Query 016720
Match_columns 384
No_of_seqs 148 out of 399
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10019 nickel/cobalt efflux 100.0 1.6E-26 3.4E-31 224.7 24.1 224 157-381 12-277 (279)
2 PF13386 DsbD_2: Cytochrome C 99.9 3.4E-21 7.4E-26 177.8 16.0 191 161-372 2-199 (199)
3 COG2836 Uncharacterized conser 99.9 1.1E-20 2.5E-25 177.6 19.4 211 155-377 3-218 (232)
4 TIGR00802 nico high-affinity n 99.8 7.7E-19 1.7E-23 169.5 10.4 209 163-376 2-242 (280)
5 COG2215 ABC-type uncharacteriz 99.7 4.7E-16 1E-20 151.8 23.6 221 158-380 54-299 (303)
6 PF03824 NicO: High-affinity n 99.6 1.9E-14 4E-19 139.7 20.8 186 158-345 1-241 (282)
7 COG3376 HoxN High-affinity nic 99.6 8.4E-16 1.8E-20 149.3 7.8 215 156-376 46-293 (342)
8 PRK00293 dipZ thiol:disulfide 99.4 1.6E-11 3.5E-16 130.5 18.7 205 157-376 168-381 (571)
9 PF02683 DsbD: Cytochrome C bi 99.2 1.1E-09 2.4E-14 102.1 18.9 193 166-374 2-210 (211)
10 COG0785 CcdA Cytochrome c biog 98.9 2E-07 4.4E-12 88.6 20.1 196 161-373 12-219 (220)
11 PF13795 HupE_UreJ_2: HupE / U 98.5 1.1E-06 2.5E-11 79.2 10.2 141 166-344 2-145 (151)
12 PF11139 DUF2910: Protein of u 98.1 0.00034 7.4E-09 65.6 18.9 188 173-377 9-212 (214)
13 PF01810 LysE: LysE type trans 97.7 0.0031 6.7E-08 57.3 17.1 160 196-376 23-190 (191)
14 COG4232 Thiol:disulfide interc 97.4 0.003 6.5E-08 67.6 13.8 197 162-373 170-379 (569)
15 PRK09304 arginine exporter pro 97.4 0.049 1.1E-06 50.8 20.5 190 161-378 4-203 (207)
16 PRK11469 hypothetical protein; 97.3 0.042 9.2E-07 51.2 19.6 156 191-380 32-188 (188)
17 COG1280 RhtB Putative threonin 96.9 0.4 8.6E-06 45.0 21.4 161 197-377 37-207 (208)
18 TIGR00949 2A76 The Resistance 96.8 0.17 3.7E-06 45.8 18.0 159 196-372 18-184 (185)
19 PRK10958 leucine export protei 96.8 0.5 1.1E-05 44.3 21.3 178 173-375 21-209 (212)
20 PRK10520 rhtB homoserine/homos 96.4 0.84 1.8E-05 42.2 20.5 159 197-377 37-204 (205)
21 PF02683 DsbD: Cytochrome C bi 96.2 0.029 6.3E-07 52.3 9.1 90 158-249 117-210 (211)
22 PRK10229 threonine efflux syst 96.1 1.1 2.5E-05 41.3 21.4 163 197-376 36-205 (206)
23 PF04955 HupE_UreJ: HupE / Ure 95.9 0.24 5.2E-06 46.0 13.8 156 165-372 21-179 (180)
24 PRK10323 cysteine/O-acetylseri 95.3 2.3 5E-05 39.3 21.0 118 228-374 70-194 (195)
25 PF09948 DUF2182: Predicted me 95.1 0.37 8.1E-06 45.3 12.0 148 194-373 34-190 (191)
26 COG1971 Predicted membrane pro 94.3 4.8 0.0001 38.0 19.1 180 158-377 3-187 (190)
27 TIGR02840 spore_YtaF putative 93.3 2.3 5.1E-05 40.1 13.4 36 218-254 48-84 (206)
28 PRK00293 dipZ thiol:disulfide 93.2 0.79 1.7E-05 49.5 11.4 88 157-251 288-381 (571)
29 COG2370 HupE Hydrogenase/ureas 92.8 3.2 6.9E-05 39.2 13.2 159 163-375 35-198 (201)
30 COG2119 Predicted membrane pro 92.8 3.6 7.7E-05 38.8 13.5 125 229-381 63-189 (190)
31 PF03824 NicO: High-affinity n 92.7 1.2 2.5E-05 43.5 10.7 91 288-379 7-102 (282)
32 PF03596 Cad: Cadmium resistan 92.6 0.65 1.4E-05 43.7 8.5 158 193-377 25-182 (191)
33 PF13386 DsbD_2: Cytochrome C 92.5 0.38 8.3E-06 44.5 6.8 81 162-247 118-199 (199)
34 TIGR00948 2a75 L-lysine export 91.7 9.7 0.00021 34.3 15.7 147 199-364 22-175 (177)
35 COG2215 ABC-type uncharacteriz 90.5 3.2 6.9E-05 41.7 11.2 30 351-380 126-155 (303)
36 PF09930 DUF2162: Predicted tr 89.7 16 0.00034 35.4 14.9 57 192-252 31-89 (224)
37 PRK10019 nickel/cobalt efflux 88.9 2.6 5.6E-05 41.9 9.2 85 167-253 182-274 (279)
38 PF01914 MarC: MarC family int 86.5 29 0.00063 32.7 15.6 28 353-380 174-201 (203)
39 COG0785 CcdA Cytochrome c biog 85.4 12 0.00025 35.9 11.3 89 158-248 126-219 (220)
40 COG4280 Predicted membrane pro 85.2 9.1 0.0002 36.7 10.1 83 160-253 4-86 (236)
41 PRK10621 hypothetical protein; 81.2 54 0.0012 31.6 16.1 25 355-379 232-256 (266)
42 COG1279 Lysine efflux permease 81.1 53 0.0011 31.4 14.6 130 227-376 66-201 (202)
43 COG5486 Predicted metal-bindin 80.3 9.9 0.00021 37.4 8.5 193 152-375 78-280 (283)
44 PRK10995 inner membrane protei 78.5 62 0.0014 30.7 19.5 36 345-380 179-215 (221)
45 COG2836 Uncharacterized conser 73.1 23 0.00051 34.4 8.9 85 162-252 132-218 (232)
46 COG4300 CadD Predicted permeas 73.1 5.7 0.00012 37.5 4.6 136 214-377 54-194 (205)
47 PF11139 DUF2910: Protein of u 66.5 47 0.001 31.0 9.4 97 155-251 108-211 (214)
48 TIGR00779 cad cadmium resistan 66.2 3 6.6E-05 39.4 1.3 129 229-376 53-181 (193)
49 PF02659 DUF204: Domain of unk 64.4 17 0.00037 27.8 5.0 48 193-245 20-67 (67)
50 COG3247 HdeD Uncharacterized c 62.0 1.4E+02 0.0031 28.1 14.7 24 355-378 130-153 (185)
51 PRK11469 hypothetical protein; 60.8 27 0.00058 32.6 6.5 58 193-251 117-184 (188)
52 PF01925 TauE: Sulfite exporte 60.6 1.4E+02 0.0031 27.6 13.0 23 230-252 89-111 (240)
53 COG4232 Thiol:disulfide interc 60.5 1.6E+02 0.0034 32.5 13.0 122 99-250 280-406 (569)
54 PF04474 DUF554: Protein of un 58.2 1E+02 0.0022 30.0 10.1 42 210-252 11-52 (226)
55 PF11364 DUF3165: Protein of u 55.7 53 0.0012 27.0 6.5 44 212-256 34-77 (81)
56 PF05977 MFS_3: Transmembrane 52.1 1.4E+02 0.003 32.1 11.0 65 159-223 104-169 (524)
57 PF01810 LysE: LysE type trans 50.1 84 0.0018 28.2 7.9 50 201-251 141-190 (191)
58 PF14007 YtpI: YtpI-like prote 49.5 24 0.00052 29.5 3.8 26 229-254 54-79 (89)
59 COG0730 Predicted permeases [G 49.2 2.4E+02 0.0052 26.8 15.8 24 355-378 232-255 (258)
60 COG4827 Predicted transporter 46.2 2.9E+02 0.0063 26.9 14.2 79 165-254 19-97 (239)
61 PRK02251 putative septation in 44.8 31 0.00067 28.8 3.7 41 208-249 39-83 (87)
62 PRK11111 hypothetical protein; 43.9 2.9E+02 0.0064 26.3 15.3 27 354-380 181-207 (214)
63 PF03209 PUCC: PUCC protein; 41.9 4.4E+02 0.0096 27.8 15.4 28 314-341 242-269 (403)
64 PRK05771 V-type ATP synthase s 39.9 1.2E+02 0.0026 33.3 8.5 66 314-383 347-418 (646)
65 TIGR00145 FTR1 family protein. 39.6 4E+02 0.0087 26.6 16.9 57 192-251 37-97 (283)
66 TIGR00704 NaPi_cotrn_rel Na/Pi 38.3 4.3E+02 0.0094 26.6 11.7 106 211-332 111-222 (307)
67 PF08507 COPI_assoc: COPI asso 35.7 90 0.0019 27.3 5.5 45 196-250 60-104 (136)
68 PF03239 FTR1: Iron permease F 35.4 4.6E+02 0.01 26.1 17.7 57 192-251 34-97 (306)
69 PF03729 DUF308: Short repeat 33.9 1.9E+02 0.0042 21.3 6.9 22 353-374 50-71 (72)
70 PRK00159 putative septation in 33.5 51 0.0011 27.5 3.3 41 208-249 38-83 (87)
71 PF01169 UPF0016: Uncharacteri 33.3 1.1E+02 0.0025 24.5 5.2 42 327-370 37-78 (78)
72 PLN02673 quinolinate synthetas 32.5 82 0.0018 35.4 5.6 90 8-105 6-97 (724)
73 PF06781 UPF0233: Uncharacteri 31.6 67 0.0015 26.7 3.7 41 208-249 38-83 (87)
74 PRK06814 acylglycerophosphoeth 31.5 5.9E+02 0.013 29.3 12.6 63 157-219 107-170 (1140)
75 PF03741 TerC: Integral membra 29.8 4.6E+02 0.0099 24.3 16.2 23 230-252 59-81 (183)
76 PF09323 DUF1980: Domain of un 29.8 2E+02 0.0044 26.3 7.0 26 231-256 32-57 (182)
77 PF04123 DUF373: Domain of unk 29.4 6.5E+02 0.014 26.0 13.1 27 228-254 177-203 (344)
78 TIGR00900 2A0121 H+ Antiporter 29.4 4.8E+02 0.01 24.4 13.0 16 319-334 250-265 (365)
79 COG1971 Predicted membrane pro 27.0 4.4E+02 0.0096 25.0 8.8 55 317-378 35-89 (190)
80 PF07857 DUF1632: CEO family ( 23.4 6.1E+02 0.013 25.0 9.4 52 288-339 187-240 (254)
81 PRK09304 arginine exporter pro 23.4 5.9E+02 0.013 23.5 9.6 52 324-375 38-89 (207)
82 PHA02680 ORF090 IMV phosphoryl 23.2 1.4E+02 0.0031 25.0 4.2 29 355-384 41-69 (91)
83 PF04955 HupE_UreJ: HupE / Ure 22.8 6.2E+02 0.013 23.5 10.4 44 202-247 135-179 (180)
84 COG1108 ZnuB ABC-type Mn2+/Zn2 22.0 6.3E+02 0.014 25.1 9.2 89 287-375 19-111 (274)
85 PF07331 TctB: Tripartite tric 21.8 5E+02 0.011 22.0 12.9 50 322-383 91-140 (141)
86 PF05360 YiaAB: yiaA/B two hel 21.5 1.2E+02 0.0026 22.7 3.2 21 229-249 3-23 (53)
87 PF11384 DUF3188: Protein of u 21.2 1.8E+02 0.004 21.6 4.0 40 210-251 6-45 (49)
88 PF06305 DUF1049: Protein of u 20.9 3.3E+02 0.0071 20.4 5.6 23 316-338 19-41 (68)
89 PRK03557 zinc transporter ZitB 20.8 6.6E+02 0.014 24.9 9.3 25 318-342 85-109 (312)
90 PRK09848 glucuronide transport 20.6 8.8E+02 0.019 24.4 15.6 22 168-189 119-140 (448)
91 TIGR00802 nico high-affinity n 20.5 1.1E+02 0.0025 30.6 3.7 13 359-371 80-92 (280)
92 KOG2881 Predicted membrane pro 20.3 3.3E+02 0.0071 27.4 6.7 68 180-256 88-155 (294)
93 TIGR02840 spore_YtaF putative 20.0 5.1E+02 0.011 24.4 7.8 41 332-378 42-83 (206)
No 1
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=99.95 E-value=1.6e-26 Score=224.74 Aligned_cols=224 Identities=16% Similarity=0.176 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCchhhhhh--h-ccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q 016720 157 ELLSSAWTGFFAGCLHTLSGPDHLAALAP--L-SIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWG 233 (384)
Q Consensus 157 ~lls~~~~gflLG~lHaL~gPDHLAAi~~--L-s~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~ 233 (384)
..+..+..+|++|++|+++ |||.++++. + +++++.++++.+++.|+++|+.++++++++.+.+++.++.|....|+
T Consensus 12 ~~~~l~~~~f~yG~~HAlg-PGHGKavi~sYlv~~~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~l 90 (279)
T PRK10019 12 NAWFFIPSAILLGALHGLE-PGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWL 90 (279)
T ss_pred hHHHHHHHHHHHHHHHhcC-CCcchHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3567778899999999995 999999655 3 44556689999999999999999999999988888888777899999
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCC--------CCcccc--cC-Ccccc---c--------cccccCCccccc---------
Q 016720 234 TRVVGMTLLVIGAMGIKEASEVP--------TPCVAL--EN-GECDV---S--------VYEALDNPAVGK--------- 282 (384)
Q Consensus 234 eivvGvlLIvLGl~~L~~~~~~~--------~~~~~~--~~-g~~~~---h--------~h~h~~~~~~~k--------- 282 (384)
|.++|++++++|+|++++..+.. .+.|.| ++ +++++ | .|+|..++++..
