Confidence 1 22 4788999999999997666666544 5677776 36 899999999999998
Q ss_pred Hh
Q 016718 314 CR 315 (384)
Q Consensus 314 ~~ 315 (384)
..
T Consensus 184 ~~ 185 (187)
T COG3620 184 AG 185 (187)
T ss_pred hc
Confidence 63
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=5.9e-13 Score=109.49 Aligned_cols=112 Identities=26% Similarity=0.409 Sum_probs=90.7
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.++.+++|+.+|++.|.+++...+||+|+ .++++|++|..|+++.+........ .. ...+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~--------~~---~v~~------ 63 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGC--------TA---PVEN------ 63 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCcc--------cC---CHHH------
Confidence 5778999999999999999999999999995 6899999999999875542110000 00 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|.++++++.+++++.+|+..|.+++.+++||+|+ +| +++|+||.+|+++
T Consensus 64 ----------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~ 113 (114)
T cd04619 64 ----------VMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK 113 (114)
T ss_pred ----------HhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence 24678899999999999999999999999999983 36 8999999999975
No 14
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=3e-13 Score=132.50 Aligned_cols=124 Identities=11% Similarity=0.156 Sum_probs=99.6
Q ss_pred hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (384)
Q Consensus 153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~ 232 (384)
...++.|+|.+..+++++.+++|+.+|++.|.++++..+||+|+ +|+++|+||.+|+.+++.... .. ...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~----~~-----~~~ 269 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI----DL-----RQA 269 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC----Cc-----ccC
Confidence 45578999954347899999999999999999999988888885 689999999999876443110 00 000
Q ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+ ..+ +|+++++++.+++++.+|+.+|.+++++++||+|+ | +++||||.+||+++
T Consensus 270 ~---v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----~---~lvGiit~~dil~~ 323 (326)
T PRK10892 270 S---IAD----------------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG----D---HLLGVLHMHDLLRA 323 (326)
T ss_pred C---HHH----------------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC----C---EEEEEEEhHHhHhc
Confidence 0 111 36889999999999999999999999999999973 6 89999999999975
No 15
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.49 E-value=8.8e-13 Score=127.20 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=125.3
Q ss_pred HHHHHHh--hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718 145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 222 (384)
Q Consensus 145 ~~~~~~~--l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~ 222 (384)
...+... |+..++.++|..-.++++++.++|+.++++.+.+++.+.+||++.+.++++|+|+..|++..+... . .
T Consensus 55 ~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~--~-~ 131 (292)
T PRK15094 55 RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD--A-E 131 (292)
T ss_pred HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc--C-C
Confidence 3344444 467799999966558999999999999999999999999999986447999999999998644210 0 0
Q ss_pred CCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718 223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (384)
Q Consensus 223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG 302 (384)
.. .+.+ +|+ +++++.+++++.+++..|.+++.|.+||+|. .| .++|
T Consensus 132 ~~-----------~l~~----------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viG 177 (292)
T PRK15094 132 AF-----------SMDK----------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSG 177 (292)
T ss_pred cC-----------CHHH----------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEE
Confidence 00 0121 134 4558999999999999999999999999983 36 7999
Q ss_pred EeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718 303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (384)
Q Consensus 303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m 367 (384)
|||..||++.+......... ..-...+..+.- ..+.+...+++.+..+.+
T Consensus 178 iVTleDIle~ivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 178 LVTIEDILELIVGEIEDEYD--EEDDIDFRQLSR-------------HTWTVRALASIEDFNEAF 227 (292)
T ss_pred EeEHHHHHHHHhCCCccccc--cccccccEEeCC-------------CeEEEEeccCHHHHHHHh
Confidence 99999999999875433211 000111222222 345788889998888876
No 16
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.48 E-value=1.1e-12 Score=132.29 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=126.5
Q ss_pred HHHHHHh--hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 016718 145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 222 (384)
Q Consensus 145 ~~~~~~~--l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~ 222 (384)
.+-+... |++.+|.|+|..-.++++++.++|+.++++.+.+++.+.+||++++.++++|||+..|++..+.. .
T Consensus 179 ~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-----~ 253 (408)
T TIGR03520 179 QKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-----K 253 (408)
T ss_pred HHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-----C
Confidence 3344444 46889999997767899999999999999999999999999998756799999999999754321 0
Q ss_pred CCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEE
Q 016718 223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (384)
Q Consensus 223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvG 302 (384)
.. . +.+. | +++++|++++++.++++.|.+++.|.++|+|+ .| .++|
T Consensus 254 ~~--------~---l~~~----------------~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~G 299 (408)
T TIGR03520 254 NF--------D---WQSL----------------L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSG 299 (408)
T ss_pred CC--------C---HHHH----------------c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEE
Confidence 00 0 1111 3 45789999999999999999999999999983 46 6999
Q ss_pred EeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718 303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (384)
Q Consensus 303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m 367 (384)
|||.+||++.+......... .-...+..+. .....++..+++.++.+.|
T Consensus 300 iVT~eDileeivgei~de~d---~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 300 LVTLEDIIEEIVGDISDEFD---DEDLIYSKID-------------DNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred EEEHHHHHHHHhCCCCCcCC---cCccceEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence 99999999999765432110 0111222222 2345788889999988888
No 17
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.2e-12 Score=108.27 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=89.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|++.|.++++..+||+|. .++++|+||..|+++....... +...++ .+
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~---------~~~~~~---~~------ 62 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGAD---------LQKVPV---GV------ 62 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCC---------ccCCCH---HH------
Confidence 4678999999999999999999999999995 6899999999999876532110 000011 11
Q ss_pred cccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCC--CCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA--GSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~--g~~~~lvGiit~~dil~ 311 (384)
+|. .++.++.+++++.+|+++|.+++++++||+|+ ++ | +++|+||++|+++
T Consensus 63 ----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~--~~~~~---~l~Gvit~~~l~~ 117 (118)
T cd04617 63 ----------IMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK--VDEGL---EVIGRITKTNITK 117 (118)
T ss_pred ----------HhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC--CCccc---eEEEEEEhhheec
Confidence 134 36889999999999999999999999999984 21 5 8999999999875
No 18
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2e-12 Score=106.06 Aligned_cols=113 Identities=18% Similarity=0.280 Sum_probs=90.5
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.++++..+||.|.+.++++|++|..|+++.+........ ..+ ..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~--------~~~---v~~------ 64 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPD--------RVN---VYE------ 64 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCC--------ccC---HHH------
Confidence 467899999999999999999999999999522899999999999876543111100 000 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|.+++.++.+++++.+|+.+|.+++.+.+||+| + | +++|+||..|++++
T Consensus 65 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~-~---~~~Gvi~~~dl~~~ 114 (114)
T cd04630 65 ----------IMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE---N-N---ELIGIISLTDIFLA 114 (114)
T ss_pred ----------HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee---C-C---EEEEEEEHHHhhcC
Confidence 2467889999999999999999999999999997 3 6 89999999999863
No 19
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=9.8e-13 Score=105.41 Aligned_cols=95 Identities=23% Similarity=0.395 Sum_probs=83.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
.++++.+++++.+|++.|.++++..+||+|+ .++++|++|..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~-------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK-------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence 4678999999999999999999999999995 6899999999998420
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
..+.++.+++++.+|+++|.+++++++||+|+ +| +++|+||.+|++++
T Consensus 49 -------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~---~~~Giit~~di~~~ 96 (96)
T cd04614 49 -------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---ND---KLIGLLRDHDLLKP 96 (96)
T ss_pred -------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CC---cEEEEEEHHHhhcC
Confidence 11678999999999999999999999999983 36 89999999999863
No 20
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.8e-12 Score=107.98 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=89.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
.++++..++++.+|++.|.++++..+||+|++.++++|++|..|+++.+....... .. .+. . .+... .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~-~~--~~~--~----~~~~~-~-- 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF-PG--LDP--L----YPIPL-R-- 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc-cc--hhh--h----hhhhh-h--
Confidence 35688999999999999999999999999963389999999999987654321110 00 000 0 00000 0
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil 310 (384)
....|..++.++.+++++.+|+++|.+++++++||+|+ +| +++|+||.+|+-
T Consensus 70 -------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~vGiit~~di~ 121 (123)
T cd04627 70 -------DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QG---NLIGNISVTDVR 121 (123)
T ss_pred -------hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CC---cEEEEEeHHHhh
Confidence 00136788999999999999999999999999999984 36 899999999973
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=1.1e-12 Score=128.20 Aligned_cols=123 Identities=17% Similarity=0.247 Sum_probs=100.7
Q ss_pred hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (384)
Q Consensus 154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (384)
..++.++|-++..++++.+++|+.+|++.|.+++...+||+|+ +++++|+||..|+.+.+..... . .
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~----~-----~--- 262 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGA----L-----T--- 262 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCC----c-----C---
Confidence 6789999955434889999999999999999999999999995 6899999999999765532100 0 0
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
....+ +|+++++++.+++++.+|+..|.++++.++||+|+ +| +++|+||..|++++
T Consensus 263 -~~v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGvIt~~di~~~ 318 (321)
T PRK11543 263 -TPVNE----------------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE---NG---KLTGAINLQDFYQA 318 (321)
T ss_pred -CcHHH----------------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHhc
Confidence 00112 36788999999999999999999999999999983 36 89999999999975
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.6e-12 Score=107.87 Aligned_cols=124 Identities=17% Similarity=0.285 Sum_probs=92.4
Q ss_pred CCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (384)
Q Consensus 164 s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (384)
+.+++++++++++.+|++.|.++++..+||+|. .++++|+|+..|++..+...... .......... .+.
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~~-~~~--- 69 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRR------PLRGRLRGRD-KPE--- 69 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccc------hhhhhhhccc-ccc---
Confidence 356789999999999999999999999999985 58999999999997654311100 0000000000 000
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
....+|.+.++++.+++++.+|+++|.+++.+++||+|+ +| +++|+||.+|++++
T Consensus 70 --------~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvit~~di~~~ 124 (124)
T cd04600 70 --------TVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DR---RLVGIVTQTDLIAA 124 (124)
T ss_pred --------cHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CC---CEEEEEEhHHhhcC
Confidence 000136778999999999999999999999999999983 36 89999999999863
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.43 E-value=1.1e-12 Score=131.92 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=103.6
Q ss_pred ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (384)
Q Consensus 155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i 234 (384)
.++.+++ ..+.+++++.+|+.+|.+.|.++|++++.++|. ++...||||++|+...+..-++. .
T Consensus 149 trv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~---------- 212 (610)
T COG2905 149 TRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---K---------- 212 (610)
T ss_pred HHHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---c----------
Confidence 4678888 567889999999999999999999999999984 78999999999998766432221 0
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~ 314 (384)
.. ...++|+.|+++|.+.+.+.||+.+|.+++|+|+||.+ +| +++||||.+||++...
T Consensus 213 ---~~------------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~g---q~~Gilt~~dIl~l~s 270 (610)
T COG2905 213 ---TQ------------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DG---QPLGILTLTDILRLFS 270 (610)
T ss_pred ---cc------------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CC---eeeEEeeHHHHHHhhC
Confidence 00 01125899999999999999999999999999999996 37 8999999999999876
Q ss_pred hh
Q 016718 315 RH 316 (384)
Q Consensus 315 ~~ 316 (384)
.+
T Consensus 271 ~~ 272 (610)
T COG2905 271 QN 272 (610)
T ss_pred CC
Confidence 43
No 24
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.42 E-value=1.8e-12 Score=132.33 Aligned_cols=169 Identities=15% Similarity=0.213 Sum_probs=130.8
Q ss_pred HHHHHHHhh--hhccccccCCCCCcEEEEecCccHHHHHHHHHH-----cCCCeeeeeeCCCCeEEEEeehHHHHHHHHH
Q 016718 144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (384)
Q Consensus 144 ~~~~~~~~l--~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~-----~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~ 216 (384)
++..++..+ ...++.++| +.++++++.+.|+.+|++.|.+ +++..+||+|+ .++++|+|+.+|++..
T Consensus 118 er~~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a--- 191 (449)
T TIGR00400 118 ERKAINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA--- 191 (449)
T ss_pred HHHHHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC---
Confidence 344455555 478999999 5689999999999999999986 67788999985 6899999999998631
Q ss_pred hccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCC
Q 016718 217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS 296 (384)
Q Consensus 217 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~ 296 (384)
... . ...+ +|+++++++++++++.+|++.|.++++..+||+|+ +|
T Consensus 192 ---~~~----~--------~v~~----------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~---~g- 236 (449)
T TIGR00400 192 ---KPE----E--------ILSS----------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN---EG- 236 (449)
T ss_pred ---CCC----C--------cHHH----------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC---CC-
Confidence 100 0 0122 25677899999999999999999999999999983 46
Q ss_pred cccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceee
Q 016718 297 CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQ 376 (384)
Q Consensus 297 ~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lP 376 (384)
+++|+||.+|+++.+.....+ +++ +...++..+++.+.+++..|.++++..++
T Consensus 237 --~lvGiIt~~Dil~~l~~~~~e------------------d~~-------~~~gv~~~~~~~l~~~~~~~~~~R~~wL~ 289 (449)
T TIGR00400 237 --RLVGIVTVDDIIDVIQSEATE------------------DFY-------MIAAVKPLDDSYFDTSILVMAKNRIIWLL 289 (449)
T ss_pred --eEEEEEEHHHHHHHHHhhhHH------------------HHH-------HhcCCCCCcchhhhchHHHHHHhccchHH
Confidence 899999999999998764321 111 11233444678889999999999999998
Q ss_pred eccc
Q 016718 377 QPAI 380 (384)
Q Consensus 377 V~~~ 380 (384)
|.++
T Consensus 290 v~~~ 293 (449)
T TIGR00400 290 VLLV 293 (449)
T ss_pred HHHH
Confidence 8754
No 25
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=5.5e-12 Score=128.96 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=103.5
Q ss_pred HHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChh
Q 016718 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE 227 (384)
Q Consensus 148 ~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~ 227 (384)
..+.++..++.++| ..+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+... ...
T Consensus 82 q~~~l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~----~~~------- 147 (479)
T PRK07807 82 VAEVVAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV----DRF------- 147 (479)
T ss_pred HHHHHhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC----ccC-------
Confidence 34445567788998 567889999999999999999999999999995 6899999999998311 000
Q ss_pred hhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHH
Q 016718 228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 307 (384)
Q Consensus 228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~ 307 (384)
..+.+ +|+.+++++.+++++.+|+.+|.+++++++||+|+ +| +++|+||.+
T Consensus 148 -------~~V~d----------------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~ 198 (479)
T PRK07807 148 -------TQVRD----------------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRT 198 (479)
T ss_pred -------CCHHH----------------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHH
Confidence 01122 36789999999999999999999999999999983 36 899999999
Q ss_pred HHHHHHHhh
Q 016718 308 DILKCICRH 316 (384)
Q Consensus 308 dil~~l~~~ 316 (384)
||++.....
T Consensus 199 DIl~~~~~~ 207 (479)
T PRK07807 199 GALRATIYT 207 (479)
T ss_pred HHHHHhhCC
Confidence 999987643
No 26
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=4.3e-12 Score=103.81 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=88.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+.++++.++++.+|++.|.+++...+||.|+ +++++|++|..|+++.+...... .. ...+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~~---------~~----~v~~------ 62 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLSL---------DD----PVSE------ 62 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCCc---------CC----CHHH------
Confidence 4568899999999999999999999999985 68999999999997654321100 00 0112
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.+|+.+|.+++.+++||+|+ +| +++|+||.+||+.
T Consensus 63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 112 (113)
T cd04607 63 ----------VMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EG---RVVGLATLDDLLS 112 (113)
T ss_pred ----------hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEhHHhcc
Confidence 24667889999999999999999999999999983 36 8999999999874
No 27
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.41 E-value=6.7e-13 Score=121.78 Aligned_cols=96 Identities=18% Similarity=0.329 Sum_probs=83.9
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (384)
.|+++++++.|++||.+|+++|.+++++..||+|+ + +++|++|.+||.+++++. . ++
T Consensus 177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g--~-------~~------- 233 (294)
T COG2524 177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG--N-------LD------- 233 (294)
T ss_pred hccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC--C-------cc-------
Confidence 58999999999999999999999999999999983 4 799999999999999863 1 11
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
.+|.+.|+++++|+..|+.++||+++|..+++++|-|+-
T Consensus 234 -----~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 234 -----AKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred -----ccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 133445679999999999999999999999999998863
No 28
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=6.2e-12 Score=102.23 Aligned_cols=112 Identities=21% Similarity=0.376 Sum_probs=90.4
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++++++++.++.+|.+.|.+++...+||.|+ .++++|+++..|+++.+........ ..+ ..+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~--------~~~---~~~------ 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASAL--------DTP---VSE------ 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCcc--------ccC---HHH------
Confidence 4678899999999999999999999999995 5899999999999876543211000 000 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.++++.|.+++.+++||++ + | +++|+||.+|++++
T Consensus 64 ----------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~~ 113 (113)
T cd04623 64 ----------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD---G-G---KLVGIVSIGDVVKA 113 (113)
T ss_pred ----------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe---C-C---EEEEEEEHHHhhcC
Confidence 2567889999999999999999999999999997 2 6 89999999999864
No 29
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.41 E-value=1.6e-12 Score=109.18 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=89.6
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+....... .. ...+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~-~~-----------~v~~------ 63 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQP-SD-----------PVSK------ 63 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCC-CC-----------cHHH------
Confidence 4678999999999999999999999999995 689999999999987654321110 00 1122
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHH---------hcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL---------QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~---------~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
+|++++.++.+++++.+++++|. +.+.+++||+|+ +| +++||||.+|+++++
T Consensus 64 ----------im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~Givt~~Dl~~~~ 124 (124)
T cd04608 64 ----------ALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QE---KPIGIVTKIDLLSYI 124 (124)
T ss_pred ----------HhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---cc---ceEEEEehhHhhhhC
Confidence 36788999999999999999653 346888999973 36 899999999999874
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.40 E-value=6.3e-12 Score=103.15 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=89.8
Q ss_pred EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhcc
Q 016718 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 246 (384)
Q Consensus 167 vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 246 (384)
+.++++++++.+|.+.|.+++...+||.|+ .++++|+++..|+...+...... .. ..+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~-~~-----------~~~~~------- 62 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAG-EP-----------SAVDE------- 62 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccc-cc-----------ccHHH-------
Confidence 457899999999999999999999999995 68999999999998755321100 00 00111
Q ss_pred ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 247 ~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.+|+.+|.+++.+++||+|+ .+.| +++|+||.+||+++
T Consensus 63 ---------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~---~~~Gvit~~di~~~ 115 (115)
T cd04593 63 ---------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPG---QVLGLLTRENVLLA 115 (115)
T ss_pred ---------hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCC---eEEEEEEhHHhhcC
Confidence 24677899999999999999999999999999984 1125 79999999999863
No 31
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.39 E-value=4.3e-12 Score=133.45 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=106.2
Q ss_pred HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhh
Q 016718 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228 (384)
Q Consensus 149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~ 228 (384)
++.++..++.|+| +.+.+++++++++.+|.+.|.+++...+||+|+ +++++|+||..|+.+.+......
T Consensus 441 ~~~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~-------- 509 (574)
T PRK01862 441 RERLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRDT-------- 509 (574)
T ss_pred hhHHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhccccc--------
Confidence 4567888999999 556778999999999999999999999999995 68999999999998654321100
Q ss_pred hhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (384)
Q Consensus 229 l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d 308 (384)
... ...+ +|.++++++++++++.+|+++|.+++++++||+|+ ++.+ +++|+||++|
T Consensus 510 -~~~---~v~d----------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~-~~~~---~liGvIt~~D 565 (574)
T PRK01862 510 -TDK---TAAD----------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVES-EASP---TLAGVVYKTS 565 (574)
T ss_pred -ccc---hHHH----------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC-CCCC---eEEEEEEHHH
Confidence 000 0111 35778899999999999999999999999999984 1224 7999999999
Q ss_pred HHHHHHh
Q 016718 309 ILKCICR 315 (384)
Q Consensus 309 il~~l~~ 315 (384)
+++++.+
T Consensus 566 Il~~l~~ 572 (574)
T PRK01862 566 LLDAYRR 572 (574)
T ss_pred HHHHHHh
Confidence 9999865
No 32
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=1.3e-11 Score=100.23 Aligned_cols=108 Identities=19% Similarity=0.385 Sum_probs=89.7
Q ss_pred CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
.+++++.++.++.+|++.|.+++...+||.|+ .++++|++|..|+++.+.... . .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~---~-------------~~~~----- 59 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK---K-------------SVED----- 59 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc---c-------------CHHH-----
Confidence 46778999999999999999999999999985 689999999999976543210 0 0111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|.+++.++.+++++.+|++.|.+++.+.+||++. +| +++|+||..|+++
T Consensus 60 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~v~~~di~~ 109 (110)
T cd04605 60 -----------IMTRNVITATPDEPIDVAARKMERHNISALPVVDA---EN---RVIGIITSEDISK 109 (110)
T ss_pred -----------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CC---cEEEEEEHHHhhh
Confidence 24567889999999999999999999999999983 36 8999999999975
No 33
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=3.8e-12 Score=107.87 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=92.1
Q ss_pred CCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH--HHH-HHH
Q 016718 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI--SAW-KVG 240 (384)
Q Consensus 164 s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i--~~~-~~~ 240 (384)
|.+++++++++++.+|++.|.++++..+||+|+ .++++|+++..|+++.+...... .. .+...... ... ...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTER--RR--ARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcc--hh--hhHHHHhcchHHHHHHH
Confidence 356789999999999999999999999999995 68999999999998654321100 00 00000000 000 000
Q ss_pred HHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 241 ~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
... . . .....+|..++.++.+++++.+|+..|.+++.+++||+| .| +++|+||..|++++
T Consensus 76 ~~~-~--~--~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g---~~~Gvit~~di~~~ 135 (135)
T cd04586 76 VRS-H--G--RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GG---RLVGIVSRADLLRA 135 (135)
T ss_pred HHh-c--C--CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CC---EEEEEEEhHhhhcC
Confidence 000 0 0 000013567889999999999999999999999999997 26 89999999999863
No 34
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=8.7e-12 Score=104.42 Aligned_cols=126 Identities=20% Similarity=0.343 Sum_probs=91.1
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhc-cCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
+++++.+++++.+|+++|.++++..+||+|+ .++++|++|..|+.+.+.... .+.............-....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVY------ 74 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHH------
Confidence 4568899999999999999999999999995 589999999999987653211 00000000000000000001
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
.+|..+++++.+++++.+|+..|.+.+.+.+||++.+ ++| +++|+||.+|++++
T Consensus 75 ----------~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~~ 128 (128)
T cd04632 75 ----------DAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLRA 128 (128)
T ss_pred ----------HHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhcC
Confidence 1367889999999999999999999999999999521 236 89999999999863
No 35
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=7.1e-12 Score=106.85 Aligned_cols=130 Identities=16% Similarity=0.277 Sum_probs=90.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++..++++.+|++.|.+++...+||+|+ .++++|++|..|+++.+...... ..... .+.+ .+......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~---~~~~---~~~~~~~~ 72 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKK---SIKM---KRKAGQKR 72 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchh---hhhh---hhhccccc
Confidence 3568899999999999999999999999995 68999999999998765321100 00000 0000 00000000
Q ss_pred cc--cccC-CCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LK--RQMD-GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~--~~~~-~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.+ .... ....+|..++.++.+++++.+|+..|.+++.+++||++ + | +++|+||++|+++
T Consensus 73 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---~-~---~~~Gvit~~di~~ 134 (135)
T cd04621 73 YRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD---N-D---NIVGVITKTDICR 134 (135)
T ss_pred ccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe---C-C---EEEEEEEHHHHhh
Confidence 00 0000 00114677889999999999999999999999999997 2 6 8999999999986
No 36
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.38 E-value=1.3e-11 Score=100.32 Aligned_cols=109 Identities=19% Similarity=0.311 Sum_probs=88.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.++++..+||+|.+.++++|++|..|+++.+.... . . . .+..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-~------~----~---~~~~------ 61 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-E------D----L---DLRD------ 61 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-C------c----C---CHHH------
Confidence 57899999999999999999999999999953289999999999987653210 0 0 0 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+| +++.++.+++++.+|++.|.+++.+++||+|+ +| +++|+||.+|+++
T Consensus 62 ----------~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 110 (111)
T cd04590 62 ----------LL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE 110 (111)
T ss_pred ----------Hh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence 12 46789999999999999999999999999983 36 8999999999975
No 37
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=8.8e-12 Score=101.38 Aligned_cols=109 Identities=22% Similarity=0.327 Sum_probs=89.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+.+++++++++.+|.+.|.+.+...+||+|. .++++|+++..|+++.+...... ..+.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~--------------~~v~~------ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPD--------------APVRG------ 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCC--------------CcHHH------
Confidence 4567899999999999999999999999995 68999999999998765421110 01122
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.+|++.|.+++.+++||+|+ +| +++|++|.+|+.+
T Consensus 61 ----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~ 110 (111)
T cd04639 61 ----------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SG---RLVGLVTLENVGE 110 (111)
T ss_pred ----------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CC---CEEEEEEHHHhhc
Confidence 24567889999999999999999999999999973 36 8999999999976
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.1e-11 Score=101.53 Aligned_cols=115 Identities=19% Similarity=0.308 Sum_probs=87.6
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++++++.++++.+|++.|.++++..+||+|+ .++++|+++..|+++.+..... .++....-....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~-------~~~~~~~~~~v~~------ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN-------LDLERLVDLKVID------ 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc-------hhHHHHhCCcHHH------
Confidence 5789999999999999999999999999995 6899999999999865532110 0100000000111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.+|+.+|.+++ .+||+|+ +| +++|+||..|++++
T Consensus 68 ----------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~---~~~Gvit~~dil~~ 116 (116)
T cd04643 68 ----------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DG---IFIGIITRREILKA 116 (116)
T ss_pred ----------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CC---eEEEEEEHHHhhcC
Confidence 35678899999999999999998865 5999983 36 89999999999864
No 39
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=101.28 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=89.4
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|.+.|.++++..+||+|+ .++++|+|+..|+++.+......... .. ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~-------~~---~v~~------ 64 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDG-------VA---TVRD------ 64 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCC-------Cc---cHHH------
Confidence 4678999999999999999999999999985 68999999999998755321100000 00 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.+|+..|.+++.+++||+| + | +++|+||..|++++
T Consensus 65 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~~ 114 (114)
T cd04629 65 ----------IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD---D-G---KLVGQISRRDVLRA 114 (114)
T ss_pred ----------HhccCceEECCCCcHHHHHHHHHHhCCCccCEEE---C-C---EEEEEEEHHHHhcC
Confidence 2456788999999999999999999999999998 2 6 89999999999863
No 40
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.3e-11 Score=100.42 Aligned_cols=109 Identities=13% Similarity=0.222 Sum_probs=88.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.+++.++++.+|++.|.++++..+||+|+ .++++|+++..|++....... .. .. ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~------~~---~v~~------ 61 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FL------EK---KVFN------ 61 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cc------cC---cHHH------
Confidence 4678999999999999999999999999985 689999999999976432110 00 00 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|.+++.++.+++++.+|+..|.+++.+++||+| + | +++|+||..|+++
T Consensus 62 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~di~~ 110 (111)
T cd04626 62 ----------IVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD---D-N---KLIGVVRTKDILD 110 (111)
T ss_pred ----------HhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEhHHhcc
Confidence 2467889999999999999999999999999997 3 6 8999999999874
No 41
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=8e-12 Score=102.39 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=85.7
Q ss_pred cEEEEecCccHHHHHHHHHHcC-CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~-i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
++.++.+++++.+|++.|.+++ ...+||+|. .++++|++|..|++......... . .+.+.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~-~-------------~v~~~---- 62 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWAQ-T-------------TVIQV---- 62 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhccc-c-------------chhhh----
Confidence 4568899999999999998775 899999995 68999999999997654311100 0 01122
Q ss_pred ccccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 245 NLKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 245 ~~~~~~~~~~~~m~--~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
|. .++.++.+++++.+|++.|.+++.+++||+|+ +| +++|+||..||++
T Consensus 63 ------------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~ 113 (114)
T cd04801 63 ------------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR 113 (114)
T ss_pred ------------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence 22 34668999999999999999999999999983 36 8999999999875
No 42
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.36 E-value=2.1e-11 Score=99.31 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=88.6
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+.+++..+.++.+|.+.|.+++...+||.|+ ++++|+++..|++..+...... . + ....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~--~---~-------~~i~~------ 61 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP--S---S-------TPVGE------ 61 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC--C---C-------CCHHH------
Confidence 4568899999999999999999999999984 7899999999998654321000 0 0 00111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.+++++|.+++.+.+||+|+ | +++|+||..|+++|
T Consensus 62 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~dl~~~ 111 (111)
T cd04589 62 ----------IATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG----G---EVVGVLEQTDLLSF 111 (111)
T ss_pred ----------HhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC----C---EEEEEEEhHHhhcC
Confidence 24678899999999999999999999999999972 6 89999999999875
No 43
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.35 E-value=1e-11 Score=100.11 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=86.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++++++++.++.+|++.|.+++...+||.|+ .|+++|++|..|+++... .. ..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~------~~-------------~~~------ 55 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG------GC-------------CGD------ 55 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc------cc-------------hhh------
Confidence 4568899999999999999999999999985 689999999999974310 00 011
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|......+.+++++.+|+++|.++++..+||+|+ +| +++|+||.+++++
T Consensus 56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~ 105 (106)
T cd04582 56 ----------HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIAD 105 (106)
T ss_pred ----------hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 24566778999999999999999999999999983 36 8999999999986
No 44
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.4e-11 Score=103.98 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=91.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.+++...+||+|+ .++++|+++..|++..+............... .... .+....+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 76 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSV---IFLD-ESKIKKLL 76 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccc---cccc-hHHHHHHc
Confidence 3568899999999999999999999999995 68999999999998766432111000000000 0000 00000000
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
... ...+|.+++..+.+++++.+++.+|.+++.+++||+| + | +++|++|..|+++|
T Consensus 77 ~~~----v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~iGvit~~dl~~~ 132 (132)
T cd04636 77 GKK----VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD---D-G---KLVGIISRGDIIRS 132 (132)
T ss_pred CCC----HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE---C-C---EEEEEEEHHHhhcC
Confidence 000 0113567889999999999999999999999999998 3 6 89999999999874
No 45
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.8e-11 Score=101.34 Aligned_cols=120 Identities=18% Similarity=0.323 Sum_probs=90.9
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCCh-hhhhhhhHHHHHHHHHhh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQL 244 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~~ 244 (384)
+++++++++++.+|++.|.++++..+||+|. .++++|++|..|++..+...... ...+. .......+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v---~~----- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSD-NGEESLTKERDVPV---AE----- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhcccccc-ccccccccccCcCH---HH-----
Confidence 4678999999999999999999999999985 58999999999998755321111 00000 00000001 11
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..+++++.+++++.+++++|.+++.+.+||+|+ +| +++|++|..|++++
T Consensus 72 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~~ 122 (122)
T cd04803 72 -----------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLRL 122 (122)
T ss_pred -----------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhcC
Confidence 25678899999999999999999999999999983 36 89999999999864
No 46
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.34 E-value=4.5e-11 Score=122.20 Aligned_cols=124 Identities=11% Similarity=0.122 Sum_probs=100.8
Q ss_pred HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhh
Q 016718 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228 (384)
Q Consensus 149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~ 228 (384)
.+.++..+.+++| ..+++++.+++++.+|+++|.++++..+||+|. ++++|+||.+|+... .. .
