Query 016719
Match_columns 384
No_of_seqs 262 out of 1032
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:22:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 1.6E-44 3.5E-49 353.8 10.1 187 45-231 11-209 (304)
2 smart00415 HSF heat shock fact 100.0 1.2E-34 2.7E-39 243.9 6.2 94 45-138 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 8.9E-35 1.9E-39 243.3 4.0 93 48-140 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 2.5E-33 5.4E-38 271.5 7.4 140 45-184 9-167 (282)
5 PF00178 Ets: Ets-domain; Int 95.9 0.0048 1E-07 50.6 2.0 57 52-108 7-65 (85)
6 PF03310 Cauli_DNA-bind: Cauli 94.6 0.086 1.9E-06 45.9 5.8 73 173-248 2-75 (121)
7 smart00413 ETS erythroblast tr 93.9 0.081 1.8E-06 43.6 4.1 56 53-108 8-65 (87)
8 KOG3806 Predicted transcriptio 89.4 0.41 8.8E-06 44.3 3.8 58 50-107 72-131 (177)
9 PF06005 DUF904: Protein of un 86.4 4.8 0.0001 32.0 7.7 46 161-206 23-68 (72)
10 COG3074 Uncharacterized protei 82.0 9.4 0.0002 30.4 7.4 42 161-202 23-64 (79)
11 PRK15422 septal ring assembly 81.3 6.5 0.00014 31.9 6.5 42 161-202 23-71 (79)
12 PF02183 HALZ: Homeobox associ 80.5 7.2 0.00016 28.3 5.9 41 161-201 3-43 (45)
13 PF04340 DUF484: Protein of un 78.4 9.9 0.00021 35.9 8.0 75 120-221 17-91 (225)
14 TIGR02449 conserved hypothetic 76.4 32 0.0007 27.0 8.8 54 162-215 6-59 (65)
15 PF11932 DUF3450: Protein of u 75.9 24 0.00052 33.9 9.9 59 161-219 54-112 (251)
16 TIGR03752 conj_TIGR03752 integ 74.9 18 0.0004 38.4 9.3 56 160-215 70-126 (472)
17 TIGR02449 conserved hypothetic 74.4 12 0.00026 29.3 6.0 43 163-205 21-63 (65)
18 TIGR02894 DNA_bind_RsfA transc 72.0 27 0.00059 32.1 8.6 54 165-218 99-152 (161)
19 PF10224 DUF2205: Predicted co 70.9 51 0.0011 26.8 9.1 55 164-218 9-64 (80)
20 PF08826 DMPK_coil: DMPK coile 70.8 30 0.00064 26.8 7.4 47 161-211 6-52 (61)
21 PF12325 TMF_TATA_bd: TATA ele 70.5 31 0.00067 30.1 8.4 53 160-212 34-89 (120)
22 PF10473 CENP-F_leu_zip: Leuci 70.1 35 0.00075 30.6 8.7 58 160-217 56-113 (140)
23 PF12329 TMF_DNA_bd: TATA elem 69.6 34 0.00073 27.2 7.7 55 161-215 17-71 (74)
24 PF11932 DUF3450: Protein of u 61.5 87 0.0019 30.1 10.4 69 161-232 47-115 (251)
25 PF10168 Nup88: Nuclear pore c 58.5 47 0.001 37.3 8.9 60 160-219 562-621 (717)
26 PF06005 DUF904: Protein of un 58.4 92 0.002 24.7 9.2 47 163-209 11-57 (72)
27 PF05377 FlaC_arch: Flagella a 55.9 78 0.0017 24.1 7.0 33 168-200 5-37 (55)
28 PF14282 FlxA: FlxA-like prote 54.4 82 0.0018 26.6 7.9 45 161-205 17-65 (106)
29 PF04111 APG6: Autophagy prote 52.6 70 0.0015 32.2 8.4 50 160-209 47-96 (314)
30 PF02183 HALZ: Homeobox associ 51.2 37 0.00081 24.6 4.5 32 161-192 10-41 (45)
31 PRK00888 ftsB cell division pr 51.0 53 0.0011 27.8 6.2 34 164-197 28-61 (105)
32 PF07676 PD40: WD40-like Beta 49.3 13 0.00027 24.9 1.8 23 56-78 4-26 (39)
33 PRK06800 fliH flagellar assemb 48.7 1.3E+02 0.0028 28.5 8.8 58 161-218 36-111 (228)
34 PF08581 Tup_N: Tup N-terminal 48.1 1.4E+02 0.003 24.2 7.9 47 164-210 5-58 (79)
35 PRK10963 hypothetical protein; 47.3 81 0.0018 29.9 7.6 72 120-219 14-86 (223)
36 KOG4005 Transcription factor X 47.2 86 0.0019 30.8 7.6 53 160-212 94-151 (292)
37 PF06156 DUF972: Protein of un 46.4 98 0.0021 26.4 7.1 14 190-203 42-55 (107)
38 KOG4196 bZIP transcription fac 45.8 74 0.0016 28.3 6.3 42 166-214 77-118 (135)
39 PF02403 Seryl_tRNA_N: Seryl-t 45.6 1.1E+02 0.0025 25.2 7.4 50 160-209 40-99 (108)
40 PRK09039 hypothetical protein; 45.5 1.2E+02 0.0027 30.8 9.0 50 169-218 136-185 (343)
41 PF04728 LPP: Lipoprotein leuc 45.1 1.3E+02 0.0029 22.9 6.8 40 162-201 9-48 (56)
42 PRK09039 hypothetical protein; 44.9 1.4E+02 0.003 30.4 9.2 47 162-208 122-168 (343)
43 PHA01819 hypothetical protein 43.7 32 0.00068 29.2 3.6 30 195-227 74-103 (129)
44 PF10779 XhlA: Haemolysin XhlA 43.4 1.6E+02 0.0034 23.0 8.9 54 162-215 5-58 (71)
45 PF05377 FlaC_arch: Flagella a 43.3 1.2E+02 0.0025 23.1 6.3 41 174-214 4-44 (55)
46 PF10018 Med4: Vitamin-D-recep 43.3 2.7E+02 0.0058 25.7 10.4 57 168-228 7-63 (188)
47 COG3074 Uncharacterized protei 42.9 1.7E+02 0.0037 23.5 7.3 41 170-210 18-58 (79)
48 PF10805 DUF2730: Protein of u 42.7 1.3E+02 0.0029 25.3 7.4 48 163-210 42-91 (106)
49 KOG4460 Nuclear pore complex, 42.7 1.4E+02 0.003 32.8 8.9 61 161-221 586-646 (741)
50 PRK11637 AmiB activator; Provi 42.4 1.5E+02 0.0032 30.8 9.2 26 176-201 95-120 (428)
51 KOG0977 Nuclear envelope prote 42.1 1.4E+02 0.0031 32.5 9.1 70 160-229 166-248 (546)
52 PRK10803 tol-pal system protei 41.9 2E+02 0.0043 28.1 9.5 38 176-213 60-97 (263)
53 PF11414 Suppressor_APC: Adeno 41.8 98 0.0021 25.4 6.1 45 159-203 3-47 (84)
54 PRK14127 cell division protein 41.1 82 0.0018 27.1 5.9 37 165-201 32-68 (109)
55 PF04156 IncA: IncA protein; 40.9 2E+02 0.0044 26.0 8.9 59 160-218 92-150 (191)
56 smart00338 BRLZ basic region l 40.6 69 0.0015 24.2 4.9 26 161-186 31-56 (65)
57 COG5481 Uncharacterized conser 40.5 1.7E+02 0.0038 22.7 7.0 28 171-198 5-32 (67)
58 KOG4196 bZIP transcription fac 40.2 1.4E+02 0.003 26.6 7.2 17 177-193 47-63 (135)
59 COG1579 Zn-ribbon protein, pos 39.9 1.1E+02 0.0023 29.9 7.2 46 162-207 37-82 (239)
60 PF08317 Spc7: Spc7 kinetochor 39.6 1.9E+02 0.0042 28.9 9.3 43 163-205 209-251 (325)
61 smart00787 Spc7 Spc7 kinetocho 38.6 2.1E+02 0.0045 28.9 9.3 49 163-211 204-252 (312)
62 PF10779 XhlA: Haemolysin XhlA 38.4 1.9E+02 0.0041 22.5 7.9 55 174-228 3-57 (71)
63 PF11559 ADIP: Afadin- and alp 38.2 2.8E+02 0.006 24.3 9.5 45 162-206 65-109 (151)
64 PRK11637 AmiB activator; Provi 38.1 1.7E+02 0.0038 30.2 8.9 44 163-206 75-118 (428)
65 PRK13729 conjugal transfer pil 38.0 1.7E+02 0.0037 31.4 8.8 46 169-214 75-120 (475)
66 PRK10884 SH3 domain-containing 37.9 1E+02 0.0022 29.3 6.5 27 107-133 65-93 (206)
67 PF09304 Cortex-I_coil: Cortex 37.8 2.7E+02 0.0058 24.0 8.5 55 160-214 20-74 (107)
68 PF00038 Filament: Intermediat 37.5 2.1E+02 0.0045 28.0 9.0 48 161-208 214-261 (312)
69 COG3159 Uncharacterized protei 36.7 87 0.0019 30.1 5.8 76 117-219 12-87 (218)
70 TIGR00219 mreC rod shape-deter 36.7 1.1E+02 0.0023 30.4 6.8 24 164-187 67-90 (283)