T Consensus 91 e~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~~~~~a~~~r~~~ 170 (279)
T PRK10019 91 QLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIKRRF 170 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHHHhhccchhhhhh
Confidence 99999999999999998754321 111111 00 00100 0 001100101100
Q ss_pred ---ccccchhHHHHHhhccchH-H-HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHH
Q 016720 283 ---KKIGFATFATGIVHGLQPD-A-LMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEK 357 (384)
Q Consensus 283 ---~~~~~s~f~iGilhGL~P~-g-lLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~ 357 (384)
+....+.+.+|+.+|+.|| | +++++.+.+++..+.|++|.++|++||.++|.+++++.....++..+|.+..+++
T Consensus 171 ~~~~~~~~~~l~igl~~Gl~PCpgAl~VLL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~ 250 (279)
T PRK10019 171 DGREVTNGQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTL 250 (279)
T ss_pred cccccccchhhHHHHHhccCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 0112234799999999998 6 5568999999999999999999999999999999999877676666666555555
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhcc
Q 016720 358 L---TWASSLVAIALGFAILISQFFGY 381 (384)
Q Consensus 358 L---~~~s~~vsI~lGll~Ilr~~~g~ 381 (384)
+ +.+++++++++|++++++.+.|.
T Consensus 251 ~~~~p~~s~~l~i~~G~~~~~~~~~~~ 277 (279)
T PRK10019 251 ARRAPYFSSLLIGLVGVYMGVHGFMGI 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 49999999999999999988663
No 2
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=99.87 E-value=3.4e-21 Score=177.85 Aligned_cols=191 Identities=24% Similarity=0.275 Sum_probs=140.4
Q ss_pred HHHHHHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHH----HHHHHHHHH
Q 016720 161 SAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIE----VIRTWGTRV 236 (384)
Q Consensus 161 ~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie----~lq~w~eiv 236 (384)
++..|++ |..||+.||++++.......+++ .+ ..+.|++||.++|.++|++++++|+.+... .++.+..++
T Consensus 2 a~~~Gl~-gs~hC~~mCg~~~~~~~~~~~~~---~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~ 76 (199)
T PF13386_consen 2 AFLLGLL-GSLHCIGMCGPIALALSLSQPKR---WL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGIL 76 (199)
T ss_pred HHHHHHH-HhhhHHHhHHHHHHHHhccCccc---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3567766 77799999999999887666432 23 589999999999999999999999988632 455566667
Q ss_pred HHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccc-cccchhHHHHHhhccchHH--HHHHHHHhhcC
Q 016720 237 VGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKK-KIGFATFATGIVHGLQPDA--LMMVLPALALP 313 (384)
Q Consensus 237 vGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~-~~~~s~f~iGilhGL~P~g--lLaLL~Alal~ 313 (384)
+|++++.+|++.++.... +... ..++ . .+++ .....++ +..++.|.+|+++|+.||+ |.++..|.+.+
T Consensus 77 ~~~~~l~~gl~~l~~~~~-~~~~-~~~~---~--~~~~--~~~~~~~~~~~~~~~~lG~l~gllPCg~~y~~l~~A~~s~ 147 (199)
T PF13386_consen 77 LGLLGLFLGLRLLGGPRL-PKLG-RLGH---G--LARR--LQPLLRKLKGPWGAFLLGFLNGLLPCGPVYFALALAAASG 147 (199)
T ss_pred HHHHHHHHHHHHHhccch-hhHH-hccH---H--HHHH--hHHHHHhcCCccHHHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 777777777777643211 1000 0000 0 0010 0011222 4668999999999999999 56777788889
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016720 314 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFA 372 (384)
Q Consensus 314 s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll 372 (384)
|+..|+++|.+|++||++.|..+..+..+..+ +.+++..++++.+.+++|++
T Consensus 148 s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~-------~~~~~~~r~~g~~~i~~G~~ 199 (199)
T PF13386_consen 148 SPLYGALLMLAFGLGTLPALLLAGLLAGKLSR-------RLRRRLLRLAGVLLIILGIY 199 (199)
T ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999998887643 45577778999999999874
No 3
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=177.64 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=156.8
Q ss_pred HHhHHHHHHHHHHHhhhhcCCCCCchhhhhhhccCCch-hHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHH-HHHHH
Q 016720 155 RTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTR-MESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIE-VIRTW 232 (384)
Q Consensus 155 ~~~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~-~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie-~lq~w 232 (384)
+.+.+. ++....+|.-||++|||.+.......+..+. .+.++..++|++||.++|.++|.+++.+|..+... .+|.+
T Consensus 3 ~~~~l~-~~~~g~lg~gHC~gMCGGi~~afs~~~~~~~~~~~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~ 81 (232)
T COG2836 3 SISFLG-IFLLGLLGGGHCLGMCGGIVLAFSLLIPSKVSSSRLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGV 81 (232)
T ss_pred chhHHH-HHHHHHhcCccHHHhcchHHHHHHHhccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667 5555577999999999999866655443222 22489999999999999999999999999777633 78899
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcCC-CCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHH--HHHHHHH
Q 016720 233 GTRVVGMTLLVIGAMGIKEASEVP-TPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDA--LMMVLPA 309 (384)
Q Consensus 233 ~eivvGvlLIvLGl~~L~~~~~~~-~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~g--lLaLL~A 309 (384)
+.++.|++||++|++.+-+..-.+ ...++.-+ ...+++...-...+.+..++.+.+|++||+.||+ |-+++.|
T Consensus 82 l~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~----~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~lPCGlVYs~l~~A 157 (232)
T COG2836 82 LFIIAGALLIALGLYLLARGGMWSGALKLPFIG----GFLWRLLKPIRLLPLKPLPGALFLGMLWGLLPCGLVYSALAYA 157 (232)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHhhchhcc----hHHHHhhhhhhccccCcchHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999863311000 00000000 0011111100122233467899999999999999 6688999
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 310 LALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 310 lal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
+..+|.++|+++|++|++||.|.|..++.+.++.+. ..|+++.+.++.+.+++|++.+++.