T Consensus 82 ae~v~~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-----~~---~---- 145 (475)
T TIGR01303 82 KQTVAFVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-----DR---F---- 145 (475)
T ss_pred HHHHhhcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-----CC---C----
Confidence 3344567788888 557789999999999999999999999999984 689999999998311 00 0
Q ss_pred hhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (384)
Q Consensus 229 l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d 308 (384)
..+.+ +|+.+++++.+++++.+|+.+|.+++++++||+|+ +| +++|+||.+|
T Consensus 146 ------~~V~d----------------IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g---~LvGIIT~~D 197 (475)
T TIGR01303 146 ------TQVRD----------------IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG---TLAGILTRTG 197 (475)
T ss_pred ------CCHHH----------------HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHH
Confidence 01122 36789999999999999999999999999999983 36 8999999999
Q ss_pred HHHHHHhh
Q 016718 309 ILKCICRH 316 (384)
Q Consensus 309 il~~l~~~ 316 (384)
|++.....
T Consensus 198 Ll~~~~~~ 205 (475)
T TIGR01303 198 ALRATIYT 205 (475)
T ss_pred HHHHHhCC
Confidence 99987643
No 47
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.9e-11 Score=98.24 Aligned_cols=108 Identities=22% Similarity=0.367 Sum_probs=88.3
Q ss_pred CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
+++++++.+.++.+|.+.|.+++...+||.|. ++++|+|+..|++..+.... . .. ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-~--~~-----------~~~~----- 60 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-G--HA-----------PVKD----- 60 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-c--cC-----------cHHH-----
Confidence 35778999999999999999999999999994 89999999999976542110 0 00 0112
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..+++++.+++++.+|+.+|.+++.+.+||+| +| +++|+||..|+++
T Consensus 61 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~---~~~Gvvt~~di~~ 109 (110)
T cd04595 61 -----------YMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DG---RLVGIVTRTDLLR 109 (110)
T ss_pred -----------HhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CC---EEEEEEEhHHhhc
Confidence 2466788999999999999999999999999997 26 8999999999975
No 48
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.7e-11 Score=101.90 Aligned_cols=122 Identities=20% Similarity=0.362 Sum_probs=90.9
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCC-CCC-hhhhhhhhHHHHHHHHHh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS-NLT-EEELETHTISAWKVGKLQ 243 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~-~~~-~~~l~~~~i~~~~~~~~~ 243 (384)
+++++.++.++.+|.+.|.+++...+||+|.+.++++|+|+..|++..+........ ... ..+.... ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINE---PVRS---- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhc---CHHH----
Confidence 467889999999999999999999999999633899999999999876542110000 000 0000000 0011
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..+++++.+++++.+++..|.+++.+.+||+|+ +| +++|+||..||+++
T Consensus 75 ------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~~ 125 (125)
T cd04631 75 ------------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLKA 125 (125)
T ss_pred ------------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhcC
Confidence 24677899999999999999999999999999973 36 89999999999874
No 49
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.34 E-value=8.4e-11 Score=121.20 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=96.1
Q ss_pred ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHH
Q 016718 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA 236 (384)
Q Consensus 157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~ 236 (384)
+.++| ..++++++++.++.+|.++|.++++..+||+|+ .++++|+||.+|+.... .. .. .
T Consensus 89 ~~dim--~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~~--~~-----------~ 148 (486)
T PRK05567 89 SESGV--VTDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----DL--SQ-----------P 148 (486)
T ss_pred hhhcc--cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----cC--CC-----------c
Confidence 55677 568899999999999999999999999999995 78999999999985311 00 00 1
Q ss_pred HHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718 237 WKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (384)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~ 314 (384)
..+ +|. ++++++.+++++.+|+.+|.+++++.+||+|. +| +++|+||.+||++.+.
T Consensus 149 V~d----------------im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g---~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 149 VSE----------------VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NG---RLKGLITVKDIEKAEE 205 (486)
T ss_pred HHH----------------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEhHHhhhhhh
Confidence 122 245 78999999999999999999999999999983 46 8999999999999874
No 50
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.34 E-value=1.5e-11 Score=100.06 Aligned_cols=112 Identities=24% Similarity=0.339 Sum_probs=89.5
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|.++|.++++..+||+|. .++++|+++..|+.+.+.... ..+..++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~---------~~~~~~v---~~------ 62 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPS---------LYDLVVA---SD------ 62 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhccc---------ccccEEH---HH------
Confidence 4678999999999999999999999999995 589999999999976543110 0000011 11
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|.+++.++.+++++.+++..|.+.+.+++||+|+ +.| +++|++|..|+++
T Consensus 63 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--~~~---~~~Gvvt~~di~~ 113 (114)
T cd04613 63 ----------IMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD--DPG---KLLGILSRSDLLS 113 (114)
T ss_pred ----------hccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC--CCC---EEEEEEEhHHhhc
Confidence 25677899999999999999999999999999972 135 8999999999986
No 51
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=4.2e-11 Score=99.14 Aligned_cols=121 Identities=17% Similarity=0.355 Sum_probs=91.5
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.++.++.+|.+.|.++++..+||+|+ ++++|++|..|+.+.+....... .....++. .+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~-- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA-GETEKDLA-----TLNRRAHQ-- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc-cchHHHHH-----HHHhHHHH--
Confidence 4678999999999999999999999999994 89999999999987654322110 00000100 00000111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..+++++.+++++.+++..|.+++...+||+|+ +| +++|++|..|++++
T Consensus 72 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----------IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY 122 (122)
T ss_pred ----------hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence 25678899999999999999999999999999973 35 89999999999874
No 52
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=3.2e-11 Score=98.19 Aligned_cols=110 Identities=18% Similarity=0.292 Sum_probs=89.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.++..++++.+|.+.|.+++...+||.|. .++++|++|..|++..+...... .. ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~~--~~-----------~v~~------ 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGIDL--DT-----------PVSE------ 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCCC--cc-----------CHHH------
Confidence 4568899999999999999999999999995 58999999999998755421100 00 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.+++..|.++++..+||+++ +| +++|++|.+|+++
T Consensus 62 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gilt~~dl~~ 111 (112)
T cd04624 62 ----------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GG---ELVGVISIRDLVR 111 (112)
T ss_pred ----------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CC---cEEEEEEHHHhcc
Confidence 24677899999999999999999999999999983 36 8999999999975
No 53
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.33 E-value=2.6e-11 Score=98.67 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=87.1
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (384)
.+..+++++++.+|.+.|.+++...+||+|+. .++++|+|+..|+...... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-----------------------~--- 56 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-----------------------Y--- 56 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-----------------------h---
Confidence 46788999999999999999999999999953 4899999999998643210 1
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
|.+++.++.+++++.+++.+|.+++++.+||++ +| +++|+||..|++++
T Consensus 57 -------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~---~~~Gvvt~~dl~~~ 105 (105)
T cd04591 57 -------------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EG---RLVGIITRKDLLKA 105 (105)
T ss_pred -------------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEhhhhhcC
Confidence 466788999999999999999999999999996 26 89999999999864
No 54
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.6e-11 Score=98.07 Aligned_cols=110 Identities=22% Similarity=0.419 Sum_probs=88.3
Q ss_pred EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhcc
Q 016718 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 246 (384)
Q Consensus 167 vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 246 (384)
..++.+++++.+|++.|.++++..+||+|. .++++|++|..|+...+.... .+....+ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~---------~~~~~~i---~~------- 62 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE---------ELKDAKV---RE------- 62 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh---------hhcCCcH---HH-------
Confidence 568899999999999999999999999995 689999999999976432110 0000001 11
Q ss_pred ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 247 ~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.+++..|.+++.+++||+|+ +| +++|++|..|+++
T Consensus 63 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvvt~~dl~~ 112 (113)
T cd04615 63 ---------VMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KG---KVGGIVTEDDILR 112 (113)
T ss_pred ---------hccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEEHHHhhc
Confidence 25677899999999999999999999999999983 36 8999999999975
No 55
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=4.7e-11 Score=97.23 Aligned_cols=111 Identities=20% Similarity=0.349 Sum_probs=86.7
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
.+.++.+++++.+|.+.|.+++...++|.+ .++++|++|..|+++.+...... . ...+ ..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~---~-----~~~~---v~~------ 62 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHGAG---V-----LDTT---VRA------ 62 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcCCc---h-----hcCC---HHH------
Confidence 356889999999999999999987777765 48999999999998765421100 0 0000 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|..++.++.+++++.+|+.+|.+++..++||+|+ | +++|+||.+|++++
T Consensus 63 ----------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~----~---~~~Gvvt~~dl~~~ 112 (112)
T cd04625 63 ----------IMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG----G---TLLGVISFHDVAKA 112 (112)
T ss_pred ----------HhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC----C---EEEEEEEHHHhhcC
Confidence 24567889999999999999999999999999972 6 89999999999863
No 56
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.9e-11 Score=99.88 Aligned_cols=120 Identities=20% Similarity=0.390 Sum_probs=89.9
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|.+.|.++++..+||+|. ++++|++|..|++..+...... .. .......+.+. .+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~~--~~- 69 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPL--VR-----DRHQERRIRNL--PV- 69 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhc--cc-----chhhhhhhhcc--CH-
Confidence 4578999999999999999999999999994 8999999999998755421110 00 00000000000 00
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
..+|..++.++.+++++.+++.+|.+++.+++||+| + | +++|+||.+|++++
T Consensus 70 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvi~~~dl~~~ 121 (121)
T cd04633 70 --------SDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD---D-G---KLVGIVTRTDILRY 121 (121)
T ss_pred --------HHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEE---C-C---EEEEEEEHHHhhcC
Confidence 013567889999999999999999999999999998 3 6 89999999999864
No 57
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=3.6e-11 Score=98.53 Aligned_cols=110 Identities=16% Similarity=0.280 Sum_probs=85.5
Q ss_pred cEEEEecCccHHHHHHHHHHcC-CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~-i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
++++++.+.++.+|.+.|.+++ ...+||.| .++++|+||..|+++.+.... .. ... .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~----~~-----~~~---~i~~----- 62 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK----DL-----SDL---PIGE----- 62 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC----Cc-----ccc---CHHH-----
Confidence 4568899999999999999888 66777777 379999999999987553210 00 000 0111
Q ss_pred ccccccCCCCCCCCCCceEeCCC--CCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPY--DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~--~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|..+++++.++ +++.+|+.+|.+++.+.+||+|+ +| +++|+||.+|+++
T Consensus 63 -----------~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Gvit~~dl~~ 114 (115)
T cd04620 63 -----------VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QG---QLIGLVTAESIRQ 114 (115)
T ss_pred -----------hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CC---CEEEEEEhHHhhc
Confidence 246778889887 79999999999999999999983 36 8999999999986
No 58
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.32 E-value=4e-11 Score=97.24 Aligned_cols=110 Identities=22% Similarity=0.397 Sum_probs=88.7
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+.+++++++++.+|++.|.+.++..+||.|. ++++|+++..|+........ . +. .. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-----~--~~---~~---~~~------ 60 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR-----E--AT---VL---VGD------ 60 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc-----c--cc---cC---HHH------
Confidence 4678999999999999999999999999994 89999999999976442110 0 00 00 011
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
.|..++.++.+++++.+++..|.+++.+++||+|+ +| +++|+||..||+++
T Consensus 61 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~~ 111 (111)
T cd04612 61 ----------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SG---RLVGIVSRSDLLRA 111 (111)
T ss_pred ----------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CC---CEEEEEEHHHhhhC
Confidence 25678899999999999999999999999999973 36 89999999999863
No 59
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.4e-11 Score=98.66 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=87.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|.+.|.+++...+||+|+ .++++|+++..|++... .. . .+.+.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~~------~--------~v~~~----- 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD----PD------T--------TIEKV----- 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc----cc------c--------cHHHH-----
Confidence 4678999999999999999999999999995 68999999999985310 00 0 01221
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
|..++.++.+++++.+++++|.+++.+.+||+|+ +| +++|++|..|+++
T Consensus 59 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~di~~ 107 (108)
T cd04596 59 -----------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NK---KLLGIISRQDVLK 107 (108)
T ss_pred -----------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---CEEEEEEHHHhhc
Confidence 4567889999999999999999999999999983 46 8999999999986
No 60
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.31 E-value=4.8e-11 Score=97.68 Aligned_cols=110 Identities=26% Similarity=0.488 Sum_probs=90.6
Q ss_pred CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
..++++.++.++.+|+.+|.++++..+||.+. .+++|++|.+|+++++........ ...+
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~-------------~v~~----- 66 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL-------------PVKE----- 66 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc-------------cHHH-----
Confidence 57889999999999999999999999999984 489999999999887653321100 0011
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHh-cCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-NKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~-~~i~~lPVvd~~~~~g~~~~lvGiit~~dil 310 (384)
+|+++++++.++.++.++++.|.+ ++++++||++. +++ +++|++|.+|++
T Consensus 67 -----------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~ 117 (117)
T COG0517 67 -----------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL 117 (117)
T ss_pred -----------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence 367789999999999999999999 79999999984 224 699999999974
No 61
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.31 E-value=5.5e-11 Score=96.49 Aligned_cols=108 Identities=17% Similarity=0.272 Sum_probs=88.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|.+.|.+++++.+||.|. ++++|+++..|+++....... . ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~----~----------~~v~~------ 59 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE----L----------AKVKD------ 59 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc----c----------cCHHH------
Confidence 4678999999999999999999999999984 799999999999865432100 0 01122
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.++++.|.+++.+.+||+++ +| +++|+||..|+++
T Consensus 60 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~ 109 (110)
T cd04588 60 ----------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EG---RPVGIITRTDILR 109 (110)
T ss_pred ----------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEEhHHhhc
Confidence 24578899999999999999999999999999973 36 8999999999975
No 62
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.31 E-value=4.7e-11 Score=97.24 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=87.9
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.+++...+||.|. ++++|+||..|++..+...... . ...++ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--~------~~~~v---~~------ 62 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLD--P------ESTLV---ER------ 62 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCC--c------CcCCH---HH------
Confidence 5678999999999999999999999999983 8999999999997543321100 0 00011 11
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.+++.+|.+++.+++||+++ +| +++|+||..|++.
T Consensus 63 ----------i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~---~~~Gvvs~~dl~~ 112 (113)
T cd04587 63 ----------VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SG---QVVGLLDVTKLTH 112 (113)
T ss_pred ----------hcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CC---CEEEEEEHHHhcc
Confidence 25677889999999999999999999999999973 36 8999999999975
No 63
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.31 E-value=7.5e-11 Score=95.84 Aligned_cols=109 Identities=19% Similarity=0.358 Sum_probs=87.9
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.+++.+.++.+|.+.|.++++..+||.|+ ++++|+++..|++..+.... .. ...++ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~-----~~----~~~~i---~~------ 61 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEG-----LD----PDTPV---SE------ 61 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccC-----CC----ccCCH---HH------
Confidence 5678999999999999999999999999994 89999999999976443110 00 00011 11
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|..+++++.+++++.++++.|.+++.+++||++ + | +++|++|.+|+++
T Consensus 62 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Giit~~di~~ 110 (111)
T cd04800 62 ----------VMTAPPITIPPDATVFEALLLMLERGIHHLPVVD---D-G---RLVGVISATDLLR 110 (111)
T ss_pred ----------HhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhc
Confidence 2456788999999999999999999999999997 2 6 8999999999985
No 64
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.9e-11 Score=100.50 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=84.1
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHH--HHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL--RELGTNGSNLTEEELETHTISAWKVGKLQ 243 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l--~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (384)
+++++..++++.+|++.|.++++..+||+|+ .++++|+++..|+.+.. .......... ...+ ..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~-----~~~~---v~~---- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISR-----SELT---VAD---- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCc-----hheE---HHH----
Confidence 3578999999999999999999999999995 68999999999997521 1111000000 0000 111
Q ss_pred hccccccCCCCCCCCCCceE--e----CCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQ--A----GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~it--v----~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|+++... + .+++++.++++.|.+++++++||+|+ +.| +++|+||.+||++
T Consensus 69 ------------im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--~~~---~~~G~it~~di~~ 125 (126)
T cd04640 69 ------------VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR--EHH---QIRGIISTSDIAR 125 (126)
T ss_pred ------------hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--CCC---EEEEEEeHHHHhh
Confidence 24443322 3 37899999999999999999999984 225 7999999999985
No 65
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.8e-11 Score=99.30 Aligned_cols=118 Identities=16% Similarity=0.337 Sum_probs=89.6
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh---hHHHHHHHHH
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH---TISAWKVGKL 242 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~---~i~~~~~~~~ 242 (384)
+++++.+++++.+|++.|.+++...+||+|. .++++|+++..|+++..... .. . ++.... .-..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~-~~---~--~~~~~~~~~~~~~~~~--- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVR-TS---V--EDQQRTQTKASPTVEK--- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhcccc-cc---c--cchhhhhhhccCcHHH---
Confidence 5678999999999999999999999999985 68999999999997532100 00 0 000000 0000111
Q ss_pred hhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 243 QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 243 ~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|.++++++.+++++.+++..|.+++.+++||+|+ +| +++|++|..|++++
T Consensus 72 -------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvit~~dl~~~ 122 (122)
T cd04635 72 -------------IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KD---QLVGIVDRHDVLKA 122 (122)
T ss_pred -------------HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---cEEEEEEhHHhhcC
Confidence 25677899999999999999999999999999983 36 89999999999863
No 66
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.30 E-value=7.7e-11 Score=95.54 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=88.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.++++++++.+|++.|.+++...+||.|. ++++|+++..|+++........ .. .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~----------~~---~v~~------ 60 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDL----------QT---PVGE------ 60 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCC----------Cc---CHHH------
Confidence 4668999999999999999999999999984 8999999999998655321100 00 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..+++++.+++++.+++..|.+.+.+.+||+|. +| +++|+||.+|+++
T Consensus 61 ----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~di~~ 110 (111)
T cd04611 61 ----------VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DG---ELLGLLSQTDLLQ 110 (111)
T ss_pred ----------hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CC---cEEEEEEhHHhhc
Confidence 24677899999999999999999999999999983 36 7999999999975
No 67
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.30 E-value=5.6e-11 Score=97.74 Aligned_cols=121 Identities=20% Similarity=0.347 Sum_probs=90.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.+++.+.++.+|++.|.++++..+||+|. ++++|+++..|+...+...... ....+.... . ... .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~---~~~~~~~~~-~---~~~--~~- 69 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT---LDIWELYYL-L---SKI--KV- 69 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc---ccchhhhhh-h---ccc--CH-
Confidence 4678999999999999999999999999995 8999999999998654321110 000000000 0 000 00
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
..+|..+++++.+++++.+++..|.+++.+++||+|+ +| +++|+||..|++++
T Consensus 70 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvvt~~di~~~ 122 (122)
T cd04585 70 --------SDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QG---RLVGIITESDLFRA 122 (122)
T ss_pred --------HHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CC---cEEEEEEHHHhhhC
Confidence 0135678899999999999999999999999999973 36 89999999999863
No 68
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.30 E-value=5.8e-11 Score=95.93 Aligned_cols=106 Identities=14% Similarity=0.264 Sum_probs=87.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.+++++.++.+|.+.|.++++..+||.|. .++++|+++..|++..... . .. +.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~---~-~~-------------v~~------ 58 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE---A-KS-------------LED------ 58 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc---C-Cc-------------HhH------
Confidence 4568899999999999999999999999995 5899999999999753310 0 00 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|...+.++.+++++.+|+..|.+++.+++||+++ +| +++|++|.+|+++
T Consensus 59 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g---~~~Gvit~~~l~~ 108 (109)
T cd04583 59 ----------IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DG---KLVGLITRSSLVD 108 (109)
T ss_pred ----------hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CC---eEEEEEehHHhhc
Confidence 24567889999999999999999999999999983 36 8999999999975
No 69
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=1.1e-10 Score=95.04 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=87.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.+++...+||+|+ ++++|+++..|++..+.......... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~-----------~~~~------ 62 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREV-----------PVGE------ 62 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccC-----------CHHH------
Confidence 5678999999999999999999999999995 49999999999987553211000000 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||.+|+++
T Consensus 63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~ 111 (112)
T cd04802 63 ----------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM 111 (112)
T ss_pred ----------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence 24677889999999999999999999999999973 4 7999999999975
No 70
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=9.1e-11 Score=119.79 Aligned_cols=128 Identities=13% Similarity=0.273 Sum_probs=100.3
Q ss_pred HHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCC--CeEEEEeehHHHHHHHHHhccC
Q 016718 143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFILILRELGTN 220 (384)
Q Consensus 143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~--~~~vGilT~~Dli~~l~~~~~~ 220 (384)
.+...+++.+ +..+.| ..+++++++++++.+|.++|.+++++.+||+|.+. ++++|+||.+|++... ..
T Consensus 71 ~q~~~V~~Vk---~~~~~~--~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~~ 141 (450)
T TIGR01302 71 EQAEQVKRVK---RAENGI--ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----DK 141 (450)
T ss_pred HHHHHHhhhc---cccCce--ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----cC
Confidence 3334444444 345566 45788999999999999999999999999999632 6999999999996321 00
Q ss_pred CCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCccc
Q 016718 221 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 299 (384)
Q Consensus 221 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~ 299 (384)
. .+ +.+ +|+ .+++++.+++++.+|+.+|.+++++.+||+|+ +| +
T Consensus 142 --~--------~~---V~d----------------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G---~ 186 (450)
T TIGR01302 142 --G--------KP---VSE----------------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NG---E 186 (450)
T ss_pred --C--------CC---HHH----------------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---c
Confidence 0 01 122 245 48999999999999999999999999999984 46 8
Q ss_pred EEEEeeHHHHHHHHH
Q 016718 300 ILYLASLSDILKCIC 314 (384)
Q Consensus 300 lvGiit~~dil~~l~ 314 (384)
++|+||.+||++.+.
T Consensus 187 lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 187 LVGLITMKDIVKRRK 201 (450)
T ss_pred EEEEEEhHHhhhccc
Confidence 999999999999863
No 71
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.28 E-value=4.1e-11 Score=96.77 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=83.7
Q ss_pred EEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccc
Q 016718 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247 (384)
Q Consensus 168 v~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 247 (384)
+++.+++++.+|.+.|.++++..+||+|. ++++|+++..|+++.. . . ...+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-----~-~-------------~~~~-------- 54 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-----Y-G-------------DVVD-------- 54 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-----c-c-------------chhh--------
Confidence 57899999999999999999999999993 8999999999986421 0 0 0111
Q ss_pred cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 248 ~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|.....++.+++++.+|+..|.+++.+.+||+|+ | +++|++|..|+++
T Consensus 55 --------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~iGvit~~dl~~ 103 (104)
T cd04594 55 --------YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD----G---KFKGIVTLDSILD 103 (104)
T ss_pred --------hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC----C---EEEEEEEHHHhhc
Confidence 14566789999999999999999999999999972 6 8999999999975
No 72
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.27 E-value=9.1e-11 Score=120.89 Aligned_cols=131 Identities=13% Similarity=0.137 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhc
Q 016718 141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELG 218 (384)
Q Consensus 141 ~e~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~ 218 (384)
.|.....+++.++ .... | ..+++++.+++|+.+|.++|.++++..+||+|+. .++++|+||.+|+.... .
T Consensus 89 ~E~q~~~Irkvk~-~~~g--m--i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~ 160 (505)
T PLN02274 89 AEEQAAIVRKAKS-RRVG--F--VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---D 160 (505)
T ss_pred HHHHHHHHHHhhc-cccc--c--cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---c
Confidence 3344444444443 2322 5 4578899999999999999999999999999853 37999999999985321 0
Q ss_pred cCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCC--ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCC
Q 016718 219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS 296 (384)
Q Consensus 219 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~--~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~ 296 (384)
.. . .+.++ |+++ ++++.+++++.+|+++|.+++++++||+|+ ++
T Consensus 161 ~~-~-------------~V~eI----------------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g- 206 (505)
T PLN02274 161 RE-T-------------KLSEV----------------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DG- 206 (505)
T ss_pred cC-C-------------cHHHH----------------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC-
Confidence 00 0 11222 4544 889999999999999999999999999983 36
Q ss_pred cccEEEEeeHHHHHHHHHh
Q 016718 297 CQEILYLASLSDILKCICR 315 (384)
Q Consensus 297 ~~~lvGiit~~dil~~l~~ 315 (384)
+|+|+||.+||++++..
T Consensus 207 --~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 207 --ELVDLVTRTDVKRVKGY 223 (505)
T ss_pred --eEEEEEEHHHHHHHhhC
Confidence 89999999999999864
No 73
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.27 E-value=5e-11 Score=124.75 Aligned_cols=216 Identities=14% Similarity=0.142 Sum_probs=133.6
Q ss_pred ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccC--C-----------
Q 016718 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN--G----------- 221 (384)
Q Consensus 155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~--~----------- 221 (384)
.+|.|+| ..+++++++++++.+|+++|.+++++.+||+|+ +++++|+||..|+.+.+...... .