71 PF11559 ADIP: Afadin- and alp 35.5 3E+02 0.0066 24.1 8.9 48 161-208 57-104 (151)
72 PRK10803 tol-pal system protei 35.5 1.4E+02 0.003 29.2 7.3 53 160-212 37-89 (263)
73 PF10211 Ax_dynein_light: Axon 35.4 1.9E+02 0.0041 26.9 7.9 24 162-185 126-149 (189)
74 PF07106 TBPIP: Tat binding pr 35.3 1.7E+02 0.0037 26.2 7.4 58 161-218 77-136 (169)
75 PF07407 Seadorna_VP6: Seadorn 35.2 1.9E+02 0.004 29.8 8.1 28 158-185 34-61 (420)
76 COG1579 Zn-ribbon protein, pos 35.1 2.6E+02 0.0055 27.4 8.9 47 160-206 93-139 (239)
77 PF04977 DivIC: Septum formati 34.7 1.8E+02 0.004 22.1 6.6 11 219-229 52-62 (80)
78 PF07407 Seadorna_VP6: Seadorn 34.5 1.3E+02 0.0028 30.9 6.9 55 162-216 31-87 (420)
79 PF08614 ATG16: Autophagy prot 34.2 2.4E+02 0.0052 26.0 8.4 22 190-211 157-178 (194)
80 PF10226 DUF2216: Uncharacteri 33.4 2.5E+02 0.0055 26.6 8.2 23 162-184 54-76 (195)
81 PF04977 DivIC: Septum formati 33.2 1.3E+02 0.0029 22.9 5.5 32 165-196 19-50 (80)
82 TIGR02132 phaR_Bmeg polyhydrox 32.4 2.2E+02 0.0048 26.7 7.6 69 160-228 83-151 (189)
83 PF07106 TBPIP: Tat binding pr 32.1 1.7E+02 0.0037 26.3 6.9 52 160-211 83-136 (169)
84 PRK13169 DNA replication intia 31.5 1.9E+02 0.004 25.0 6.5 22 164-185 9-30 (110)
85 COG4942 Membrane-bound metallo 31.4 2.6E+02 0.0056 29.6 8.8 44 161-204 64-107 (420)
86 PHA02047 phage lambda Rz1-like 31.1 2.5E+02 0.0055 23.8 7.0 44 176-219 33-76 (101)
87 PF11853 DUF3373: Protein of u 31.0 45 0.00099 35.7 3.3 37 161-205 23-59 (489)
88 PF07200 Mod_r: Modifier of ru 31.0 2.6E+02 0.0056 24.4 7.7 46 165-210 43-88 (150)
89 PF13094 CENP-Q: CENP-Q, a CEN 30.9 2.7E+02 0.0058 24.8 7.9 10 174-183 45-54 (160)
90 TIGR03752 conj_TIGR03752 integ 30.7 3E+02 0.0065 29.5 9.2 41 161-201 64-104 (472)
91 PRK05431 seryl-tRNA synthetase 30.6 1.9E+02 0.0041 30.3 7.8 69 160-228 39-111 (425)
92 PF07798 DUF1640: Protein of u 30.5 2.6E+02 0.0056 25.5 7.8 15 99-113 6-20 (177)
93 PF14817 HAUS5: HAUS augmin-li 30.4 2.7E+02 0.006 30.9 9.2 39 172-210 81-119 (632)
94 PF04880 NUDE_C: NUDE protein, 30.3 26 0.00057 32.3 1.2 32 170-202 24-55 (166)
95 PF08227 DASH_Hsk3: DASH compl 30.1 2.2E+02 0.0048 20.8 6.2 37 181-218 6-42 (45)
96 PF12325 TMF_TATA_bd: TATA ele 30.0 3.7E+02 0.0081 23.4 8.8 45 161-205 21-65 (120)
97 PF13874 Nup54: Nucleoporin co 29.5 3.5E+02 0.0076 23.8 8.3 44 163-206 44-87 (141)
98 PF07888 CALCOCO1: Calcium bin 29.5 2.2E+02 0.0049 31.0 8.2 41 162-202 142-182 (546)
99 PF04201 TPD52: Tumour protein 29.1 1.7E+02 0.0038 26.9 6.3 38 162-199 28-65 (162)
100 COG3290 CitA Signal transducti 29.0 5.3E+02 0.011 28.2 10.8 81 158-238 313-405 (537)
101 PRK13182 racA polar chromosome 27.9 1.9E+02 0.0041 26.8 6.4 23 120-142 34-56 (175)
102 PF09726 Macoilin: Transmembra 27.8 2.9E+02 0.0062 31.1 8.9 26 160-185 422-447 (697)
103 PF10146 zf-C4H2: Zinc finger- 27.8 4E+02 0.0088 25.7 8.9 56 164-219 33-88 (230)
104 PF05524 PEP-utilisers_N: PEP- 27.8 1.5E+02 0.0033 24.9 5.5 56 177-232 35-91 (123)
105 PF06156 DUF972: Protein of un 27.6 3.7E+02 0.0081 22.9 7.7 27 163-189 8-34 (107)
106 PRK13182 racA polar chromosome 27.2 1.4E+02 0.0029 27.7 5.4 17 190-206 124-140 (175)
107 KOG3119 Basic region leucine z 27.0 3.3E+02 0.0072 26.8 8.4 59 160-218 191-249 (269)
108 PLN02320 seryl-tRNA synthetase 26.5 2.5E+02 0.0053 30.4 7.8 52 160-211 104-164 (502)
109 KOG4571 Activating transcripti 26.5 2.8E+02 0.006 28.0 7.6 46 160-210 222-267 (294)
110 TIGR00414 serS seryl-tRNA synt 26.5 3E+02 0.0064 28.8 8.3 69 160-228 41-114 (418)
111 COG3883 Uncharacterized protei 26.0 3.3E+02 0.0072 27.0 8.1 29 172-200 68-96 (265)
112 PRK15396 murein lipoprotein; P 25.8 3.2E+02 0.0069 22.2 6.6 38 163-200 25-62 (78)
113 PF09787 Golgin_A5: Golgin sub 25.8 2.7E+02 0.0058 29.8 8.1 40 163-202 274-313 (511)
114 PF02388 FemAB: FemAB family; 25.6 4.6E+02 0.01 27.1 9.5 58 158-215 237-297 (406)
115 TIGR02894 DNA_bind_RsfA transc 25.6 2.6E+02 0.0055 25.8 6.7 36 174-209 101-136 (161)
116 PLN02678 seryl-tRNA synthetase 25.5 2.7E+02 0.0058 29.6 7.8 23 160-182 44-66 (448)
117 PF07200 Mod_r: Modifier of ru 25.2 4.6E+02 0.01 22.8 8.8 30 161-190 53-82 (150)
118 PF10458 Val_tRNA-synt_C: Valy 25.1 2.2E+02 0.0047 21.8 5.4 12 214-225 23-34 (66)
119 COG4942 Membrane-bound metallo 24.8 4.1E+02 0.009 28.1 8.9 38 166-203 41-78 (420)
120 PF08606 Prp19: Prp19/Pso4-lik 24.8 3.6E+02 0.0079 21.5 8.3 37 159-195 4-40 (70)
121 COG1382 GimC Prefoldin, chaper 24.7 2.7E+02 0.0059 24.4 6.4 39 162-200 69-107 (119)
122 PRK13169 DNA replication intia 24.6 4.5E+02 0.0099 22.6 7.7 9 193-201 45-53 (110)
123 PRK15396 murein lipoprotein; P 24.6 3.8E+02 0.0083 21.7 8.1 44 160-203 29-72 (78)
124 PRK00888 ftsB cell division pr 24.6 2E+02 0.0044 24.2 5.6 8 221-228 64-71 (105)
125 PF10473 CENP-F_leu_zip: Leuci 24.5 5.2E+02 0.011 23.2 9.5 69 161-229 22-90 (140)
126 PF06785 UPF0242: Uncharacteri 24.4 3.3E+02 0.0072 28.1 7.8 44 163-206 99-142 (401)
127 smart00338 BRLZ basic region l 24.4 3.1E+02 0.0067 20.6 6.2 23 176-198 32-54 (65)
128 cd00632 Prefoldin_beta Prefold 24.1 2.9E+02 0.0064 22.8 6.4 44 160-203 60-103 (105)
129 PF10805 DUF2730: Protein of u 24.1 4.1E+02 0.0088 22.3 7.3 32 177-208 65-96 (106)
130 PF12958 DUF3847: Protein of u 23.9 4.2E+02 0.009 21.9 7.9 29 175-203 6-34 (86)
131 PHA01750 hypothetical protein 23.7 2.8E+02 0.006 22.1 5.6 27 174-200 39-65 (75)
132 PF07889 DUF1664: Protein of u 23.6 3.7E+02 0.0081 23.7 7.2 6 224-229 108-113 (126)
133 PF08317 Spc7: Spc7 kinetochor 23.5 4.7E+02 0.01 26.2 8.9 23 162-184 176-198 (325)
134 KOG4010 Coiled-coil protein TP 23.4 2.5E+02 0.0054 26.7 6.3 39 162-200 43-81 (208)
135 PF06160 EzrA: Septation ring 23.2 3E+02 0.0065 29.9 7.9 66 160-225 310-413 (560)
136 PF14077 WD40_alt: Alternative 23.2 98 0.0021 22.8 2.8 33 189-221 16-48 (48)
137 PF09726 Macoilin: Transmembra 23.2 4.1E+02 0.0088 29.9 9.0 57 161-217 416-479 (697)
138 PF08172 CASP_C: CASP C termin 22.9 3.4E+02 0.0075 26.5 7.5 41 161-201 84-124 (248)
139 PF04420 CHD5: CHD5-like prote 22.6 4.5E+02 0.0097 23.7 7.8 29 185-213 74-102 (161)
140 PRK03947 prefoldin subunit alp 22.6 3.6E+02 0.0078 23.3 7.0 46 160-205 91-136 (140)