T Consensus 158 ~~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~-------~~r~~~~rl~~gl~~v~g~~~l~~g 218 (232)
T COG2836 158 LSTGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSK-------SSRKRLNRLSGGLMVVVGLIGLWKG 218 (232)
T ss_pred HHcCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888764 5678888999999999998887764
No 4
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=99.78 E-value=7.7e-19 Score=169.53 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=138.5
Q ss_pred HHHHHHhhhhcCCCCCchhhhhhhccC--CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc--HHHHHH----HHH
Q 016720 163 WTGFFAGCLHTLSGPDHLAALAPLSIG--RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH--IEVIRT----WGT 234 (384)
Q Consensus 163 ~~gflLG~lHaL~gPDHLAAi~~Ls~~--r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~--ie~lq~----w~e 234 (384)
.+|+.+|++|++ ||||++|+++++++ ++.+++..+|+.|++||+++++++.+++......+. .+.+++ .++
T Consensus 2 ~la~~lGlrHA~-DaDHiaAId~~trkl~~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~iGt 80 (280)
T TIGR00802 2 LLAYVLGLRHAF-DADHIAAIDNTTRKLMQQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGLIGT 80 (280)
T ss_pred hHHHHhhhhccC-CcchhhhhHHHHHHHhhcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccceeeH
Confidence 578999999999 59999999999875 345688999999999999999998877765533332 234666 456
Q ss_pred HHHHHHHHHHHHHHhH------hhhc-CCCCcccccCCccccccccccC------CcccccccccchhHHHHHhhccchH
Q 016720 235 RVVGMTLLVIGAMGIK------EASE-VPTPCVALENGECDVSVYEALD------NPAVGKKKIGFATFATGIVHGLQPD 301 (384)
Q Consensus 235 ivvGvlLIvLGl~~L~------~~~~-~~~~~~~~~~g~~~~h~h~h~~------~~~~~k~~~~~s~f~iGilhGL~P~ 301 (384)
.++|.+|+++|+.++. +..+ .++.. .++++.+... +... .+..+..+++|.+|.+|+++||+.|
T Consensus 81 ~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~--~~~~~l~~~l-~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD 157 (280)
T TIGR00802 81 LVSALFLLIIALLNLVILRNLLRLFRKVRRGI--YDEADLEALL-GNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhhHHHhh-hccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence 8999999999999882 2111 11110 0000000000 0000 0112235678999999999999985
Q ss_pred -----HHHHHHHHhhc--CChHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 016720 302 -----ALMMVLPALAL--PSRLAGAAFLIMFLLGTVVAMG----SYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALG 370 (384)
Q Consensus 302 -----glLaLL~Alal--~s~~~g~~yml~FglGTilaM~----~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lG 370 (384)
+++++..+.+. -+++..+.|.++|..|..+.-. .+...|++.++...+|. .++..++.++.++++++|
T Consensus 158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L~DT~Dg~lM~~aY~wAf~~P~rkl-yYN~tiT~iSv~vA~~IG 236 (280)
T TIGR00802 158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMALFDTADSLFMVGAYGWAFSDPLRKL-YYNITITGASVAVALFIG 236 (280)
T ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHHhcCccHHHHHHHHHHHhcCcccee-eeehhHHHHHHHHHHHHH
Confidence 23333333332 2367889999999988554322 23344555444333333 688899999999999999
Q ss_pred HHHHHH
Q 016720 371 FAILIS 376 (384)
Q Consensus 371 ll~Ilr 376 (384)
...+++
T Consensus 237 ~ie~l~ 242 (280)
T TIGR00802 237 GIELLG 242 (280)
T ss_pred HHHHHH
Confidence 988765
No 5
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=99.74 E-value=4.7e-16 Score=151.78 Aligned_cols=221 Identities=16% Similarity=0.196 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhhh--h-ccCCchhHHHHHhHHhhhhH--HHHHHHHHHHHHHHhhhhcHHHHHHH
Q 016720 158 LLSSAWTGFFAGCLHTLSGPDHLAALAP--L-SIGRTRMESAAVGALWGCGH--DAGQVIFGLLFLLLKDRLHIEVIRTW 232 (384)
Q Consensus 158 lls~~~~gflLG~lHaL~gPDHLAAi~~--L-s~~r~~~~a~~lGl~wglGH--s~tvvlLGll~~llg~~l~ie~lq~w 232 (384)
.+..+..+|+.|.+|+++ |||-+++.. + ..+.+-+|.+.+++.-++-| +..+++.++..++.+..+..+..+.|
T Consensus 54 ~w~li~~SflyGvlHAlg-PGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~ 132 (303)
T COG2215 54 GWTLIPLSFLYGVLHALG-PGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPW 132 (303)
T ss_pred HHHHHHHHHHHHHHhccC-CCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHH
Confidence 567778899999999995 999999887 2 34444689999999999999 55555555555565677778899999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcC---CCCcc-----------cccCCccccccccccCCcccccc-cccchhHHHHHhhc
Q 016720 233 GTRVVGMTLLVIGAMGIKEASEV---PTPCV-----------ALENGECDVSVYEALDNPAVGKK-KIGFATFATGIVHG 297 (384)
Q Consensus 233 ~eivvGvlLIvLGl~~L~~~~~~---~~~~~-----------~~~~g~~~~h~h~h~~~~~~~k~-~~~~s~f~iGilhG 297 (384)
+|+++.++++.+|+|++++..+. ++|.+ +|+|+.++.+.|+|..++....+ ...+..+.+|+.-|
T Consensus 133 lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l~~G 212 (303)
T COG2215 133 LELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGLTGG 212 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHhcccccHHHHHHHHHHhc
Confidence 99999999999999999876431 11111 11111111122233222222212 22335699999999
Q ss_pred cchH--HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH---HHHHHHHHHHHHHHHHHHH
Q 016720 298 LQPD--ALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPR---ITEKLTWASSLVAIALGFA 372 (384)
Q Consensus 298 L~P~--glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~---l~~~L~~~s~~vsI~lGll 372 (384)
|-|| ++.+++-+...+....|+++++.|++||.++..+++.+....-+... |... ..+++..+++++...++++
T Consensus 213 LrPCpgAi~VLlfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~-~~~g~~~~~~~~~~~~~l~~gli~l~ 291 (303)
T COG2215 213 LRPCPGAIFVLLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAV-RLSGFRTLAKRISYIVSLLGGLIGLY 291 (303)
T ss_pred CccCcHHHHHHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9987 46788888899999999999999999999986666555544333222 2222 3344455555555555555
Q ss_pred HHHHHhhc
Q 016720 373 ILISQFFG 380 (384)
Q Consensus 373 ~Ilr~~~g 380 (384)
+-+..+++
T Consensus 292 ~g~~~l~~ 299 (303)
T COG2215 292 FGLHLLLG 299 (303)
T ss_pred HHHHHHHH
Confidence 55444443
No 6
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.64 E-value=1.9e-14 Score=139.68 Aligned_cols=186 Identities=19% Similarity=0.186 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcH----HHHHH--
Q 016720 158 LLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHI----EVIRT-- 231 (384)
Q Consensus 158 lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~i----e~lq~-- 231 (384)
++.++.++|++|++|+++ |||++++..--.. +.+++.+.|+.|++||++++.+.++++.++...+.. +..+.
T Consensus 1 ~l~ll~laf~~G~~HAl~-PgH~kai~~~~~~-~~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~ 78 (282)
T PF03824_consen 1 LLSLLLLAFLYGLLHALG-PGHGKAIIASYLL-SSRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAV 78 (282)
T ss_pred CHHHHHHHHHHHHHHccC-CChHHHHHHHHHh-hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHH
Confidence 367788999999999995 9999999653222 234567889999999999999999999887666542 12222
Q ss_pred HHHH-HHHHHHHHHHHHHhHhhhc-C-------CC--Cc--ccccC--Cccc---------ccccccc--C---------
Q 016720 232 WGTR-VVGMTLLVIGAMGIKEASE-V-------PT--PC--VALEN--GECD---------VSVYEAL--D--------- 276 (384)
Q Consensus 232 w~ei-vvGvlLIvLGl~~L~~~~~-~-------~~--~~--~~~~~--g~~~---------~h~h~h~--~--------- 276 (384)
|.++ .+.++++.+|.+.++++.. . ++ +. +.+++ .+.+ .+++++. +
T Consensus 79 ~~~~~~~~llv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~g~~~ 158 (282)
T PF03824_consen 79 GLLVSGSFLLVIGIGNWLLLRRLRHLHRHLRRGHQHAHSHDHAHHHHGDHGHFHHPHHHHHSHHHHHDHVGHLFGLGFDT 158 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhcccccccCCCccccccccccccccccc
Confidence 2233 4455555566665543211 0 00 00 00000 0000 0000000 0
Q ss_pred --C-----ccc----ccccccchhHHHHHhhccchHH-HH-HHHHHhhcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 016720 277 --N-----PAV----GKKKIGFATFATGIVHGLQPDA-LM-MVLPALALPSRLAGAAFLIMFLL-GTVVAMGSYTVFIGS 342 (384)
Q Consensus 277 --~-----~~~----~k~~~~~s~f~iGilhGL~P~g-lL-aLL~Alal~s~~~g~~yml~Fgl-GTilaM~~vt~l~g~ 342 (384)
. +.. .........+.+|+..|+.||. .+ +++.+...+....+......+++ |+.+++.++..+...
T Consensus 159 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~~~~~~g~~~~~~~~l~g~~i~~~~~~~~~~~ 238 (282)
T PF03824_consen 159 ASCGHLHGLSAAALPGAPISWILLLGLGFAAGMVPCPGALGVLLFALYLGAFWAGRAAVLAMSLGGMAITVALFAGLAVL 238 (282)
T ss_pred cchhcccccccccccCCCchHHHHHHHHHHhhccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 1112223578999999999974 43 44445555555668888889999 888877777766655
Q ss_pred hhH
Q 016720 343 CSQ 345 (384)
Q Consensus 343 ~~~ 345 (384)
...
T Consensus 239 ~~~ 241 (282)
T PF03824_consen 239 ARL 241 (282)
T ss_pred HHH
Confidence 443
No 7
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=99.61 E-value=8.4e-16 Score=149.31 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=138.7
Q ss_pred HhHHHHHHHHHHHhhhhcCCCCCchhhhhhhccC--CchhHHHHHhHHhhhhHHHHHHHHHHHHHHH----hhhhcHHHH
Q 016720 156 TELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIG--RTRMESAAVGALWGCGHDAGQVIFGLLFLLL----KDRLHIEVI 229 (384)
Q Consensus 156 ~~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~--r~~~~a~~lGl~wglGHs~tvvlLGll~~ll----g~~l~ie~l 229 (384)
..+++...+++.+|.+|++ |+||+||+++.+|+ ++.++...+|..+.+||++.++++.+++... ++++ +.+
T Consensus 46 ~~~~~~~~laYtfGlRHA~-DADHIAAIDN~tRKLmQqgK~p~~VG~fFSlGHStVViL~~l~~~~~~~~~~n~~--~~l 122 (342)
T COG3376 46 ASLLGAGLLAYTLGLRHAF-DADHIAAIDNVTRKLMQQGKNPLGVGFFFSLGHSTVVILLSLALAAASKAFKNRL--PML 122 (342)
T ss_pred hhHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHhCCCCCceeeEEEecCchHHHHHHHHHHHHHHHHHHhcc--HHH
Confidence 3488888999999999999 69999999998874 2345678999999999999999998887644 4554 366
Q ss_pred HHHH----HHHHHHHHHHHHHHHhHh------h-hcCCCCcccccCCcccccccc-ccC----CcccccccccchhHHHH
Q 016720 230 RTWG----TRVVGMTLLVIGAMGIKE------A-SEVPTPCVALENGECDVSVYE-ALD----NPAVGKKKIGFATFATG 293 (384)
Q Consensus 230 q~w~----eivvGvlLIvLGl~~L~~------~-~~~~~~~~~~~~g~~~~h~h~-h~~----~~~~~k~~~~~s~f~iG 293 (384)
++++ +.++|.+|+.+|+.++.- . ++.+... .++++-+.-..+ ..- .+..+-..+.|.+|.+|
T Consensus 123 ~~iGglIgTlVSg~FLllig~lNliiLi~l~k~f~~~~~~~--~~e~ele~ll~~rGll~R~f~~lFrlvtksWhmypvG 200 (342)
T COG3376 123 EEIGGLIGTLVSGFFLLLIGLLNLIILVGLYKIFKKVRRSD--QQEAELEELLTSRGLLNRFFGRLFRLVTKSWHMYPVG 200 (342)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHhcCcHHHHHHHHHHHHhcCcceEeehh
Confidence 6665 468999999999887731 1 1111100 000000000000 000 01112235668999999
Q ss_pred HhhccchH-H----HHHHHHHhhc--CChHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHhhhhhhHHHHHHHHHH
Q 016720 294 IVHGLQPD-A----LMMVLPALAL--PSRLAGAAFLIMFLLGTVVAMG----SYTVFIGSCSQALKDRIPRITEKLTWAS 362 (384)
Q Consensus 294 ilhGL~P~-g----lLaLL~Alal--~s~~~g~~yml~FglGTilaM~----~vt~l~g~~~~~l~~r~~~l~~~L~~~s 362 (384)
+++||+.| + ++++..+.+. -+++.-+.|.++|..|..+.-. .+...++|.+....||. .++..++.++
T Consensus 201 FLFGLGFDTATEiaLL~isa~~a~~gi~~~~il~fPiLFaaGM~L~DtlDg~fM~~AYgWAF~~P~RKi-yYNiTiTaiS 279 (342)
T COG3376 201 FLFGLGFDTATEIALLAISAASAAIGIPIYAILVFPILFAAGMSLLDTLDGFFMNGAYGWAFSSPLRKI-YYNITITAIS 279 (342)
T ss_pred hhhccccchHHHHHHHHHhhHhhhcCCChHHHHHHHHHHHccchhhhccccHHHhhhhhhhhcChhhhH-hhheeHHHHH
Confidence 99999985 2 4444332222 2467788999999988433211 12234444443333333 6777888999
Q ss_pred HHHHHHHHHHHHHH
Q 016720 363 SLVAIALGFAILIS 376 (384)
Q Consensus 363 ~~vsI~lGll~Ilr 376 (384)
-.++.++|....++
T Consensus 280 V~iA~~IG~iE~Lg 293 (342)
T COG3376 280 VLIALFIGGIELLG 293 (342)
T ss_pred HHHHHHHhHHHHHH
Confidence 99999999887664
No 8
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.38 E-value=1.6e-11 Score=130.55 Aligned_cols=205 Identities=14% Similarity=0.071 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCchhhhhhhccC--CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHH-HHHH
Q 016720 157 ELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIG--RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVI-RTWG 233 (384)
Q Consensus 157 ~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~--r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~l-q~w~ 233 (384)
.++.++..|+++.+.||+-.+-++....-+..+ .++++.+..++.|.+|..++|.++|+++.++|..+. ..+ +.|.