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 6899999 568899999999999999999999999999995 68999999999999865432100 0
Q ss_pred -----------CCC------------Chhhhh----hh-------hHH-----------------------HHHHHHHhh
Q 016718 222 -----------SNL------------TEEELE----TH-------TIS-----------------------AWKVGKLQL 244 (384)
Q Consensus 222 -----------~~~------------~~~~l~----~~-------~i~-----------------------~~~~~~~~~ 244 (384)
... ..+.+. .. ... ...+..++.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~ 224 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN 224 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence 000 000000 00 000 000000000
Q ss_pred c---------------cccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHH
Q 016718 245 N---------------LKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (384)
Q Consensus 245 ~---------------~~~~~~~~~~~m~-~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~d 308 (384)
+ ..........+|+ ++++++++++++.+|..+|.+++++++||+|+ +| +++|+||..|
T Consensus 225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g---~lvGiit~~d 298 (546)
T PRK14869 225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DG---KVVGVISRYH 298 (546)
T ss_pred CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CC---CEEEEEEHHH
Confidence 0 0000000012588 88999999999999999999999999999983 46 8999999999
Q ss_pred HHHHHHhhcccCC--CCcccccccccccc-cccccc-ccccCCCCCceEe---CCCCCHHHHHHHHHhCCCceeeeccc
Q 016718 309 ILKCICRHFKHSS--SSLPILQQPVSSIQ-LGTWVP-RIGEANGRPFAML---RPTASLGSALALLVQGDLTLFQQPAI 380 (384)
Q Consensus 309 il~~l~~~~~~~~--~~~~~~~~~v~~l~-ig~~~~-~v~~~~~~~v~tv---~~d~~v~~a~~~m~~~~is~lPV~~~ 380 (384)
+++....++.-.. ........ +.+.. ++-+-. +++.++.+.++.+ ....+...+.++|.++++...|++|-
T Consensus 299 l~~~~~~~~iLVD~~e~~q~~~~-~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~ 376 (546)
T PRK14869 299 LLSPVRKKVILVDHNEKSQAVEG-IEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG 376 (546)
T ss_pred hhccccCceEEEcCccccccccc-hhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH
Confidence 9996543211000 00000000 00000 000111 1344555555544 34566778999999999999988763
No 74
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=1.4e-10 Score=94.46 Aligned_cols=111 Identities=20% Similarity=0.375 Sum_probs=87.2
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++++++++.+|.+.|.+++...+||.|+ ++++|++|..|++..+...... . ...+ ..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~---~-----~~~~---~~~------ 62 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD---P-----DTTT---VGD------ 62 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCC---c-----ccCC---HHH------
Confidence 5678999999999999999999999999994 8999999999986322110000 0 0000 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|...+.++.+++++.+++..|.+++.+++||+|+ +| +++|++|..|+++
T Consensus 63 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~ 112 (113)
T cd04622 63 ----------VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLAR 112 (113)
T ss_pred ----------hccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 24567889999999999999999999999999973 36 8999999999976
No 75
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.25 E-value=3.1e-11 Score=95.08 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=61.8
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEE-ecCCceEEEEEEEcCEeecCCCCCeeeCCCCCeeeE
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~-~L~~G~y~YkFiVDG~w~~d~~~p~~~d~~G~~nNv 99 (384)
.++|+ |...+++|.|.|+|++|.. .+|++.+ +|.|++++ .|++|.|+|+|++||.|+.||.++...-..+...|.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 57887 5557899999999998875 7899865 79999998 488899999999999999999999866444554444
No 76
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=9.5e-11 Score=120.57 Aligned_cols=108 Identities=22% Similarity=0.307 Sum_probs=88.1
Q ss_pred EEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 168 v~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
.++.+++|+.+|+++|.++++..+||+|.. .++++|+||..|+... ... . ..+ +.++
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~----~~~---~------~~~---V~dI----- 166 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS----RMS---L------DTK---VKDF----- 166 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc----ccC---C------CCC---HHHH-----
Confidence 489999999999999999999999999952 5799999999998421 000 0 001 1222
Q ss_pred cccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 246 LKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 246 ~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
|+. +++++.+++++.+|+++|.+++++++||+|+ +| +|+|+||.+|+++..
T Consensus 167 -----------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~---~g---~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 167 -----------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK---NG---NLVYLVFRKDYDSHK 219 (502)
T ss_pred -----------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEhHHHHhcc
Confidence 454 7899999999999999999999999999983 36 899999999999964
No 77
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.24 E-value=1.3e-10 Score=94.63 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=88.4
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.++.++.++.+|.+.|.+++.+.+||.|. .++++|+|+..|+.+.+..... . ...++ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~----~-----~~~~v---~~------ 63 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD----I-----LTLPV---AD------ 63 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc----c-----ccCCH---HH------
Confidence 3557889999999999999999999999995 6899999999999876542110 0 00001 11
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|..++.++.+++++.++++.|.+++.+.+||+++ +| +++|+||..||++
T Consensus 64 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~iG~it~~di~~ 113 (114)
T cd04604 64 ----------VMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NG---RPVGVLHIHDLLR 113 (114)
T ss_pred ----------hhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEEEHHHhhc
Confidence 24567789999999999999999999999999973 36 8999999999986
No 78
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.24 E-value=1.5e-10 Score=93.62 Aligned_cols=109 Identities=22% Similarity=0.340 Sum_probs=84.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
.+++++.++++.+|.+.|.++++..+||+|. ++++|++|..|+.+.+...... . . . ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~---~-----~-~---~~~~------ 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK---F-----S-L---PVRE------ 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc---c-----C-c---CHHH------
Confidence 4678899999999999999999999999994 8999999999998765321100 0 0 0 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
.|..+++++.+++++.+++.+|.+ . +.+||++. +| +++|++|.+||++|
T Consensus 62 ----------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~---~~~Gvvt~~di~~~ 110 (110)
T cd04609 62 ----------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GG---KFVGIITRADLLKY 110 (110)
T ss_pred ----------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CC---eEEEEEeHHHhhcC
Confidence 246678899999999999999988 3 45788873 36 89999999999875
No 79
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.24 E-value=1.2e-10 Score=95.56 Aligned_cols=107 Identities=19% Similarity=0.294 Sum_probs=84.0
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (384)
.++++..++++.+|.+.|.++++..+||+|.. .++++|+++..|++.... ... ...+.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~----~~~-------------~v~~~--- 62 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD----SET-------------PLSEV--- 62 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc----cCC-------------CHHHh---
Confidence 45688999999999999999999999999842 589999999999853210 000 01222
Q ss_pred hccccccCCCCCCCCCCceEeCC--CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQAGP--YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~itv~~--~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
|.....++.+ ++++.+++..|.+++++.+||+|+ +| +++|+||.+||++
T Consensus 63 -------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~---~~~Gvit~~di~~ 113 (114)
T cd04602 63 -------------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DG---ELVALVTRSDLKK 113 (114)
T ss_pred -------------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CC---eEEEEEEHHHhhc
Confidence 4555556655 999999999999999999999973 36 8999999999975
No 80
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.24 E-value=2.3e-10 Score=94.32 Aligned_cols=119 Identities=19% Similarity=0.339 Sum_probs=89.0
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++.+++.++++.+|++.|.+++...+||+|. .++++|+|+..|+++............+.......+ ..+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~---v~~------ 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP---VKE------ 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC---HHH------
Confidence 4678899999999999999999999999995 589999999999976543211100000000000000 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|..+++++.+++++.+++..|.+++.+.+||+| + | +++|++|..||++
T Consensus 72 ----------~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~~Gvv~~~di~~ 120 (121)
T cd04584 72 ----------IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE---D-G---RLVGIITETDLLR 120 (121)
T ss_pred ----------HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHhhc
Confidence 2456788999999999999999999999999997 2 6 8999999999986
No 81
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=2e-10 Score=92.19 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=85.0
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|.+.|.+++...+||+| +++++|++|..|++... .. . . ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~----~~-~----------~---~~~------ 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAH----PN-R----------L---VAD------ 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhccc----cc-C----------C---HHH------
Confidence 456889999999999999999999999998 37999999999986421 00 0 0 111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil 310 (384)
.|..++.++.+++++.+|++.|.+++...+||+| + | +++|+||..|++
T Consensus 56 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~~l~ 103 (105)
T cd04599 56 ----------AMTREVVTISPEASLLEAKRLMEEKKIERLPVLR---E-R---KLVGIITKGTIA 103 (105)
T ss_pred ----------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE---C-C---EEEEEEEHHHhc
Confidence 2456788999999999999999999999999998 3 6 899999999987
No 82
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=1.9e-10 Score=92.68 Aligned_cols=105 Identities=19% Similarity=0.362 Sum_probs=86.4
Q ss_pred CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
.+++++..+.++.+|++.|.+++...+||.|. ++++|+++..|++.. . ... .+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~------~-~~~-----------~~~~----- 56 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK------D-PDE-----------TVEE----- 56 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc------C-ccc-----------cHHH-----
Confidence 35778999999999999999999999999983 899999999998631 0 000 1122
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|...+.++.+++++.+|+..|.+++.+++||+++ +| +++|+|+..|+++
T Consensus 57 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvi~~~di~~ 106 (107)
T cd04610 57 -----------IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NN---NLVGIITNTDVIR 106 (107)
T ss_pred -----------hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CC---eEEEEEEHHHhhc
Confidence 24567889999999999999999999999999983 36 8999999999986
No 83
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=1e-10 Score=95.08 Aligned_cols=103 Identities=18% Similarity=0.357 Sum_probs=83.0
Q ss_pred EecCccHHHHHHHHHHcC-----CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 170 i~~~~~l~~A~~~L~~~~-----i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
+.+++++.+|++.|.+++ ...+||+|+ .++++|+||..|++.. . ... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~------~-~~~-----------~v~~----- 57 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA------D-PDT-----------PVSD----- 57 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC------C-Ccc-----------hHHH-----
Confidence 578899999999999887 578999985 6899999999998631 0 000 0122
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
+|..++.++.+++++.+++..|.+++.+.+||+|+ +| +++|+||.+|+++++
T Consensus 58 -----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~~ 109 (109)
T cd04606 58 -----------IMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDVI 109 (109)
T ss_pred -----------HhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhhC
Confidence 14567899999999999999999999999999973 36 899999999999763
No 84
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=7.3e-11 Score=95.07 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=69.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
.++++++++++.+|+++|.+++++++||+|+ ++| +++|+||..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence 4789999999999999999999999999983 235 8999999999987431
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.++.+++++.+|+++|.+++++++||+
T Consensus 52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVv 79 (98)
T cd04618 52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVI 79 (98)
T ss_pred -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEE
Confidence 3689999999999999999999999997
No 85
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=2.5e-10 Score=98.06 Aligned_cols=136 Identities=19% Similarity=0.347 Sum_probs=91.7
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCC-----CChhhhhhhhHHHHHHH
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN-----LTEEELETHTISAWKVG 240 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~-----~~~~~l~~~~i~~~~~~ 240 (384)
+++++++++++.+|++.|.++++.++||+|+ ++++|++|..|++..+......... ..........+..|.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 4678999999999999999999999999994 7999999999998766432210000 00000000000111111
Q ss_pred HHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 241 ~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
......... .....+|..++.++.+++++.+|+..|.+++.+++||++. | +++|++|.+|+++
T Consensus 80 ~~~~~~~~~-~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGK-MKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----G---RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhc-CCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence 110000000 0000135678899999999999999999999999999972 6 8999999999975
No 86
>PRK11573 hypothetical protein; Provisional
Probab=99.22 E-value=4.7e-10 Score=113.30 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=125.8
Q ss_pred hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhh
Q 016718 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (384)
Q Consensus 152 l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~ 231 (384)
|++.++.|+|..-.+++.++.++++.++++.+.+++.+.+||.+++.++++|+|..+|++..+... ....
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~----~~~~------ 253 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEFT------ 253 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc----CcCC------
Confidence 468999999999999999999999999999999999999999987668999999999998643211 0010
Q ss_pred hhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+..+.+ .-+++..|+.+.++.++++.|.+++.|-..|+|+ .| ...||||..||++
T Consensus 254 --~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilE 308 (413)
T PRK11573 254 --KENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILE 308 (413)
T ss_pred --HHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHH
Confidence 111111 1357889999999999999999999999999983 46 6999999999999
Q ss_pred HHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718 312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (384)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m 367 (384)
.+......... ..-...+..+.- ..+.++..+++.++-+.+
T Consensus 309 eivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 309 EIVGDFTTSMS--PTLAEEVTPQND-------------GSVIIDGTANVREINKAF 349 (413)
T ss_pred HHhCCCCcccC--cccccceEEecC-------------CEEEEEeeeEHHHHHHHh
Confidence 99976543211 000111222222 345788888888888776
No 87
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.22 E-value=3.3e-10 Score=90.80 Aligned_cols=111 Identities=28% Similarity=0.487 Sum_probs=89.5
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++++++.+.++.+|++.|.+++...+||+|. .++++|+++..|++..+...... .. . ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~--~~-----~-----~~~~------ 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLD--PL-----V-----TVGD------ 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCC--cc-----c-----cHHH------
Confidence 4678899999999999999999999999995 58999999999998765432111 00 0 0011
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|..++.++.+++++.+++..|.+++.+.+||+|. +| +++|++|..|+++
T Consensus 63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~ 112 (113)
T cd02205 63 ----------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EG---RLVGIVTRSDILR 112 (113)
T ss_pred ----------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHhhc
Confidence 24567889999999999999999999999999984 36 8999999999986
No 88
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.19 E-value=2.9e-10 Score=97.07 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=79.8
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
+++++.+++++.+|++.|.++++..+||+|+ .++++|+||..|+++.+............+-+.... ....+++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~-- 77 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT-CLVSSVCTK-- 77 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhccccc-ccHHHHhhh--
Confidence 4679999999999999999999999999996 689999999999988764321110000000000000 000111100
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEec
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~ 290 (384)
....+.|+.+++++.+++++.+|+.+|.+++++++||+|+
T Consensus 78 -----~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 78 -----GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -----hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0000125678999999999999999999999999999984
No 89
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.19 E-value=1.5e-10 Score=93.68 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=83.9
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++++++.++++.+|.+.|.+++...+||.|. .++++|++|..|++... .. .. ++ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~~--~~--------~v---~~------ 58 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFET----DL--DK--------PV---SE------ 58 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeecc----cC--CC--------CH---HH------
Confidence 4678899999999999999999999999995 58999999999985210 00 00 11 11
Q ss_pred cccccCCCCCCCCCCceEeCC-CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGP-YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~-~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|...+..+.+ ++++.+|+.+|.+++.+++||+|+ +| +++|+||.+|+++
T Consensus 59 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~ 109 (110)
T cd04601 59 ----------VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEK 109 (110)
T ss_pred ----------hcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhc
Confidence 13444556666 999999999999999999999973 36 8999999999986
No 90
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.19 E-value=3.5e-10 Score=115.68 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=100.6
Q ss_pred HHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCCh
Q 016718 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226 (384)
Q Consensus 147 ~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~ 226 (384)
...++|+..++.++| +.+++++.+++++.+|++.|.++++..+||+|. .++++|+||..|+++.+...... .
T Consensus 327 ~~~~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~---~-- 398 (454)
T TIGR01137 327 TVFDVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKAN---P-- 398 (454)
T ss_pred cHHHHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCC---c--
Confidence 456679999999999 567899999999999999999999999999995 68999999999998755421100 0
Q ss_pred hhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeH
Q 016718 227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 306 (384)
Q Consensus 227 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~ 306 (384)
+ .+ +.+ +|..++.++.+++++.+++.+|.+++ .||+++ +| +++|+||.
T Consensus 399 ---~-~~---v~~----------------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~---~g---~liGvvt~ 446 (454)
T TIGR01137 399 ---D-DA---VSK----------------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE---EG---KPIGVVTK 446 (454)
T ss_pred ---C-CC---HHH----------------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE---CC---EEEEEEEH
Confidence 0 01 111 25678889999999999999998864 355552 36 89999999
Q ss_pred HHHHHHH
Q 016718 307 SDILKCI 313 (384)
Q Consensus 307 ~dil~~l 313 (384)
+||+++|
T Consensus 447 ~dll~~l 453 (454)
T TIGR01137 447 IDLLSFL 453 (454)
T ss_pred HHHHHhh
Confidence 9999986
No 91
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.19 E-value=1.5e-10 Score=110.07 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=91.4
Q ss_pred ccccccCCCCCc-EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718 155 HTVYELLPDSGK-VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (384)
Q Consensus 155 ~~~~dvmp~s~~-vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (384)
.++.++|. .+ ++++.+++++.+|++.|.+.++..+||+|+ +++++|+||..|+++.+.... . . +
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~-~---~-----~--- 219 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGG-S---L-----K--- 219 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCC-c---c-----c---
Confidence 67899994 44 789999999999999999999999999995 689999999999987543110 0 0 0
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEee
Q 016718 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305 (384)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit 305 (384)
....+ +|.++++++.+++++.+|+.+|.+++++++||+|+ +| +++|+|+
T Consensus 220 -~~v~~----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~GvI~ 268 (268)
T TIGR00393 220 -SEVRD----------------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HN---KVLGVLH 268 (268)
T ss_pred -CcHHH----------------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---eEEEEEC
Confidence 00122 35788999999999999999999999999999983 36 8999985
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.16 E-value=3.3e-10 Score=96.67 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=79.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC-ccccc---ccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ 335 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-~~~~~---~~v~~l~ 335 (384)
.++++.+++++.+|++.|.++++.++||+|+ +| +++|+||..|+++++.......... ...+. ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 4689999999999999999999999999983 36 8999999999999886532110000 00000 0111111
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
.... +.+.|.++++++++++++.+|+++|.+++++++||+-
T Consensus 76 ~~~~---~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 76 TKGI---SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred hhhh---hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 1000 1123457899999999999999999999999999974
No 93
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.16 E-value=3.9e-10 Score=112.38 Aligned_cols=125 Identities=25% Similarity=0.364 Sum_probs=98.0
Q ss_pred CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
..+..+..++|+.+|++.|.++++.++||+|. .|+.+|+++..|........... +. ++ + .+.+.....
T Consensus 237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~--~~---~~---~--~l~~~~~~~ 305 (381)
T KOG1764|consen 237 SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYN--NL---DL---S--CLSEALSHR 305 (381)
T ss_pred hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccC--cc---ch---h--HHHHHhhhc
Confidence 35899999999999999999999999999996 56779999999998765533221 11 11 1 012222111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~ 316 (384)
+ ....++++|.++.+|.+++..|..+++||+.|+|+ +| .|+|+||.+||+.++...
T Consensus 306 ~----------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~---~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 306 P----------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DG---VLVGVISLSDILSYLVLT 361 (381)
T ss_pred c----------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CC---cEEEEeeHHHHHHHHHhC
Confidence 1 12456999999999999999999999999999984 46 899999999999999864
No 94
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=8.2e-10 Score=90.82 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=85.5
Q ss_pred cEEEEecCccHHHHHHHHHHcC-CCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~-i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (384)
++.++.+++++.+|++.|.+.+ +..+||+|+ ++++|+++..|+++++.... ........+ +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~------~~~~~~~~~---v~~----- 65 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPY------GRALYGKKP---VSE----- 65 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchh------hHHHHcCCc---HHH-----
Confidence 4557889999999999999887 899999995 89999999999976553210 000000001 111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCC---eeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA---TVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 245 ~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~---~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|..+++++.+++++.+|+..|.+++.+ .+||++. +| +++|+||..|+++
T Consensus 66 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvvs~~di~~ 118 (119)
T cd04598 66 -----------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EG---RYLGIGTVKDLLR 118 (119)
T ss_pred -----------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CC---eEEEEEEHHHHhc
Confidence 3577889999999999999999999865 3468873 36 8999999999975
No 95
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=5.8e-10 Score=92.32 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.+++++.+|+.+|.+++++++||+|+ +| +++|++|.+|+++++..+... ....++.+.
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~---- 64 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA---- 64 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----
Confidence 36789999999999999999999999999983 36 899999999999876433111 001111110
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ .....|..++.++.+++++.+|+++|.+++++.+||+
T Consensus 65 -~-~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv 102 (120)
T cd04641 65 -L-ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVV 102 (120)
T ss_pred -H-hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEE
Confidence 0 0112345678999999999999999999999999996
No 96
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.13 E-value=7e-10 Score=114.25 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=93.2
Q ss_pred cccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHH
Q 016718 158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235 (384)
Q Consensus 158 ~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~ 235 (384)
.+.| ...++++.+++++.+|.++|.++++..+||+|++ .++++|+||.+|+... .. .. ..
T Consensus 99 e~g~--i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-----~~-~~--------~~-- 160 (495)
T PTZ00314 99 ENGF--IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-----KD-KS--------TP-- 160 (495)
T ss_pred cccc--ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-----cc-CC--------CC--
Confidence 3455 3466899999999999999999999999999853 3799999999998521 00 00 01
Q ss_pred HHHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 236 AWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
+.+ +|++ +++++.+++++.+|+++|.+++++.+||+|+ ++ +++|+||.+||++..
T Consensus 161 -V~d----------------iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g---~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 161 -VSE----------------VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NG---ELVALVSRSDLKKNR 217 (495)
T ss_pred -HHH----------------hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEehHhhhcc
Confidence 122 2555 8999999999999999999999999999984 36 899999999999885
Q ss_pred H
Q 016718 314 C 314 (384)
Q Consensus 314 ~ 314 (384)
.
T Consensus 218 ~ 218 (495)
T PTZ00314 218 G 218 (495)
T ss_pred c
Confidence 4
No 97
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=2.3e-09 Score=86.44 Aligned_cols=104 Identities=20% Similarity=0.375 Sum_probs=85.6
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhc
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (384)
++++++.+.++.+|++.|.+++...+||.|+ .++++|+++..|++.. ... . ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~----~~~---~-----------~~~~------ 56 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRN----PEE---E-----------QLAL------ 56 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhc----ccc---c-----------hHHH------
Confidence 5678999999999999999999999999985 5899999999998631 000 0 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 246 ~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
.|..++.++.+++++.+++..|.+++.+.+||+|. | +++|++|..|+++
T Consensus 57 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~---~~~G~it~~d~~~ 105 (106)
T cd04638 57 ----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD----G---KLVGIVTVADIVR 105 (106)
T ss_pred ----------HhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence 13567889999999999999999999999999972 5 8999999999875
No 98
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1.2e-09 Score=90.89 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=77.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.+|++.|.+++++++||+|+ ++| +++|++|+.|+++++..+.............++ .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~---~---- 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL---R---- 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh---h----
Confidence 5778999999999999999999999999984 225 799999999999987644221100000000000 0
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
....|..++.++++++++.+|+++|.+++++++||+
T Consensus 70 ---~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 105 (123)
T cd04627 70 ---DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVV 105 (123)
T ss_pred ---hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEE
Confidence 112345689999999999999999999999999997
No 99
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.03 E-value=2.2e-09 Score=102.73 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=106.1
Q ss_pred hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (384)
Q Consensus 154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (384)
-.++.|+|....+...+..++++.+-.++-.+.|...+||+|. ..+++||+|.+|+++.. ++ +.
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~------~~----t~----- 250 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK------PS----TT----- 250 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC------CC----cc-----
Confidence 3578999987778889999999999999999999999999995 78999999999986421 10 01
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
.+. +|++.++++.+.+++..++++|.=.++.-+||+|+ +. +|+||||.+|+++.|
T Consensus 251 ----ieK---------------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~---~llGiitR~dvlk~l 305 (432)
T COG4109 251 ----IEK---------------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NN---TLLGIITRQDVLKSL 305 (432)
T ss_pred ----HHH---------------HhccCCeeecccchHHHHHHHHHhccceeeeEEcC---Cc---eEEEEEEHHHHHHHH
Confidence 111 48999999999999999999999999999999984 34 899999999999999
Q ss_pred Hhhccc
Q 016718 314 CRHFKH 319 (384)
Q Consensus 314 ~~~~~~ 319 (384)
-...++
T Consensus 306 q~~q~q 311 (432)
T COG4109 306 QMIQRQ 311 (432)
T ss_pred HHhccC
Confidence 876654
No 100
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.03 E-value=2.8e-09 Score=88.01 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=75.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|+..|.++++..+||+|. +| +++|++|..|+++++.... . ..+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~-----~~~~~~ 63 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQK-----VPVGVI 63 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccC-----CCHHHH
Confidence 5789999999999999999999999999983 35 7999999999999875321 1 011 122222
Q ss_pred ccccccCCC--CCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANG--RPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~--~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ . .++.++++++++.+|+++|.+++++.+||+
T Consensus 64 ~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVv 97 (118)
T cd04617 64 M-------TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVV 97 (118)
T ss_pred h-------CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEE
Confidence 2 2 268899999999999999999999999997
No 101
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.02 E-value=3.7e-09 Score=86.36 Aligned_cols=96 Identities=21% Similarity=0.381 Sum_probs=81.4
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (384)
Q Consensus 257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (384)
|.+.++++.++.++.+|+.+|.++++.++||++. + +++|++|.+|+++++........
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~--------------- 62 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL--------------- 62 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc---------------
Confidence 4578899999999999999999999999999973 3 69999999999999986543210
Q ss_pred cccccccccCCCCCceEeCCCCCHHHHHHHHHh-CCCceeeecc
Q 016718 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-GDLTLFQQPA 379 (384)
Q Consensus 337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~-~~is~lPV~~ 379 (384)
.+.++|.++++++.+++++.+|+++|.+ ++++++||+-
T Consensus 63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 1233455689999999999999999999 7999999974
No 102
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=5e-09 Score=85.77 Aligned_cols=96 Identities=10% Similarity=0.134 Sum_probs=76.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|++.|.+++++.+||+|+ ++| +++|++|.+|+++++...... .... .+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~-----~v~~- 64 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRV-----NVYE- 64 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCcc-----CHHH-
Confidence 5788999999999999999999999999983 215 799999999999977542111 0111 2222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|.+++.++++++++.+|+++|.+++...+||+
T Consensus 65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 97 (114)
T cd04630 65 ------IMTKPLISVSPDMDIKYCARLMERTNIRRAPVV 97 (114)
T ss_pred ------HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEe
Confidence 234688999999999999999999999999996
No 103
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.98 E-value=3.7e-09 Score=87.54 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=79.6
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.+++++.+++..|.+++.+++||+|+ +| +++|+++.+|+++++....... ....++....+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~--- 70 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRRP--LRGRLRGRDKPET--- 70 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccch--hhhhhhccccccc---
Confidence 56889999999999999999999999999973 36 8999999999998775332100 0001110001112
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++.+|.++++++.+++++.+|+++|.+++++.+||+
T Consensus 71 ----i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv 106 (124)
T cd04600 71 ----VGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVV 106 (124)
T ss_pred ----HHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEE
Confidence 334456789999999999999999999999999997
No 104
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.95 E-value=7.6e-09 Score=84.83 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=76.2
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccc
Q 016718 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (384)
Q Consensus 261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~ 340 (384)
+.++.+++++.+|+..|.+++...+||+|+ +| +++|++|.+|+++++...... ..+.++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~-------- 62 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVE-------- 62 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccCCHH--------
Confidence 578999999999999999999999999984 46 899999999999876531101 0111222
Q ss_pred cccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 341 PRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 341 ~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
++|.++++++.+++++.+|++.|.++++..+||+-
T Consensus 63 ----~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 63 ----NVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred ----HHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEEC
Confidence 23356889999999999999999999999999974
No 105
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.95 E-value=4.3e-09 Score=103.14 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718 256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (384)
Q Consensus 256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~ 333 (384)
+|++ ++++++++++|.+|+++|.+++.+.+||+|+ +| +++|+||.+|+.+.+.... .+.+.
T Consensus 207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~~~---- 269 (326)
T PRK10892 207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLRQA---- 269 (326)
T ss_pred HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------CcccC----
Confidence 5776 8999999999999999999999888888873 46 8999999999987543211 11111
Q ss_pred ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ +.++|.+++.++.+++++.+|+++|.+++++++||+
T Consensus 270 -~-------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 306 (326)
T PRK10892 270 -S-------IADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVA 306 (326)
T ss_pred -C-------HHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEe
Confidence 2 233456789999999999999999999999999997
No 106
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.93 E-value=3.4e-08 Score=100.46 Aligned_cols=172 Identities=18% Similarity=0.258 Sum_probs=127.6
Q ss_pred HHHHHHHh--hhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC
Q 016718 144 SRDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG 221 (384)
Q Consensus 144 ~~~~~~~~--l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~ 221 (384)
+..-+... |++.++.++|..-.+++.++.+.++.++.+.+.+++.+.+||.+...+.++|++...||+..+.....