141 KOG0804 Cytoplasmic Zn-finger 22.4 3.6E+02 0.0079 28.8 7.9 47 164-210 348-394 (493)
142 PF08826 DMPK_coil: DMPK coile 22.4 3.7E+02 0.008 20.8 7.0 38 162-199 17-54 (61)
143 PF10883 DUF2681: Protein of u 22.4 4E+02 0.0087 22.1 6.7 38 163-200 23-60 (87)
144 PF14817 HAUS5: HAUS augmin-li 22.2 5.2E+02 0.011 28.8 9.5 59 161-219 84-142 (632)
145 PRK13922 rod shape-determining 22.2 2.6E+02 0.0057 27.0 6.6 23 164-186 70-92 (276)
146 COG5613 Uncharacterized conser 22.1 5.3E+02 0.012 26.8 8.8 43 160-202 327-369 (400)
147 PF04012 PspA_IM30: PspA/IM30 21.0 5.1E+02 0.011 24.0 8.1 33 178-210 106-138 (221)
148 PF10458 Val_tRNA-synt_C: Valy 20.8 3.9E+02 0.0084 20.4 7.9 26 161-186 2-27 (66)
149 PF04156 IncA: IncA protein; 20.7 6.3E+02 0.014 22.7 9.1 43 162-204 108-150 (191)
150 PF12709 Kinetocho_Slk19: Cent 20.6 3.1E+02 0.0068 22.8 5.7 25 162-186 48-72 (87)
151 PF01920 Prefoldin_2: Prefoldi 20.6 3.8E+02 0.0081 21.5 6.4 41 161-201 60-100 (106)
152 PRK08032 fliD flagellar cappin 20.5 3.4E+02 0.0075 28.6 7.5 29 173-201 409-437 (462)
153 PF11285 DUF3086: Protein of u 20.3 2.7E+02 0.0058 27.7 6.0 56 164-219 5-61 (283)
154 KOG4497 Uncharacterized conser 20.2 1.1E+02 0.0023 31.8 3.4 37 48-84 162-202 (447)
155 PF12269 zf-CpG_bind_C: CpG bi 20.2 2.4E+02 0.0053 27.5 5.8 27 193-219 38-64 (236)
156 PF12718 Tropomyosin_1: Tropom 20.1 5E+02 0.011 23.1 7.4 50 161-210 33-82 (143)
157 KOG1760 Molecular chaperone Pr 20.1 3.8E+02 0.0083 23.8 6.4 40 160-199 78-117 (131)
158 PF06216 RTBV_P46: Rice tungro 20.0 2.5E+02 0.0055 27.9 5.8 45 160-204 68-112 (389)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=1.6e-44 Score=353.77 Aligned_cols=187 Identities=47% Similarity=0.833 Sum_probs=171.2
Q ss_pred CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC--CCCccccCC
Q 016719 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD--PDRWEFANE 122 (384)
Q Consensus 45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~~eF~h~ 122 (384)
++++|+.|||.||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+|||||+. +++|+|+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CcCcCcccchhhhcccccCCcccc---c-cC------CccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 123 GFLGGQKHLLKTIKRRRHVSQSMQ---Q-RG------GEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (384)
Q Consensus 123 ~F~Rg~~~LL~~IkRk~~~s~~~~---~-~~------~~~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~q 192 (384)
+|+||+++||++|+||++...... . .. ...++......+..++.+|+++++.|+.|+.+||+++..++.+
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999998854421 1 10 1122334556889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHhhH
Q 016719 193 LSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 231 (384)
Q Consensus 193 l~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~~~ 231 (384)
++.+.+++...+.+|.+|+.|++++++.|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998754
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=1.2e-34 Score=243.86 Aligned_cols=94 Identities=65% Similarity=1.213 Sum_probs=90.7
Q ss_pred CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccCC----------
Q 016719 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDP---------- 114 (384)
Q Consensus 45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~---------- 114 (384)
.+|+|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCccccCCCcCcCcccchhhhccc
Q 016719 115 -DRWEFANEGFLGGQKHLLKTIKRR 138 (384)
Q Consensus 115 -~~~eF~h~~F~Rg~~~LL~~IkRk 138 (384)
+.|+|+||+|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=8.9e-35 Score=243.31 Aligned_cols=93 Identities=55% Similarity=0.975 Sum_probs=81.5
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccCCC---------Ccc
Q 016719 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPD---------RWE 118 (384)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~---------~~e 118 (384)
+||.|||+||+||+++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred ccCCCcCcCcccchhhhccccc
Q 016719 119 FANEGFLGGQKHLLKTIKRRRH 140 (384)
Q Consensus 119 F~h~~F~Rg~~~LL~~IkRk~~ 140 (384)
|+||+|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=2.5e-33 Score=271.49 Aligned_cols=140 Identities=36% Similarity=0.684 Sum_probs=112.7
Q ss_pred CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC-C---------
Q 016719 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD-P--------- 114 (384)
Q Consensus 45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-~--------- 114 (384)
.++.|+.|||.||++|++.++|+|+|+|+||||+|++.|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~ 88 (282)
T COG5169 9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE 88 (282)
T ss_pred chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence 357899999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred CCccccCCCcCcCcccchhhhcccccCCccccccC-Cccc---ccccc-----CCchHHHHHHHHHHHHHHHHHHHHHH
Q 016719 115 DRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRG-GEAC---LEVGQ-----YGLDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 115 ~~~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~-~~~~---~e~~~-----~~l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
..|+|.|++|++|..++|++|+|++.++....-.. ...+ .++.. ..+..++.+|....+.++..+..|+.
T Consensus 89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~ 167 (282)
T COG5169 89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKE 167 (282)
T ss_pred hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccc
Confidence 25999999999999999999999887765421111 1111 12222 24556666777777777666666654
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.87 E-value=0.0048 Score=50.57 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=44.9
Q ss_pred HHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhc-cCCcCCCChhhHHhhhcccc
Q 016719 52 KTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLL-PKYFKHSNFSSFIRQLNTYG 108 (384)
Q Consensus 52 KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vL-p~~Fkh~nfsSFvRQLN~YG 108 (384)
=|.++|.|+++.++|+|.. .+.-|.|.||+++++.=- -+.-...+|.++-|-|..|.