T Consensus 168 ~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~-~~~q~~~~ 246 (571)
T PRK00293 168 SLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQ-AALQHPYV 246 (571)
T ss_pred HHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHH
Confidence 455666667777777777544454332222222 245678899999999999999999999999998764 223 4688
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccc--hHH----HHHHH
Q 016720 234 TRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQ--PDA----LMMVL 307 (384)
Q Consensus 234 eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~--P~g----lLaLL 307 (384)
.++.|++++++|+.++.. .+.+-+.. ..+ ... . .. ...+.+.....|.+|++.|+. ||. +.++.
T Consensus 247 ~~~~~~l~v~lgL~~~G~-~~l~lp~~-~~~---~~~--~-~~--~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~ 316 (571)
T PRK00293 247 LIGLSILFVLLALSMFGL-FTLQLPSS-LQT---RLT--L-LS--NRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALL 316 (571)
T ss_pred HHHHHHHHHHHHHHHhcc-eeccCcHH-HHH---Hhh--h-hh--hcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 889999999999987632 12211100 000 000 0 00 011233456899999999997 996 22444
Q ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 308 PALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILIS 376 (384)
Q Consensus 308 ~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr 376 (384)
.+++.++++.|.+.|++|++|+.+.|++++...+... .|..++.++++++.+++.+++|++++-+
T Consensus 317 ~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~l----pk~g~wm~~~k~~~G~~ll~~~~~ll~~ 381 (571)
T PRK00293 317 YIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLL----PKSGPWMNQVKTAFGFVLLALPVFLLER 381 (571)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999888888887765432 2333455678889999999999997654
No 9
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.22 E-value=1.1e-09 Score=102.11 Aligned_cols=193 Identities=22% Similarity=0.264 Sum_probs=136.2
Q ss_pred HHHhhhhcCCCCCchhhhhh----hccC--CchhH----HHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHH
Q 016720 166 FFAGCLHTLSGPDHLAALAP----LSIG--RTRME----SAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTR 235 (384)
Q Consensus 166 flLG~lHaL~gPDHLAAi~~----Ls~~--r~~~~----a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~ei 235 (384)
|+.|..-.++ |+-+..+-- +..+ +++++ .+..++.|..|=.+++.++|.....+++.+. ..++|...
T Consensus 2 f~aGll~~~s-PC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~--~~~~~~~~ 78 (211)
T PF02683_consen 2 FLAGLLSSFS-PCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFG--QISPWLYI 78 (211)
T ss_pred hHHHHHHhcC-cHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 5677888885 776554321 1211 11222 5899999999999999999999999998874 67889999
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc--chHH---HH-HHHHH
Q 016720 236 VVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL--QPDA---LM-MVLPA 309 (384)
Q Consensus 236 vvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~g---lL-aLL~A 309 (384)
+.|++++++|+..+.... .+... +. +...+.+.+++......|..|++.|+ .||. +. ++..+
T Consensus 79 i~g~~~i~~Gl~~l~~~~-~~~l~-~~----------~~~~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a 146 (211)
T PF02683_consen 79 IAGVLLILFGLSLLGLFE-IPFLS-RP----------RLGLRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALA 146 (211)
T ss_pred HHHHHHHHHHHHHHHhhc-chhhh-hh----------hhhhhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 999999999998774322 11000 00 00000011122234689999999999 4884 23 33444
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016720 310 LALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAIL 374 (384)
Q Consensus 310 lal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~I 374 (384)
.+.+++..+..++++|++|..+.+.+++...+...+ ..++..+..++++++.+++.+++|++++
T Consensus 147 ~~~~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~-~~~~~~~~~~~i~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 147 ASSGSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLR-RLRKLRRWSRWIKRISGILLIALGLYLL 210 (211)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999988888776553 2335567889999999999999999886
No 10
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2e-07 Score=88.62 Aligned_cols=196 Identities=22% Similarity=0.268 Sum_probs=139.7
Q ss_pred HHHHHHHHhhhhcCCCCCchhhhhh----hc--cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 016720 161 SAWTGFFAGCLHTLSGPDHLAALAP----LS--IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT 234 (384)
Q Consensus 161 ~~~~gflLG~lHaL~gPDHLAAi~~----Ls--~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~e 234 (384)
..+.+|..|.+=.++ |.=+..+-. +. ..+++++.....+.+-+|=++++..+|.....++.-+. ..++|..
T Consensus 12 ~~~~aflaGlls~lS-PCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~--~~~~~l~ 88 (220)
T COG0785 12 SILLAFLAGLLSFLS-PCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLP--LNRLYLR 88 (220)
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 357788889888887 664433322 11 12236788888999999999999999999999998875 4445999
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccc--hHH---HHHHHH-
Q 016720 235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQ--PDA---LMMVLP- 308 (384)
Q Consensus 235 ivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~--P~g---lLaLL~- 308 (384)
++.|+.++++|+ .+....+.+-.. - +. ......+.......|.+|+..|+. ||. +..++.
T Consensus 89 ~i~gi~li~~Gl-~~l~~~~~~~~~--~---~~--------~~~~~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~l 154 (220)
T COG0785 89 YIAGILLILLGL-LFLGVLRLPLLL--R---FA--------RFQLKGKSVTALGAFLLGLLFALGWTPCIGPILGSILAL 154 (220)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhhhh--h---cc--------hhhhccCCCcchhHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 999999999994 433322211000 0 00 000011234456899999999994 895 333333
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016720 309 ALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAI 373 (384)
Q Consensus 309 Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~ 373 (384)
+...++.+.++.+|.+|++|......+++.+.+...++..++..|..+.++.+++++.+.+|+++
T Consensus 155 aa~~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 155 AASTGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445578999999999999999999999999988774344556788899999999999999875
No 11
>PF13795 HupE_UreJ_2: HupE / UreJ protein
Probab=98.47 E-value=1.1e-06 Score=79.15 Aligned_cols=141 Identities=20% Similarity=0.264 Sum_probs=103.8
Q ss_pred HHHhhhhcCCCCCchhhhhhhcc---CCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q 016720 166 FFAGCLHTLSGPDHLAALAPLSI---GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLL 242 (384)
Q Consensus 166 flLG~lHaL~gPDHLAAi~~Ls~---~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLI 242 (384)
+-+|..|.+.|.||+.-+..+.- .+++|+.++.-..+++||++|..+-..-.. +....|.|.++.+.++
T Consensus 2 ~~~G~~HIl~G~DHlLFll~L~l~~~~~~~~~ll~~vTaFTlgHSiTL~L~~~~~v--------~~~~~~VE~lIAlSI~ 73 (151)
T PF13795_consen 2 FKLGIEHILTGYDHLLFLLALVLPFLFRSWKRLLKLVTAFTLGHSITLALAALGIV--------SVPSRLVEALIALSIA 73 (151)
T ss_pred hHhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCChHHHHHHHHHHHH
Confidence 35799999999999888777643 456889999999999999999887544332 2347889999999999
Q ss_pred HHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHHHHHH
Q 016720 243 VIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFL 322 (384)
Q Consensus 243 vLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~ym 322 (384)
..++++++... ...+.+.+.++..|++||++.+.++. ....++ ..-..-+
T Consensus 74 ~~A~~nl~~~~--------------------------~~~~~~~~v~~~FGLiHGlGFA~~l~---~~~~~~-~~~~~~L 123 (151)
T PF13795_consen 74 FVALENLRRPK--------------------------RSARRRWLVAFGFGLIHGLGFASALK---ELGLPS-DQLLLAL 123 (151)
T ss_pred HHHHHHhhccc--------------------------cccccHHHHHHHHHHHHHHHHHHHHH---HhCCCc-chHHHHH
Confidence 99999982100 01122345789999999998887664 233333 2356778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016720 323 IMFLLGTVVAMGSYTVFIGSCS 344 (384)
Q Consensus 323 l~FglGTilaM~~vt~l~g~~~ 344 (384)
+.|.+|.-+++..+..+.-...
T Consensus 124 l~FNlGVElgQl~iv~~~l~l~ 145 (151)
T PF13795_consen 124 LSFNLGVELGQLAIVLLVLPLL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988776655433
No 12
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=98.12 E-value=0.00034 Score=65.57 Aligned_cols=188 Identities=17% Similarity=0.145 Sum_probs=117.1
Q ss_pred cCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc------HHHHHHHHHHHHHHHHHHHHH
Q 016720 173 TLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH------IEVIRTWGTRVVGMTLLVIGA 246 (384)
Q Consensus 173 aL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~------ie~lq~w~eivvGvlLIvLGl 246 (384)
+++ |.++....-+-.++ |....++.|-+|..++++.+|+++.+..+.+. .+....|.+++.|+.++++|.
T Consensus 9 a~s-P~~i~~~vlll~~~---r~~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~ 84 (214)
T PF11139_consen 9 ALS-PLPIVIAVLLLSRP---RPRRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAV 84 (214)
T ss_pred HhC-hHHHHHHHHHhcCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHH
Confidence 365 77777766543322 22456889999999999999999987755543 246678899999999999999
Q ss_pred HHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccc-h-HH--HHHHHHHhhc--CChHHHHH
Q 016720 247 MGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQ-P-DA--LMMVLPALAL--PSRLAGAA 320 (384)
Q Consensus 247 ~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~-P-~g--lLaLL~Alal--~s~~~g~~ 320 (384)
+..+++....++. ..+ +.. ...++....+.+.+|++-|+. | +. |++.+...+. .++.....