T Consensus 193 E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 193 EREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred HHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--
Confidence 44445555 46899999999999999999999999999999999999999999667899999999999865532110
Q ss_pred CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEE
Q 016718 222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL 301 (384)
Q Consensus 222 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lv 301 (384)
.. . ... . -++++.|++..++.+++..|.+.+.|-.-|+|+ .| .+.
T Consensus 271 -~~--------~----~~~---------------~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~ 315 (429)
T COG1253 271 -DL--------D----LRV---------------L-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVE 315 (429)
T ss_pred -cc--------c----hhh---------------c-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeE
Confidence 00 0 000 0 137889999999999999999999999999984 36 699
Q ss_pred EEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCCCCceEeCCCCCHHHHHHHH
Q 016718 302 YLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (384)
Q Consensus 302 Giit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m 367 (384)
|+||..||++.+.......... .-...+.+.. ... .-+...+++.+.-+.+
T Consensus 316 GlVTleDIiEeIvGei~de~d~--~~~~~~~~~~------------~~~-~~v~G~~~l~e~~~~l 366 (429)
T COG1253 316 GLVTLEDIIEEIVGEIPDEHDE--DEEEDIIQRD------------DDG-WLVDGRVPLEELEELL 366 (429)
T ss_pred EEeEHHHHHHHHhCCCcCcccc--cccccceEec------------CCc-EEEeccccHHHHHHHh
Confidence 9999999999999765432110 0001111111 112 5678888888877766
No 107
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.93 E-value=1.3e-08 Score=82.45 Aligned_cols=95 Identities=15% Similarity=0.261 Sum_probs=76.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++++++++.+++..|.+++.+++||+|+ ++ +++|+++..|+++++...... ... ..+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~-----~~~~~- 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALD-----TPVSE- 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc-----cCHHH-
Confidence 5678999999999999999999999999983 35 899999999999987643211 001 12222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|.+++.++.+++++.++++.|.+++.+.+||+
T Consensus 64 ------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv 96 (113)
T cd04623 64 ------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVV 96 (113)
T ss_pred ------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEE
Confidence 334688999999999999999999999999986
No 108
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.92 E-value=9.7e-09 Score=83.87 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=73.2
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccc
Q 016718 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (384)
Q Consensus 261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~ 340 (384)
++++.+++++.+|++.|.+++.+++||+|+ +| +++|+||..|+.+.... . ..+.++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---~------~~~~~v~~------- 60 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---D------YETLKVCE------- 60 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---c------ccccChhh-------
Confidence 578999999999999999999999999983 36 89999999999874210 1 11122222
Q ss_pred cccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 341 PRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 341 ~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|..++.++.+++++.+|+++|.+++++.+||+
T Consensus 61 -----~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVv 93 (111)
T cd04603 61 -----VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVV 93 (111)
T ss_pred -----eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEE
Confidence 234578899999999999999999999999997
No 109
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=1.6e-08 Score=81.94 Aligned_cols=91 Identities=19% Similarity=0.319 Sum_probs=75.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.+++++.+|+..|.+++..++||+|+ +| +++|++|..++++.+..... + +..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~-----------~-----~~~ 59 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDKK-----------S-----VED 59 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCcc-----------C-----HHH
Confidence 56789999999999999999999999999984 36 89999999999987653210 1 122
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
. |.+++.++.+++++.+|++.|.+++.+.+||+
T Consensus 60 ~-------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 92 (110)
T cd04605 60 I-------MTRNVITATPDEPIDVAARKMERHNISALPVV 92 (110)
T ss_pred h-------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEE
Confidence 2 23578899999999999999999999999997
No 110
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.91 E-value=9.4e-09 Score=84.70 Aligned_cols=103 Identities=14% Similarity=0.303 Sum_probs=78.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|+..|.+++.+++||+| + | +++|++|..++++++........ ......+..+..++++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRNLPVSDI 72 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhccCHHHH
Confidence 577899999999999999999999999998 2 6 89999999999988764321110 0011112222333444
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|..+..++.+++++.+|+++|.+.+++.+||+
T Consensus 73 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 104 (121)
T cd04633 73 -------MTRPVITIEPDTSVSDVASLMLENNIGGLPVV 104 (121)
T ss_pred -------ccCCceEECCCCcHHHHHHHHHHcCCCcccEE
Confidence 34688999999999999999999999999987
No 111
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.89 E-value=4e-09 Score=90.54 Aligned_cols=92 Identities=22% Similarity=0.413 Sum_probs=76.6
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (384)
Q Consensus 255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l 334 (384)
.+|++|+++|+|++++.+|+.+|.++|+..+||+++ + ++||-||..+|++.+...... ++++
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~e~-----------i~~~ 130 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGMES-----------IRSL 130 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccccc-----------hhhh
Confidence 379999999999999999999999999999999973 5 899999999999998764321 2223
Q ss_pred cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCC
Q 016718 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGD 371 (384)
Q Consensus 335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~ 371 (384)
. +.++|..+..+|++++++..+-.+|.+|.
T Consensus 131 ~-------vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~ 160 (187)
T COG3620 131 R-------VREVMGEPFPTVSPDESLNVISQLLEEHP 160 (187)
T ss_pred h-------HHHHhcCCCCcCCCCCCHHHHHHHHhhCC
Confidence 2 33456789999999999999988887664
No 112
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=1.9e-08 Score=83.00 Aligned_cols=103 Identities=15% Similarity=0.291 Sum_probs=78.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|+..|.+.+++++||+|+ +| +++|++|..++++++........ .... +...+..+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~v~~- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG--EESL-TKERDVPVAE- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc--cccc-ccccCcCHHH-
Confidence 5678999999999999999999999999984 36 89999999999998764332110 0000 1111222333
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++.+++.++.+++++.+|+++|.+.+.+++||+
T Consensus 72 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv 104 (122)
T cd04803 72 ------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVV 104 (122)
T ss_pred ------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEE
Confidence 345688999999999999999999999999986
No 113
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.87 E-value=6.7e-09 Score=74.74 Aligned_cols=56 Identities=20% Similarity=0.478 Sum_probs=50.7
Q ss_pred ccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718 157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (384)
Q Consensus 157 ~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~ 215 (384)
+.|+| +.+++++++++++.+|++.|.+++++.+||+|+ +++++|+||.+||++++.
T Consensus 1 v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIM--TPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHS--BSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHH
T ss_pred CeECC--cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhh
Confidence 35778 558999999999999999999999999999996 699999999999998764
No 114
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.87 E-value=6.6e-09 Score=105.10 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=84.1
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (384)
+++.+.++|+|.+|+.+|++.|.++|+..+.|++. ++ .++||||.+|+.+++....+. .+ .
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~-----~- 214 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KT-----Q- 214 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cc-----c-
Confidence 46889999999999999999999999999999983 45 799999999999998764322 11 1
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|+++|..|+++|...+.+.+|+-+|..++|.++||.
T Consensus 215 ------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~ 251 (610)
T COG2905 215 ------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT 251 (610)
T ss_pred ------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeee
Confidence 3445567899999999999999999999999999996
No 115
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=1.8e-08 Score=84.07 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=76.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc--cccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS--IQLG 337 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~--l~ig 337 (384)
.++++.+++++.+|+..|.++++.++||+|+ +| +++|++|..|+++......... .....+..+ ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~ 71 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFT 71 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcc
Confidence 4678999999999999999999999999984 36 8999999999999764322110 000000000 0001
Q ss_pred ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ ....+..++.++.+++++.+|+++|.+++++.+||+
T Consensus 72 ~----~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv 108 (126)
T cd04642 72 D----SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVV 108 (126)
T ss_pred c----ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEE
Confidence 1 112345789999999999999999999999999987
No 116
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.86 E-value=2.7e-08 Score=81.30 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=73.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcC-CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~-i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++.++++++++.+|++.|.+++ .+++||+|+ +| +++|++|..|+++...... .+.++.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~----- 61 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVIQ----- 61 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchhh-----
Confidence 5778999999999999998775 899999984 35 7999999999998764221 1122222
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.+.. ..++.++.+++++.+|++.|.+++++.+||+
T Consensus 62 ~~~~-----~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv 96 (114)
T cd04801 62 VMTP-----AAKLVTVLSEESLAEVLKLLEEQGLDELAVV 96 (114)
T ss_pred hhcc-----cccceEECCCCcHHHHHHHHHHCCCCeeEEE
Confidence 2210 0246799999999999999999999999997
No 117
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=1.8e-08 Score=82.05 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|++.|.++++.++||+|+ +| +++|+++..|+++.+....... ....+ +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~-----v~-- 63 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGVAT-----VR-- 63 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCCcc-----HH--
Confidence 5678999999999999999999999999983 35 8999999999999876532110 01111 22
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.|..+..++.+++++.+|++.|.+++.+++||+
T Consensus 64 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 97 (114)
T cd04629 64 -----DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVV 97 (114)
T ss_pred -----HHhccCceEECCCCcHHHHHHHHHHhCCCccCEE
Confidence 2234578899999999999999999999999986
No 118
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=3.4e-08 Score=80.20 Aligned_cols=93 Identities=17% Similarity=0.335 Sum_probs=75.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.+|+..|.+++.+++||+|+ +| +++|++|..|+++++..... .+.+ +.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~-----v~~- 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTP-----VSE- 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccC-----HHH-
Confidence 4678999999999999999999999999984 36 89999999999988764321 1111 222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|.+++.++.+++++.++++.|.+++++.+||+
T Consensus 62 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv 94 (112)
T cd04624 62 ------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVV 94 (112)
T ss_pred ------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEE
Confidence 234678999999999999999999999999986
No 119
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.85 E-value=1.8e-08 Score=80.52 Aligned_cols=78 Identities=6% Similarity=0.072 Sum_probs=69.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|+..|.++++..+||+|. +| +++|++|.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 5788999999999999999999999999983 36 899999999998732
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
.+.++.+++++.+|+++|.+++++.+||+-
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 79 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIIN 79 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEEC
Confidence 135899999999999999999999999973
No 120
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.84 E-value=3.2e-08 Score=80.71 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=75.1
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccc
Q 016718 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (384)
Q Consensus 261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~ 340 (384)
.+++.+++++.+|+..|.+++.+.+||+|+ +| +++|++|.+|+++.+..... .+.++. +
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~-----~-- 62 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDDPVS-----E-- 62 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCCCHH-----H--
Confidence 467899999999999999999999999983 36 89999999999987653211 111222 2
Q ss_pred cccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 341 PRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 341 ~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
+|..++.++.+++++.+|+++|.+++.+.+||+-
T Consensus 63 -----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 63 -----VMNRNPITAKVGSSREEILALMRERSIRHLPILD 96 (113)
T ss_pred -----hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC
Confidence 2345788999999999999999999999999974
No 121
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.84 E-value=3.1e-08 Score=84.30 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=78.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhccc-CCCC-ccccc--ccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSS-LPILQ--QPVSSIQ 335 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~-~~~~-~~~~~--~~v~~l~ 335 (384)
++.++++++++.+|+..|.+++...+||+|+ +| +++|++|..|+++++...... .+.. ..+.. ..-.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 3578999999999999999999999999983 36 899999999999987532111 0000 00000 0000000
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.......+.++|..++.++.+++++.+|++.|.+++++++||+
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv 118 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVV 118 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 0001112344556788999999999999999999999999997
No 122
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.83 E-value=4e-08 Score=79.64 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=75.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++++++++.+|+..|.+++.+++||+|+ | +++|+++..|+++++...- . ..+. .+.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~--~-----~~~~-----~i~~~ 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG--L-----DPDT-----PVSEV 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC--C-----CccC-----CHHHH
Confidence 5678999999999999999999999999982 5 8999999999998765321 0 0111 22222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|.++++++.+++++.+|++.|.+++.+++||+
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 94 (111)
T cd04800 63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVV 94 (111)
T ss_pred -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEe
Confidence 34688999999999999999999999999996
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.83 E-value=1.2e-08 Score=73.35 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=49.1
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~ 314 (384)
+|+++++++++++++.+|++.|.+++++++||+|+ +| +++|+||.+||++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DG---KLVGIISRSDLLKALL 56 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TS---BEEEEEEHHHHHHHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHhhhh
Confidence 37889999999999999999999999999999984 36 8999999999999986
No 124
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.83 E-value=4.4e-08 Score=80.14 Aligned_cols=94 Identities=16% Similarity=0.271 Sum_probs=75.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.++++.|.+.+.+++||+|+ +| +++|+++.+|+++++...... ... .+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~-----~~~~- 62 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS-----AVDE- 62 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc-----cHHH-
Confidence 4568899999999999999999999999984 36 899999999999877532110 001 1122
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|.+++.++.+++++.+|+++|.+++...+||+
T Consensus 63 ------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vv 95 (115)
T cd04593 63 ------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVV 95 (115)
T ss_pred ------hccCCceEECCCCCHHHHHHHHHHcCCceeeEE
Confidence 234688999999999999999999999999997
No 125
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.83 E-value=2.3e-08 Score=82.56 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=78.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++++++++.+|++.|.++++.++||+| + | +++|++|..|+++++...+..... .. .+ .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~-----~~--~~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAGE--TE-----KD--LATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhccccc--hH-----HH--HHHH
Confidence 568899999999999999999999999998 2 6 899999999999987643321100 00 00 0011
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
...++++|.++++++.+++++.+|++.|.+++.+.+||+
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv 104 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVV 104 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEE
Confidence 112334456789999999999999999999999999996
No 126
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.82 E-value=2.3e-08 Score=84.48 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccc--cccc--
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP--VSSI-- 334 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~--v~~l-- 334 (384)
+++.++.+++++.+|++.|.+++.+++||+|+ +| +++|+|+..|+++++...+.... ..+.... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 73 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRR--ARWLDLLAGAEELAA 73 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchh--hhHHHHhcchHHHHH
Confidence 56789999999999999999999999999983 35 89999999999987654321000 0000000 0000
Q ss_pred cc-cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 335 QL-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 335 ~i-g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.. -.....+.++|.+++.++.+++++.+|++.|.+++.+.+||+
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv 118 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVV 118 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEe
Confidence 00 000001233445688999999999999999999999999996
No 127
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=3.3e-08 Score=80.10 Aligned_cols=92 Identities=22% Similarity=0.386 Sum_probs=75.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|++.|.+.+..++||+|+ +| +++|+++..|+++++..... +.++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~------ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAPVRG------ 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCcHHH------
Confidence 4678999999999999999999999999983 36 89999999999988764211 112222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|..++.++.+++++.+|++.|.+++..++||+
T Consensus 61 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv 93 (111)
T cd04639 61 ------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVV 93 (111)
T ss_pred ------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEE
Confidence 234578899999999999999999999999997
No 128
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.82 E-value=3.3e-08 Score=80.17 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=76.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.++++.|.++++.++||+|+ +| +++|+++..|+.+++.... . .+ ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~-~-------~~----~~~---- 59 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPS-L-------YD----LVV---- 59 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhccc-c-------cc----cEE----
Confidence 5678999999999999999999999999984 35 7999999999998764311 0 00 011
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.++|.+++.++.+++++.++++.|.+.+.+++||+
T Consensus 60 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv 95 (114)
T cd04613 60 ---ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVV 95 (114)
T ss_pred ---HHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEE
Confidence 223345688999999999999999999999999997
No 129
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.81 E-value=4.3e-08 Score=79.45 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=74.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|+..|.+++...+||+++ ++| +++|++|..|+++++..... . .++. .+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~------~---~~~~-----~~ 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE------D---LDLR-----DL 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC------c---CCHH-----HH
Confidence 4688999999999999999999999999984 215 89999999999998753210 0 1111 22
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ +++.++.+++++.+|++.|.+++.+.+||+
T Consensus 63 ~--------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 93 (111)
T cd04590 63 L--------RPPLFVPESTPLDDLLEEMRKERSHMAIVV 93 (111)
T ss_pred h--------cCCeecCCCCcHHHHHHHHHhcCCcEEEEE
Confidence 2 367899999999999999999999999986
No 130
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.81 E-value=6.6e-08 Score=78.46 Aligned_cols=94 Identities=16% Similarity=0.278 Sum_probs=75.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++++++++.++++.|.+.+.+.+||+|+ + +++|+++..|+++.+...... ..+.+ +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~-----~~~- 62 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREVP-----VGE- 62 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccCC-----HHH-
Confidence 5678999999999999999999999999983 4 799999999999977543100 01111 222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|.+++.++.+++++.++++.|.+++..++||+
T Consensus 63 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 95 (112)
T cd04802 63 ------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95 (112)
T ss_pred ------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEe
Confidence 234578899999999999999999999999997
No 131
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=3.4e-08 Score=80.62 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=73.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
.++++++++++.+|+++|.+++++++||+|+ +| +++|+++.+|+++++........ ..+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~--------- 64 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLDL--ERLVDLK--------- 64 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCc---------
Confidence 4688999999999999999999999999983 36 89999999999998764321100 0000111
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++++|.+++.++.+++++.+|++.|.+++ .+||+
T Consensus 65 ---v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv 98 (116)
T cd04643 65 ---VIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVV 98 (116)
T ss_pred ---HHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEE
Confidence 22344568899999999999999998865 48875
No 132
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.80 E-value=6.3e-08 Score=78.61 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.++++.|.+++.+++||+| + | +++|+||..|+++.+...... ....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~------- 61 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLVE------- 61 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHH-------
Confidence 567899999999999999999999999997 3 5 899999999999765532110 0112222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++|.++..++.+++++.+|++.|.+++..++||+
T Consensus 62 -----~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv 95 (113)
T cd04587 62 -----RVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVV 95 (113)
T ss_pred -----HhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEE
Confidence 2334678899999999999999999999999986
No 133
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.80 E-value=6.3e-08 Score=78.42 Aligned_cols=92 Identities=16% Similarity=0.307 Sum_probs=75.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.+++++.+|+..|.+++..++||+| + | +++|+++..|+++.+.... ...+ +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~-----~~~ 60 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAP-----VKD 60 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCc-----HHH
Confidence 4678999999999999999999999999998 3 5 8999999999988763221 1122 222
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ |.++..++.+++++.+|+.+|.+++.+.+||+
T Consensus 61 ~-------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~ 93 (110)
T cd04595 61 Y-------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVV 93 (110)
T ss_pred H-------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEE
Confidence 2 34678899999999999999999999999986
No 134
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.79 E-value=6.8e-08 Score=78.13 Aligned_cols=91 Identities=19% Similarity=0.330 Sum_probs=75.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++++++++.+|++.|.+++++++||++ + | +++|+++..|+++++..... .. .+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~-----~v~~~ 60 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LA-----KVKDV 60 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------cc-----CHHHH
Confidence 578899999999999999999999999997 3 6 89999999999987543211 01 12222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+..++.++.+++++.++++.|.+.++..+||+
T Consensus 61 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~ 92 (110)
T cd04588 61 -------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVT 92 (110)
T ss_pred -------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEE
Confidence 34688999999999999999999999999997
No 135
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=4.4e-08 Score=81.12 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=77.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC----cccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSIQ 335 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----~~~~~~~v~~l~ 335 (384)
+++++.+++++.+|+.+|.+++...+||+|+ ++| +++|+|+..|+++++.......... ....+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~----- 71 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEP----- 71 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcC-----
Confidence 5678999999999999999999999999984 226 8999999999998876432110000 0001111
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.+.+.+++.++.+++++.++++.|.+.+.+.+||+
T Consensus 72 -------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~ 107 (125)
T cd04631 72 -------VRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVV 107 (125)
T ss_pred -------HHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEE
Confidence 223345688999999999999999999999999986
No 136
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.79 E-value=5.3e-08 Score=78.25 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=72.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++++++++.+|+..|.+++.+++||+|+ +| +++|++|..|+++.... + ++++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~~--------------~-----~~~~ 56 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASGG--------------C-----CGDH 56 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhccc--------------c-----hhhh
Confidence 4678999999999999999999999999973 36 89999999999875210 1 1222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ .++..++.+++++.+|++.|.+++++.+||+
T Consensus 57 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv 88 (106)
T cd04582 57 A-------EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCV 88 (106)
T ss_pred c-------ccCCEEECCCCCHHHHHHHHHHCCCCeeeEE
Confidence 2 3466889999999999999999999999997
No 137
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=4.5e-08 Score=82.37 Aligned_cols=108 Identities=11% Similarity=0.232 Sum_probs=78.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccc------cccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL------QQPVSS 333 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~------~~~v~~ 333 (384)
+++++++++++.+|++.|.+++++++||+|+ +| +++|+++..|+++++......... .... +.....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYV-TLLYSVIFLDESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccc-cccccccccchHHHHH
Confidence 4678999999999999999999999999983 35 899999999999988653211000 0000 000000
Q ss_pred ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+... .++.+|.+++.++.+++++.+++++|.+++.+.+||+
T Consensus 75 ~~~~----~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~ 115 (132)
T cd04636 75 LLGK----KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVV 115 (132)
T ss_pred HcCC----CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEE
Confidence 0000 1233455788999999999999999999999999996
No 138
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.79 E-value=3.2e-08 Score=96.65 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=80.0
Q ss_pred CCCCC--ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718 256 PCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (384)
Q Consensus 256 ~m~~~--~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~ 333 (384)
+|.++ ++++++++++.+|++.|.+++...+||+|+ +| +++|+||..|+.+.+.... ..+.+
T Consensus 202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~~~~--- 264 (321)
T PRK11543 202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------ALTTP--- 264 (321)
T ss_pred HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------CcCCc---
Confidence 47777 999999999999999999999999999983 46 8999999999998664311 01111
Q ss_pred ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.++|.+++.++.+++++.+|++.|.++++..+||+
T Consensus 265 ---------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 300 (321)
T PRK11543 265 ---------VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVV 300 (321)
T ss_pred ---------HHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 223456789999999999999999999999999997
No 139
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.77 E-value=7.1e-08 Score=78.27 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=75.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++++++++.+|+..|.+++.+++||+|+ +| +++|+++..|++++..... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~------ 61 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKKVFN------ 61 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCcHHH------
Confidence 4678999999999999999999999999983 36 8999999999997654211 01222222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|.+++.++.+++++.+|++.|.++++..+||+
T Consensus 62 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 94 (111)
T cd04626 62 ------IVSQDVFYVNEEDTIDEALDIMREKQIGRLPVV 94 (111)
T ss_pred ------HhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEe
Confidence 234688999999999999999999999999996
No 140
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.76 E-value=9e-08 Score=77.34 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=75.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.+|++.|.+++.+.+||+|+ | +++|+++.+|+++++..... .. ..++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~-----~~v~~~ 61 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ-----TPVGEV 61 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----cCHHHh
Confidence 4678999999999999999999999999972 6 89999999999988754221 11 223333
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|.++++++.+++++.++++.|.+.+.+.+||+
T Consensus 62 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv 93 (111)
T cd04611 62 -------MSSPLLTVPADTSLYDARQLMREHGIRHLVVV 93 (111)
T ss_pred -------cCCCceEECCCCCHHHHHHHHHHcCCeEEEEE
Confidence 34688999999999999999999999999986
No 141
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.76 E-value=7e-08 Score=79.14 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=77.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.+|+.+|.+.+..++||+|+ | +++|+++..|+++++......... .. ......+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~---- 68 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLDI-WE-LYYLLSKIK---- 68 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhcccccccc-hh-hhhhhcccC----
Confidence 4678999999999999999999999999982 6 899999999999887543221110 00 000001111
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.++|.+++.++.+++++.+++..|.+++.+.+||+
T Consensus 69 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 104 (122)
T cd04585 69 ---VSDIMTRDPITVSPDASVEEAAELMLERKISGLPVV 104 (122)
T ss_pred ---HHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEE
Confidence 233445788999999999999999999999999997
No 142
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.76 E-value=3.4e-08 Score=82.76 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=73.8
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.+++++.+|++.|.++++.++||+|+ +| +++|++|..|+++.+...... .+.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~-------- 60 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSDP-------- 60 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCCc--------
Confidence 35789999999999999999999999999983 35 799999999999877643211 1112
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHH---------hCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~---------~~~is~lPV~ 378 (384)
++++|.+++.++.+++++.+|.++|. +.+..++||+
T Consensus 61 ----v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 105 (124)
T cd04608 61 ----VSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK 105 (124)
T ss_pred ----HHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccc
Confidence 33445689999999999999999653 3366777765
No 143
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=4.8e-08 Score=80.54 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=76.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|++.|.+++.+++||+|+ +| +++|+++..|+++......... ...........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~---~~~~~~~~~~~----- 67 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVE---DQQRTQTKASP----- 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhcccccccc---chhhhhhhccC-----
Confidence 5788999999999999999999999999983 36 8999999999998643211000 00000000011
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.+.++|.+++.++.+++++.++++.|.+++.+++||+
T Consensus 68 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 104 (122)
T cd04635 68 --TVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVV 104 (122)
T ss_pred --cHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEE
Confidence 1223445688999999999999999999999999996
No 144
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.74 E-value=1.2e-07 Score=76.42 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=73.3
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++++++++.+|+..|.+++..++||+|+ +| +++|+++..|+++..... .++ ..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~------------~~v-----~~~ 59 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKEA------------KSL-----EDI 59 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhcC------------CcH-----hHh
Confidence 4678999999999999999999999999983 36 899999999998865211 111 122
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|.....++.+++++.+|+..|.+++.+++||+
T Consensus 60 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv 91 (109)
T cd04583 60 -------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVV 91 (109)
T ss_pred -------hcCCceEECCCCcHHHHHHHHHHcCCceeeEE
Confidence 23577899999999999999999999999996
No 145
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=1.2e-07 Score=76.97 Aligned_cols=94 Identities=16% Similarity=0.299 Sum_probs=74.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
.+.++.+++++.+|++.|.+++.+.++|.+ + | +++|++|.+|+++++...... ....++. +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~-----~- 62 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME---R-G---ELVGLLTFREVLQAMAQHGAG------VLDTTVR-----A- 62 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHHHHHHHhcCCc------hhcCCHH-----H-
Confidence 367899999999999999988988888775 2 6 899999999999987642111 0111222 2
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|..++.++.+++++.+|+++|.+++..++||+
T Consensus 63 ------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv 95 (112)
T cd04625 63 ------IMNPEPIVASPDDSIDEVRRLMVERHLRYLPVL 95 (112)
T ss_pred ------HhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEE
Confidence 234578899999999999999999999999996
No 146
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.74 E-value=1e-07 Score=77.44 Aligned_cols=94 Identities=9% Similarity=0.116 Sum_probs=74.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+..++.+++++.+|++.|.+++.+++||+|+ +| +++|++|..|+++.+.... . +.+.++ .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-~------~~~~~i-----~~~ 63 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-E------LKDAKV-----REV 63 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-h------hcCCcH-----HHh
Confidence 3578899999999999999999999999984 35 7999999999998654321 0 111122 222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|..++.++.+++++.++++.|.+++.+.+||+
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 95 (113)
T cd04615 64 -------MNSPVITIDANDSIAKARWLMSNNNISRLPVL 95 (113)
T ss_pred -------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEE
Confidence 34578999999999999999999999999986
No 147
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.5e-07 Score=95.32 Aligned_cols=131 Identities=21% Similarity=0.337 Sum_probs=108.1
Q ss_pred HHHHHHHHhhh--hccccccCCCCCcEEEEecCccHHHHHHHHHH-----cCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718 143 LSRDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (384)
Q Consensus 143 ~~~~~~~~~l~--~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~-----~~i~~lPV~D~~~~~~vGilT~~Dli~~l~ 215 (384)
.++..++..++ ..++..+| ..+.+++..+.|+.+|+..+++ ..+..+.|+|. +++++|++|.++++..
T Consensus 118 ~~r~~v~~~l~y~e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a-- 192 (451)
T COG2239 118 EERARVRQLLSYPEDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTA-- 192 (451)
T ss_pred HHHHHHHHhcCCChhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcC--
Confidence 56777777775 78899999 6799999999999999999994 45688999996 6799999999999621
Q ss_pred HhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCC
Q 016718 216 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG 295 (384)
Q Consensus 216 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g 295 (384)
++ .+ .+++ +|...++++.+++...+++++|.+|++-.+||+|+ ++
T Consensus 193 ----~~----~~--------~i~~----------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~~ 237 (451)
T COG2239 193 ----EP----DE--------LLKD----------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---DN 237 (451)
T ss_pred ----Cc----Hh--------HHHH----------------HhcccceeecccCCHHHHHHHHHHhCCeecceECC---CC
Confidence 10 00 1122 25667999999999999999999999999999984 46
Q ss_pred CcccEEEEeeHHHHHHHHHhh
Q 016718 296 SCQEILYLASLSDILKCICRH 316 (384)
Q Consensus 296 ~~~~lvGiit~~dil~~l~~~ 316 (384)
+++|+||..|++..+-..