T Consensus 7 FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 7 FLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 3678899999999999999 999999999999986311 12234568899999998774
No 6
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=94.57 E-value=0.086 Score=45.89 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHhhHHhhhccc-CcccCccccC
Q 016719 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELG-GVQTGRKRRL 248 (384)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~~~~~~k~~~-~~~~~rkR~L 248 (384)
+.++.||..|++.+..+...+.+|.+++...++.+++|..+-|+++++ |...+.+-+-++++- ++..++++++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~i 75 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQI 75 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT-------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCc
Confidence 457889999999999999999999999999999999999999999997 777777665455554 4444444444
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.91 E-value=0.081 Score=43.62 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=43.1
Q ss_pred HHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhc-cCCcCCCChhhHHhhhcccc
Q 016719 53 TYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLL-PKYFKHSNFSSFIRQLNTYG 108 (384)
Q Consensus 53 L~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vL-p~~Fkh~nfsSFvRQLN~YG 108 (384)
|.++|.||++.++|+|.. ++.-|.+.|+++.++.-= -+-=...||..+-|-|..|-
T Consensus 8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 678999999999999998 688999999988776311 12223567888888887774
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=89.42 E-value=0.41 Score=44.33 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccc
Q 016719 50 LTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY 107 (384)
Q Consensus 50 l~KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y 107 (384)
..=|-++|+|++..++|+|.. +|--|.+.||++-++.-=- +-=...||.-.-|-|..|
T Consensus 72 wqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 72 WQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred HHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 334556789999999999998 6879999999999874211 211245666666666655
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.38 E-value=4.8 Score=32.02 Aligned_cols=46 Identities=33% Similarity=0.338 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
|..+++.||..+..|..+...|+++.+..+.+-.+..+|++++-.+
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666555555555555554433
No 10
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.97 E-value=9.4 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (384)
+.-||+.||..++.|..|+..+++.......+...+.+...+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888887777666655555554444443
No 11
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.34 E-value=6.5 Score=31.92 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVR-------LRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~-------LrQqqq~~~~ql~~meeRl~~ 202 (384)
|.-||+.||.++..|..|+.. |+++.+.++.+..+-++|+++
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888777 444444444444444444443
No 12
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.53 E-value=7.2 Score=28.28 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
++.+.+.||+....|..+-..|.++.+....++..+...++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667778888888888888888887777777777766553
No 13
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=78.43 E-value=9.9 Score=35.92 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=34.7
Q ss_pred cCCCcCcCcccchhhhcccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (384)
Q Consensus 120 ~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~~~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeR 199 (384)
.||.|...+++||..|+=..+. .+ .+ ......+..||++.+.++.++..|-+.
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~--------~~-av------------------SL~erQ~~~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPS--------GG-AV------------------SLVERQLERLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp ---------------------------------HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCC--------CC-cc------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988743221 11 11 112234566677777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 016719 200 LLSTEKKQQQMMTFLAKALKNP 221 (384)
Q Consensus 200 l~~~E~kqqqm~~FLak~~qnp 221 (384)
-+..+..++++..+..+++.=.
T Consensus 70 Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 70 ARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888887743
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=76.39 E-value=32 Score=26.97 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLa 215 (384)
...+++|=.-.+.|..|...|++++.....+-..+.+++.....+...|+.=|.
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555555555555665555555555666666666666666665444
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.86 E-value=24 Score=33.94 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
+..++..|+++.+.|...+.++..+....+.++..+++++..++...++|.-++.+++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555666666777777777777777666665554
No 16
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=74.89 E-value=18 Score=38.40 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLS-AMEDRLLSTEKKQQQMMTFLA 215 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~-~meeRl~~~E~kqqqm~~FLa 215 (384)
.+..++..|.+++..|..|..+||+...++..+++ +++..-+.+.+.++++..-+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45677777888888888888888887777766665 343333344445555544444
No 17
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.40 E-value=12 Score=29.32 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
.+...|+.+...+..|-..|.++......++.+|-.|+..+|+
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3334444444444555555556666777888888888888875
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.01 E-value=27 Score=32.06 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
...++.++..|..|+..|+++...+..++..+..++..++..=+.|+..+-++-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777778888888888888888888888888777777777777766654
No 19
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=70.89 E-value=51 Score=26.83 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=39.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 164 ELERLKR-DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 164 eie~LKr-d~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
+++++.+ .++.|..++..|+.....+..++...++.+..++...+-+..++..++
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 478889999999998888888888888888888777766655544443
No 20
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.83 E-value=30 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
|+.|| +-++.|..||.+.+..+..+..+|+..+.|.+.++.....+-
T Consensus 6 L~~Ei----rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 6 LEAEI----RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 567888899999888888888888888888887776666554
No 21
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.54 E-value=31 Score=30.08 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=29.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQ---QSRDQLSAMEDRLLSTEKKQQQMMT 212 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq---~~~~ql~~meeRl~~~E~kqqqm~~ 212 (384)
.+..++.+|...+..+..||++|-.... ....++..++..+..++.+.+-++.
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655442 2234455556666655555554443
No 22
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.07 E-value=35 Score=30.63 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~ 217 (384)
.+..++..+-...+.|..|+..++.....+...++.+.+|+..++..+.-+.++|..+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3566666666777777777777777777777778888888888777776666555544
No 23
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.58 E-value=34 Score=27.19 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLa 215 (384)
|..|.+.|.+....+..-|.+||.+......++..+..++...+.....+-.+|.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666777777777777777777777777777777766666655543
No 24
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.55 E-value=87 Score=30.08 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHhhHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~~~~ 232 (384)
+..+-..|..+...|..|+..|+.++......+...+.++..+++++.++-.....+.- ++.+++..-+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~L~ 115 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45556666666666677777776666677777777777777777777776665555542 5555555443
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.47 E-value=47 Score=37.28 Aligned_cols=60 Identities=17% Similarity=0.382 Sum_probs=46.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
.+...+..|+...+.-..++..+++....+......+.+|+..+..+|..++.=+.++++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777777888888888888777788888999999999888876666554
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.39 E-value=92 Score=24.74 Aligned_cols=47 Identities=6% Similarity=0.179 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqq 209 (384)
..|.++=.....|..|+..|+.+......+...+++....+.+.+..
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555444444444444444444333333
No 27
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.86 E-value=78 Score=24.09 Aligned_cols=33 Identities=9% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 168 LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
|..+...|...+..+|.+++.+...+..+++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556655555555554444444
No 28
>PF14282 FlxA: FlxA-like protein
Probab=54.41 E-value=82 Score=26.59 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQH-Q---QQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQq-q---q~~~~ql~~meeRl~~~E~ 205 (384)
.+..|+.|++....|..+|..|... - ..-..+++.+..+|..++.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~Lqa 65 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQA 65 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999762 1 2223344444444444443
No 29
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.59 E-value=70 Score=32.17 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqq 209 (384)
.+..++..|+.+...|.+|+..|.++......++..++.....+.....+
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~ 96 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE 96 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888887777766554443
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.24 E-value=37 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~q 192 (384)
|....+.|+.++..|..|...|+.+.......
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666665555544443
No 31
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.03 E-value=53 Score=27.80 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 197 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~me 197 (384)
.+..++++...+.+|+.++++++..++.++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556666666666555555444444433
No 32
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=49.33 E-value=13 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=16.4
Q ss_pred HhcCCCCCCeEEEcCCCCeEEEe
Q 016719 56 MVEDLSTDAIVSWSRTRNSFIVW 78 (384)
Q Consensus 56 ml~d~~~~~iIsWs~~G~sFiI~ 78 (384)
+++.+..+....|+|||+.|+..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666777778999999998654
No 33
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=48.72 E-value=1.3e+02 Score=28.53 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ------------------LSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~q------------------l~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
+..+.+.|...+..|..|+..|+++||.+.++ ++.|+..-+.-++.++++.--.+..+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~L 111 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELL 111 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888887777666543 33344444444555566554444444
No 34
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=48.12 E-value=1.4e+02 Score=24.20 Aligned_cols=47 Identities=11% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQ-------LSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~q-------l~~meeRl~~~E~kqqqm 210 (384)
-++.+|.+...+..|+..++.+......+ |+.+.+.+-.+|..+.+|
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888887777765555433 334455555555554444
No 35
>PRK10963 hypothetical protein; Provisional
Probab=47.26 E-value=81 Score=29.95 Aligned_cols=72 Identities=13% Similarity=0.263 Sum_probs=40.5
Q ss_pred cCCCcCcCcccchhhhcccccCCccccccCCccccccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGL-DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (384)
Q Consensus 120 ~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~~~~~e~~~~~l-~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~mee 198 (384)
.||.|--.+++||..++=.-+. .| . .+| +-+ +..||++...++.++..|-+
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~--------~g-a-----VSL~ErQ--------------~~~LR~r~~~Le~~l~~Li~ 65 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPV--------RG-T-----VSLVEWQ--------------MARQRNHIHVLEEEMTLLME 65 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCC--------CC-e-----ecHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999977643221 11 1 122 222 34445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016719 199 RLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 199 Rl~~~E~kqqqm~~FLak~~q 219 (384)
.-+..+...+++.....+++.