T Consensus 85 ~~~~~~~~~~~~~------~~~----~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~ 151 (214)
T PF11139_consen 85 RVWRRRPRPDPPS------RPP----RWL---ARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVV 151 (214)
T ss_pred HHhhcccccCCCC------Cch----hhh---hhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 8876541111000 000 000 011233456788999988873 2 22 3322222222 23566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 321 FLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPR----ITEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 321 yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~----l~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
+.+.|.+-......+....+...-++.++..++ ++++-..+..++..++|++++...
T Consensus 152 ~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G 212 (214)
T PF11139_consen 152 ALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLGDG 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 888888776665555555555444455444444 444556788999999999998764
No 13
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=97.71 E-value=0.0031 Score=57.25 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=97.5
Q ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHhhhh-c-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCcccccccc
Q 016720 196 AAVGALWGCGHDAGQVIFGLLFLLLKDRL-H-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYE 273 (384)
Q Consensus 196 ~~lGl~wglGHs~tvvlLGll~~llg~~l-~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~ 273 (384)
.+.++...+|+.++..+...+..+.-..+ + .+.++.+..++.++.|+.+|...+++..+..... .
T Consensus 23 ~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~-------~------ 89 (191)
T PF01810_consen 23 FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSST-------Q------ 89 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhh-------h------
Confidence 35577788888888888877665443232 2 4678889999999999999999887643321100 0
Q ss_pred ccCCcccccccccchhHHHHHhhcc-chHHH---HHHHHHhhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 016720 274 ALDNPAVGKKKIGFATFATGIVHGL-QPDAL---MMVLPALAL--PSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQAL 347 (384)
Q Consensus 274 h~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---LaLL~Alal--~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l 347 (384)
+ ..++......|.-|++-.+ -|-++ +.+.+.... .+......+...+.++++..+..++.......++.
T Consensus 90 --~---~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 164 (191)
T PF01810_consen 90 --S---EAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKF 164 (191)
T ss_pred --h---hhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0012233466777776666 47663 344444433 12233444445555555555555555555444333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 348 KDRIPRITEKLTWASSLVAIALGFAILIS 376 (384)
Q Consensus 348 ~~r~~~l~~~L~~~s~~vsI~lGll~Ilr 376 (384)
++ ++. ++++++++++.+++|+.++++
T Consensus 165 ~~--~~~-~~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 165 SS--RRI-RWINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred hh--hHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 21 123 399999999999999999875
No 14
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.36 E-value=0.003 Score=67.56 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=111.4
Q ss_pred HHHHHHHhhhhcCCCCCc-----hhhhhhhcc--CCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 016720 162 AWTGFFAGCLHTLSGPDH-----LAALAPLSI--GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT 234 (384)
Q Consensus 162 ~~~gflLG~lHaL~gPDH-----LAAi~~Ls~--~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~e 234 (384)
+..+|+.|..=.+ ||.= +....-+.. +++..|+..+...|+.|=.++|.++|+++...|..+...-=+.|.-
T Consensus 170 ll~afl~GLlL~f-tPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl 248 (569)
T COG4232 170 LLLAFLGGLLLNF-TPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVL 248 (569)
T ss_pred HHHHHHHHHHHhh-ccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHHH
Confidence 4445566666666 3652 222222222 2345788999999999999999999999999886665222234555
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc--chH--HH--HHHHH
Q 016720 235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL--QPD--AL--MMVLP 308 (384)
Q Consensus 235 ivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~--gl--LaLL~ 308 (384)
....++++++++.++-- .+..-+.-.- ...+ ..+...+.......|..|++-|| .|| +. -+++.
T Consensus 249 ~~la~lf~llALSMfGl-FelqlP~s~q----~~l~-----~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Y 318 (569)
T COG4232 249 GGLAALFVLLALSMFGL-FELQLPSSLQ----TRLT-----QQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLY 318 (569)
T ss_pred HHHHHHHHHHHHHhhhh-eeecCcHHHh----hHHh-----hhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHH
Confidence 55566666666655521 1222111000 0000 00012233335789999999999 588 22 36677
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016720 309 ALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAI 373 (384)
Q Consensus 309 Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~ 373 (384)
.++.+|.+.+..-+...++|+-.-.++++++.+.. +. |-..+-..++.+.+.+.+++-+++
T Consensus 319 iaqsg~~~~g~~~l~al~LGMg~Plllv~~f~~~~---LP-k~G~WM~~vK~~fGFvlLa~aiwL 379 (569)
T COG4232 319 IAQSGNALLGGLALYALGLGMGLPLLLIGVFGNRL---LP-KPGPWMNTVKQAFGFVLLATAIWL 379 (569)
T ss_pred HHhcchHHHHHHHHHHHHHhcccchhhheeccccc---CC-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777777777777656666666655321 11 111233444445555555544443
No 15
>PRK09304 arginine exporter protein; Provisional
Probab=97.36 E-value=0.049 Score=50.79 Aligned_cols=190 Identities=14% Similarity=0.011 Sum_probs=102.6
Q ss_pred HHHHHHHHhhhhcCCCCCchhhhhh-hccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHH-Hhhhh-cHHHHHHHHHHHH
Q 016720 161 SAWTGFFAGCLHTLSGPDHLAALAP-LSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLL-LKDRL-HIEVIRTWGTRVV 237 (384)
Q Consensus 161 ~~~~gflLG~lHaL~gPDHLAAi~~-Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~l-lg~~l-~ie~lq~w~eivv 237 (384)
.++.|+++|..=.+. ||+-.+..- -+.++ ..++..++|..++..+...+..+ ++.-+ ..+.+.+...++-
T Consensus 4 ~~~~g~~~g~~~~~t-PGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~G 76 (207)
T PRK09304 4 YYFQGFALGAAMILP-LGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGG 76 (207)
T ss_pred HHHHHHHHHHHHHhc-cChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888877786 888554443 12221 22667777777777766554321 12111 1246677777888
Q ss_pred HHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc-chHHHH---HHHHHh---
Q 016720 238 GMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPAL--- 310 (384)
Q Consensus 238 GvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Al--- 310 (384)
+.-|+.+|.-.+|++...+ . +. + + + ..+++..++.|.-|++--+ -|=+++ .+.++.
T Consensus 77 a~YLlyLg~~~~rs~~~~~--~---~~-~------~--~---~~~~~~~~~~f~~G~~~~l~NPKa~lf~~~~~~~~~~~ 139 (207)
T PRK09304 77 VAFLLWYGFGAFKTAMSSN--I---EL-A------S--A---EVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQ 139 (207)
T ss_pred HHHHHHHHHHHHHHhcccc--c---cc-c------c--c---cccCccHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence 8888999988776532100 0 00 0 0 0 0001111346777776655 486643 333333
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 311 ALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQF 378 (384)
Q Consensus 311 al~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~ 378 (384)
..++.. ....+..+ +.+......++.+.....+.+ +.++..++++++++.+.+++|+.++++.+
T Consensus 140 ~~~~~~-~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~in~~~g~~l~~~~~~l~~~~~ 203 (207)
T PRK09304 140 LDVEPK-RWFALGTI-SASFLWFFGLALLAAWLAPRL--RTAKAQRIINLFVGCVMWFIALQLARQGI 203 (207)
T ss_pred cCcchh-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 112111 11222222 223444444444444432222 23577889999999999999999987754
No 16
>PRK11469 hypothetical protein; Provisional
Probab=97.34 E-value=0.042 Score=51.22 Aligned_cols=156 Identities=18% Similarity=0.223 Sum_probs=79.6
Q ss_pred chhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccc
Q 016720 191 TRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS 270 (384)
Q Consensus 191 ~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h 270 (384)
++++.....+.++.-|..... +-.++|+.+. +.+.+|.+++.+.+|+.+|+|++++..+.++ + +++
T Consensus 32 ~~~~~~~~~l~~g~~q~~m~~----~g~~~G~~l~-~~i~~~~~~i~~~lL~~lG~~mi~e~~~~~~------~-~~~-- 97 (188)
T PRK11469 32 KFSEALRTGLIFGAVETLTPL----IGWGMGMLAS-RFVLEWNHWIAFVLLIFLGGRMIIEGFRGAD------D-EDE-- 97 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-ccc--
Confidence 456777788888877754433 2233344443 3456677788899999999999998654211 0 000
Q ss_pred cccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 016720 271 VYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALP-SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKD 349 (384)
Q Consensus 271 ~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~-s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~ 349 (384)
+..++...+..+.+|+.--+. +..+=+.+.-.+ ++.. ..+..++-| ..|...+...+. +..
T Consensus 98 --------~~~~~~~~~~~l~LaiAtSiD--AlavGi~~~~~g~~~~~---~~~~ig~~s-~~~~~~G~~lG~---~~g- 159 (188)
T PRK11469 98 --------EPRRRHGFWLLVTTAIATSLD--AMAVGVGLAFLQVNIIA---TALAIGCAT-LIMSTLGMMVGR---FIG- 159 (188)
T ss_pred --------ccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHH---HHHHHHHHH-HHHHHHHHHHHH---HHH-
Confidence 001111223445555444331 211101111111 1111 111111111 123333333332 122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720 350 RIPRITEKLTWASSLVAIALGFAILISQFFG 380 (384)
Q Consensus 350 r~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g 380 (384)
.+..+|...+.+++.+++|+.++++...|
T Consensus 160 --~~~g~~a~~lgG~iLI~iGi~il~~h~~~ 188 (188)
T PRK11469 160 --SIIGKKAEILGGLVLIGIGVQILWTHFHG 188 (188)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 24678889999999999999999886543
No 17
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=96.86 E-value=0.4 Score=45.04 Aligned_cols=161 Identities=20% Similarity=0.264 Sum_probs=90.4
Q ss_pred HHhHHhhhhHHHHHHHHHHHHHHH-hhhh-cHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccc
Q 016720 197 AVGALWGCGHDAGQVIFGLLFLLL-KDRL-HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEA 274 (384)
Q Consensus 197 ~lGl~wglGHs~tvvlLGll~~ll-g~~l-~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h 274 (384)
+.|....+||.++..+.-++..+- ..-+ ....+.+...++-+.-|+.+|...++......+. .