T Consensus 238 ---~LiG~itiDDiidvi~eE 255 (451)
T COG2239 238 ---RLIGIITIDDIIDVIEEE 255 (451)
T ss_pred ---ceeeeeeHHHHHHHHHHH
Confidence 899999999999988754
No 148
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=9.8e-08 Score=79.69 Aligned_cols=106 Identities=12% Similarity=0.226 Sum_probs=77.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCC-CCc-ccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS-SSL-PILQQPVSSIQLG 337 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~-~~~-~~~~~~v~~l~ig 337 (384)
+++++.+++++.+|+++|.+.+++.+||+|+ +| +++|++|..|+++++........ ... ....+ ..+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 72 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKER-MLDLP-- 72 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhh-hccCc--
Confidence 4678999999999999999999999999984 36 89999999999987643210000 000 00000 00011
Q ss_pred ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
+..+|.++++++.+++++.+|++.|.++++..+||+.
T Consensus 73 -----~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 73 -----VYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred -----HHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 2234457899999999999999999999999999874
No 149
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.74 E-value=5.1e-08 Score=92.64 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCCC-ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccc
Q 016718 256 PCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (384)
Q Consensus 256 ~m~~~-~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l 334 (384)
+|.++ +.++.+++++.+|++.|.+.++.++||+|+ +| +++|++|..|+++++.... ..+.++.
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~-- 223 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSEVR-- 223 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCcHH--
Confidence 47777 899999999999999999999999999983 36 8999999999998654211 0122222
Q ss_pred cccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 335 ~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++|.+++.++.+++++.+|+++|.++++..+||+
T Consensus 224 ----------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 257 (268)
T TIGR00393 224 ----------DFMTLGPKTFKLDALLLEALEFLERRKITSLVVV 257 (268)
T ss_pred ----------HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEE
Confidence 3345788999999999999999999999999996
No 150
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.74 E-value=1.4e-07 Score=76.59 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=74.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++++++++.+|+..|.+++...+||+| + | +++|+++..|+++++...-. .... .+.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~-----~i~~~ 62 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSST-----PVGEI 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCC-----CHHHH
Confidence 457899999999999999999999999997 3 5 79999999999987643110 0111 22223
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|.+++.++.+++++.++++.|.+++...+||+
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 94 (111)
T cd04589 63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVR 94 (111)
T ss_pred -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEe
Confidence 34688999999999999999999999999996
No 151
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.73 E-value=9.7e-08 Score=77.53 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=75.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.++++.|.+.+..++||+|+ +| +++|+++..++++.+...... ... .++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~-----~v~~~ 64 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTL-----PVADV 64 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccC-----CHHHh
Confidence 3567899999999999999889999999984 36 899999999999987643211 011 23333
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|..++.++.+++++.++++.|.+++...+||+
T Consensus 65 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv 96 (114)
T cd04604 65 -------MTRNPKTIDPDALAAEALELMEENKITALPVV 96 (114)
T ss_pred -------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence 34678899999999999999999999999996
No 152
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.72 E-value=1.7e-07 Score=96.23 Aligned_cols=140 Identities=11% Similarity=0.082 Sum_probs=99.1
Q ss_pred CeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeC
Q 016718 189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 265 (384)
Q Consensus 189 ~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~ 265 (384)
-.+|++-+ ....||..++...|.+...-+ .++. ...+.+..+.+. ...+|.++++++.
T Consensus 43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-------v~~iMi~~pvtv~ 103 (479)
T PRK07807 43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-------SRDLVFDTPVTLS 103 (479)
T ss_pred cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-------cccccccCCeEEC
Confidence 34788864 234588888887776554110 1221 112222222221 1125788999999
Q ss_pred CCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccccccccc
Q 016718 266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 345 (384)
Q Consensus 266 ~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~ 345 (384)
+++++.+|+++|.++++..+||+|+ ++ +++||||.+|+... .. ..++. +
T Consensus 104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~-----~~--------~~~V~------------d 152 (479)
T PRK07807 104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV-----DR--------FTQVR------------D 152 (479)
T ss_pred CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC-----cc--------CCCHH------------H
Confidence 9999999999999999999999983 46 89999999998321 00 11222 3
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 346 ANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 346 ~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|.++++++++++++.+|+++|.++++..+||+
T Consensus 153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVV 185 (479)
T PRK07807 153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVV 185 (479)
T ss_pred hccCCceEECCCCcHHHHHHHHHhcCCCEEEEE
Confidence 345789999999999999999999999999997
No 153
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.71 E-value=1.3e-07 Score=77.14 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=71.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcC-CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~-i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
+++++.+++++.+|++.|.+++ ...+||.| + | +++|+++..|+++++..... ..+.++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i-----~~ 62 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE---K-G---RLLGIFTERDIVRLTAIGKD-------LSDLPI-----GE 62 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC---C-C---cEEEEEeHHHHHHHHhcCCC-------ccccCH-----HH
Confidence 4568899999999999999888 66777776 2 5 89999999999987653211 011122 22
Q ss_pred cccccccCCCCCceEeCCC--CCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d--~~v~~a~~~m~~~~is~lPV~ 378 (384)
. |.+++.++.++ +++.+|+++|.+++.+.+||+
T Consensus 63 ~-------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv 97 (115)
T cd04620 63 V-------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVL 97 (115)
T ss_pred h-------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEE
Confidence 2 34578899887 799999999999999999997
No 154
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.71 E-value=1.5e-07 Score=80.72 Aligned_cols=110 Identities=21% Similarity=0.382 Sum_probs=81.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccC----CCCcccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS----SSSLPILQQPVSSIQ 335 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~----~~~~~~~~~~v~~l~ 335 (384)
+++++++++++.++++.|.++++..+||+| + | +++|++|..|+++++....... ++....+..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 567999999999999999999999999998 2 5 8999999999999876432100 00011222333221
Q ss_pred cccc-----------ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 336 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 336 ig~~-----------~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
..| ...+.++|.+++.++.+++++.+|+..|.+++.+++||+
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv 126 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVV 126 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence 111 012345667889999999999999999999999999997
No 155
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.70 E-value=1.6e-07 Score=75.82 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=74.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+++..|.+.+.+++||+| + | +++|+++..|+++........ ++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------------~~~~~-- 59 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA-------------TVLVG-- 59 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc-------------ccCHH--
Confidence 567899999999999999999999999998 3 5 899999999999866432100 01111
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
..|.+++.++.+++++.++++.|.+++.+++||+
T Consensus 60 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~ 93 (111)
T cd04612 60 -----DVMTRDPVTASPDETLRDALKRMAERDIGRLPVV 93 (111)
T ss_pred -----HhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEE
Confidence 2234688999999999999999999999999996
No 156
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.68 E-value=2.3e-07 Score=75.22 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=73.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH-HHHhhcccCCCCccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~-~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
+++++.+++++.+|++.|.+++.+.+||+| + | +++|++|..|++. .+..... ....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~~-------~~~~~~~------ 61 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGRD-------PDTTTVG------ 61 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccCC-------cccCCHH------
Confidence 567899999999999999999999999997 3 6 8999999999974 3322110 0111122
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++|.+...++.+++++.++++.|.+.+.+++||+
T Consensus 62 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~ 95 (113)
T cd04622 62 ------DVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVV 95 (113)
T ss_pred ------HhccCCccEECCCCCHHHHHHHHHHcCCCeeeEE
Confidence 2234678899999999999999999999999986
No 157
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.67 E-value=2.8e-07 Score=73.60 Aligned_cols=94 Identities=17% Similarity=0.340 Sum_probs=76.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.++++.|.+++.+++||+|. ++ +++|+++.+|+++.+......... .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~------------~~~-- 61 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPLV------------TVG-- 61 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCccc------------cHH--
Confidence 4678999999999999999999999999983 35 899999999999988754322100 011
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.|..+..++.+++++.+|++.|.+.+.+.+||+
T Consensus 62 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 95 (113)
T cd02205 62 -----DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95 (113)
T ss_pred -----HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEE
Confidence 2234578899999999999999999999999986
No 158
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.67 E-value=9.4e-08 Score=73.66 Aligned_cols=70 Identities=33% Similarity=0.527 Sum_probs=58.4
Q ss_pred eEEEEEeeC-CCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcCEeecCCCCCeeeCC
Q 016718 21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGN 92 (384)
Q Consensus 21 ~~v~f~w~~-~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~-G~y~YkFiVDG~w~~d~~~p~~~d~ 92 (384)
..++|++.. .+++|.|.++|++|....+|.+.. +|.|++.+.+.. +.|.|+|.|+|.|.+++.++...+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~ 75 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG 75 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence 467888766 579999999999976678998764 699999999988 9999999999999988887554443
No 159
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.66 E-value=1.3e-07 Score=76.44 Aligned_cols=89 Identities=8% Similarity=0.099 Sum_probs=73.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++.+++++.+|+..|.+++.+.+||+|+ +| +++|+++..|++.+. . +.++. ++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~--------~~~v~-----~~ 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-----P--------DTTIE-----KV 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-----c--------cccHH-----HH
Confidence 5789999999999999999999999999983 46 899999999997531 0 11222 22
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
|..++.++.+++++.+|+++|.+++...+||+-
T Consensus 59 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 91 (108)
T cd04596 59 -------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVD 91 (108)
T ss_pred -------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 235788999999999999999999999999973
No 160
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.65 E-value=2.2e-07 Score=76.33 Aligned_cols=103 Identities=13% Similarity=0.212 Sum_probs=76.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
++.++++++++.+|+..|.+.+..++||+|+ +| +++|+++..++++.....+..... ... .......
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~-~~~--~~~~~~~---- 68 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLSE-HEL--YLLLKMP---- 68 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccchh-hhh--hhhcCcC----
Confidence 5678999999999999999999999999984 36 899999999999876543221100 000 0000011
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+.+.|..+++++.+++++.+++++|.+++.+++||+
T Consensus 69 ---v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~ 104 (121)
T cd04584 69 ---VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVV 104 (121)
T ss_pred ---HHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEe
Confidence 122345688999999999999999999999999996
No 161
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.63 E-value=2.3e-07 Score=74.27 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=71.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.++++.|.+++.+.+||+|+ | +++|+++..|++++.. +.++. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~~-------------~~~~~-----~- 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAHP-------------NRLVA-----D- 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhcccc-------------cCCHH-----H-
Confidence 5678999999999999999999999999972 5 8999999999986320 11111 2
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|.+++.++.+++++.+|++.|.+++.+++||+
T Consensus 56 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 88 (105)
T cd04599 56 ------AMTREVVTISPEASLLEAKRLMEEKKIERLPVL 88 (105)
T ss_pred ------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEE
Confidence 234578899999999999999999999999996
No 162
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.60 E-value=3.5e-07 Score=74.08 Aligned_cols=67 Identities=27% Similarity=0.538 Sum_probs=50.6
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEec--------CCc-eEEEEEEE-cCEe--ecCCCCC
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP 87 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~G-~y~YkFiV-DG~w--~~d~~~p 87 (384)
.++|+ |...|++|+|+|+||+|++. .+|.+.+ .|.|+++++. +.| .|.|++.. ||+| +.||-..
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 46777 66689999999999999874 6899864 8999999874 455 47777766 7876 5777655
Q ss_pred eee
Q 016718 88 HVS 90 (384)
Q Consensus 88 ~~~ 90 (384)
.+.
T Consensus 84 ~~~ 86 (99)
T cd02854 84 YVT 86 (99)
T ss_pred EEE
Confidence 433
No 163
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=2.1e-07 Score=77.73 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=70.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh-cccCCCCccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~-~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
+++++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..|+.+..... ... . +......++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-~-~~~~~~~~v~~----- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQE-G-GISRSELTVAD----- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHH-c-CCCchheEHHH-----
Confidence 4678999999999999999999999999983 36 899999999999743110 000 0 00011222222
Q ss_pred cccccccCCCCCc--eEe----CCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPF--AML----RPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v--~tv----~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|.++. +.+ .+++++.+|++.|.+++++.+||+
T Consensus 69 -------im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv 107 (126)
T cd04640 69 -------VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVV 107 (126)
T ss_pred -------hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEE
Confidence 223333 233 378999999999999999999996
No 164
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.60 E-value=4.6e-07 Score=93.64 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=98.2
Q ss_pred eeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCC
Q 016718 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266 (384)
Q Consensus 190 ~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~ 266 (384)
.+|++.+. .+.+|..++..++.+....+ .+.+.++. .+..+.+. +. ...|..+++++.+
T Consensus 41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~--------~~~I~~vk--~~----~dim~~~~v~i~~ 102 (486)
T PRK05567 41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQ--------AEEVRKVK--RS----ESGVVTDPVTVTP 102 (486)
T ss_pred CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHH--------HHHHHHhh--hh----hhcccCCCeEeCC
Confidence 48998752 24478999888776544321 11221211 11111111 00 1146789999999
Q ss_pred CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccC
Q 016718 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 346 (384)
Q Consensus 267 ~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~ 346 (384)
++++.+|+++|.++++.++||+|+ ++ +++|+||.+|+.... . .+.++. + +
T Consensus 103 ~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~~V~-----d-------i 152 (486)
T PRK05567 103 DTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQPVS-----E-------V 152 (486)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCCcHH-----H-------H
Confidence 999999999999999999999983 36 899999999996421 1 112222 2 2
Q ss_pred CC-CCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 347 NG-RPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 347 ~~-~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|. ++++++.+++++.+|++.|.+++++.+||+
T Consensus 153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVV 185 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVV 185 (486)
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 33 589999999999999999999999999997
No 165
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.60 E-value=4.8e-07 Score=73.39 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=72.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCC--CCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP--AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~--~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig 337 (384)
.+..+.+++++.++...|.+++..++||+|+ + +| +++|+++.+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~~---~~~G~v~~~dl~~~~~~---------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDS--TEESP---RLVGYILRSQLVVALKN---------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcC--CCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence 4678899999999999999999999999983 2 36 89999999999877642
Q ss_pred ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ |.+++.++.+++++.++++.|.+++++.+||+
T Consensus 56 -~-------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv 88 (105)
T cd04591 56 -Y-------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVV 88 (105)
T ss_pred -h-------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEE
Confidence 1 12467899999999999999999999999997
No 166
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.59 E-value=3.5e-07 Score=93.78 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=98.1
Q ss_pred eeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCC
Q 016718 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266 (384)
Q Consensus 190 ~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~ 266 (384)
.+|++.+. .-.||+..+..++.+...-+ .++ ++..|.+..+.+. ....|.++++++.+
T Consensus 43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-------v~eim~~~pvtv~p 103 (475)
T TIGR01303 43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-------SRDLVLDTPITLAP 103 (475)
T ss_pred ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-------hhhccccCCeEECC
Confidence 57888652 23488888877776554211 122 2333333332221 11246788899999
Q ss_pred CCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccC
Q 016718 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 346 (384)
Q Consensus 267 ~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~ 346 (384)
++++.+|+.+|.+++++.+||+|+ + +++||||.+|+... . ...++ .++
T Consensus 104 ~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------~-------~~~~V------------~dI 151 (475)
T TIGR01303 104 HDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------D-------RFTQV------------RDI 151 (475)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------C-------CCCCH------------HHH
Confidence 999999999999999999999972 5 89999999998311 0 01122 233
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 347 NGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 347 ~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|+++++++.+++++.+|+++|.+++++.+||+
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVV 183 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLV 183 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 45789999999999999999999999999997
No 167
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.59 E-value=9.1e-07 Score=85.89 Aligned_cols=131 Identities=21% Similarity=0.295 Sum_probs=109.9
Q ss_pred hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (384)
Q Consensus 153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~ 232 (384)
...|+.|+|.--..+..++.++|.++.++.+...-...+|||-.+-++++||+-.+|+++.+.+... +..++
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d---- 269 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKED---- 269 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhH----
Confidence 5789999998889999999999999999999999999999997667789999999999888764321 11111
Q ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+..+ -.+++.|+..++|.+-+..|.+++-|---|+|+ -| .+.|++|.+||++.
T Consensus 270 ----~~~~-----------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEE 322 (423)
T COG4536 270 ----ILRA-----------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEE 322 (423)
T ss_pred ----HHHH-----------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHH
Confidence 1111 245688999999999999999999999999983 47 79999999999999
Q ss_pred HHhhcc
Q 016718 313 ICRHFK 318 (384)
Q Consensus 313 l~~~~~ 318 (384)
+...+.
T Consensus 323 IVGdft 328 (423)
T COG4536 323 IVGDFT 328 (423)
T ss_pred Hhcccc
Confidence 998776
No 168
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.59 E-value=2e-07 Score=98.35 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=80.1
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (384)
+|++++.++++++++.++++.|.+++.+.+||+|+ +| +++|+||.+|+.+.+..... ..+.+
T Consensus 452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~----- 513 (574)
T PRK01862 452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRD-------TTDKT----- 513 (574)
T ss_pred HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhcccc-------cccch-----
Confidence 57888899999999999999999999999999983 46 89999999999986643210 00111
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+ .++|.+++.++++++++.+|+++|.+++++.+||+
T Consensus 514 v-------~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVV 549 (574)
T PRK01862 514 A-------ADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVV 549 (574)
T ss_pred H-------HHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeE
Confidence 2 23345788999999999999999999999999997
No 169
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.56 E-value=2.1e-07 Score=96.09 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=72.7
Q ss_pred eEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccccc
Q 016718 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (384)
Q Consensus 262 itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~ 341 (384)
.+++|++++.+|+.+|.++++..+||+|+..++| +|+||||..|+... .. ..+.++.+ .
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~~------~~~~~V~d-----I-- 166 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----RM------SLDTKVKD-----F-- 166 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----cc------CCCCCHHH-----H--
Confidence 5999999999999999999999999998311136 89999999998531 00 12233333 2
Q ss_pred ccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 342 RIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 342 ~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|++ +++++.+++++.+|+++|.+++++.|||+
T Consensus 167 -----Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVV 200 (502)
T PRK07107 167 -----MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIV 200 (502)
T ss_pred -----hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence 333 78999999999999999999999999997
No 170
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.55 E-value=6e-07 Score=72.23 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=69.7
Q ss_pred eEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccccc
Q 016718 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (384)
Q Consensus 262 itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~ 341 (384)
+++.+++++.+|+..|.+.+..++||+| + | +++|+++..|++++.. .++. +
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~-----~--- 54 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVV-----D--- 54 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchh-----h---
Confidence 4789999999999999999999999998 3 6 8999999999986321 0111 1
Q ss_pred ccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 342 RIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 342 ~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|..+..++.+++++.+|++.|.+++.+.+||+
T Consensus 55 ----~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv 87 (104)
T cd04594 55 ----YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVV 87 (104)
T ss_pred ----hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEE
Confidence 123467899999999999999999999999997
No 171
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.54 E-value=6.2e-07 Score=72.13 Aligned_cols=91 Identities=18% Similarity=0.328 Sum_probs=70.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|+..|.+++++++||+| + | +++|++|..|+.+++...... .+.+ +++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~-----~~~- 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLP-----VRE- 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcC-----HHH-
Confidence 467899999999999999999999999997 3 5 899999999999987643211 0111 222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|.+++.++.+++++.+|+++|.+ . ..+||+
T Consensus 62 ------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv 92 (110)
T cd04609 62 ------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVV 92 (110)
T ss_pred ------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEE
Confidence 234578899999999999999988 3 235654
No 172
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.53 E-value=3.6e-07 Score=94.43 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=76.3
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (384)
Q Consensus 257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (384)
|.+++++++|++++.+|+++|.++++..+||+|+...+| +++|+||.+|+.... . .+.++.++
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~-----~-------~~~~V~eI-- 168 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN-----D-------RETKLSEV-- 168 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc-----c-------cCCcHHHH--
Confidence 568889999999999999999999999999998310135 899999999995421 0 12233332
Q ss_pred cccccccccCCCCC--ceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 337 g~~~~~v~~~~~~~--v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|.++ ++++.+++++.+|+++|.+++++.+||+
T Consensus 169 ----------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVV 202 (505)
T PLN02274 169 ----------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLV 202 (505)
T ss_pred ----------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 2334 8999999999999999999999999998
No 173
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=9.4e-07 Score=70.88 Aligned_cols=88 Identities=15% Similarity=0.286 Sum_probs=71.8
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.++.++.+++..|.+++..++||+| + + +++|+++..|+++. .. +.++ ++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~-----~~--------~~~~-----~~ 56 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK-----DP--------DETV-----EE 56 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc-----Cc--------cccH-----HH
Confidence 4678899999999999999999989999997 3 5 89999999999752 00 1112 22
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.|..++.++.+++++.+|+++|.+++.+.+||+
T Consensus 57 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 89 (107)
T cd04610 57 -------IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVV 89 (107)
T ss_pred -------hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEE
Confidence 234577899999999999999999999999986
No 174
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.49 E-value=9.3e-07 Score=72.24 Aligned_cols=92 Identities=13% Similarity=0.109 Sum_probs=69.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++++.+++++.+|++.|.++++..+||+|+...+| +++|+++..|++.... . ..++. +
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~----~--------~~~v~-----~- 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD----S--------ETPLS-----E- 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc----c--------CCCHH-----H-
Confidence 467889999999999999999999999998311136 8999999999864311 0 01122 2
Q ss_pred ccccccCCCCCceEeCC--CCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRP--TASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~--d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|.++..++.. ++++.+|++.|.++++..+||+
T Consensus 62 ------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv 96 (114)
T cd04602 62 ------VMTPREVLVVAPTGITLEEANEILRESKKGKLPIV 96 (114)
T ss_pred ------hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEE
Confidence 22345566655 9999999999999999999997
No 175
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.47 E-value=7e-07 Score=92.21 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=75.9
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (384)
Q Consensus 257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (384)
|..++++++|++++.+|+.+|.++++..+||+|+...++ +++||||.+|+... .. .+.++.
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~~-----~~-------~~~~V~---- 162 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDFV-----KD-------KSTPVS---- 162 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhhc-----cc-------CCCCHH----
Confidence 567789999999999999999999999999998411125 89999999998621 01 112222
Q ss_pred cccccccccCCCC--CceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 337 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 337 g~~~~~v~~~~~~--~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+. |.+ +++++.+++++.+|+++|.++++..+||+
T Consensus 163 -di-------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVV 198 (495)
T PTZ00314 163 -EV-------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIV 198 (495)
T ss_pred -Hh-------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 33 344 78999999999999999999999999997
No 176
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.45 E-value=7.3e-07 Score=86.17 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=76.7
Q ss_pred CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718 256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (384)
Q Consensus 256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~ 333 (384)
+|+. +++++.+++++.+++..+.+++..|+||+++ +.+ +++|+|+.+|+++++..... ..
T Consensus 72 iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~~---------~~---- 133 (292)
T PRK15094 72 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDAE---------AF---- 133 (292)
T ss_pred EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccCC---------cC----
Confidence 5665 6999999999999999999999999999974 224 79999999999976532110 01
Q ss_pred ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.+.+.+ ++++++.+++++.+|++.|.+++...+||+
T Consensus 134 -~l~~l~--------r~~~~V~e~~~l~~~L~~m~~~~~~~a~Vv 169 (292)
T PRK15094 134 -SMDKVL--------RQAVVVPESKRVDRMLKEFRSQRYHMAIVI 169 (292)
T ss_pred -CHHHHc--------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEE
Confidence 122233 356699999999999999999999999997
No 177
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.44 E-value=9.2e-07 Score=90.51 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=98.2
Q ss_pred CeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCC
Q 016718 189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268 (384)
Q Consensus 189 ~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~ 268 (384)
...|++.+. ...+|+.++..++......+ .+. . ..++....+..+.+. +.. ..|.++++++.+++
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~G-vI~-~---n~~~e~q~~~V~~Vk--~~~----~~~~~~~vtl~~~~ 97 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIG-VIH-R---NMSIEEQAEQVKRVK--RAE----NGIISDPVTISPET 97 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCc-eee-c---CCCHHHHHHHHhhhc--ccc----CceecCceEeCCCC
Confidence 457888642 23479999877776544321 010 0 011111122111111 111 13677899999999
Q ss_pred CHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccccccCCC
Q 016718 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG 348 (384)
Q Consensus 269 ~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~v~~~~~ 348 (384)
++.+|+++|.+++++++||+|++...+ +++|+||.+|++... . .+.++ .+. |.
T Consensus 98 tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V-----~dv-------m~ 150 (450)
T TIGR01302 98 TVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPV-----SEV-------MT 150 (450)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCH-----HHh-------hC
Confidence 999999999999999999998410014 799999999997421 1 01222 222 34
Q ss_pred -CCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 349 -RPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 349 -~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.+++++.+++++.+|+++|.++++..+||+
T Consensus 151 ~~~~~~V~~~~sl~eal~~m~~~~~~~lpVV 181 (450)
T TIGR01302 151 REEVITVPEGIDLEEALKVLHEHRIEKLPVV 181 (450)
T ss_pred CCCCEEECCCCcHHHHHHHHHHcCCCeEEEE
Confidence 389999999999999999999999999997
No 178
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.42 E-value=1.1e-06 Score=70.84 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=70.1
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++++++.+++++.+++..|.+++..++||+|+ +| +++|++|.+++++.. . .+.++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~v-----~~ 58 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKPV-----SE 58 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCCH-----HH
Confidence 35678999999999999999999999999984 36 899999999986421 0 01122 22
Q ss_pred cccccccCCCCCceEeCC-CCCHHHHHHHHHhCCCceeeecc
Q 016718 339 WVPRIGEANGRPFAMLRP-TASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~-d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
.+ ..+...+.+ ++++.+|+++|.+.+.+.+||+-
T Consensus 59 ~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 93 (110)
T cd04601 59 VM-------TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD 93 (110)
T ss_pred hc-------ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc
Confidence 22 234556666 99999999999999999999963
No 179
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.41 E-value=1.6e-06 Score=71.02 Aligned_cols=91 Identities=10% Similarity=0.193 Sum_probs=69.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcC-CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~-i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
++.++.+++++.+|++.|.+.+ .+.+||+| + | +++|+++..|+++++...+.. .... +..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~-----~~~~----~~~v~- 64 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGR-----ALYG----KKPVS- 64 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhH-----HHHc----CCcHH-
Confidence 5668899999999999998887 89999998 3 6 899999999999876542110 0000 11222
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT 373 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is 373 (384)
+.|..+..++.+++++.+|+..|.+++..
T Consensus 65 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 93 (119)
T cd04598 65 ------EVMDPDPLIVEADTPLEEVSRLATGRDSQ 93 (119)
T ss_pred ------HhcCCCcEEecCCCCHHHHHHHHHcCCcc
Confidence 33456889999999999999999999864
No 180
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.39 E-value=1.6e-06 Score=70.21 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=67.5
Q ss_pred EeCCCCCHHHHHHHHHhcC-----CCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccc
Q 016718 263 QAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (384)
Q Consensus 263 tv~~~~~l~~a~~~m~~~~-----i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig 337 (384)
++.+++++.++++.|.+++ +..+||+|+ +| +++|++|.+++++. . .+ ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------~-------~~-----~~v~ 56 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------D-------PD-----TPVS 56 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------Cc-----chHH
Confidence 3678999999999999877 578999973 35 79999999998751 0 01 1223
Q ss_pred ccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 338 ~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
++ +..+..++.+++++.++++.|.+++...+||+
T Consensus 57 ~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv 90 (109)
T cd04606 57 DI-------MDTDVISVSADDDQEEVARLFEKYDLLALPVV 90 (109)
T ss_pred HH-------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeE
Confidence 33 34578999999999999999999999999996
No 181
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.39 E-value=2.2e-06 Score=78.42 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=107.6
Q ss_pred hhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhh
Q 016718 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (384)
Q Consensus 153 ~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~ 232 (384)
...++.|+|-.-++.++++.+.++.+....+.+..-+.+||+.+++..+.|||-..||+..+.. +...+
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~---~~~~F-------- 133 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS---DAEPF-------- 133 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC---Ccccc--------
Confidence 4788999998888999999999999999999999999999998778899999999999876531 11111
Q ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
.+++ +-+|.+.|+....|...++-|..++-|-..|+|. - | -+-|+||..||++.