T Consensus 66 ~A~~Ne~l~~~~~~l~l~Ll~ 86 (223)
T PRK10963 66 QAIANEDLFYRLLPLQSRLAA 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555555554
No 36
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=47.22 E-value=86 Score=30.76 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL-----STEKKQQQMMT 212 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~-----~~E~kqqqm~~ 212 (384)
.|+.+|..|-.+++.|..|-..||.+...+.++...+..++. -++.+|+++++
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 467888888888888888888888877766655554444443 34445555543
No 37
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.37 E-value=98 Score=26.43 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 016719 190 RDQLSAMEDRLLST 203 (384)
Q Consensus 190 ~~ql~~meeRl~~~ 203 (384)
+.+...+.+|+...
T Consensus 42 ~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 42 RIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 38
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=45.75 E-value=74 Score=28.34 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 166 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 166 e~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
+.|..++..|++||.+|++++ ..|..++.....+..++..|-
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~-------s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEEN-------SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 345566666666666666554 455555555566666777664
No 39
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.59 E-value=1.1e+02 Score=25.16 Aligned_cols=50 Identities=28% Similarity=0.506 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQ----------HQQQSRDQLSAMEDRLLSTEKKQQQ 209 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQ----------qqq~~~~ql~~meeRl~~~E~kqqq 209 (384)
.+..+++.|+.+++.+..+|..+.. +-..+..++..++..+...+.+.+.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888777754 2333444445555555444444333
No 40
>PRK09039 hypothetical protein; Validated
Probab=45.46 E-value=1.2e+02 Score=30.76 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 169 KRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 169 Krd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
..+...|.+||..||.|+..+...|...+.+.+..+.+...+-.-|..++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444545445555555555555444444444444444443
No 41
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.07 E-value=1.3e+02 Score=22.93 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
..++..|..+...|..++..+|...+..+.+-.+-.+||.
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444444444444543
No 42
>PRK09039 hypothetical protein; Validated
Probab=44.85 E-value=1.4e+02 Score=30.43 Aligned_cols=47 Identities=30% Similarity=0.345 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
..++..+|........+|..|++|...++.|+.+++..|...|.+-.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666666666666666666666665555443
No 43
>PHA01819 hypothetical protein
Probab=43.72 E-value=32 Score=29.21 Aligned_cols=30 Identities=40% Similarity=0.595 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Q 016719 195 AMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQL 227 (384)
Q Consensus 195 ~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql 227 (384)
.+++|+..++ |||..||..-+|.|+-++|.
T Consensus 74 vleqri~sle---qq~ttflssq~qqpqqvqqt 103 (129)
T PHA01819 74 VLEQRIASLE---QQVTTFLSSQMQQPQQVQQT 103 (129)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhCchhhhhc
Confidence 4677887777 68999999999988766543
No 44
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.42 E-value=1.6e+02 Score=22.96 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLa 215 (384)
...+.+++.+...+...+..|.+.......++.++.+++..++..+.=+..++.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ii 58 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTII 58 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777777776666667777777777777666655544443
No 45
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.32 E-value=1.2e+02 Score=23.14 Aligned_cols=41 Identities=10% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
.|..++-++.-...+.+.+++.+.+.+..+++..+.+|..-
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666655443
No 46
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=43.26 E-value=2.7e+02 Score=25.66 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016719 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (384)
Q Consensus 168 LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~ 228 (384)
|-.-...|...|..| ++++....+|..++..+.....+...++.-|..+-+ -|..++
T Consensus 7 L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~ 63 (188)
T PF10018_consen 7 LIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 434444555555555 445566888888888888888888888888777765 566666
No 47
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.90 E-value=1.7e+02 Score=23.50 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 170 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 170 rd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
.....|..||..|+.+.....++.+...+....+++..+|+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777887777776666666665555555555554444
No 48
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.73 E-value=1.3e+02 Score=25.33 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRL--RQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~L--rQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
..+....+....+..++..| ++....++..|..|+.+++.++.+.+.|
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344466666666667766 6666666666777777766666665555
No 49
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.66 E-value=1.4e+02 Score=32.81 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp 221 (384)
+...+..|++.+..-.++|..++++....+..-..+++|+....-+|.-++.-+.++++-|
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 3444555555555556666666666666666666677777777777776666666666543
No 50
>PRK11637 AmiB activator; Provisional
Probab=42.37 E-value=1.5e+02 Score=30.80 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 176 MAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 176 ~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
..+|..+.++...+..++..++.++.
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444443
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.09 E-value=1.4e+02 Score=32.47 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh--cCchHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQ-------QQSRDQLSAMEDRLLSTEKK----QQQMMTFLAKAL--KNPSFFQQ 226 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqq-------q~~~~ql~~meeRl~~~E~k----qqqm~~FLak~~--qnp~fi~q 226 (384)
.++.++..||+++.-|..+|..+|.+. ....++++.|.++|..+.+. +.+...+.++-. .++.|+.+
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 356666777777777777777776543 23456666777777766633 333444444444 44455544
Q ss_pred HHh
Q 016719 227 LAQ 229 (384)
Q Consensus 227 l~~ 229 (384)
=++
T Consensus 246 eL~ 248 (546)
T KOG0977|consen 246 ELA 248 (546)
T ss_pred HHH
Confidence 433
No 52
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.89 E-value=2e+02 Score=28.11 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 176 MAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTF 213 (384)
Q Consensus 176 ~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~F 213 (384)
...|..|+++...++-++..+..+++.+.++|..+..=
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444445444433
No 53
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=41.75 E-value=98 Score=25.40 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 159 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (384)
Q Consensus 159 ~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (384)
+++...++.|.+++..|+.+|..+.....=...+|+.+.+|++.+
T Consensus 3 ~~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 3 YNMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999999999887776777787777776644
No 54
>PRK14127 cell division protein GpsB; Provisional
Probab=41.08 E-value=82 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
++.+-.+.+.|..|+..|+.+...++.++..++.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666778888888888888777777766666666654
No 55
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.92 E-value=2e+02 Score=26.00 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
.+..+++.+.+....+..++..++...+.....++..++++...+.....+..-+....
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888777777777777777777777777777766655554
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=40.62 E-value=69 Score=24.21 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (384)
|+.++..|...+..|..++..|+++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 57
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=40.54 E-value=1.7e+02 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 171 DRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (384)
Q Consensus 171 d~~~L~~El~~LrQqqq~~~~ql~~mee 198 (384)
|+..+...+++|||++.+...-+.+|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556778899999999888887777765
No 58
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.21 E-value=1.4e+02 Score=26.65 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016719 177 AEIVRLRQHQQQSRDQL 193 (384)
Q Consensus 177 ~El~~LrQqqq~~~~ql 193 (384)
.||++|+|.-.+++|+=
T Consensus 47 eEVvrlKQrRRTLKNRG 63 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRG 63 (135)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 35556665555555443
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.92 E-value=1.1e+02 Score=29.93 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kq 207 (384)
..++++++++...+..++..++.+......+++.+++|+...+.++
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666555444
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.57 E-value=1.9e+02 Score=28.95 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
.++..+|.+...+..+|...|+.....+.++..++..+.....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.56 E-value=2.1e+02 Score=28.88 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
.++.++|.+...+..++...+++....+.++..++.++.....+.+++.
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555544444433333
No 62
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=38.37 E-value=1.9e+02 Score=22.48 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016719 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (384)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~ 228 (384)
.+...+.+++..+.+....+..+|.+....+.....+-.-|.++-.|..++..++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~i 57 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777788888888888777777777777777766665554
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.17 E-value=2.8e+02 Score=24.35 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
..++++|+.+...|...+..+.++.........+++..++..+..
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333
No 64
>PRK11637 AmiB activator; Provisional
Probab=38.07 E-value=1.7e+02 Score=30.23 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
.++..+.++...+..+|..++++...+..++..++.++..++.+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555555555544444
No 65
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.02 E-value=1.7e+02 Score=31.39 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 169 KRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 169 Krd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
+.....|.++|..||++.+.+..+.+.++++|+.++..+++|-.=+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777777777777777777777666665444
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.91 E-value=1e+02 Score=29.30 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=15.7
Q ss_pred ccccccC--CCCccccCCCcCcCcccchh
Q 016719 107 YGFRKVD--PDRWEFANEGFLGGQKHLLK 133 (384)
Q Consensus 107 YGF~Kv~--~~~~eF~h~~F~Rg~~~LL~ 133 (384)
.||.+|. .++--|-|..|....|..-.