T Consensus 37 ~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~~~~~~~--------~------- 101 (208)
T COG1280 37 RAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGAALAE--------E------- 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--------c-------
Confidence 457777888887776655444321 1111 1245666677778888888999888754221100 0
Q ss_pred cCCcccccccccchhHHHHHhhcc-chHH---HHHHHHHhhcCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 016720 275 LDNPAVGKKKIGFATFATGIVHGL-QPDA---LMMVLPALALPSR----LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQA 346 (384)
Q Consensus 275 ~~~~~~~k~~~~~s~f~iGilhGL-~P~g---lLaLL~Alal~s~----~~g~~yml~FglGTilaM~~vt~l~g~~~~~ 346 (384)
+ ...++...++.|.-|++-.+ -|=. ++.++|....++. ...+.....|.+-....+..+........ +
T Consensus 102 -~--~~~~~~~~~~~f~~G~~~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 177 (208)
T COG1280 102 -A--AGAPSSSRRKAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAARLR-R 177 (208)
T ss_pred -c--cccccchhHHHHHHHHHHHhhCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 00000001367888887777 4865 3455555543332 22233333444443444444444433222 2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 347 LKDRIPRITEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 347 l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
..++ ++..+++++..+.+.+..|+..++++
T Consensus 178 ~l~~-~~~~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 178 LLRR-PRASRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred HHhC-hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334 67899999999999999999987764
No 18
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=96.82 E-value=0.17 Score=45.82 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=84.7
Q ss_pred HHHhHHhhhhHHHHHHHHHHHHHH-Hhhhhc-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCcccccccc
Q 016720 196 AAVGALWGCGHDAGQVIFGLLFLL-LKDRLH-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYE 273 (384)
Q Consensus 196 ~~lGl~wglGHs~tvvlLGll~~l-lg~~l~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~ 273 (384)
.+.++...+|+.++..+..++..+ ++.-+. .+.+..+..++-+..|+.+|...++...+..+ .. .+
T Consensus 18 ~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~~~~~~---~~----~~----- 85 (185)
T TIGR00949 18 RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKKSKKQS---PA----AQ----- 85 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cc----cc-----
Confidence 456778888998888887665543 332222 24567778888888899999877653211000 00 00
Q ss_pred ccCCcccccccccchhHHHHHhhcc-chHHH---HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh-
Q 016720 274 ALDNPAVGKKKIGFATFATGIVHGL-QPDAL---MMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALK- 348 (384)
Q Consensus 274 h~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---LaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~- 348 (384)
+ +..+++.....|.-|++-.+ -|-++ +.+++....++.. ..-..+|.++.+......-..+.....+.+
T Consensus 86 --~--~~~~~~~~~~~f~~g~~~~~~NPk~ilf~~~i~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (185)
T TIGR00949 86 --V--ELAEQTTWKKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTP--TWQLIVLGLTIIVETILWFYVLSLIFSRPAV 159 (185)
T ss_pred --c--ccccCccHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 0 00011111346777777766 48663 3445554322211 111233444433333333333333332222
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHH
Q 016720 349 -DRIPRITEKLTWASSLVAIALGFA 372 (384)
Q Consensus 349 -~r~~~l~~~L~~~s~~vsI~lGll 372 (384)
.+.++..++++++++++.+++|+.
T Consensus 160 ~~~~~~~~~~in~~~g~~l~~~~v~ 184 (185)
T TIGR00949 160 RRKYSKQQKWIDGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 134567889999999988888864
No 19
>PRK10958 leucine export protein LeuE; Provisional
Probab=96.75 E-value=0.5 Score=44.31 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=89.0
Q ss_pred cCCCCCchhhhhh-hccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHH-Hhhhhc-HHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 173 TLSGPDHLAALAP-LSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLL-LKDRLH-IEVIRTWGTRVVGMTLLVIGAMGI 249 (384)
Q Consensus 173 aL~gPDHLAAi~~-Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~l-lg~~l~-ie~lq~w~eivvGvlLIvLGl~~L 249 (384)
++. |||--++.- .+.++.++ .++...+|+.++..+...+..+ ++.-+. .+.+.+...++-+..|+.+|...+
T Consensus 21 ~~s-PGP~~~~v~~~~~~~G~r----~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~ 95 (212)
T PRK10958 21 VLL-PGPNSLYVLSTAARRGVK----AGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML 95 (212)
T ss_pred hcC-CchHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 353 787555443 22222233 4566677887777776554432 222221 356777788888899999998887
Q ss_pred HhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc-chHHHH---HHHHHhhcCC---hHHH-HHH
Q 016720 250 KEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPALALPS---RLAG-AAF 321 (384)
Q Consensus 250 ~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Alal~s---~~~g-~~y 321 (384)
|...+.... . .. + + .+ .....|.-|++-.+ -|-+++ .+.+....++ .... ..+
T Consensus 96 ~~~~~~~~~----~--~~--------~--~-~~--~~~~~f~~g~~~~l~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l 156 (212)
T PRK10958 96 RAALRRWRR----R--AA--------S--A-AP--PYGAPFRRALILSLTNPKAILFFVSFFVQFVDPNYAHPALSFLIL 156 (212)
T ss_pred Hhhcccccc----c--cc--------c--c-Cc--chhHHHHHHHHHHhhChHHHHHHHHHHhcccCCCCcchHHHHHHH
Confidence 653211000 0 00 0 0 00 01235666766655 487644 3334332221 1111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 322 LIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI 375 (384)
Q Consensus 322 ml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il 375 (384)
...+.+........++....... +..++.++..++++++++.+.+.+|+.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~g~~l~~~~i~l~~ 209 (212)
T PRK10958 157 ATILQLVSFCYLSFLIFSGARLA-AYFRRRKKLAAGGNSLVGLLFVGFAAKLAT 209 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222222222223333333222 222233456788999999999999987654
No 20
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=96.36 E-value=0.84 Score=42.23 Aligned_cols=159 Identities=11% Similarity=0.089 Sum_probs=82.6
Q ss_pred HHhHHhhhhHHHHHHHHHHHHHHH-hhhhc-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccc
Q 016720 197 AVGALWGCGHDAGQVIFGLLFLLL-KDRLH-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEA 274 (384)
Q Consensus 197 ~lGl~wglGHs~tvvlLGll~~ll-g~~l~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h 274 (384)
+.++...+|..++..+...+..+- +.-+. .+.+..+..++-+.-|+.+|...++...+ . .++ .
T Consensus 37 r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~~~---~---~~~--~------- 101 (205)
T PRK10520 37 RGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAAGA---I---DLH--T------- 101 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc---c---ccc--c-------
Confidence 456677778888777765544222 21111 24566777778888888899888764210 0 000 0
Q ss_pred cCCcccccccccchhHHHHHhhcc-chHHHH---HHHHHhhcC-Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 016720 275 LDNPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPALALP-SR--LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQAL 347 (384)
Q Consensus 275 ~~~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Alal~-s~--~~g~~yml~FglGTilaM~~vt~l~g~~~~~l 347 (384)
+ ..+ +..+..|.-|++--+ -|=+++ ++++....+ .. ...+.+...+.+-.......++.+.....+..
T Consensus 102 -~---~~~-~~~~~~f~~g~~~~l~NPKailf~~a~~p~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 176 (205)
T PRK10520 102 -L---AST-QSRRRLFKRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDIIVMIGYATLAQRIARWI 176 (205)
T ss_pred -c---cCC-ccHHHHHHHHHHHHhhCcHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 111245666776666 386643 444444222 11 11122223233222233333333333322111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 348 KDRIPRITEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 348 ~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
+.++..++++++++.+.+++|+.+++++
T Consensus 177 --~~~~~~~~i~~~~g~~li~~~~~l~~~~ 204 (205)
T PRK10520 177 --KGPKQMKALNKIFGSLFMLVGALLASAR 204 (205)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2346678899999999999998887653
No 21
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=96.18 E-value=0.029 Score=52.32 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhh--hhcCCCCCchhhhhhhc-cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc-HHHHHHHH
Q 016720 158 LLSSAWTGFFAGC--LHTLSGPDHLAALAPLS-IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH-IEVIRTWG 233 (384)
Q Consensus 158 lls~~~~gflLG~--lHaL~gPDHLAAi~~Ls-~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~-ie~lq~w~ 233 (384)
.++.+..|+..|. .-|.. .-+.++.... ...+..+....-+.|++|+.+-++++++....+++..+ .....+|.
T Consensus 117 ~~gaf~lG~~~~l~~~PC~~--p~l~~il~~a~~~~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i 194 (211)
T PF02683_consen 117 LLGAFLLGLLFGLVWSPCTG--PILAAILALAASSGSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI 194 (211)
T ss_pred cccHHHHHHHHHHHhhhcch--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666766663 35542 2344554443 33345788888899999999999999988877653332 45777888
Q ss_pred HHHHHHHHHHHHHHHh
Q 016720 234 TRVVGMTLLVIGAMGI 249 (384)
Q Consensus 234 eivvGvlLIvLGl~~L 249 (384)
+.+.|++++++|+|.+
T Consensus 195 ~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 195 KRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 22
>PRK10229 threonine efflux system; Provisional
Probab=96.11 E-value=1.1 Score=41.30 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=80.4
Q ss_pred HHhHHhhhhHHHHHHHHHHHHHHH-hhhh-cHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccc
Q 016720 197 AVGALWGCGHDAGQVIFGLLFLLL-KDRL-HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEA 274 (384)
Q Consensus 197 ~lGl~wglGHs~tvvlLGll~~ll-g~~l-~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h 274 (384)
+.+....+|...+..+...+..+- +.-+ ..+.+..+..++-++.|+.+|...++...+. . ..+ +
T Consensus 36 ~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~~~~---~--~~~--------~- 101 (206)
T PRK10229 36 KEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGALKK---E--DVA--------A- 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--ccc--------c-
Confidence 456667777777777754443221 1111 1245667777788888888998887643110 0 000 0
Q ss_pred cCCcccccccccchhHHHHHhhcc-chHHH---HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-Hhhh
Q 016720 275 LDNPAVGKKKIGFATFATGIVHGL-QPDAL---MMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQ-ALKD 349 (384)
Q Consensus 275 ~~~~~~~k~~~~~s~f~iGilhGL-~P~gl---LaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~-~l~~ 349 (384)
.+ ...+.+..+..|.-|++--+ -|-++ ..+++....++..... ....+....+..+..+..+...... ..++
T Consensus 102 -~~-~~~~~~~~~~~f~~G~l~~l~NPka~lf~~ai~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (206)
T PRK10229 102 -EE-PQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVGDNVGAGA-RWGLFALIIVETLAWFTVVASLFALPQMRR 178 (206)
T ss_pred -cc-ccccCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 00 00011112345777777766 48763 3445544322211111 1122222222222222222211111 1222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 350 RIPRITEKLTWASSLVAIALGFAILIS 376 (384)
Q Consensus 350 r~~~l~~~L~~~s~~vsI~lGll~Ilr 376 (384)
..++..++++++++++.+.+|+.++++
T Consensus 179 ~~~~~~~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 179 GYQRLAKWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334677889999999999999877653
No 23
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=95.93 E-value=0.24 Score=45.96 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=82.6
Q ss_pred HHHHhhhhcCCCCCchhhhhhhc---cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q 016720 165 GFFAGCLHTLSGPDHLAALAPLS---IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTL 241 (384)
Q Consensus 165 gflLG~lHaL~gPDHLAAi~~Ls---~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlL 241 (384)
+|.-|..|=+.++||+.++..+. .+..+++ .+..... -....++|.++...+-. -++.|..+...+
T Consensus 21 gf~sGl~HPl~GlDHLl~mlavGl~aa~~~~~~-~~~~p~~----f~~~m~~G~~lg~~g~~------~p~~E~~Ia~Sv 89 (180)
T PF04955_consen 21 GFLSGLLHPLTGLDHLLAMLAVGLWAAQQGGRA-RWALPLA----FVAAMLVGAALGLAGVP------LPGVETGIAASV 89 (180)
T ss_pred hHHHHhhcccccHHHHHHHHHHHHHHHHhccch-HHHHHHH----HHHHHHHHHHHHhccCC------chHHHHHHHHHH
Confidence 88889999999999999998863 1111111 1111111 11222334444433322 256777777778
Q ss_pred HHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHHHHH
Q 016720 242 LVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAF 321 (384)
Q Consensus 242 IvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~y 321 (384)
+++|+...... +.+ .. -........|+.||..-...+ +.......|
T Consensus 90 ~~~G~ll~~~~-r~~----------------------~~---~~~~l~a~falfHG~ahG~e~--------~~~~~~~~y 135 (180)
T PF04955_consen 90 LVLGLLLAFGR-RLP----------------------LW---LALLLVALFALFHGYAHGAEM--------PGAASGLLY 135 (180)
T ss_pred HHHHHHHHhhh-ccc----------------------hh---HHHHHHHHHHHHHhhhhHhhh--------ccccchHHH
Confidence 88887666432 100 00 001134566778888643322 111234457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016720 322 LIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFA 372 (384)
Q Consensus 322 ml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll 372 (384)
..-|.++|..-+.. +...+...+ ++ ..++..+..+.....+|+.