T Consensus 134 ---~i~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE--f-G---gVsGLVTIEDiLEq 187 (293)
T COG4535 134 ---DIKE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--F-G---GVSGLVTIEDILEQ 187 (293)
T ss_pred ---cHHH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEec--c-C---CeeeeEEHHHHHHH
Confidence 1122 2478889999999999999999999999999984 3 5 49999999999999
Q ss_pred HHhhcc
Q 016718 313 ICRHFK 318 (384)
Q Consensus 313 l~~~~~ 318 (384)
+.....
T Consensus 188 IVGdIE 193 (293)
T COG4535 188 IVGDIE 193 (293)
T ss_pred Hhcccc
Confidence 986543
No 182
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=4.1e-06 Score=84.35 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=85.3
Q ss_pred EEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhcccc
Q 016718 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR 248 (384)
Q Consensus 169 ~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 248 (384)
...++.+..+|++.|.+++...+.|+|. .++++|+|+..++...... . ..+ .+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~-~~~-------------~~~-------- 342 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ---Q-QGL-------------DAA-------- 342 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc---C-Cch-------------hhh--------
Confidence 3446678999999999999999999995 7899999999998644321 0 000 111
Q ss_pred ccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718 249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (384)
Q Consensus 249 ~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~ 316 (384)
+...+.++.++++|.+++..|.+.... +||+|+ +| +++|+||..++++.|...
T Consensus 343 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 --------LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQ---QYVGIISKGMLLRALDRE 395 (400)
T ss_pred --------hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CC---cEEEEEEHHHHHHHHHhc
Confidence 245577999999999999999997766 999983 46 899999999999999753
No 183
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.38 E-value=5.6e-06 Score=82.40 Aligned_cols=108 Identities=10% Similarity=0.210 Sum_probs=86.9
Q ss_pred EEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHhhccc
Q 016718 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247 (384)
Q Consensus 168 v~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 247 (384)
+...++.+..+|++.|..++...+.|+|. ++++.|+++..++..++... .. +.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~----~~-------------~~~-------- 306 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKKA----QG-------------LQD-------- 306 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhcC----Cc-------------hhh--------
Confidence 35566778999999999999999999995 68999999999886443211 00 011
Q ss_pred cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh
Q 016718 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (384)
Q Consensus 248 ~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~ 316 (384)
.+...+.++.++++|.+++.+|.+++.. +||+|. +| +++|+||..+++++|...
T Consensus 307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 307 --------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQ---RLVGIVTRGSLVDALYDS 360 (363)
T ss_pred --------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CC---cEEEEEEHHHHHHHHHhh
Confidence 1345677899999999999999999988 999983 46 899999999999999753
No 184
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.37 E-value=1.7e-06 Score=87.44 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=76.9
Q ss_pred CCCC--CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccc
Q 016718 256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (384)
Q Consensus 256 ~m~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~ 333 (384)
+|+. ++++++.++++.+++++|.+++..|+||.++ +.+ +++||++.+|++.++.. . .
T Consensus 196 iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d---~ivGiv~~kDll~~~~~---~-------------~ 254 (408)
T TIGR03520 196 VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TID---NITGVLYIKDLLPHLNK---K-------------N 254 (408)
T ss_pred eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCC---ceEEEEEHHHHHhHhcc---C-------------C
Confidence 5764 7999999999999999999999999999974 223 79999999999976431 0 0
Q ss_pred ccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 334 l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
..+...+ +++.+|++++++.++++.|.+++.+..+|+
T Consensus 255 ~~l~~~~--------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVv 291 (408)
T TIGR03520 255 FDWQSLL--------REPYFVPENKKLDDLLRDFQEKKNHLAIVV 291 (408)
T ss_pred CCHHHHc--------CCCeEeCCCCcHHHHHHHHHhcCceEEEEE
Confidence 1223333 477899999999999999999999999886
No 185
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.34 E-value=2.8e-06 Score=89.08 Aligned_cols=54 Identities=31% Similarity=0.367 Sum_probs=49.2
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHh
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR 315 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~ 315 (384)
+|.++++++++++++.+|+++|.+++++++||+|+ +| +++|+||..|+.+.+..
T Consensus 73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMD 126 (546)
T ss_pred hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHh
Confidence 47889999999999999999999999999999983 36 89999999999997765
No 186
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.6e-06 Score=88.73 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=107.1
Q ss_pred HhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCC----CeEEEEeehHHHHHHHHHhcc--C-CC
Q 016718 150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK----GRFVGVLSALDFILILRELGT--N-GS 222 (384)
Q Consensus 150 ~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~----~~~vGilT~~Dli~~l~~~~~--~-~~ 222 (384)
..|++.++.|+| +.+|+++..-..+...+++|....-.++||+|... +++.|+|-++-++..|+.... + +.
T Consensus 577 ~~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 577 PYMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hHhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 456789999999 77999999999999999999999999999999532 478899999998877653221 1 11
Q ss_pred CC--------Chhhhhhh--hHHHH---HHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEe
Q 016718 223 NL--------TEEELETH--TISAW---KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIH 289 (384)
Q Consensus 223 ~~--------~~~~l~~~--~i~~~---~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd 289 (384)
.. ..+|+.+. .+++. .+.+..+ .|-. ..|...+++|.+++|+..+..+|.+-|++++-|++
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~y-----vDl~-p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~ 728 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMY-----VDLH-PFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP 728 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhc-----cccc-cccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence 11 11111110 01100 0000000 1111 24777789999999999999999999999999998
Q ss_pred cCCCCCCcccEEEEeeHHHHHHHH
Q 016718 290 STGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 290 ~~~~~g~~~~lvGiit~~dil~~l 313 (384)
. . . +++||+|++|+.++=
T Consensus 729 ~--~-~---~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 729 K--T-N---RVVGILTRKDLARYR 746 (762)
T ss_pred C--C-C---ceeEEEehhhhhhHH
Confidence 4 3 3 689999999999774
No 187
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.29 E-value=5e-07 Score=70.62 Aligned_cols=58 Identities=31% Similarity=0.645 Sum_probs=45.1
Q ss_pred eEEEEE-eeCCCceEEEEecCCC-CCCC-CCCCCCCCCCCeEEEEEe--cCCceEEEEEEEcCE
Q 016718 21 VPVRFI-WPNGGRRVSLSGSFTR-WSEP-MPMSPSEGCPAVFQIICR--LPPGHHQYKFYVDGE 79 (384)
Q Consensus 21 ~~v~f~-w~~~~~~V~v~GsF~~-W~~~-~~m~~~~~~~~~~~~~~~--L~~G~y~YkFiVDG~ 79 (384)
..++|+ |...|++|.|++.|++ |... ++|++. ..+|.|++++. +++|.++|+|.|+|.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 467777 5668999999999999 8754 689841 23899999998 898988888888754
No 188
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.27 E-value=4.9e-06 Score=85.21 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=72.9
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (384)
+|.+++.++.+++++.++++.|.++++.++||+|+ ++ +++|+||..|+++.+..... ..+.++.
T Consensus 340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~--- 403 (454)
T TIGR01137 340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDDAVS--- 403 (454)
T ss_pred hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCCCHH---
Confidence 58889999999999999999999999999999983 35 89999999999997754211 0111222
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCC
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGD 371 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~ 371 (384)
++|++++.++++++++.+++++|.+++
T Consensus 404 ---------~im~~~~~~v~~~~~l~~a~~~~~~~~ 430 (454)
T TIGR01137 404 ---------KVMSKKFIQIGEGEKLSDLSKFLEKNS 430 (454)
T ss_pred ---------HhcCCCCeEECCcCcHHHHHHHHHHCC
Confidence 234568889999999999999998864
No 189
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=1.6e-05 Score=63.72 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=71.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
.+.++.+++++.+++..|.+.+..++||+|+ ++ +++|+++..++++.. . ..++. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~-----~--------~~~~~-----~~ 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP-----E--------EEQLA-----LL 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc-----c--------cchHH-----HH
Confidence 4678999999999999999999999999983 35 899999999997521 0 01111 11
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
|.++..++.+++++.+++..|.+++.+.+||+
T Consensus 58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 89 (106)
T cd04638 58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVV 89 (106)
T ss_pred -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 23578899999999999999999999999996
No 190
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.19 E-value=6.1e-06 Score=84.51 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=75.9
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHh-----cCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccc
Q 016718 255 RPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 329 (384)
Q Consensus 255 ~~m~~~~itv~~~~~l~~a~~~m~~-----~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~ 329 (384)
.+|+++++++++++++.+|++.|.+ +++..++|+|+ ++ +++|+++.+|++.. . + +.
T Consensus 135 ~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~-~------~~ 195 (449)
T TIGR00400 135 RIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K-P------EE 195 (449)
T ss_pred HhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C-C------CC
Confidence 3689999999999999999999976 56778999973 35 89999999999742 1 0 11
Q ss_pred ccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 330 ~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
.++++ |.++++++++++++.+|++.|.++++.++||+
T Consensus 196 -----~v~~i-------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV 232 (449)
T TIGR00400 196 -----ILSSI-------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV 232 (449)
T ss_pred -----cHHHH-------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence 23333 45678999999999999999999999999997
No 191
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.01 E-value=1.5e-05 Score=78.29 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=87.3
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCC--CCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (384)
..+++.|+.++.+++++...+++..+||.... ..+++|+||.+|+- .+ ..+. .+ +.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~---~~~~-~~------------~~~---- 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FL---EDNS-LL------------VSD---- 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hh---hccc-ch------------hhh----
Confidence 56789999999999999999999999998532 46999999999962 22 1110 00 111
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~ 312 (384)
+|+...++...+.+|.++=++|.+++-..+||+|+ +| +||.||+..|+.|.
T Consensus 176 ------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~g---elva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 ------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KG---ELVAMLSRTDLMKN 226 (503)
T ss_pred ------------hcccccccccccccHHHHHHHHHhhhcCCcceecc---CC---ceeeeeehhhhhhh
Confidence 35666699999999999999999999999999984 46 89999999999886
No 192
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.98 E-value=1.3e-05 Score=66.03 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=48.7
Q ss_pred ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHH
Q 016718 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (384)
Q Consensus 155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli 211 (384)
.++.|+| ..++.++.+++++.+|+++|.++++..+||+|. +++++|+||..|+.
T Consensus 58 ~~v~dim--~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVI--NRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhc--CCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhh
Confidence 6788999 446789999999999999999999999999995 68999999999985
No 193
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.00022 Score=74.92 Aligned_cols=138 Identities=23% Similarity=0.324 Sum_probs=78.8
Q ss_pred eeEEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE-----eecCCCCCeeeC
Q 016718 20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSG 91 (384)
Q Consensus 20 ~~~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~-----w~~d~~~p~~~d 91 (384)
...++|+ |...++.|.|.|+||+|+.. .+|.... ..|.|.++++ +++| +.|||.+++. ++.||..-....
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~ 112 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEV 112 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCC
Confidence 3456776 88889999999999999983 3555432 4799999999 9999 9999999653 255554433333
Q ss_pred CCCCeeeEEEeccCCCCCCCCC--CCCCCC--Ccccc-ccccccCCCCC---CCHHHHHHHHHHHHHhhhhccccccCCC
Q 016718 92 NYGVVNCVYIAVPQPDMVPNTI--SPETSG--NMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD 163 (384)
Q Consensus 92 ~~G~~nNvi~v~~~~~~~p~~~--~~~~~~--~~dl~-~~~~~~~~~~~---~s~~~~e~~~~~~~~~l~~~~~~dvmp~ 163 (384)
.-++.+-+. ..++..=.-. ...-.+ ..++- =.+| -+.+.+ .+-.++..++-+|-.-|+ .|+-++||.
T Consensus 113 ~p~~aS~v~---~~~~y~W~d~~~~~~~~~~~~e~~vIYElH-vGs~~~~~~~~~~e~a~~llpYl~elG-~T~IELMPv 187 (628)
T COG0296 113 GPHTASQVV---DLPDYEWQDERWDRAWRGRFWEPIVIYELH-VGSFTPDRFLGYFELAIELLPYLKELG-ITHIELMPV 187 (628)
T ss_pred CCCCcceec---CCCCcccccccccccccCCCCCCceEEEEE-eeeccCCCCcCHHHHHHHHhHHHHHhC-CCEEEEccc
Confidence 222222121 2111111100 001111 11111 1222 344433 344555555666655565 899999997
Q ss_pred C
Q 016718 164 S 164 (384)
Q Consensus 164 s 164 (384)
.
T Consensus 188 ~ 188 (628)
T COG0296 188 A 188 (628)
T ss_pred c
Confidence 6
No 194
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.73 E-value=0.00011 Score=49.06 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=41.9
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 261 ~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
++++.+++++.+++..|.+++.+++||+++ ++ +++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE---EG---RLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC---CC---eEEEEEEHHHHHHhh
Confidence 568899999999999999999999999983 35 799999999998765
No 195
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.73 E-value=0.00012 Score=58.51 Aligned_cols=53 Identities=26% Similarity=0.470 Sum_probs=42.8
Q ss_pred EEEEEeeC---CCceEEEEec---CCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718 22 PVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 22 ~v~f~w~~---~~~~V~v~Gs---F~~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
+++|.... .|++++|+|+ |.+|++. ++|.... .+.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence 56666654 5789999996 7899964 5888754 6789999999997 59999997
No 196
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.71 E-value=8.3e-05 Score=59.66 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=46.2
Q ss_pred eEEEEEeeC---CCceEEEEecCC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 016718 21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 21 ~~v~f~w~~---~~~~V~v~GsF~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
+.|+|.... .+++|+|+||.. +|++ .++|...+. ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 678888844 589999999987 7997 468887532 36799999999998 59999999
No 197
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.66 E-value=0.00016 Score=48.24 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=41.6
Q ss_pred EEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHH
Q 016718 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (384)
Q Consensus 167 vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l 214 (384)
.+++++++++.++.+.|.++++..+||+++ +++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 457889999999999999999999999996 58999999999997643
No 198
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=0.00012 Score=60.24 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=44.6
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHH
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~ 311 (384)
+|.+++.++.+++++.+|+..|.+++++.+||+|. +| +++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~---~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DG---TPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHhhc
Confidence 36778899999999999999999999999999983 36 8999999999864
No 199
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.57 E-value=0.00059 Score=55.24 Aligned_cols=67 Identities=28% Similarity=0.531 Sum_probs=44.3
Q ss_pred EEEE-eeCCCceEEEEecCCCCCC-CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEc-CEe--ecCCCCCeee
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVD-GEW--RHDENQPHVS 90 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~~-~~~m~~~~~~~~~~~~~~~-L~~G~-y~YkFiVD-G~w--~~d~~~p~~~ 90 (384)
++|+ |...+++|.|+++|++|.. ..+|.+.+ ..|.|.+.+. +++|. |.|++..+ |.+ +.||....+.
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~ 96 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE 96 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence 5666 6668999999999999965 35898753 3799998886 66664 44444443 333 4455444333
No 200
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.49 E-value=0.00034 Score=56.47 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=48.0
Q ss_pred EEEEE-eeCCCceEEEEecCCCCC-----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE-----eecCCCCCee
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHV 89 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~-----w~~d~~~p~~ 89 (384)
.++|+ |...+++|.|.. |++|. ..++|.+. .+|.|++.+. +.+|. .|+|.|+|. ...||.....
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~--~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG--ENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC--CCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeE
Confidence 36775 677799999998 88886 34689874 3899999987 45565 488888775 6777776654
Q ss_pred e
Q 016718 90 S 90 (384)
Q Consensus 90 ~ 90 (384)
.
T Consensus 85 ~ 85 (100)
T cd02860 85 S 85 (100)
T ss_pred e
Confidence 4
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00094 Score=69.07 Aligned_cols=136 Identities=8% Similarity=0.060 Sum_probs=91.1
Q ss_pred cEEEEecC-ccHHHHHHHHHHcCCCeeeee-eCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhHHHHHHHHHh
Q 016718 166 KVTALDVN-LAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (384)
Q Consensus 166 ~vv~i~~~-~~l~~A~~~L~~~~i~~lPV~-D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (384)
+++++..+ .++.+...+|.+....+.||+ ++++.+++|+++.+|+.-.+.......+.....++. ...+.......
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~--f~~~~~~~~~~ 634 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY--FNDPSPSAVAG 634 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc--cCCCCccccCC
Confidence 45555554 899999999999999999986 445679999999999987765433221111000000 00000000000
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 244 ~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
. ..+ -+...+|...++|+...+++..++.++.+-+++.+-|.. +| ++.|+||.+|++++.
T Consensus 635 ~--~~~-~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G---~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 635 I--PSR-LDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NG---ILLGIITKKDCLRHT 694 (696)
T ss_pred C--CCC-cCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CC---eeEeeeehHHHHHhh
Confidence 0 000 011124566778999999999999999999999999985 37 999999999999875
No 202
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.39 E-value=0.0015 Score=52.08 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=43.6
Q ss_pred eEEEEEeeC---CCceEEEEecC---CCCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718 21 VPVRFIWPN---GGRRVSLSGSF---TRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 21 ~~v~f~w~~---~~~~V~v~GsF---~~W~~~~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
+.++|+... .|++++|+|+- .+|++..+|... .+.|++++.+|++ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 567777765 48999999986 589987788764 4569999999998 59999999
No 203
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.34 E-value=0.00054 Score=66.42 Aligned_cols=89 Identities=8% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
.+.-++.+++++.+-..+-.+.+..|.||+|. .. +++||+|.+|++...- . -++.
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~~~----~--------------t~ie- 252 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDKKP----S--------------TTIE- 252 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcCCC----C--------------ccHH-
Confidence 56678999999999999999999999999984 34 8999999999875421 0 1222
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
..|+++.+|+.+.+++..+..+|.-.++.-+||+
T Consensus 253 ------KVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv 286 (432)
T COG4109 253 ------KVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVV 286 (432)
T ss_pred ------HHhccCCeeecccchHHHHHHHHHhccceeeeEE
Confidence 2356889999999999999999999999999997
No 204
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.31 E-value=0.0017 Score=52.46 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=42.9
Q ss_pred eeEEEEEeeC----CCceEEEEe---cCCCCCCCC-CCCCCC-CCCCeEEEEEecCCce-EEEEEEE
Q 016718 20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPGH-HQYKFYV 76 (384)
Q Consensus 20 ~~~v~f~w~~----~~~~V~v~G---sF~~W~~~~-~m~~~~-~~~~~~~~~~~L~~G~-y~YkFiV 76 (384)
-++|+|.... .+++++|+| ++.+|+... +|.... ...+.|++++.||+|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 3789999743 478999999 577998642 343221 2357899999999995 9999999
No 205
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.25 E-value=0.001 Score=55.67 Aligned_cols=57 Identities=25% Similarity=0.496 Sum_probs=44.5
Q ss_pred EEEEEeeC----CCceEEEEec---CCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC
Q 016718 22 PVRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG 78 (384)
Q Consensus 22 ~v~f~w~~----~~~~V~v~Gs---F~~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVDG 78 (384)
.++|.... .+++|+|+|+ +.+|++. .+|.+.......|++++.||++ .++|||++..
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~ 68 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV 68 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence 45666654 4789999999 8899854 5888752135789999999998 7999999943
No 206
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.24 E-value=0.00087 Score=71.99 Aligned_cols=65 Identities=26% Similarity=0.595 Sum_probs=48.9
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCEe--ecCCCCCee
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV 89 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiV---DG~w--~~d~~~p~~ 89 (384)
-++|+ |...|++|.|+|+||+|+.. .+|.+. ..|+|++.++ +.+| ..|||.| ||.+ +.||-....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~ 211 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT 211 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence 46776 66779999999999999875 589875 4899999985 6667 3566666 7866 366665543
No 207
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.24 E-value=0.00081 Score=72.42 Aligned_cols=64 Identities=25% Similarity=0.436 Sum_probs=47.0
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEec-------CCceEEEEEEE---cCE--eecCCCCC
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYV---DGE--WRHDENQP 87 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L-------~~G~y~YkFiV---DG~--w~~d~~~p 87 (384)
.++|+ |...|++|+|+|+||+|++. .+|++.+ .|+|++.++- +.|. .|||.| ||. ++.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence 45665 88889999999999999875 5898865 7999999863 4453 677777 354 35666544
Q ss_pred e
Q 016718 88 H 88 (384)
Q Consensus 88 ~ 88 (384)
.
T Consensus 192 ~ 192 (758)
T PLN02447 192 Y 192 (758)
T ss_pred e
Confidence 3
No 208
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.21 E-value=0.00097 Score=71.34 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=47.8
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEE-cCEe--ecCCCCCee
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHV 89 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G-~y~YkFiV-DG~w--~~d~~~p~~ 89 (384)
.++|+ |...|++|+|+|+||+|.+. .+|.+.. .|+|++++. +.+| .|.|++.. +|.| +.||.....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence 57786 55679999999999999875 5898753 799999988 4455 57777654 5665 455554433
No 209
>PRK11573 hypothetical protein; Provisional
Probab=97.19 E-value=0.0022 Score=65.11 Aligned_cols=96 Identities=6% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (384)
Q Consensus 257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (384)
.+..+++++.++++.++++++.+++..|+||.++ .. . +++|++..+|+++++... +.. ++. .+
T Consensus 195 Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~-D---~IiGiv~~kDll~~~~~~-~~~---------~~~--~l 257 (413)
T PRK11573 195 PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD-SL-D---DAISMLRVREAYRLMTEK-KEF---------TKE--NM 257 (413)
T ss_pred ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC-CC-C---ceEEEEEHHHHHHHhhcc-CcC---------CHH--HH
Confidence 3568999999999999999999999999999974 22 3 699999999999865421 110 001 11
Q ss_pred cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeee
Q 016718 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQ 377 (384)
Q Consensus 337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV 377 (384)
...+ +++..|++++++.++++.|.+++..=.-|
T Consensus 258 ~~~~--------r~~~~Vpe~~~l~~lL~~~~~~~~~~AiV 290 (413)
T PRK11573 258 LRAA--------DEIYFVPEGTPLSTQLVKFQRNKKKVGLV 290 (413)
T ss_pred Hhhc--------cCCeEeCCCCcHHHHHHHHHhcCCeEEEE
Confidence 1222 57899999999999999999998764433
No 210
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0011 Score=67.49 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=77.9
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHHhc-----CCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccc
Q 016718 253 NGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327 (384)
Q Consensus 253 ~~~~m~~~~itv~~~~~l~~a~~~m~~~-----~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~ 327 (384)
.+..|+..++++.++.|+.+|+..+.+. .+..+.|+|. ++ +|+|++|.++++.. + -
T Consensus 134 aG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~a------~-------~ 194 (451)
T COG2239 134 AGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLTA------E-------P 194 (451)
T ss_pred hhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhcC------C-------c
Confidence 3457999999999999999999999954 5688999984 45 89999999998743 1 0
Q ss_pred ccccccccccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 328 ~~~v~~l~ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
+.+ + .++|.+.+++|.+++...++.+++.++++-++|||.
T Consensus 195 ~~~-----i-------~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 195 DEL-----L-------KDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred HhH-----H-------HHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 111 2 223456789999999999999999999999999985
No 211
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.10 E-value=0.0056 Score=49.81 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=43.3
Q ss_pred eEEEEEeeC-----CCceEEEEecCC---CCCCCC-----CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718 21 VPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPGH-HQYKFYV 76 (384)
Q Consensus 21 ~~v~f~w~~-----~~~~V~v~GsF~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV 76 (384)
++++|+... .|++++|+|+-. +|+... +|... ....|.+++.||.|. ++|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~--~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP--NWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC--CCCCEEEEEEcCCCCcEEEEEEE
Confidence 789999864 478999999864 899732 66543 356899999999994 9999999
No 212
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.10 E-value=0.0017 Score=52.67 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=40.5
Q ss_pred EEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCE
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE 79 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~ 79 (384)
+.|+ |...+++|.|+. |++|. ..++|++.. +|+|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence 5675 666799999998 66664 346898754 799999985 56665 799999994
No 213
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.09 E-value=0.002 Score=51.44 Aligned_cols=54 Identities=20% Similarity=0.403 Sum_probs=42.8
Q ss_pred eEEEEEeeC----CCceEEEEecC---CCCCCCCCCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 016718 21 VPVRFIWPN----GGRRVSLSGSF---TRWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV 76 (384)
Q Consensus 21 ~~v~f~w~~----~~~~V~v~GsF---~~W~~~~~m~~~~~~~~~~~~~~~L~~G~-y~YkFiV 76 (384)
++++|+..+ +++.++|+|+= -+|+...+|.... ...|++++.||++. ++|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence 356777644 45778999985 4899888997653 57899999999985 9999998
No 214
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.94 E-value=0.0089 Score=48.19 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=41.1
Q ss_pred EEEEeeC----CCceEEEEecC---CCCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE
Q 016718 23 VRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV 76 (384)
Q Consensus 23 v~f~w~~----~~~~V~v~GsF---~~W~~~--~~m~~~~~~~~~~~~~~~L~~G--~y~YkFiV 76 (384)
|+|+... .+++++|+|+- .+|++. ++|.... ...|++++.+|++ .++|||++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence 5566544 47899999995 589964 5888754 6789999999986 59999998
No 215
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.94 E-value=0.0017 Score=73.23 Aligned_cols=63 Identities=25% Similarity=0.586 Sum_probs=47.0
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---CEe--ecCCCC
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQ 86 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD---G~w--~~d~~~ 86 (384)
-+.|. |...+++|+|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|. |.| +.||..
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 56676 77789999999999999875 5888742 3799999885 77885 6788874 554 344443
No 216
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.93 E-value=0.002 Score=68.78 Aligned_cols=65 Identities=31% Similarity=0.593 Sum_probs=47.7
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEec-CCceEEEEEEEcC---Ee--ecCCCCCee
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHV 89 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~L-~~G~y~YkFiVDG---~w--~~d~~~p~~ 89 (384)
-++|+ |...|++|.|+|+||+|... .+|.+.+ .|.|++.++- .+| ..|||.|++ .+ +.||.....
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~ 111 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF 111 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence 46776 67789999999999999874 5898764 6999999864 455 468888854 33 566655443
No 217
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.87 E-value=0.0053 Score=50.01 Aligned_cols=59 Identities=25% Similarity=0.501 Sum_probs=44.9
Q ss_pred CceeEEEEEeeC---CCceEEEEecCC---CCCCC--CCCCCCC--CCCCeEEEEEecCCce-EEEEEEE
Q 016718 18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV 76 (384)
Q Consensus 18 ~~~~~v~f~w~~---~~~~V~v~GsF~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~G~-y~YkFiV 76 (384)
+..+.++|.... .|+.++|+|+-. +|++. ++|.... .....|++++.||++. ++|||++
T Consensus 4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 345778888754 589999999964 79964 5786531 1246899999999985 9999997
No 218
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.85 E-value=0.0045 Score=50.06 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=37.5
Q ss_pred CCceEEEEec---CCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718 30 GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 30 ~~~~V~v~Gs---F~~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
.|+.++|+|+ ..+|++. ++|.... ...|++++.+|++ .++|||++
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence 5799999999 5689964 5787654 5689999999988 59999998
No 219
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.84 E-value=0.0029 Score=68.74 Aligned_cols=58 Identities=31% Similarity=0.618 Sum_probs=43.8
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-CEe
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW 80 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G-~y~YkFiVD-G~w 80 (384)
.++|+ |...|++|.|+|+||+|... .+|.+.. ..|.|++++. +++| .|.|++..+ |.|
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~ 194 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGEL 194 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence 47787 55579999999999999864 5898762 3799998885 5666 577777664 454
No 220
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.74 E-value=0.011 Score=60.18 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (384)
Q Consensus 257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (384)
.+.+++.++.++++.++++.+.+++..|+||.++ .. + .++|++..+|++.++..... .. ...