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~ 93 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRT 93 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHH
Confidence 3677774 33445667767666666433
No 67
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=37.77 E-value=2.7e+02 Score=24.04 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
+|...++..|..+..|..+-..|+..++.+..+......|+..++.+...+..-|
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888877777777777777777777777777777666555554433
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.50 E-value=2.1e+02 Score=27.97 Aligned_cols=48 Identities=31% Similarity=0.398 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
...++..+++..+.|..++..|+.+...+..++..++.++...-...+
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~ 261 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ 261 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777666666666666666554443333
No 69
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.75 E-value=87 Score=30.13 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=46.6
Q ss_pred ccccCCCcCcCcccchhhhcccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 117 WEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (384)
Q Consensus 117 ~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~~~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (384)
|-+.||.|-+-+++|+..|.=..+.... .+.+ +-+ +.++|+.+..++.++.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t------VSLv-------e~q--------------l~r~R~~~~~Le~~l~~L 64 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT------VSLV-------ERQ--------------LARLRNRIRELEEELAAL 64 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe------eehH-------HHH--------------HHHHHHHHHHHHHHHHHH
Confidence 4568999999999999988765433111 1111 223 445555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016719 197 EDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 197 eeRl~~~E~kqqqm~~FLak~~q 219 (384)
.+.-+..+.-+.+++..-..+++
T Consensus 65 ~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 65 MENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666666666666555554
No 70
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.69 E-value=1.1e+02 Score=30.36 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQQ 187 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq 187 (384)
.+.+|+.+++.|.+|+..|+++++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666644443
No 71
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.54 E-value=3e+02 Score=24.10 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
+...+.++..|...|...+.+|+.+....+.++...+.+.+.+..+..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444444444444444444444333
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.52 E-value=1.4e+02 Score=29.16 Aligned_cols=53 Identities=11% Similarity=0.292 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 212 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~ 212 (384)
..+..+.+|.+..+.--+-+..|.+|...++.++..|+.+++.+....++|..
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566666655555555555566666666666666666666666655555553
No 73
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.43 E-value=1.9e+02 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQH 185 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQq 185 (384)
..++..|+.+...|..++..++.+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.34 E-value=1.7e+02 Score=26.23 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL--SAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql--~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
|+.++..|+.+...|..++..|+.+...+...+ ..|...+..++....+|-.=|..+-
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554444332 2344444444555555544444433
No 75
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.21 E-value=1.9e+02 Score=29.83 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=19.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 158 QYGLDGELERLKRDRNVLMAEIVRLRQH 185 (384)
Q Consensus 158 ~~~l~~eie~LKrd~~~L~~El~~LrQq 185 (384)
.++|..|-++||++++.|..|+.+|+.+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777443
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.07 E-value=2.6e+02 Score=27.36 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
.|..++..+++....|..||..|...+.....++..+.+++..++..
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777666777776666666666543
No 77
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.68 E-value=1.8e+02 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=7.3
Q ss_pred cCchHHHHHHh
Q 016719 219 KNPSFFQQLAQ 229 (384)
Q Consensus 219 qnp~fi~ql~~ 229 (384)
.+|.++..++.
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 57777776653
No 78
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=34.53 E-value=1.3e+02 Score=30.90 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA--MEDRLLSTEKKQQQMMTFLAK 216 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~--meeRl~~~E~kqqqm~~FLak 216 (384)
..|.-.|+.++..|.+|+..|+.+...+++++.. +.++...++-.-..+...+-+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3677789999999999999999998888887764 666666665544444444333
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.21 E-value=2.4e+02 Score=26.02 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016719 190 RDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 190 ~~ql~~meeRl~~~E~kqqqm~ 211 (384)
..++..++++++.++.....++
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444443
No 80
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=33.40 E-value=2.5e+02 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQ 184 (384)
-.||..||..++.|+.|...||.
T Consensus 54 l~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888764
No 81
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.17 E-value=1.3e+02 Score=22.95 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (384)
+.+++.+.+.|..++..++++......++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555444444444
No 82
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.38 E-value=2.2e+02 Score=26.74 Aligned_cols=69 Identities=10% Similarity=0.212 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~ 228 (384)
+++..+++|......+...+-.-..+.-.....+..|++|+..++.+-.+|+..|..--+-.+-+...+
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~ 151 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETI 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 466677766443333332222111133356788899999999999999999988875443333343333
No 83
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.10 E-value=1.7e+02 Score=26.27 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQ--QQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqq--q~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
.+..++..|+.+...|..|+..|.... ..+...+..++..+..++.+...+-
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777765532 3334444444444444444444443
No 84
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.53 E-value=1.9e+02 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016719 164 ELERLKRDRNVLMAEIVRLRQH 185 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQq 185 (384)
.+.+|......|..++..|+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~ 30 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQ 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.43 E-value=2.6e+02 Score=29.59 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
|..+|..++.+...+..++............++..++.++..++
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 44445555555555544444444444444444444554444443
No 86
>PHA02047 phage lambda Rz1-like protein
Probab=31.08 E-value=2.5e+02 Score=23.82 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 176 MAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 176 ~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
..+..+|.++....+.++.+..+++..++++..+--.-+..+++
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666665555545555554
No 87
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=31.04 E-value=45 Score=35.73 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
+..+++.++ +.+.|.+||..|++|+. .|.+|+..+|+
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 445555554 55556666666655544 55566655553
No 88
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.02 E-value=2.6e+02 Score=24.45 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
...|-+.+-.+..++..+|.+.......+..++.++...+++++.+
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555666665555555444
No 89
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.92 E-value=2.7e+02 Score=24.80 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 016719 174 VLMAEIVRLR 183 (384)
Q Consensus 174 ~L~~El~~Lr 183 (384)
.|..|+.+..
T Consensus 45 lLq~e~~~~e 54 (160)
T PF13094_consen 45 LLQEEIEKEE 54 (160)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 90
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.69 E-value=3e+02 Score=29.54 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
+-.++..++++.+.|..+...|+.++..++.+...+..|++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45666677777777777777776666666555555555554
No 91
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.64 E-value=1.9e+02 Score=30.28 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK-ALKNPSFFQQLA 228 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq---qq~~~~ql~~meeRl~~~E~kqqqm~~FLak-~~qnp~fi~ql~ 228 (384)
.+..+++.|+.+++.+..++..+++. ......+...+.+++..++.+...+-.-+.. ++.=|.++.--+
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 46677888888888888888764332 2234455555666666666555555433332 233444444444
No 92
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.48 E-value=2.6e+02 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=11.5
Q ss_pred hHHhhhccccccccC
Q 016719 99 SFIRQLNTYGFRKVD 113 (384)
Q Consensus 99 SFvRQLN~YGF~Kv~ 113 (384)
.|+++|..-||..-.
T Consensus 6 ~~v~~Le~~Gft~~Q 20 (177)
T PF07798_consen 6 KFVKRLEAAGFTEEQ 20 (177)
T ss_pred HHHHHHHHCCCCHHH
Confidence 588888888887643
No 93
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.36 E-value=2.7e+02 Score=30.92 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
+..|.+||.+||.+...+..+|..++..+...|...++|
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444444544444444444444444
No 94
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.33 E-value=26 Score=32.27 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 170 RDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 170 rd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (384)
.+++.|..|+++||.+..+++.++ .+.+++..
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 455666666666666666666666 55555543
No 95
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=30.11 E-value=2.2e+02 Score=20.76 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 181 RLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 181 ~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
.|-+|.......+...++.++.+... -.++.+|.++.
T Consensus 6 ~L~~qL~qL~aNL~~t~~~l~~~s~Q-~~~i~~LG~~~ 42 (45)
T PF08227_consen 6 HLASQLAQLQANLADTENLLEMTSIQ-ANSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 34444444445555666666655543 37777777654
No 96
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.98 E-value=3.7e+02 Score=23.38 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
|...|.++.-+...|..++.+|.++......++..+..+......
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777776666655543
No 97
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.55 E-value=3.5e+02 Score=23.75 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
.++..++.....+...+..|+.....+..++..+..|+..+.++
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR 87 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHR 87 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777555555555565555555544433
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.49 E-value=2.2e+02 Score=31.04 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (384)
..+++...+++..|..+...|+++...++.++..|+..+..