T Consensus 136 ~~G~~~at~~l~~~-g~~~~~~~~---~~---~~~~~~r~~G~~ia~~G~~ 179 (180)
T PF04955_consen 136 AAGFVLATALLHAA-GLALGRLLR---RR---WAARAVRAAGGAIAAAGLM 179 (180)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH---hh---hhHHHHHHHHHHHHHHHHh
Confidence 78888777654443 333332222 11 1222778888888888875
No 24
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=95.34 E-value=2.3 Score=39.26 Aligned_cols=118 Identities=7% Similarity=0.021 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhcc-chHHH---
Q 016720 228 VIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGL-QPDAL--- 303 (384)
Q Consensus 228 ~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL-~P~gl--- 303 (384)
.+.+...++-+.-|+.+|.-.+|.. + . +++ . +. ++ ..|.-|++--+ -|=++
T Consensus 70 ~~~~vlk~~Ga~YLlyLg~~~~~s~---~--~----~~~---------~--~~-~~----~~f~~G~~~~l~NPKa~lf~ 124 (195)
T PRK10323 70 AAVHLLSWAGAAYIVWLAWKIATSP---T--K----EDG---------L--QA-KP----ISFWASFALQFVNVKIILYG 124 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---C--c----ccc---------C--CC-CC----hhHHHHHHHHhHCHHHHHHH
Confidence 5556666777777888988776531 0 0 000 0 00 11 23555666555 48663
Q ss_pred HHHHHHhhcCC-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016720 304 MMVLPALALPS-R--LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAIL 374 (384)
Q Consensus 304 LaLL~Alal~s-~--~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~I 374 (384)
+.+++....++ . ...+.+...|.+........++..... +++...+.+++++++++.+.+++|+.+.
T Consensus 125 ~a~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~g~~l~~~a~~l~ 194 (195)
T PRK10323 125 ITALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHL----FQRLFRQYGRQLNIVLALLLVYCAVRIF 194 (195)
T ss_pred HHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455543321 1 112222223333333333344433333 3333335667899999999999998764
No 25
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=95.10 E-value=0.37 Score=45.30 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=91.0
Q ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcH-H----HHHHHHHHHHHHHHHHHHHHHhHhhhcCC-CCcccccCCcc
Q 016720 194 ESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHI-E----VIRTWGTRVVGMTLLVIGAMGIKEASEVP-TPCVALENGEC 267 (384)
Q Consensus 194 ~a~~lGl~wglGHs~tvvlLGll~~llg~~l~i-e----~lq~w~eivvGvlLIvLGl~~L~~~~~~~-~~~~~~~~g~~ 267 (384)
+.......+..|-.+.-...|++...+...++. + .......++.|.++++.|+|.+-..++.- +++ +.
T Consensus 34 ~~~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~C------r~ 107 (191)
T PF09948_consen 34 RRARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHC------RS 107 (191)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHC------CC
Confidence 345566788899999999999999888665541 1 12222347889999999999885433311 111 10
Q ss_pred ccccccccCCcccccccccchhHHHHHhhcc--chH-HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016720 268 DVSVYEALDNPAVGKKKIGFATFATGIVHGL--QPD-ALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCS 344 (384)
Q Consensus 268 ~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~-glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~ 344 (384)
... .. ..+.+......+-.|+-||+ .+| -.++ +.+++.|+.-+..|.+++.+...
T Consensus 108 p~~----f~--~~~wr~g~~~alr~Gl~hG~~CvGCCWaLM--------------llmfv~G~mnl~wMa~lt~~~~~-- 165 (191)
T PF09948_consen 108 PLS----FL--AFHWRAGARGALRMGLRHGLYCVGCCWALM--------------LLMFVVGVMNLAWMAALTALMFA-- 165 (191)
T ss_pred cch----Hh--hcCCCcccchHHHHHHHHccHHHHHHHHHH--------------HHHHHhccccHHHHHHHHHHHHH--
Confidence 000 00 01112223578999999999 354 3322 22333455556678777776542
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016720 345 QALKDRIPRITEKLTWASSLVAIALGFAI 373 (384)
Q Consensus 345 ~~l~~r~~~l~~~L~~~s~~vsI~lGll~ 373 (384)
||.....+++.+..+.+.++.|+++
T Consensus 166 ----EK~~p~g~~l~r~~G~~l~~~g~~l 190 (191)
T PF09948_consen 166 ----EKLLPWGRRLSRAVGVALIVWGVLL 190 (191)
T ss_pred ----HHhCCcchHHHHHHHHHHHHHHHHH
Confidence 3444557888999999999998875
No 26
>COG1971 Predicted membrane protein [Function unknown]
Probab=94.32 E-value=4.8 Score=37.99 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhhh--hccCCc-hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q 016720 158 LLSSAWTGFFAGCLHTLSGPDHLAALAP--LSIGRT-RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGT 234 (384)
Q Consensus 158 lls~~~~gflLG~lHaL~gPDHLAAi~~--Ls~~r~-~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~e 234 (384)
+++.+..|+.++ + |-.+.-.. +...+. .++.+..+..+|..|.++-++ | .+.|+.++ .-+..|..
T Consensus 3 ~~sllllA~als----m---DAFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pli-G---~~~g~~~s-~~i~~~~~ 70 (190)
T COG1971 3 IISLLLLAIALS----M---DAFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLI-G---WFIGKFLS-TFIAEWAH 70 (190)
T ss_pred HHHHHHHHHHHh----h---HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHH-HHHHHHHH
Confidence 456666676655 2 33222222 222222 267888899999888766543 2 22233332 44677888
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccch-hHHHHHhhccchHHHHHHHHHhhcC
Q 016720 235 RVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFA-TFATGIVHGLQPDALMMVLPALALP 313 (384)
Q Consensus 235 ivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s-~f~iGilhGL~P~glLaLL~Alal~ 313 (384)
++.+++|+.+|++++++..+..+.. +. .++ .+....|. ...+|+.--+ ++..+-+...-++
T Consensus 71 wigf~lL~~lG~~mI~e~f~~~~~~--------~~------~~~--~~~~~~~~~~~~laiatSi--dal~vG~~~a~lg 132 (190)
T COG1971 71 WIGFVLLIILGLKMIIEGFKNEEDE--------FV------DPA--EKHDLNFKELILLAIATSI--DALAVGVGLAFLG 132 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhcc--------hh------ccc--ccchhhHHHHHHHHHHHHH--HHHHHhhhHHHhc
Confidence 8899999999999999865532110 00 000 01111133 4444544333 1211111111111
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 314 -SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 314 -s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
+....+..+.+++ ..|..++..++.-.. ....+|...+.+++.+++|+..++..
T Consensus 133 v~i~~~av~iG~~T----~il~~~G~~IG~~~g------~~~g~~ae~lgGiiLI~~G~~iL~~~ 187 (190)
T COG1971 133 VNILLAAVAIGLIT----LILSALGAIIGRKLG------KFLGKYAEILGGIILIGIGVKILLEH 187 (190)
T ss_pred chHHHHHHHHHHHH----HHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1222233333232 235555555553222 34678888999999999999988763
No 27
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=93.26 E-value=2.3 Score=40.10 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHhhhhcHHHHHH-HHHHHHHHHHHHHHHHHhHhhhc
Q 016720 218 LLLKDRLHIEVIRT-WGTRVVGMTLLVIGAMGIKEASE 254 (384)
Q Consensus 218 ~llg~~l~ie~lq~-w~eivvGvlLIvLGl~~L~~~~~ 254 (384)
.++|+.+. +.+.+ |.+++.+++|+.+|++++++..+
T Consensus 48 ~~~G~~~~-~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 48 MLLGKFLA-KFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455554 44444 78899999999999999988654
No 28
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.23 E-value=0.79 Score=49.51 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhhh--hcCCCCCchhhhhhh-ccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHH-
Q 016720 157 ELLSSAWTGFFAGCL--HTLSGPDHLAALAPL-SIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTW- 232 (384)
Q Consensus 157 ~lls~~~~gflLG~l--HaL~gPDHLAAi~~L-s~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w- 232 (384)
+..+.+++|++.|.. -|.. | .+.++... ....+.+.....-+.|++|+.+-++++|.....+ ++ ....|
T Consensus 288 ~~~gaf~~G~l~~l~~~PC~~-p-~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~---lp--k~g~wm 360 (571)
T PRK00293 288 SLGGVFVMGAISGLICSPCTT-A-PLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL---LP--KSGPWM 360 (571)
T ss_pred chHhHHHHHHHHHHHhCCCch-H-HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc--cCccHH
Confidence 356667777776765 4442 1 34444443 3333456677777899999999999998875332 22 34555
Q ss_pred --HHHHHHHHHHHHHHHHhHh
Q 016720 233 --GTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 233 --~eivvGvlLIvLGl~~L~~ 251 (384)
.+.+.|++|+++|+|.+++
T Consensus 361 ~~~k~~~G~~ll~~~~~ll~~ 381 (571)
T PRK00293 361 NQVKTAFGFVLLALPVFLLER 381 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999864
No 29
>COG2370 HupE Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=3.2 Score=39.20 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=87.2
Q ss_pred HHHHHHhhhhcCCCCCchhhhhhhcc----CCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHH
Q 016720 163 WTGFFAGCLHTLSGPDHLAALAPLSI----GRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVG 238 (384)
Q Consensus 163 ~~gflLG~lHaL~gPDHLAAi~~Ls~----~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvG 238 (384)
+.+|..|..|=+.+.||+.++.++.- .+..++.++.-+.| +...++|.++.+.+-.++ ..|..+.
