BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016720
         (384 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q07404|UREH_BACSB Urease accessory protein UreH OS=Bacillus sp. (strain TB-90)
           GN=ureH PE=3 SV=1
          Length = 228

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 155 RTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRM-ESAAVGALWGCGHDAGQVIF 213
           + +LLS    GF  G  H +  PDH+ A++ +     ++  S+  G  WG GH +  +IF
Sbjct: 3   QVDLLSILTLGFVLGIKHAME-PDHVIAVSTIVCQSKKLWRSSLAGVFWGIGHTSTLLIF 61

Query: 214 GLLFLLLKDRLHIEVIRTWGTR---VVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS 270
           G+  +L+K ++  E    W      +VG+ L+  G   I    +        E+    + 
Sbjct: 62  GMTIILMKKKISQE----WSMSLEFLVGIILVYFGISAILSLKKTH------EHSHSRLH 111

Query: 271 VYEALDNPAVGKKKIGFA-TFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGT 329
           ++   D+P    K I +  +   GI+HGL   A M++L    +     G  +++ F  GT
Sbjct: 112 LHT--DHPIYTYKGIPYVKSLFIGIIHGLAGSAAMVLLTMSTVEKAWEGLLYILFFGAGT 169

Query: 330 VVAMGSYTVFIG 341
           V+ M S+T  IG
Sbjct: 170 VLGMLSFTTLIG 181


>sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana
           GN=HEMC PE=1 SV=1
          Length = 382

 Score = 36.6 bits (83), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)

Query: 224 LHIEVIRTWGTRVVGMTLLVIGAMGI--KEASEVPTPCVALENGECDVSVYEALDNP 278
           +HIE+I+T G +++   L  IG  G+  KE  E      AL NG  D++V+   D P
Sbjct: 109 IHIEIIKTTGDKILSQPLADIGGKGLFTKEIDE------ALINGHIDIAVHSMKDVP 159


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,378,617
Number of Sequences: 539616
Number of extensions: 5359593
Number of successful extensions: 13135
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 13133
Number of HSP's gapped (non-prelim): 23
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)