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554444444444444444433
No 99
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=29.13 E-value=1.7e+02 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeR 199 (384)
+.|-+.|+++..-+..||..|||-...-+.+...+..+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45556677776666777777766554444444444433
No 100
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=28.98 E-value=5.3e+02 Score=28.21 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=57.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Q 016719 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA------------MEDRLLSTEKKQQQMMTFLAKALKNPSFFQ 225 (384)
Q Consensus 158 ~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~------------meeRl~~~E~kqqqm~~FLak~~qnp~fi~ 225 (384)
.|-...|+.+|-.+.....+-...||-|.....|+|.. ..+=++.....||+...||...+++|..-.
T Consensus 313 tFRdktei~~L~eqLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~~yd~a~~~I~~~~~~qq~~~~~l~~~i~~~~lAg 392 (537)
T COG3290 313 TFRDKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDALDYIQQESEEQQELIDSLSEKIKDPVLAG 392 (537)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhHHHHHHhcccHHHHH
Confidence 34556788888777777777788888888888777654 344455666779999999999999985444
Q ss_pred HHHhhHHhhhccc
Q 016719 226 QLAQSNAHRRELG 238 (384)
Q Consensus 226 ql~~~~~~~k~~~ 238 (384)
=|+-+..+-|+++
T Consensus 393 ~LlgK~~rArElg 405 (537)
T COG3290 393 FLLGKISRARELG 405 (537)
T ss_pred HHHhHHHHHHHcC
Confidence 4444444446665
No 101
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.91 E-value=1.9e+02 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=13.8
Q ss_pred cCCCcCcCcccchhhhcccccCC
Q 016719 120 ANEGFLGGQKHLLKTIKRRRHVS 142 (384)
Q Consensus 120 ~h~~F~Rg~~~LL~~IkRk~~~s 142 (384)
.|-.|.......|..|++-+...
T Consensus 34 G~R~y~~~dl~~L~~I~~l~~~G 56 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQIEEG 56 (175)
T ss_pred CCEEECHHHHHHHHHHHHHHHcC
Confidence 34445555566777777765543
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.84 E-value=2.9e+02 Score=31.11 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQH 185 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq 185 (384)
.|+.++.+||.|.+...+.=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 46777777777766655555555555
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.82 E-value=4e+02 Score=25.72 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
-|..++++.+.|..|=..+-.+++.+...+..||.-++..+....++..-..+.+.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777776777777777777777777777777777666666664
No 104
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=27.76 E-value=1.5e+02 Score=24.89 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchHHHHHHhhHH
Q 016719 177 AEIVRLRQHQQQSRDQLSAMEDRLLSTE-KKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (384)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl~~~E-~kqqqm~~FLak~~qnp~fi~ql~~~~~ 232 (384)
.|+.+|++-......+|..+.+++...- .....|+..-..++++|.|+......-.
T Consensus 35 ~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 35 AEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 4555555555555556665555543221 2334788888889999999988866554
No 105
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.57 E-value=3.7e+02 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQS 189 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~ 189 (384)
..+..|..+...|..+|..|+++...+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444333
No 106
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.25 E-value=1.4e+02 Score=27.74 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016719 190 RDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 190 ~~ql~~meeRl~~~E~k 206 (384)
+.+|..|-.+|+.+|++
T Consensus 124 r~e~ee~~~~l~~le~~ 140 (175)
T PRK13182 124 RREMEEMLERLQKLEAR 140 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555543
No 107
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.01 E-value=3.3e+02 Score=26.75 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~ 218 (384)
.-+...++.+|.+.++...-.+-|+.+..++.++..|+.....+..+..+|..-|.++-
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999998888888888888888888888887777777766555443
No 108
>PLN02320 seryl-tRNA synthetase
Probab=26.50 E-value=2.5e+02 Score=30.40 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVR---------LRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~---------LrQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
.+..+++.|+.+++.+..++.. |+.+-..+..++.++++.+..++.+..+++
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888887777754 222233344444455555544444444333
No 109
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.47 E-value=2.8e+02 Score=27.98 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
.-..+..+.|++++.+-+ .+.||.+ +.+..++...+++++.+.+++
T Consensus 222 ~~~~~~~~rkr~qnk~AA--tRYRqKk---Rae~E~l~ge~~~Le~rN~~L 267 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAA--TRYRQKK---RAEKEALLGELEGLEKRNEEL 267 (294)
T ss_pred CCchHHHHHHHHHhHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766632 3444443 233333444444444444443
No 110
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.47 E-value=3e+02 Score=28.79 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQH----QQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK-ALKNPSFFQQLA 228 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq----qq~~~~ql~~meeRl~~~E~kqqqm~~FLak-~~qnp~fi~ql~ 228 (384)
.+..+++.|+.+++.+..+|..+++. ...+..++..+.+++..++.+...+-.-+.. ++.=|.++.--+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 46778888999999998888775432 2344455566666666666655555433332 233444444444
No 111
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.00 E-value=3.3e+02 Score=27.01 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
...+..++..+++....++.++..++++|
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444
No 112
>PRK15396 murein lipoprotein; Provisional
Probab=25.85 E-value=3.2e+02 Score=22.16 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
.++++|..+.+.|..++..+.+..+.++..+++-.+.-
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDA 62 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666655555444433
No 113
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.81 E-value=2.7e+02 Score=29.82 Aligned_cols=40 Identities=38% Similarity=0.476 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (384)
-|++.|+.+...+..|+..|+.|.+....+++.++.++.+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999998888888877777664
No 114
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.61 E-value=4.6e+02 Score=27.08 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=42.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQ---QSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (384)
Q Consensus 158 ~~~l~~eie~LKrd~~~L~~El~~LrQqqq---~~~~ql~~meeRl~~~E~kqqqm~~FLa 215 (384)
......-++.|+...+.|..++.+|..+.. ...+++..+++++...+++..++..+++
T Consensus 237 ~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 237 ELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888876532 4567788888888888887777665544
No 115
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.60 E-value=2.6e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (384)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqq 209 (384)
.+..|...|+.+......++..++..+..+++++..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444433
No 116
>PLN02678 seryl-tRNA synthetase
Probab=25.53 E-value=2.7e+02 Score=29.61 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRL 182 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~L 182 (384)
.+..+++.|+.+++.+..+|..+
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~ 66 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKL 66 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888754
No 117
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.16 E-value=4.6e+02 Score=22.82 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSR 190 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~ 190 (384)
+.++++.+|.+...+..++..|+++....+
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 118
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=25.05 E-value=2.2e+02 Score=21.76 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=6.5
Q ss_pred HHHHhcCchHHH
Q 016719 214 LAKALKNPSFFQ 225 (384)
Q Consensus 214 Lak~~qnp~fi~ 225 (384)
+.+.+.||+|+.
T Consensus 23 ~~~kL~n~~F~~ 34 (66)
T PF10458_consen 23 LEKKLSNENFVE 34 (66)
T ss_dssp HHHHHCSTTHHH
T ss_pred HHHHHcCccccc
Confidence 344455666654
No 119
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.84 E-value=4.1e+02 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 166 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (384)
Q Consensus 166 e~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (384)
++.+++...+..+|...+++.+.+..+|+.++..+..+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~ 78 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASL 78 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333333333333333333333
No 120
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=24.77 E-value=3.6e+02 Score=21.52 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 159 YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (384)
Q Consensus 159 ~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~ 195 (384)
.++.+=+..|+.+-.+++.|.-.||++...++.+|..
T Consensus 4 ~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 4 TSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777889999999999999999998888877754
No 121
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=2.7e+02 Score=24.37 Aligned_cols=39 Identities=13% Similarity=0.403 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
+.-++.|+.....|...|..|+.+......++..|...|
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777666655555555444444
No 122
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.65 E-value=4.5e+02 Score=22.59 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 016719 193 LSAMEDRLL 201 (384)
Q Consensus 193 l~~meeRl~ 201 (384)
...+.+|+.