T Consensus 214 PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~-D---~iiGiv~~Kdll~~~~~~~~-~~----~~~-------- 275 (429)
T COG1253 214 PRTDIVALDLTDTVEELIELILESGHSRIPVYDG-DL-D---NIIGIVHVKDLLRALLDGQS-DL----DLR-------- 275 (429)
T ss_pred ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CC-C---cEEEEEEHHHHHHHHhcCcc-cc----chh--------
Confidence 3568999999999999999999999999999984 22 3 69999999999999876421 00 000
Q ss_pred cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCce
Q 016718 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTL 374 (384)
Q Consensus 337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~ 374 (384)
.. -+++..|++.+++.++++.|.+++..=
T Consensus 276 -~~--------~~~~~~Vpet~~~~~lL~~~r~~~~hm 304 (429)
T COG1253 276 -VL--------VRPPLFVPETLSLSDLLEEFREERTHM 304 (429)
T ss_pred -hc--------ccCCeEecCCCcHHHHHHHHHHhCCeE
Confidence 01 137889999999999999999887653
No 221
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.70 E-value=0.012 Score=58.66 Aligned_cols=90 Identities=3% Similarity=0.051 Sum_probs=70.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccc
Q 016718 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (384)
Q Consensus 259 ~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~ 338 (384)
...+...++.+..++...|..++...+.|+|. ++ +++|.++..++.+++... .. +.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~-~~-----------~~~----- 306 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA-QG-----------LQD----- 306 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC-Cc-----------hhh-----
Confidence 34456778889999999999999999999984 35 899999999998776421 11 111
Q ss_pred cccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 339 ~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
.+...+.++.+++++.+++.+|.+++.. +||+-
T Consensus 307 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 339 (363)
T TIGR01186 307 -------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD 339 (363)
T ss_pred -------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC
Confidence 1124667999999999999999999999 99973
No 222
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.65 E-value=0.0086 Score=47.55 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=37.8
Q ss_pred CCceEEEEecCC---CCCC--CCCCCCCCCCCCeEEEEEecCC--c-eEEEEEEE
Q 016718 30 GGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV 76 (384)
Q Consensus 30 ~~~~V~v~GsF~---~W~~--~~~m~~~~~~~~~~~~~~~L~~--G-~y~YkFiV 76 (384)
.|+.++|+|+.. +|++ .++|...+ ..+.|++++.+|+ + .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 589999999975 8985 36887653 2578999999999 7 69999998
No 223
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.57 E-value=0.017 Score=46.42 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=41.5
Q ss_pred eEEEEEeeC----CCceEEEEecCC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 016718 21 VPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 21 ~~v~f~w~~----~~~~V~v~GsF~---~W~~~--~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
++++|.... .++.++|+|+-. +|++. ++|... ....|.+++.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 356676432 478999999865 89964 577654 35789999999998 59999988
No 224
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.46 E-value=0.012 Score=45.92 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=44.5
Q ss_pred EEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc-CEeecCCCCCee
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHV 89 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVD-G~w~~d~~~p~~ 89 (384)
++|+ |...+++|.|...+ |. ..+|.+.+ +|.|++++.--+|. .|+|.|+ |..+.||.....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 5676 66689999999744 53 47898754 79999998644665 4777776 467888877654
No 225
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.44 E-value=0.022 Score=46.06 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=42.1
Q ss_pred eeEEEEEeeC----CCceEEEEecCC---CCCCCC--CCC-CC-CCCCCeEEEEEecCCc-eEEEEEEE
Q 016718 20 LVPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMS-PS-EGCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 20 ~~~v~f~w~~----~~~~V~v~GsF~---~W~~~~--~m~-~~-~~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
.++++|..+. .|++++|+|+-. +|++.. .|. .. ......|.+++.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 3788888753 479999999854 899643 232 11 1235689999999999 49999999
No 226
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.19 E-value=0.012 Score=61.73 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=48.5
Q ss_pred EEEE-eeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-EeecCCCCCeee
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS 90 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG-~w~~d~~~p~~~ 90 (384)
++|+ |...|++|.|.+. + ...+|.+.+ +|+|++++. +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4575 6778999999973 3 347898864 799999987 6778 789999999 678998887654
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.028 Score=56.84 Aligned_cols=85 Identities=7% Similarity=0.013 Sum_probs=66.6
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccccccccc
Q 016718 263 QAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPR 342 (384)
Q Consensus 263 tv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~~~~ 342 (384)
...++.+..+|+..|.+++...+.|+|. ++ +++|+|+..++.+..... . ++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~-~-----------~~~~~-------- 342 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ-Q-----------GLDAA-------- 342 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC-C-----------chhhh--------
Confidence 3457789999999999999999999984 46 899999999998775421 1 11111
Q ss_pred cccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 343 IGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 343 v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+...+.++.+++++.+|+..|.+.... +||+
T Consensus 343 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 373 (400)
T PRK10070 343 ----LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVV 373 (400)
T ss_pred ----hccCCceeCCCCCHHHHHHHHHhCCCc-EEEE
Confidence 123667999999999999999997766 8886
No 228
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.07 E-value=0.015 Score=48.41 Aligned_cols=59 Identities=25% Similarity=0.490 Sum_probs=43.1
Q ss_pred EEEE-eeCCCceEEEEecCCCCC---C--CCCCCCCC-CCCCeEEEEEe-cCCceEEEEEEEcCEeecC
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHD 83 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~G~y~YkFiVDG~w~~d 83 (384)
++|+ |...|++|.|+. |++|. + .++|.+.+ +.+|+|++.+. +.+|. .|+|.|+|.|.-+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 6675 677799999999 88886 2 35776542 23699999876 56776 7999999975433
No 229
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.05 E-value=0.025 Score=56.82 Aligned_cols=109 Identities=9% Similarity=0.032 Sum_probs=71.4
Q ss_pred hccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhh
Q 016718 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (384)
Q Consensus 154 ~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (384)
-.++.++|... ......+-+ .|+ ..++...+.|+|. |+++..+...+..+.... .+
T Consensus 273 ~l~a~~~m~~~--~~~~~~~~~--~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~--------- 328 (382)
T TIGR03415 273 VLTARSLMRPL--TDLEHVDGG--WCV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQ--EV--------- 328 (382)
T ss_pred ceeHHHHhccc--ccccccCcc--hhh---hhcccceeEeecc------ceecccchHhHhhccccc--ch---------
Confidence 45667777321 112222222 333 3388999999983 888877765433221100 00
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHH
Q 016718 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (384)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l 313 (384)
.+ +...+.+++++++|.+++..+.+.+ +-+||+| + | +++|+|+..+++++|
T Consensus 329 ----~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~---~-~---~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 329 ----ES-----------------LEAAPTVINPDTLMRDVLAARHRTG-GAILLVE---N-G---RIVGVIGDDNIYHAL 379 (382)
T ss_pred ----hh-----------------hcccCcccCCCCcHHHHHHHHhcCC-CCeEEee---C-C---eEEEEEeHHHHHHHH
Confidence 11 1345678999999999999998876 5589987 3 6 899999999999998
Q ss_pred Hh
Q 016718 314 CR 315 (384)
Q Consensus 314 ~~ 315 (384)
..
T Consensus 380 ~~ 381 (382)
T TIGR03415 380 LG 381 (382)
T ss_pred hc
Confidence 64
No 230
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.028 Score=51.98 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccc
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (384)
+.++..+++..+.+|.+++..+.+....|.||+.. +.. .+.||+-.+|+|+++...... ++ ++++
T Consensus 74 IPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD---~v~GIL~AKDLL~~~~~~~~~-------F~--i~~l- 138 (293)
T COG4535 74 IPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HVEGILLAKDLLPFMRSDAEP-------FD--IKEL- 138 (293)
T ss_pred ccHHHheeccccCCHHHHHHHHHHhccccCCcccC--Cch---hhhhhhhHHHHHHHhcCCccc-------cc--HHHh-
Confidence 34678899999999999999999999999999974 222 699999999999997654321 11 1111
Q ss_pred ccccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT 373 (384)
Q Consensus 336 ig~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is 373 (384)
-||.+.|+++..+...++-+..++..
T Consensus 139 ------------LRPav~VPESKrvd~lLkeFR~~RnH 164 (293)
T COG4535 139 ------------LRPAVVVPESKRVDRLLKEFRSQRNH 164 (293)
T ss_pred ------------cccceecccchhHHHHHHHHHhhcCc
Confidence 26999999999999999999887754
No 231
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.86 E-value=0.02 Score=61.16 Aligned_cols=66 Identities=24% Similarity=0.532 Sum_probs=47.8
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---CE--eecCCCCCee
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHV 89 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~~-~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD---G~--w~~d~~~p~~ 89 (384)
.++|+ |...|++|.|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|+|.|. |. ++.||.....
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~ 102 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA 102 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence 46676 67789999999999999864 4887653 2699999886 35565 5888884 54 4677765443
No 232
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.06 Score=53.49 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=97.6
Q ss_pred HHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCC---CCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCC
Q 016718 183 LYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR 259 (384)
Q Consensus 183 L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~ 259 (384)
|..+.....|++.+ ....||+.+...++..+...+ .+.+.|+ ....+..|+..... .-+
T Consensus 55 ltr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-------------~~~ 116 (503)
T KOG2550|consen 55 LTRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-------------FIN 116 (503)
T ss_pred hhhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-------------ccc
Confidence 34455556688864 345689999887765443211 1222111 11112223322211 134
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCcccccccccccccccc
Q 016718 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (384)
Q Consensus 260 ~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ig~~ 339 (384)
+++..+|+.++.++++...++++..+||.+...-+ ++|+||||-+|+--. -.+ . ..+.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi~f~-~~~-----------~-----~~~~~- 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDIQFL-EDN-----------S-----LLVSD- 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCccc---ceeEEEEehhhhhhh-hcc-----------c-----chhhh-
Confidence 56789999999999999999999999999631122 389999999998543 111 1 11222
Q ss_pred ccccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 340 VPRIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 340 ~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+|....++.....++.++=++|.+++-..+|||
T Consensus 176 ------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv 208 (503)
T KOG2550|consen 176 ------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVV 208 (503)
T ss_pred ------hcccccccccccccHHHHHHHHHhhhcCCccee
Confidence 233455899999999999999999999999997
No 233
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.59 E-value=0.018 Score=62.59 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=43.5
Q ss_pred EEE-EeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE--cCEe--ecCCC
Q 016718 23 VRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGEW--RHDEN 85 (384)
Q Consensus 23 v~f-~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiV--DG~w--~~d~~ 85 (384)
++| +|...|++|+|+|+||+ ....+|.+.+ ..|.|++.+++..|.. |||.| ||.+ ..||.
T Consensus 30 ~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPy 94 (726)
T PRK05402 30 LVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPY 94 (726)
T ss_pred EEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEecccc
Confidence 455 48889999999999996 3446898753 3799999999777742 55555 7854 56654
No 234
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=95.57 E-value=0.1 Score=43.76 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=56.0
Q ss_pred eEEEEEee----CCCceEEEEecCCCCCCC-----CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCE-----------
Q 016718 21 VPVRFIWP----NGGRRVSLSGSFTRWSEP-----MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE----------- 79 (384)
Q Consensus 21 ~~v~f~w~----~~~~~V~v~GsF~~W~~~-----~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVDG~----------- 79 (384)
+.|||-|+ .....+.|.|+.|+++.. ..|++.++ ..+|..++.||.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 46999999 345779999999998642 46777653 6899999999998 78999997533
Q ss_pred -----eecCCCCCeee-CC---CCCeeeEEEeccCCCCC
Q 016718 80 -----WRHDENQPHVS-GN---YGVVNCVYIAVPQPDMV 109 (384)
Q Consensus 80 -----w~~d~~~p~~~-d~---~G~~nNvi~v~~~~~~~ 109 (384)
-+.||-||... .. .|...++++. .++..+
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L-p~Ap~q 118 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL-PDAPPQ 118 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE--TTS---
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeC-CCCccC
Confidence 36788888753 33 4889999999 554433
No 235
>PLN02316 synthase/transferase
Probab=95.42 E-value=0.047 Score=61.00 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEEEeeC----CCceEEEEecCCCCCCC---CCCCCCCCCCCeEEEEEecCCceEEEEE
Q 016718 2 YNSGLNTGHENSGVVGSILVPVRFIWPN----GGRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKF 74 (384)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~f~w~~----~~~~V~v~GsF~~W~~~---~~m~~~~~~~~~~~~~~~L~~G~y~YkF 74 (384)
|-.|+-|+-++........+.+.|.-.. +..+|.|.|.||+|.-. .+|.+.+..+++|++++.+|++-|..-|
T Consensus 137 ~~~~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldf 216 (1036)
T PLN02316 137 FSRGNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDF 216 (1036)
T ss_pred cCCCCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEE
Confidence 3457777777777766655555554433 24789999999999864 3677765457899999999999999999
Q ss_pred EE-cCEeecC
Q 016718 75 YV-DGEWRHD 83 (384)
Q Consensus 75 iV-DG~w~~d 83 (384)
+. ||.-.+|
T Consensus 217 Vf~~g~~~yD 226 (1036)
T PLN02316 217 VFFNGQNVYD 226 (1036)
T ss_pred EEeCCccccc
Confidence 98 7744333
No 236
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.36 E-value=0.043 Score=44.22 Aligned_cols=54 Identities=30% Similarity=0.602 Sum_probs=39.2
Q ss_pred EEEEeeC---CCceEEEEecC---CCCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718 23 VRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 23 v~f~w~~---~~~~V~v~GsF---~~W~~~--~~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
++|.-.+ .|++++|+|+- .+|+.. .+|.... .....|++++.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 4555443 48999999985 479764 5785421 123489999999998 49999999
No 237
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.96 E-value=0.29 Score=40.43 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=37.5
Q ss_pred eeCCCceEEEEec---CCCCCCC--CCCCCCC-----CCCCeEEEEEecCCc----eEEEEEEE
Q 016718 27 WPNGGRRVSLSGS---FTRWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV 76 (384)
Q Consensus 27 w~~~~~~V~v~Gs---F~~W~~~--~~m~~~~-----~~~~~~~~~~~L~~G----~y~YkFiV 76 (384)
+-..+++++|+|+ +.+|+.. ++|.... .....|++++.||++ .++|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 3346899999998 4589965 4676541 124579999999996 69999998
No 238
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.048 Score=56.82 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=89.4
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhh-cccCC-C--Ccc-----
Q 016718 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHSS-S--SLP----- 325 (384)
Q Consensus 255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~-~~~~~-~--~~~----- 325 (384)
++|++|++++..-+.+...+..|.....+..||+|+- +.+..++|.|+|=.+.++..|-.. +.+.. + .++
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~-~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~ 664 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEP-PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKF 664 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCC-CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcC
Confidence 4689999999999999999999999999999999962 221113899999999999988754 22110 0 011
Q ss_pred ----cc--cccccccccccccc----ccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeec
Q 016718 326 ----IL--QQPVSSIQLGTWVP----RIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQP 378 (384)
Q Consensus 326 ----~~--~~~v~~l~ig~~~~----~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~ 378 (384)
+. ..+++++.+.+... ...+.|.....||.+++++..++.++.+-|++++-|+
T Consensus 665 ~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv 727 (762)
T KOG0474|consen 665 TFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVV 727 (762)
T ss_pred CHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEe
Confidence 11 11333333322111 1256788889999999999999999999999999886
No 239
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.51 E-value=0.076 Score=51.56 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=78.7
Q ss_pred ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCCCChhhhhhhhH
Q 016718 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (384)
Q Consensus 155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i 234 (384)
.++.++|-.-...+.-.....-..|.+.+...+...+-+++ ..++++|+++..+.+..
T Consensus 274 ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~--------------------- 331 (386)
T COG4175 274 LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA--------------------- 331 (386)
T ss_pred eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc---------------------
Confidence 46777775311111112222335688888888888888888 56789999976665321
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHH
Q 016718 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~ 314 (384)
.+..++.++.+++++.+.+....+.. ..+||+|+ +| +++|+|+...++.+|+
T Consensus 332 ---------------------~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde---~~---r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ---------------------ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDE---DG---RYVGIISRGELLEALA 383 (386)
T ss_pred ---------------------cccccccccCccchHHHHHHHHhcCC-CceeEEcC---CC---cEEEEecHHHHHHHHh
Confidence 02467788999999999998888765 56788873 46 8999999999999987
Q ss_pred h
Q 016718 315 R 315 (384)
Q Consensus 315 ~ 315 (384)
.
T Consensus 384 ~ 384 (386)
T COG4175 384 R 384 (386)
T ss_pred c
Confidence 5
No 240
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.00 E-value=0.14 Score=54.64 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=45.0
Q ss_pred EEEE-eeCCCceEEEEecCCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEcCE--eecCCCCCee
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVDGE--WRHDENQPHV 89 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~G~-y~YkFiVDG~--w~~d~~~p~~ 89 (384)
+.|+ |...+++|.|++ |++|.. .++|.+.. +|+|++.++ +.+|. |.|++..+|. ++.||.....
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~ 94 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV 94 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence 6776 666799999998 888853 35888753 799999987 45563 4444444565 4788876543
No 241
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.92 E-value=0.081 Score=41.64 Aligned_cols=61 Identities=23% Similarity=0.480 Sum_probs=37.5
Q ss_pred EEEEEeeC------CCceEEEEecCCCCCCC--CCCCCCC--CCCCeEEEEEecCCceEEEEEEE-cC--Eeec
Q 016718 22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH 82 (384)
Q Consensus 22 ~v~f~w~~------~~~~V~v~GsF~~W~~~--~~m~~~~--~~~~~~~~~~~L~~G~y~YkFiV-DG--~w~~ 82 (384)
++++.|.. ++.+|++.+.|++|+.. +.|.+.. ...+.|++++.+|..-|+..|.. || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 45666632 36889999999999975 3566532 12689999999999988888888 65 5644
No 242
>PLN02950 4-alpha-glucanotransferase
Probab=92.64 E-value=1.2 Score=49.65 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=52.2
Q ss_pred CCCceeEEEEEeeC----CCceEEEEecC---CCCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE---cC--E
Q 016718 16 VGSILVPVRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--E 79 (384)
Q Consensus 16 ~~~~~~~v~f~w~~----~~~~V~v~GsF---~~W~~~--~~m~~~~~~~~~~~~~~~L~~G--~y~YkFiV---DG--~ 79 (384)
.++..++++|.... .|++|+|+|+- .+|++. .+|... ....|++++.+|++ ..+|||++ +| .
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~--~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT--GDSIWEADCLVPKSDFPIKYKYALQTAEGLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC--CCCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence 34566888998754 47999999985 489964 467653 36789999999988 49999998 34 4
Q ss_pred eecCCCCCe
Q 016718 80 WRHDENQPH 88 (384)
Q Consensus 80 w~~d~~~p~ 88 (384)
|-..++.-.
T Consensus 226 WE~g~NR~~ 234 (909)
T PLN02950 226 LELGVNREL 234 (909)
T ss_pred EeeCCCcee
Confidence 655555433
No 243
>PLN02950 4-alpha-glucanotransferase
Probab=92.34 E-value=1 Score=50.16 Aligned_cols=60 Identities=27% Similarity=0.486 Sum_probs=44.7
Q ss_pred CCceeEEEEEeeC---CCceEEEEecCC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 016718 17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (384)
Q Consensus 17 ~~~~~~v~f~w~~---~~~~V~v~GsF~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~G-~y~YkFiV 76 (384)
.+..+.++|.-+. -|++|+|+|+-. +|+.. .+|.... ..+..|++++.||+| ..+|||++
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 4455777777654 489999999974 79864 5786532 123489999999998 59999995
No 244
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.00 E-value=0.95 Score=45.99 Aligned_cols=89 Identities=25% Similarity=0.317 Sum_probs=60.2
Q ss_pred CCceeEEEEEeeCC-C-------ceEEEEe--cCC--CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C--
Q 016718 17 GSILVPVRFIWPNG-G-------RRVSLSG--SFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G-- 78 (384)
Q Consensus 17 ~~~~~~v~f~w~~~-~-------~~V~v~G--sF~--~W~~~~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVD---G-- 78 (384)
....+.|||-|+++ + +.|+|-+ ..+ .+.....|.+-.+ ..+|..++.||.. +-.|+|++. +
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence 34568999999973 2 3588732 222 1333346888764 7899999999998 799999982 1
Q ss_pred -----------------------EeecCCCCCeee-CCCCCeeeEEEeccCCC
Q 016718 79 -----------------------EWRHDENQPHVS-GNYGVVNCVYIAVPQPD 107 (384)
Q Consensus 79 -----------------------~w~~d~~~p~~~-d~~G~~nNvi~v~~~~~ 107 (384)
.-+.||.||... +..|+..|++++ ..+.
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l-p~a~ 165 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM-PQAP 165 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC-CCCC
Confidence 114788888654 445655689988 5443
No 245
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.81 E-value=3.4 Score=44.54 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=50.1
Q ss_pred ccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCC-CCeEEEEeehHHHHHHHH
Q 016718 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILR 215 (384)
Q Consensus 155 ~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~-~~~~vGilT~~Dli~~l~ 215 (384)
..+.++| -++|..|..++|.+|.-++|...-++++|++|+. ..-++|.|.++.|...|.
T Consensus 588 v~VE~iM--V~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 588 VKVEHIM--VTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred EEeeeec--cccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 4466888 5678899999999999999998889999999974 346889999999998764
No 246
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.48 E-value=0.64 Score=50.37 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=39.9
Q ss_pred EEEEE-eeCCCceEEEEecCCCCCC----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCEe
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~~----~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~w 80 (384)
.+.|+ |...|++|.|+ -|++|.. .++|.+.. +|+|++.+. +.+|. .|+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence 46776 56678999986 5565542 35787743 799999986 67776 4999999853
No 247
>PLN02316 synthase/transferase
Probab=90.27 E-value=1.1 Score=50.58 Aligned_cols=58 Identities=14% Similarity=0.295 Sum_probs=43.2
Q ss_pred eEEEEEeeC------CCceEEEEecCCCCCCCC----CCCCCC-CCCCeEEEEEecCCceEEEEEEE-cC
Q 016718 21 VPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DG 78 (384)
Q Consensus 21 ~~v~f~w~~------~~~~V~v~GsF~~W~~~~----~m~~~~-~~~~~~~~~~~L~~G~y~YkFiV-DG 78 (384)
-++++.|.. ++.+|++.|.||+|+... .|.+.+ ..++.|.+++.+|+.-|-.-|+. ||
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 456666652 358999999999999642 222322 23569999999999999999998 66
No 248
>PLN02960 alpha-amylase
Probab=90.13 E-value=0.48 Score=52.00 Aligned_cols=54 Identities=28% Similarity=0.491 Sum_probs=39.7
Q ss_pred EEEEEeeCCCceEEEEecCCCCCCCC-CCC-----CCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 016718 22 PVRFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPGH-------HQYKFYVD 77 (384)
Q Consensus 22 ~v~f~w~~~~~~V~v~GsF~~W~~~~-~m~-----~~~~~~~~~~~~~~--L~~G~-------y~YkFiVD 77 (384)
-.-..|..+|+.+.|+|+||||+++. .|. +++ -|+|.++++ |..|+ -||.|..|
T Consensus 130 ~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 130 VDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred eEEEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 33456999999999999999999874 454 544 689998874 66652 25666664
No 249
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.02 E-value=0.77 Score=52.09 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=45.9
Q ss_pred EEEE-eeCCCceEEEEe-cCCCCCC---CCCCCCCCCCCCeEEEEEe-cCCc-----eEEEEEEEcC----EeecCCCCC
Q 016718 23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP 87 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~G-sF~~W~~---~~~m~~~~~~~~~~~~~~~-L~~G-----~y~YkFiVDG----~w~~d~~~p 87 (384)
++|+ |...|++|.|++ ++++|.. .++|.+.. .|+|++.++ +.+| -+.|+|.|++ ....||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 6676 677899999998 4556754 46898754 899999987 4432 3688888865 456777655
Q ss_pred e
Q 016718 88 H 88 (384)
Q Consensus 88 ~ 88 (384)
.
T Consensus 407 a 407 (1111)
T TIGR02102 407 S 407 (1111)
T ss_pred E
Confidence 3
No 250
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.01 E-value=10 Score=36.15 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHH--
Q 016718 136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI-- 213 (384)
Q Consensus 136 ~s~~~~e~~~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~-- 213 (384)
+++..++.+...+++-++. .+|.+..| +.||+++- ..+-|.| .|+++=.=|..+++..
T Consensus 169 I~R~~lQ~e~~~lq~~l~k-----------TivfVTHD--idEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 169 ITRKQLQEEIKELQKELGK-----------TIVFVTHD--IDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPA 228 (309)
T ss_pred hhHHHHHHHHHHHHHHhCC-----------EEEEEecC--HHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCcc
Confidence 6777777777777666653 34455554 77999863 4566776 5888888886666531
Q ss_pred ---HHHhccCCCCCChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEec
Q 016718 214 ---LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290 (384)
Q Consensus 214 ---l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~ 290 (384)
+..+.... +..+..+.+....+..... ....--.+.......+++..+...+...+||+|.
T Consensus 229 n~FV~~f~g~~----~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~ 292 (309)
T COG1125 229 NDFVEDFFGES----ERGLRLLSLVSVADAVRRG------------EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE 292 (309)
T ss_pred HHHHHHHhccc----cccccccchhhHHHhhccc------------ccccCCccccchhhHHHHHHHHhcCCceeEEECC
Confidence 11111000 0000111111111111000 0001112334445556889999999999999984
Q ss_pred CCCCCCcccEEEEeeHHHHHHH
Q 016718 291 TGPAGSCQEILYLASLSDILKC 312 (384)
Q Consensus 291 ~~~~g~~~~lvGiit~~dil~~ 312 (384)
+| +++|.||+.+++..
T Consensus 293 ---~g---~~~G~vt~~~l~~~ 308 (309)
T COG1125 293 ---DG---RPLGTVTRADLLDE 308 (309)
T ss_pred ---CC---cEeeEEEHHHHhhh
Confidence 47 89999999999865
No 251
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.96 E-value=2.7 Score=44.33 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=79.1
Q ss_pred CceEeCCC-CCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCC----ccccccccccc
Q 016718 260 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSI 334 (384)
Q Consensus 260 ~~itv~~~-~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----~~~~~~~v~~l 334 (384)
++++++.+ .++.|...+|.+......||+=+ ++.. +++|++..+|+.-.+.... ...++ ...+.++..+.
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar-~~q~~~~~~~~~f~~~~~~~ 631 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNAR-KIQSFIVTTSIYFNDPSPSA 631 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhc-cccccceecccccCCCCccc
Confidence 36666665 79999999999999999999864 3333 8999999999998876321 11111 11333333322
Q ss_pred ccccccc-ccccCCCCCceEeCCCCCHHHHHHHHHhCCCceeeecc
Q 016718 335 QLGTWVP-RIGEANGRPFAMLRPTASLGSALALLVQGDLTLFQQPA 379 (384)
Q Consensus 335 ~ig~~~~-~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is~lPV~~ 379 (384)
..+.-.+ ....++...+.|+..++|..-+++++.+-+++.+-|..
T Consensus 632 ~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~ 677 (696)
T KOG0475|consen 632 VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK 677 (696)
T ss_pred cCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence 2222111 12346677889999999999999999999998877653
No 252
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=88.05 E-value=2.3 Score=47.34 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=44.8
Q ss_pred EEEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------CE----eecCCCCC
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP 87 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVD------G~----w~~d~~~p 87 (384)
.++|+ |...+++|.|++.+++|. ..++|.+.+ ..|+|++.+. ...|. .|+|.|+ |+ ...||...
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 46675 777899999997766664 236898752 3799999986 34454 4666664 53 36777665
Q ss_pred ee
Q 016718 88 HV 89 (384)
Q Consensus 88 ~~ 89 (384)
..