T Consensus 45 N~~Lr~~l~ 53 (110)
T PRK13169 45 NDKLRERLE 53 (110)
T ss_pred HHHHHHHHH
Confidence 333444443
No 123
>PRK15396 murein lipoprotein; Provisional
Probab=24.60 E-value=3.8e+02 Score=21.70 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (384)
.|..+++.|+.+...|..++..+|..-+..+.+-.+-.+||..+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999888888888888888754
No 124
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.60 E-value=2e+02 Score=24.25 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=4.0
Q ss_pred chHHHHHH
Q 016719 221 PSFFQQLA 228 (384)
Q Consensus 221 p~fi~ql~ 228 (384)
+.++..++
T Consensus 64 ~dyiEe~A 71 (105)
T PRK00888 64 QEAIEERA 71 (105)
T ss_pred HHHHHHHH
Confidence 35555443
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.46 E-value=5.2e+02 Score=23.18 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHh
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQ 229 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~ 229 (384)
+...+..|.++......+...+.-+..+.+..+..|+..+..+-..-+++-.=|..+-....-+.+.++
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666555555555555555556666666655555555555555544443333333333
No 126
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.43 E-value=3.3e+02 Score=28.13 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
.|.++|+-.++.|..++.+.+.-...+.++.+.||+=++..+.+
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EE 142 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREE 142 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34455555556665555555544444444444444444443333
No 127
>smart00338 BRLZ basic region leucin zipper.
Probab=24.37 E-value=3.1e+02 Score=20.57 Aligned_cols=23 Identities=4% Similarity=0.261 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016719 176 MAEIVRLRQHQQQSRDQLSAMED 198 (384)
Q Consensus 176 ~~El~~LrQqqq~~~~ql~~mee 198 (384)
..++..|..+...+..++..|+.
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 128
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.10 E-value=2.9e+02 Score=22.82 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (384)
..+.-+..|......|..++.++..+...+..++..++.+++.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888888888888887777777644
No 129
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.07 E-value=4.1e+02 Score=22.34 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 177 AEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
.++..|+-....++.++..|+.+++++.+...
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444555666666666654433
No 130
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.90 E-value=4.2e+02 Score=21.90 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (384)
Q Consensus 175 L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (384)
|.+|+...+++.....+++..+++|...+
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555554444
No 131
>PHA01750 hypothetical protein
Probab=23.71 E-value=2.8e+02 Score=22.07 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 174 VLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
...+|+.+|+-+.+.+.....++++++
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv 65 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQV 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555555544444444444433
No 132
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.62 E-value=3.7e+02 Score=23.67 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.3
Q ss_pred HHHHHh
Q 016719 224 FQQLAQ 229 (384)
Q Consensus 224 i~ql~~ 229 (384)
+++.+.
T Consensus 108 v~~~V~ 113 (126)
T PF07889_consen 108 VQQMVE 113 (126)
T ss_pred HHHHHH
Confidence 333333
No 133
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.48 E-value=4.7e+02 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQ 184 (384)
..-+..|+..++.|..|+..|++
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555554444
No 134
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.39 E-value=2.5e+02 Score=26.65 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
+.|-+.|+.+..-+..||..|||-+-.-+.|...+.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666665544444444444443
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.24 E-value=3e+02 Score=29.87 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQ--------------------------------------QQSRDQLSAMEDRLL 201 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqq--------------------------------------q~~~~ql~~meeRl~ 201 (384)
.+..-+..+++.+..|..|+.++++.+ -.+...+..+.+++.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665532 122344555666677
Q ss_pred HHHHHHHHHHHHHHHHhcCchHHH
Q 016719 202 STEKKQQQMMTFLAKALKNPSFFQ 225 (384)
Q Consensus 202 ~~E~kqqqm~~FLak~~qnp~fi~ 225 (384)
.++..|..|..-|..+-.+-.-..
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar 413 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEAR 413 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766655443333
No 136
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=23.24 E-value=98 Score=22.81 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 016719 189 SRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (384)
Q Consensus 189 ~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp 221 (384)
++.++..+|+.++.+.+-..-+..|-++++-.|
T Consensus 16 l~vrv~eLEeEV~~LrKINrdLfdFSt~iiTkp 48 (48)
T PF14077_consen 16 LRVRVSELEEEVRTLRKINRDLFDFSTRIITKP 48 (48)
T ss_pred heeeHHHHHHHHHHHHHHhHHHHhhhhhhccCC
Confidence 344455566666666666677777777766543
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.23 E-value=4.1e+02 Score=29.92 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA-------MEDRLLSTEKKQQQMMTFLAKA 217 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~-------meeRl~~~E~kqqqm~~FLak~ 217 (384)
-...+.+|..|...|..||...||.=+.++.++.. +...|..+.+...+|..-+..+
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999888888887443 2223444444445554433333
No 138
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.92 E-value=3.4e+02 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
+..+-++.|..+..|..|+.+++++...++.++..++.-.-
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888877777777766655443
No 139
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.64 E-value=4.5e+02 Score=23.69 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 185 HQQQSRDQLSAMEDRLLSTEKKQQQMMTF 213 (384)
Q Consensus 185 qqq~~~~ql~~meeRl~~~E~kqqqm~~F 213 (384)
+......+++.+.+.+.....+...++..
T Consensus 74 k~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 74 KLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444333333333333333
No 140
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.55 E-value=3.6e+02 Score=23.29 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
.++.-++.|++....|...+..+.++......++..+...++.+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888877777777777666666655443
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.45 E-value=3.6e+02 Score=28.85 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
+++..|.....+.+|...|++.+.+++..-+.++++++....++...
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666667766666666666666665555444443
No 142
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.39 E-value=3.7e+02 Score=20.76 Aligned_cols=38 Identities=8% Similarity=0.261 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeR 199 (384)
..++.+.|..+..+...|.....+...+..+|..|+.+
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333333333
No 143
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.38 E-value=4e+02 Score=22.06 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
-.+.+++++++.|..|...|+.+......++.+-+-|-
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666665555555544433
No 144
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.23 E-value=5.2e+02 Score=28.83 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
+..+|++|+.+...|..+|..+..+...-+..+..+-+++....+++--+-+|=.++-.
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~ 142 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEE 142 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555555555555555555566666666666666666556555543
No 145
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.15 E-value=2.6e+02 Score=27.00 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqq 186 (384)
.+.+++.++..|.+|+..|+.++
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665555544
No 146
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=22.12 E-value=5.3e+02 Score=26.84 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (384)
.+..+..++..|.+.+...+..|....+.+++++..+-++++.
T Consensus 327 ~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe 369 (400)
T COG5613 327 ALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQE 369 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655555555555555555555555544443
No 147
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.98 E-value=5.1e+02 Score=24.01 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 178 El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
.+..+..+...+...+..|+.++..++.+...+
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444555555444444433
No 148
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.81 E-value=3.9e+02 Score=20.36 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (384)
++.|+.+|.++..-+..++.++....
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877776543
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.70 E-value=6.3e+02 Score=22.75 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
..++..++.+...+..+....+............+...++.+.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 108 ESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 150
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.63 E-value=3.1e+02 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 162 DGELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqq 186 (384)
+..++.|..++..|..|+..|+.+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 151
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.63 E-value=3.8e+02 Score=21.50 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
.+.-++.|+.+...+..++..|+.+...+..++..++..+.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888888888777777666666666665553
No 152
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.52 E-value=3.4e+02 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
..|...+.+|..++..+..+|..+++|+.
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444
No 153
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.32 E-value=2.7e+02 Score=27.74 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLS-AMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~-~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
-+..|...+++|..||..|.+.+..++.+|. ..-..-+.+-.+-+-...+|.-++|
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGsLQ 61 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGSLQ 61 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHHHH
Confidence 3566888889999999999888877777775 2333333334444455566665544
No 154
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=20.23 E-value=1.1e+02 Score=31.76 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=26.8
Q ss_pred chHHHHHHHhcCCCCC----CeEEEcCCCCeEEEeCCchhh
Q 016719 48 PFLTKTYEMVEDLSTD----AIVSWSRTRNSFIVWDSHQFS 84 (384)
Q Consensus 48 ~Fl~KL~~ml~d~~~~----~iIsWs~~G~sFiI~d~~~F~ 84 (384)
-|..|-|.++..-..+ .-|.|+|||+...|||.-.=.
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley 202 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY 202 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence 3556778888754443 238999999999999875433
No 155
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=20.17 E-value=2.4e+02 Score=27.50 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016719 193 LSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 193 l~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
...++.+++.++.+++.|..|++++-+
T Consensus 38 q~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 38 QQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666667777888888887754
No 156
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.13 E-value=5e+02 Score=23.06 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
.+.+|..|.+.+..|..+|..+..+.......+...+.+....+.-+..|
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
No 157
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.07 E-value=3.8e+02 Score=23.77 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=30.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeR 199 (384)
.++.-.+.|......|..+|..|+++...+..+|.++...
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~ 117 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKV 117 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888889999999888888877777665543
No 158
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=20.05 E-value=2.5e+02 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016719 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
.++.|++..+.+-..|...+-.|+.+....+.++..|.+.+.++.
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456667777777777777777777777777777777777766554
Done!