T Consensus 214 al 215 (898)
T TIGR02103 214 SL 215 (898)
T ss_pred eE
Confidence 44
No 253
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=87.88 E-value=0.91 Score=45.68 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=40.1
Q ss_pred cEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (384)
Q Consensus 166 ~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~ 215 (384)
.+.++.++++|.+++..+.+.+.. +||+| + |+++|+|+..+++.+|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHh
Confidence 356889999999999999888755 78888 3 89999999999988764
No 254
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=87.43 E-value=1.4 Score=43.65 Aligned_cols=92 Identities=10% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcccCCCCccccccccccccc
Q 016718 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (384)
Q Consensus 257 m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (384)
.++.+..+..|++..++++.+...-..|+|+..++ - . +++||+-.+|+++++.+.-. + ++ ..+
T Consensus 208 pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-~-D---nIiGvlh~r~llr~l~e~~~-~-------~k----~d~ 270 (423)
T COG4536 208 PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-L-D---NIIGVLHVRDLLRLLNEKNE-F-------TK----EDI 270 (423)
T ss_pred cccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-h-h---HhhhhhhHHHHHHHhhccCc-c-------cH----hHH
Confidence 46789999999999999999999999999999742 2 2 69999999999999986421 1 11 111
Q ss_pred cccccccccCCCCCceEeCCCCCHHHHHHHHHhCCCc
Q 016718 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQGDLT 373 (384)
Q Consensus 337 g~~~~~v~~~~~~~v~tv~~d~~v~~a~~~m~~~~is 373 (384)
.... .++..|++.+|+.+-+..|.+++-+
T Consensus 271 ~~~a--------~epyFVPe~Tpl~~QL~~F~~~k~h 299 (423)
T COG4536 271 LRAA--------DEPYFVPEGTPLSDQLVAFQRNKKH 299 (423)
T ss_pred HHHh--------cCCeecCCCCcHHHHHHHHHHhcce
Confidence 1111 3678999999999999999877643
No 255
>PRK03705 glycogen debranching enzyme; Provisional
Probab=85.79 E-value=1.7 Score=46.83 Aligned_cols=55 Identities=22% Similarity=0.441 Sum_probs=39.7
Q ss_pred EEEEE-eeCCCceEEEEecCCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCEe
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~--~~~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~w 80 (384)
-+.|+ |...|++|.|+. |+++. ..++|.+.. +|+|++.++ +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEcccc
Confidence 36776 566789999997 76653 236887643 799999986 55564 5999998843
No 256
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=84.20 E-value=1.5 Score=47.18 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=52.0
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEeeHHHHHHHHHhhcc
Q 016718 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318 (384)
Q Consensus 256 ~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit~~dil~~l~~~~~ 318 (384)
+|-+++.++..+.+..|..+.+....++.+|+||+ .++- -|+|.|..+.+.++|-+|..
T Consensus 593 iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 593 IMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred eccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhcC
Confidence 58999999999999999999998888999999996 3434 79999999999999988653
No 257
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=81.73 E-value=2.1 Score=40.67 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=34.3
Q ss_pred CccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHH
Q 016718 173 NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI 213 (384)
Q Consensus 173 ~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~ 213 (384)
.....+|+.-+...+...+||+|+ +|+++|.||..|+++.
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence 344567899999999999999996 7999999999999753
No 258
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=79.22 E-value=6.7 Score=31.67 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred eEEEEEeeC---CCceEEEEecCCC--CCC-CCCCCCCCCCC--CeEEEEEecCCceEEEEEEE
Q 016718 21 VPVRFIWPN---GGRRVSLSGSFTR--WSE-PMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV 76 (384)
Q Consensus 21 ~~v~f~w~~---~~~~V~v~GsF~~--W~~-~~~m~~~~~~~--~~~~~~~~L~~G~y~YkFiV 76 (384)
.+++|+.+. ..++|.|.-.-+. |.. .++|.+....+ ..|.+++.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 344444432 3578888655443 222 46898764222 35999999888999999999
No 259
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=75.16 E-value=2.3 Score=45.66 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=30.4
Q ss_pred EEEE-eeCCCceEEEEecCCCCCCCC-CCC-CCCCCCCeEEEEEe
Q 016718 23 VRFI-WPNGGRRVSLSGSFTRWSEPM-PMS-PSEGCPAVFQIICR 64 (384)
Q Consensus 23 v~f~-w~~~~~~V~v~GsF~~W~~~~-~m~-~~~~~~~~~~~~~~ 64 (384)
+.|+ |...++.|.++|+||||+... .+. ++ ..|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~--~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKD--DLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCccc--ccceeEEecC
Confidence 5555 777899999999999999853 444 33 3789988766
No 260
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=74.78 E-value=10 Score=43.97 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=41.3
Q ss_pred eEEEEEe-eCCCceEEEEecCCCCCCC----CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCEe
Q 016718 21 VPVRFIW-PNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (384)
Q Consensus 21 ~~v~f~w-~~~~~~V~v~GsF~~W~~~----~~m~~~~~~~~~~~~~~~-L~~G~y~YkFiVDG~w 80 (384)
..|.|.. ...+++|.|+ -|++|... ++|... .+++|+..+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~--~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGR--TGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCC--cCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3578864 5578999997 88888643 466542 3789998875 77887 6999999854
No 261
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=74.22 E-value=11 Score=29.08 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=42.0
Q ss_pred CCceeEEEEEeeCCC---ceEEEEecC-CCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE-c-CEeecC
Q 016718 17 GSILVPVRFIWPNGG---RRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRHD 83 (384)
Q Consensus 17 ~~~~~~v~f~w~~~~---~~V~v~GsF-~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiV-D-G~w~~d 83 (384)
.+...-+.+.+.+++ .+|.|.++= .+|. +|.+.- ...|.+.-.++.|-+.+|+.. | |+++..
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 455667777777653 679999554 4585 588865 679998887777889999988 7 887653
No 262
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=72.62 E-value=5.9 Score=32.73 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=42.3
Q ss_pred CCCCCCCC----CCceeEEEEEeeC-CCceEEEE-ecCCCC----CC-CCCCCCCC--CCCCeEEEEEecCCceEEEEEE
Q 016718 9 GHENSGVV----GSILVPVRFIWPN-GGRRVSLS-GSFTRW----SE-PMPMSPSE--GCPAVFQIICRLPPGHHQYKFY 75 (384)
Q Consensus 9 ~~~~~~~~----~~~~~~v~f~w~~-~~~~V~v~-GsF~~W----~~-~~~m~~~~--~~~~~~~~~~~L~~G~y~YkFi 75 (384)
.|++.+.. ....+.++|+=.. ..++|.|. |+-.+| .. ..+|.+.. +.-..|++++.++..+..|.|.
T Consensus 7 ~H~~~s~y~y~~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~ 86 (120)
T PF02903_consen 7 YHRPDSEYAYPYDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFE 86 (120)
T ss_dssp B--SSTTTEEEECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEE
T ss_pred EecCCCCceEecCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEE
Confidence 46666663 4445566665543 56888885 666655 22 24777643 1235889999999999999999
Q ss_pred E
Q 016718 76 V 76 (384)
Q Consensus 76 V 76 (384)
|
T Consensus 87 l 87 (120)
T PF02903_consen 87 L 87 (120)
T ss_dssp E
T ss_pred E
Confidence 8
No 263
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=69.34 E-value=17 Score=30.76 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=33.8
Q ss_pred eeEEEEEeeCC-CceEEEEecCCCCCC-CCCCCCCCCCCCeEEEEEecCCceEEEE
Q 016718 20 LVPVRFIWPNG-GRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (384)
Q Consensus 20 ~~~v~f~w~~~-~~~V~v~GsF~~W~~-~~~m~~~~~~~~~~~~~~~L~~G~y~Yk 73 (384)
--+|+|+|... +++|...++..-|.. .++... +..|+.+++- ||.|.|+
T Consensus 61 GDTVtw~~~d~~~Hnv~~~~~~~~~g~~~~~~~~----~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 61 GDTVTWVNTDSVGHNVTAVGGMDPEGSGTLKAGI----NESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCEEEEEECCCCCceEEEeCCCCcccccccccCC----CcceEEEecc-cceEEEE
Confidence 35788999886 899999998854443 222221 3467777665 9999985
No 264
>PLN02877 alpha-amylase/limit dextrinase
Probab=68.68 E-value=22 Score=40.06 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=34.3
Q ss_pred EEEEE-eeCCCceEEEEecCCCCC---C--CCCCCCCCCCCCeEEEEEecCCceEEEEEEEc
Q 016718 22 PVRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77 (384)
Q Consensus 22 ~v~f~-w~~~~~~V~v~GsF~~W~---~--~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVD 77 (384)
.++|+ |...+++|.|+- |++|. + ..+|. +.+|+|++.+.-...-+.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEGCYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCCCeeEEEEe
Confidence 46675 777899999984 55553 2 24676 248999999874333345777775
No 265
>PLN03244 alpha-amylase; Provisional
Probab=68.61 E-value=7.7 Score=42.44 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=35.3
Q ss_pred eeEEEEEeeCCCceEEEEecCCCCCCCCC------CCCCCCCCCeEEEEEe--cCCc
Q 016718 20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMP------MSPSEGCPAVFQIICR--LPPG 68 (384)
Q Consensus 20 ~~~v~f~w~~~~~~V~v~GsF~~W~~~~~------m~~~~~~~~~~~~~~~--L~~G 68 (384)
..-..-.|..+|+--.|+|+||||.++.. |.+++ -|+|.+.++ |..|
T Consensus 131 ~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 131 HRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREG 185 (872)
T ss_pred cCceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcC
Confidence 34445569999999999999999998742 44544 689998874 6655
No 266
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=65.57 E-value=11 Score=37.08 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=39.5
Q ss_pred CcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHH
Q 016718 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (384)
Q Consensus 165 ~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~ 215 (384)
..+.+++.++++.+-+....+.. ..+||+|+ +++++|+++...++.+|.
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde-~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAP-CPVAVVDE-DGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccccCccchHHHHHHHHhcCC-CceeEEcC-CCcEEEEecHHHHHHHHh
Confidence 35668888988888877777666 45788985 799999999999988775
No 267
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=57.46 E-value=23 Score=37.03 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=90.0
Q ss_pred HHHHHHhhhhccccccCCCCCcEEEEecCccHH-HHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhccCCCC
Q 016718 145 RDRISSFLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223 (384)
Q Consensus 145 ~~~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~-~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~ 223 (384)
......-|...++.|+|..-..+..++.+..+. +......++|.+.+||.+.+....+|.+=...++.++. ...+
T Consensus 194 ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~----~~~~ 269 (498)
T KOG2118|consen 194 IITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQ----VEVP 269 (498)
T ss_pred HhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhc----cccc
Confidence 334455566778899999888999999999888 55566679999999999975555555431222222211 0001
Q ss_pred CChhhhhhhhHHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEE
Q 016718 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL 303 (384)
Q Consensus 224 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGi 303 (384)
+ . ...+.+ .+-.++.-+..++++.+....|.+.+.|.+-|... . .-+++
T Consensus 270 ~-----~---~~~v~~----------------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~----~---~~~~~ 318 (498)
T KOG2118|consen 270 L-----E---PLPVSE----------------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG----H---VDIFV 318 (498)
T ss_pred c-----c---cccchh----------------hhccccccCCCcccHHHHHHHHhhhhceeEEEecC----C---cceee
Confidence 1 0 011121 13456777899999999999999998888877752 2 46899
Q ss_pred eeHHHHHHHHH
Q 016718 304 ASLSDILKCIC 314 (384)
Q Consensus 304 it~~dil~~l~ 314 (384)
++..|+ +...
T Consensus 319 ~~l~~~-~~~~ 328 (498)
T KOG2118|consen 319 LTLEDL-EEVV 328 (498)
T ss_pred Eeccch-hhhc
Confidence 999998 6555
No 268
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=54.37 E-value=65 Score=34.57 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCeeeeeeCCCCeEEEEeehHHHHHHHHHhcc-CCCCCChhhhhhhhHHHHHHHHHhhccccccCCCC
Q 016718 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT-NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNG 254 (384)
Q Consensus 176 l~~A~~~L~~~~i~~lPV~D~~~~~~vGilT~~Dli~~l~~~~~-~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 254 (384)
+.+.++.|...+ ..+.+.|+ +|.++.+....+++..+..... .+..++++...+.-+.. .
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~---a-------------- 121 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSL---A-------------- 121 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHH---H--------------
Confidence 456667777677 78889996 7999999999998876654322 12222222222221100 0
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhcCCCeeeEEecCCCCCCcccEEEEee
Q 016718 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305 (384)
Q Consensus 255 ~~m~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~~g~~~~lvGiit 305 (384)
......+.|.......+ .+....+...||.|. +| +++|+|+
T Consensus 122 -l~~~~pv~v~g~EH~~~---~~~~~~c~aaPI~d~---~G---~liGvl~ 162 (638)
T PRK11388 122 -AISGQPVKTMGDQHFKQ---ALHNWAFCATPVFDS---KG---RLTGTIA 162 (638)
T ss_pred -HhcCCceEEecHHHHHH---hccCceEEeeEEEcC---CC---CEEEEEE
Confidence 11334455655554444 445557889999984 47 8999996
No 269
>PRK10785 maltodextrin glucosidase; Provisional
Probab=53.02 E-value=53 Score=35.09 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCCCCCCC---CCceeEEEEEeeC-C-CceEEEEecCCCCCCCCCCCCCCCCC--CeEEEEEecC--CceEEEEEEE--c
Q 016718 9 GHENSGVV---GSILVPVRFIWPN-G-GRRVSLSGSFTRWSEPMPMSPSEGCP--AVFQIICRLP--PGHHQYKFYV--D 77 (384)
Q Consensus 9 ~~~~~~~~---~~~~~~v~f~w~~-~-~~~V~v~GsF~~W~~~~~m~~~~~~~--~~~~~~~~L~--~G~y~YkFiV--D 77 (384)
.|.+.+.. ....+.++++-+. . .++|.|.-..++-....+|++....+ ..|+++++++ ++++.|.|.+ +
T Consensus 6 ~h~~~~~~~~~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~ 85 (598)
T PRK10785 6 WHLPVAPFVKQSKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH 85 (598)
T ss_pred ccCCCccccccCCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC
Confidence 45554332 3334555555443 2 47899876666544456888764222 3588899886 7889999988 5
Q ss_pred CE
Q 016718 78 GE 79 (384)
Q Consensus 78 G~ 79 (384)
|+
T Consensus 86 ~~ 87 (598)
T PRK10785 86 DR 87 (598)
T ss_pred CE
Confidence 53
No 270
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.82 E-value=9.7 Score=40.29 Aligned_cols=64 Identities=22% Similarity=0.443 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC----EeecCCCCCeeeCCCCCeeeEEEeccCCCCCC
Q 016718 42 RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG----EWRHDENQPHVSGNYGVVNCVYIAVPQPDMVP 110 (384)
Q Consensus 42 ~W~~~~~m~~~~~~~~~~~~~~~L~~G-~y~YkFiVDG----~w~~d~~~p~~~d~~G~~nNvi~v~~~~~~~p 110 (384)
-|.+ +.+.|..-.+|.|.+.|+++|| .|.|+|.|++ -|-+......-.+ |..-- |.| .+....|
T Consensus 84 hWhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~--G~~G~-liI-~~~~~~p 152 (563)
T KOG1263|consen 84 HWHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT--GVFGA-LII-NPRPGLP 152 (563)
T ss_pred Eecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc--CceeE-EEE-cCCccCC
Confidence 3765 5555554446788888999999 5999999984 3666665555433 43443 344 3334444
No 271
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=47.51 E-value=76 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=24.8
Q ss_pred eeEEEEEeeCCCceEEEE-ecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 016718 20 LVPVRFIWPNGGRRVSLS-GSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (384)
Q Consensus 20 ~~~v~f~w~~~~~~V~v~-GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~Yk 73 (384)
--+|+|+|...++.|... +..- +... .... +.+..|+.++. .+|.|.|.
T Consensus 22 GdTV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 22 GDTVTFVPTDKGHNVETIKGMIP-EGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCEEEEEECCCCeeEEEccCCCc-CCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 357788888877766642 2111 1110 1111 11345666665 56777773
No 272
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=44.98 E-value=75 Score=25.96 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=39.1
Q ss_pred eeEEEEEeeCC--CceEEEEecCCCCCCCCCCCC---------C-CCCCCeEEEEEecCCc--------eEEEEEEEcCE
Q 016718 20 LVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMSP---------S-EGCPAVFQIICRLPPG--------HHQYKFYVDGE 79 (384)
Q Consensus 20 ~~~v~f~w~~~--~~~V~v~GsF~~W~~~~~m~~---------~-~~~~~~~~~~~~L~~G--------~y~YkFiVDG~ 79 (384)
...-++.-.+- .++|.|.=+|++|.....+.. . ......|..++.||+. ++--+|.++|.
T Consensus 20 ~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 20 SLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred EEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 34445555553 378999999999985433221 0 1123578888988754 36678888986
Q ss_pred eecCC
Q 016718 80 WRHDE 84 (384)
Q Consensus 80 w~~d~ 84 (384)
..-|.
T Consensus 100 eyWDN 104 (113)
T PF03370_consen 100 EYWDN 104 (113)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 44333
No 273
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=43.17 E-value=54 Score=32.86 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=27.7
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCeEEEEEe--cCCceEEEEEEEcCE
Q 016718 35 SLSGSFTRWSEPMPMSPSEGCPAVFQIICR--LPPGHHQYKFYVDGE 79 (384)
Q Consensus 35 ~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~--L~~G~y~YkFiVDG~ 79 (384)
.+.|+|.+ ....+... ..+|.|+..++ .+||.|+.++.++|.
T Consensus 152 ~vvg~f~D--dG~g~DE~-p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 35666652 22223221 23899998865 589999999999983
No 274
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=36.99 E-value=35 Score=27.18 Aligned_cols=16 Identities=19% Similarity=0.440 Sum_probs=9.6
Q ss_pred CeEEEEE-ecCCceEEE
Q 016718 57 AVFQIIC-RLPPGHHQY 72 (384)
Q Consensus 57 ~~~~~~~-~L~~G~y~Y 72 (384)
..+++++ .++||+|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4566664 789999887
No 275
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=36.12 E-value=74 Score=28.73 Aligned_cols=40 Identities=30% Similarity=0.729 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEec-CCceEEEEEEE--c--CEeecC
Q 016718 41 TRWSEPMPMSPSEGCPAVFQIICRL-PPGHHQYKFYV--D--GEWRHD 83 (384)
Q Consensus 41 ~~W~~~~~m~~~~~~~~~~~~~~~L-~~G~y~YkFiV--D--G~w~~d 83 (384)
..|+. .||.... +..|...+.+ .+|.|+|+..- | +.|+++
T Consensus 55 ~~w~~-vpM~~~g--nDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLG--NDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EEST--S-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCC--CCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 45976 8999864 8899999887 45999998763 4 345553
No 276
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.51 E-value=38 Score=36.31 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=21.6
Q ss_pred CCceEEEEEEEcCEee---cCCCCCeeeC
Q 016718 66 PPGHHQYKFYVDGEWR---HDENQPHVSG 91 (384)
Q Consensus 66 ~~G~y~YkFiVDG~w~---~d~~~p~~~d 91 (384)
..|.|+|||.++|+|+ .|+..|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 4599999999999994 6778888665
No 277
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=31.74 E-value=91 Score=24.45 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCceEEEEEEEcCEeecCCCCC
Q 016718 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQP 87 (384)
Q Consensus 56 ~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~~p 87 (384)
+|.=++.++|+||+|...-+. |.+.+-+..|
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~ 80 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDP 80 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCC
Confidence 577788899999999999888 3345555544
No 278
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=30.60 E-value=2.3e+02 Score=23.37 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred eEEEEEeeC--CCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 016718 21 VPVRFIWPN--GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (384)
Q Consensus 21 ~~v~f~w~~--~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~Yk 73 (384)
-+|+|+|.. .++.|...+. ..|.... +.. ..+..|+.++. .||.|.|.
T Consensus 50 dTVtw~~~~d~~~HnV~s~~~-~~f~s~~-~~~--~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 50 TTVVWEWTGEGGGHNVVSDGD-GDLDESE-RVS--EEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CEEEEEECCCCCCEEEEECCC-CCccccc-ccc--CCCCEEEEEec-CCcEEEEE
Confidence 356666654 3466654311 2243211 111 11346777774 67888874
No 279
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=28.78 E-value=75 Score=25.51 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeee---eeCCCCe----EEEEeehHHHHHHHHH
Q 016718 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPL---WDDFKGR----FVGVLSALDFILILRE 216 (384)
Q Consensus 149 ~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV---~D~~~~~----~vGilT~~Dli~~l~~ 216 (384)
+..|.+-.+.+.+-. ..|.+..+.+=.++.+++...++.++|. +|+.+|+ +.|-++..+|+..|.+
T Consensus 37 ~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 37 RDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred HHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 344555555555533 3344444433346777777777777765 5653454 4588888888877654
No 280
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=25.89 E-value=1.9e+02 Score=21.92 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=24.1
Q ss_pred EEEEEeeCC-CceEEE-EecCCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 016718 22 PVRFIWPNG-GRRVSL-SGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (384)
Q Consensus 22 ~v~f~w~~~-~~~V~v-~GsF~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~Yk 73 (384)
+++|++... +++|.. .|.+.++.-.-++-. .+..|+.+.. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~---~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMK---KEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccC---CCCEEEEECC-CCEEEEEE
Confidence 456665543 567654 345544332112211 1346666654 57877774
No 281
>PRK03972 ribosomal biogenesis protein; Validated
Probab=25.60 E-value=1.6e+02 Score=27.02 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=42.9
Q ss_pred HHHHhhhhccccccCCCCCcEEEEecCccHHHHHHHHHHcCCCeeeeeeCCCCeEEEEe
Q 016718 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVL 205 (384)
Q Consensus 147 ~~~~~l~~~~~~dvmp~s~~vv~i~~~~~l~~A~~~L~~~~i~~lPV~D~~~~~~vGil 205 (384)
..++|.+. ...++|.+. ..-....++.+.++.-.+++...+.|+++..|+.-|++
T Consensus 13 rtr~F~ke--L~~v~Pns~--~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~ 67 (208)
T PRK03972 13 RTRSFGHD--LERVFPNSL--YLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMT 67 (208)
T ss_pred HHHHHHHH--HHHhCCCCE--EEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEE
Confidence 34566665 455677763 36677889999999999999999999998778777765
No 282
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.93 E-value=59 Score=23.16 Aligned_cols=23 Identities=35% Similarity=0.797 Sum_probs=13.4
Q ss_pred EEecCCceEEEEEEE---cCEeecCC
Q 016718 62 ICRLPPGHHQYKFYV---DGEWRHDE 84 (384)
Q Consensus 62 ~~~L~~G~y~YkFiV---DG~w~~d~ 84 (384)
--.||||.|.++-.+ +|.|..+.
T Consensus 33 ~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 33 YTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEeCCCEEEEEEEEEECCCCCcCccc
Confidence 368999999988776 46776543
No 283
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.77 E-value=6.2e+02 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.454 Sum_probs=23.4
Q ss_pred eeEEEEEeeCCC------ceEEEEecCCCCCCCCCCCCCC
Q 016718 20 LVPVRFIWPNGG------RRVSLSGSFTRWSEPMPMSPSE 53 (384)
Q Consensus 20 ~~~v~f~w~~~~------~~V~v~GsF~~W~~~~~m~~~~ 53 (384)
..+.+|+|...+ =+.|| +=.+|++..||++++
T Consensus 113 sG~~~f~w~~TapH~t~~w~yYi--TK~~wdpnkPLt~~d 150 (308)
T COG3397 113 SGPQTFVWKATAPHNTAYWKYYI--TKPGWDPNKPLTWDD 150 (308)
T ss_pred CCceEEEEEeecCCCCcceEEEE--CCCCCCCCCCccHHh
Confidence 567899998743 24677 557899988888764
No 284
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=22.39 E-value=74 Score=25.87 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=19.0
Q ss_pred CCeEEEEEecCCceEEEEEEEcCEeecCCC
Q 016718 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDEN 85 (384)
Q Consensus 56 ~~~~~~~~~L~~G~y~YkFiVDG~w~~d~~ 85 (384)
.-.|... |.|-|+|.|. +|.|+++.+
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCC
Confidence 3467665 4687888885 999998754
No 285
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=22.35 E-value=55 Score=26.58 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=13.7
Q ss_pred ceEEEEEEEcCEeecCCC
Q 016718 68 GHHQYKFYVDGEWRHDEN 85 (384)
Q Consensus 68 G~y~YkFiVDG~w~~d~~ 85 (384)
|-|+|.|. ||.|++..+
T Consensus 67 G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 67 GGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCccceec-CCEEEECCC
Confidence 77888884 999998754
No 286
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.32 E-value=84 Score=25.63 Aligned_cols=19 Identities=26% Similarity=0.873 Sum_probs=15.7
Q ss_pred C-CceEEEEEEEcCEeecCCC
Q 016718 66 P-PGHHQYKFYVDGEWRHDEN 85 (384)
Q Consensus 66 ~-~G~y~YkFiVDG~w~~d~~ 85 (384)
| .|-|+|.|. +|.|+++.+
T Consensus 67 pisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 67 PISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp TTTEEEEEEEE-SSSEEETTT
T ss_pred ccCCceEEEEc-CCEEEECCC
Confidence 5 688899888 999998764
No 287
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=22.13 E-value=1.5e+02 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=12.0
Q ss_pred eEEEEEeeC-CCceEEEEe
Q 016718 21 VPVRFIWPN-GGRRVSLSG 38 (384)
Q Consensus 21 ~~v~f~w~~-~~~~V~v~G 38 (384)
-+|+|.|.. .++++.+.-
T Consensus 25 ~tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 25 DTVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEEESSSSBEEEEET
T ss_pred CEEEEEECCCCCceEEEec
Confidence 367788864 457777655
No 288
>PRK10301 hypothetical protein; Provisional
Probab=21.49 E-value=4e+02 Score=22.15 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=26.8
Q ss_pred ceEEEEecCC-CCCCCCCCCCCCCCCCeEEEEE--ecCCceEEEEEEE---cCE
Q 016718 32 RRVSLSGSFT-RWSEPMPMSPSEGCPAVFQIIC--RLPPGHHQYKFYV---DGE 79 (384)
Q Consensus 32 ~~V~v~GsF~-~W~~~~~m~~~~~~~~~~~~~~--~L~~G~y~YkFiV---DG~ 79 (384)
..+.|.+.-- .|... +-.........+.+.+ .|++|.|.-.|.| ||.
T Consensus 61 s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 61 SGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred cEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 5678875532 23322 1111122244566666 3889999999887 664
No 289
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.73 E-value=3e+02 Score=19.83 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=27.9
Q ss_pred EEEEeeCCCceEEEEecCCCCCCCCCCCCCCCCCCeEEEEE-ecCCceEEEEEEEcC
Q 016718 23 VRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVDG 78 (384)
Q Consensus 23 v~f~w~~~~~~V~v~GsF~~W~~~~~m~~~~~~~~~~~~~~-~L~~G~y~YkFiVDG 78 (384)
+.+.-...+-+|+|-|.+-+ ..|+ .+ .|++|.|.+++.-+|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G---~tp~------------~~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIG---TTPL------------TLKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEECCCCEEEECCEEec---cCcc------------eeeecCCccEEEEEEECC
Confidence 34444456788999887665 2221 22 388999999999988
No 290
>PLN03023 Expansin-like B1; Provisional
Probab=20.64 E-value=3.2e+02 Score=25.85 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCceeEEEEEeeCCC---ceEEEEec-CCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc
Q 016718 17 GSILVPVRFIWPNGG---RRVSLSGS-FTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77 (384)
Q Consensus 17 ~~~~~~v~f~w~~~~---~~V~v~Gs-F~~W~~~~~m~~~~~~~~~~~~~~~L~~G~y~YkFiVD 77 (384)
.+..-.+.+.+.++. .+|.|-|+ =.+|. +|.++- ...|+..-. +.|.+.++|.|.
T Consensus 158 ~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnw--Ga~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 158 FPDYLAIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAY--GAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred CCceEEEEEEEcCCCccEEEEEEEecCCCCce---ECccCC--cceeEcCCC-CCCceeEEEEEE
Confidence 344566677776542 67888885 34785 588864 468987644 468999999884
No 291
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=20.31 E-value=92 Score=28.67 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=10.2
Q ss_pred EE-cCE--eecCCCCCeee
Q 016718 75 YV-DGE--WRHDENQPHVS 90 (384)
Q Consensus 75 iV-DG~--w~~d~~~p~~~ 90 (384)
+| ||+ |.+|++...++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 44 773 77877766543
No 292
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.08 E-value=75 Score=25.46 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=13.9
Q ss_pred CceEEEEEEEcCEeecCCC
Q 016718 67 PGHHQYKFYVDGEWRHDEN 85 (384)
Q Consensus 67 ~G~y~YkFiVDG~w~~d~~ 85 (384)
.|-|+|.| ++|.|++..+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 37788888 4899998654
Done!