T Consensus 35 ~~gF~aG~~HPl~GlDHL~~mvAVGlw~a~aag~~~~~~~p~aF-----V~~mi~G~llgl~gv~LP------fvE~~Ia 103 (201)
T COG2370 35 THGFLAGVAHPLTGLDHLLAMVAVGLWAALAAGIRAGWLVPLAF-----VATMILGALLGLSGVHLP------FVEPGIA 103 (201)
T ss_pred cchhhhhccCccccHHHHHHHHHHHHHHHHhcchhhhHHhHHHH-----HHHHHHHHHHhhccCCCC------cchHHHH
Confidence 34588899999999999999998642 11122333333322 334566777777776665 3345555
Q ss_pred HHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHH
Q 016720 239 MTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAG 318 (384)
Q Consensus 239 vlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g 318 (384)
...+++|+..-..+ +.+.+ ... .-.=..|+.||-+=. ...++....
T Consensus 104 ~Sv~~~Gllla~~~-rlp~~--------------------~~~-----~l~gifgLfHG~AhG--------~e~p~~~~~ 149 (201)
T COG2370 104 ASVLGLGLLLALAA-RLPLP--------------------AVA-----ALIGIFGLFHGYAHG--------TELPGGAGA 149 (201)
T ss_pred HHHHHHHHHHHhcc-CCCcH--------------------HHH-----HHHHHHHHHhhhhhh--------ccCCcccch
Confidence 66666676553211 11000 000 011234455554311 111222234
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 319 AAFLIMFLLGTVV-AMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI 375 (384)
Q Consensus 319 ~~yml~FglGTil-aM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il 375 (384)
..|++-|.+.|.. .+..+.+.. .+ ++...++.+.++.....+|+.+..
T Consensus 150 ~~y~lGF~~at~aLh~~g~~lg~-----~l----~~~~~~l~R~vG~~~a~~G~~l~~ 198 (201)
T COG2370 150 LEYVLGFVLATAALHAAGYALGL-----GL----KARLSWLVRLVGFALAAAGFGLLF 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hh----hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4888888887754 222222221 12 245678888899999999988754
No 30
>COG2119 Predicted membrane protein [Function unknown]
Probab=92.79 E-value=3.6 Score=38.77 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCccccccc-ccchhHHHHHhhccch-HHHHHH
Q 016720 229 IRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKK-IGFATFATGIVHGLQP-DALMMV 306 (384)
Q Consensus 229 lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~-~~~s~f~iGilhGL~P-~glLaL 306 (384)
..+|..++.|..-++.|+|.+++.++.+. +. +..+++ ...++|..=++--++= +++..+
T Consensus 63 ~~~~~~~~~~~~Flafav~~l~edk~~~~--------e~-----------~~~~~~~~f~~tfi~~FlaE~GDKTQiATI 123 (190)
T COG2119 63 PERPLAWASGVLFLAFAVWMLIEDKEDDE--------EA-----------QAASPRGVFVTTFITFFLAELGDKTQIATI 123 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccccccc--------cc-----------cccccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 35677778899999999999986433211 00 011111 1123444444444432 456555
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016720 307 LPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGY 381 (384)
Q Consensus 307 L~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g~ 381 (384)
..+...+.++.. -+|++++|...+.+.-..-..+.+|.| .+++..+++++..++|+..+++...+.
T Consensus 124 aLaA~~~~~~~V-------~~Gt~lg~~l~s~laVl~G~~ia~ki~--~r~l~~~aallFl~fal~~~~~~~~~~ 189 (190)
T COG2119 124 ALAADYHSPWAV-------FAGTTLGMILASVLAVLLGKLIAGKLP--ERLLRFIAALLFLIFALVLLWQVFEAL 189 (190)
T ss_pred HHhhcCCCceee-------ehhhHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556665553221 468888888887776666666666765 678899999999999988887766543
No 31
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=92.66 E-value=1.2 Score=43.55 Aligned_cols=91 Identities=21% Similarity=0.297 Sum_probs=49.7
Q ss_pred hhHHHHHhhccchHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh-----hhhHHHHHHHHHH
Q 016720 288 ATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKD-----RIPRITEKLTWAS 362 (384)
Q Consensus 288 s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~-----r~~~l~~~L~~~s 362 (384)
..|..|+.|++.|+..-++..+....++ ....--+.|++|...+-.+.+.+.......+.+ +..........++
T Consensus 7 laf~~G~~HAl~PgH~kai~~~~~~~~~-~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (282)
T PF03824_consen 7 LAFLYGLLHALGPGHGKAIIASYLLSSR-RALRVGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSAVGLLVSGS 85 (282)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhHHHHHHHHH
Confidence 4789999999999865555444443332 233344444555444444444444333333333 1112222222266
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016720 363 SLVAIALGFAILISQFF 379 (384)
Q Consensus 363 ~~vsI~lGll~Ilr~~~ 379 (384)
.++.+++|.++++++.-
T Consensus 86 ~llv~~~~~~~~~~~~~ 102 (282)
T PF03824_consen 86 FLLVIGIGNWLLLRRLR 102 (282)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777788888888754
No 32
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=92.62 E-value=0.65 Score=43.70 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=85.8
Q ss_pred hHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccc
Q 016720 193 MESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVY 272 (384)
Q Consensus 193 ~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h 272 (384)
.+.+..|=.-|.+=.+...+ +......-+ .++|.--..|++=|.+|++.+.+..+ +++++..
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl---~~~~~l~~i----p~~wiLGlLGliPI~lGi~~l~~~~~---------~~e~~~~-- 86 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASL---LGAFGLLFI----PPEWILGLLGLIPIYLGIKALFSGED---------DDEEEAE-- 86 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHH---HHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHcCCC---------ccccccc--
Confidence 44566665555533322222 222222233 35666666799999999987753210 1011100
Q ss_pred cccCCcccccccccchhHHHHHhhccchHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q 016720 273 EALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIP 352 (384)
Q Consensus 273 ~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~ 352 (384)
+. . .+...+..-++...+-+.+ ++|=.-...|-.+.-++..-..++++|.+. .++-+..++-..+...-.+
T Consensus 87 ~~-~-~~~~~~~~i~~Va~iTiAn--GgDNigIYiP~Fa~~s~~~l~v~l~vF~il-----v~v~c~la~~l~~~p~i~~ 157 (191)
T PF03596_consen 87 EK-L-NSPKSNSLILTVAAITIAN--GGDNIGIYIPLFASLSLAELIVILIVFLIL-----VGVWCFLAYKLARIPIIAE 157 (191)
T ss_pred cc-c-ccccccchhHHhhhhhhhc--CCCeEEEeehhhhcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHhCChHHHH
Confidence 00 0 0001111223444555555 556444556777777788888888888864 3333333332222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 353 RITEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 353 ~l~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
.++|+-.++.+++.+.+|+++++++
T Consensus 158 ~leryg~~l~p~v~I~LGi~Il~es 182 (191)
T PF03596_consen 158 FLERYGRWLVPIVYIGLGIYILIES 182 (191)
T ss_pred HHHHhcccHHHHHHHHhCceeeEeC
Confidence 5788888999999999999987764
No 33
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=92.46 E-value=0.38 Score=44.49 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcCCCCCchhhhhhhc-cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q 016720 162 AWTGFFAGCLHTLSGPDHLAALAPLS-IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMT 240 (384)
Q Consensus 162 ~~~gflLG~lHaL~gPDHLAAi~~Ls-~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvl 240 (384)
.+..|.+|+.+.+-.|+.+-.+.... ...+..+.....+.+++|-....++++.+...++++. +++...++|++
T Consensus 118 ~~~~~~lG~l~gllPCg~~y~~l~~A~~s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~-----~~~~~r~~g~~ 192 (199)
T PF13386_consen 118 PWGAFLLGFLNGLLPCGPVYFALALAAASGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRL-----RRRLLRLAGVL 192 (199)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 35566777777775466543333322 2335788999999999999999999888888776654 45555689999
Q ss_pred HHHHHHH
Q 016720 241 LLVIGAM 247 (384)
Q Consensus 241 LIvLGl~ 247 (384)
++++|+|
T Consensus 193 ~i~~G~~ 199 (199)
T PF13386_consen 193 LIILGIY 199 (199)
T ss_pred HHHHHHC
Confidence 9999986
No 34
>TIGR00948 2a75 L-lysine exporter.
Probab=91.72 E-value=9.7 Score=34.31 Aligned_cols=147 Identities=18% Similarity=0.062 Sum_probs=75.2
Q ss_pred hHHhhhhHHHHHHHHHHHHHHH-hhhhc-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccC
Q 016720 199 GALWGCGHDAGQVIFGLLFLLL-KDRLH-IEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALD 276 (384)
Q Consensus 199 Gl~wglGHs~tvvlLGll~~ll-g~~l~-ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~ 276 (384)
|+...+|+.++..+..++..+- +.-+. .+.+.++..++-+..|+.+|.-.+|...+.+ . ++ +.+ +
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~~~~--~---~~-~~~----~--- 88 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAWRGP--G---AL-VPD----E--- 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c---cc-ccc----c---
Confidence 8888999999888876655332 22221 2466777778888899999988887532110 0 00 000 0
Q ss_pred CcccccccccchhHHHHHhhcc-chHHHH---HHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 016720 277 NPAVGKKKIGFATFATGIVHGL-QPDALM---MVLPALALP-SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRI 351 (384)
Q Consensus 277 ~~~~~k~~~~~s~f~iGilhGL-~P~glL---aLL~Alal~-s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~ 351 (384)
.++...++.|.-|++-.+ -|=+++ ++.++.... ....-..+...+.+........++.+.....+.+ +.
T Consensus 89 ----~~~~~~~~~f~~G~~~~l~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~ 162 (177)
T TIGR00948 89 ----PKKMGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPLL--AS 162 (177)
T ss_pred ----ccccCHHHHHHHHHHHHHhCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 001112346777877766 486644 333443211 1112222333333333444444444443332211 23
Q ss_pred hHHHHHHHHHHHH
Q 016720 352 PRITEKLTWASSL 364 (384)
Q Consensus 352 ~~l~~~L~~~s~~ 364 (384)
++..++++++++.
T Consensus 163 ~~~~~~i~~~~g~ 175 (177)
T TIGR00948 163 PKVWRIINLVVAV 175 (177)
T ss_pred ccHHHHHHHHHhh
Confidence 3566777777665
No 35
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.54 E-value=3.2 Score=41.74 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720 351 IPRITEKLTWASSLVAIALGFAILISQFFG 380 (384)
Q Consensus 351 ~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g 380 (384)
......++..++..+.+++|+++++|..-+
T Consensus 126 ~~~s~~~lE~~S~~Ll~~~G~w~~~r~lr~ 155 (303)
T COG2215 126 FALSEPWLELISFLLLILLGLWLLWRTLRR 155 (303)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999997653
No 36
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=89.67 E-value=16 Score=35.36 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=33.4
Q ss_pred hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc--HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 016720 192 RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH--IEVIRTWGTRVVGMTLLVIGAMGIKEA 252 (384)
Q Consensus 192 ~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~--ie~lq~w~eivvGvlLIvLGl~~L~~~ 252 (384)
|++.......|+++= .+++.++........ +.....|...+.++.|++.|++.+|++
T Consensus 31 ~k~~~~i~~~Y~~l~----~~l~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W 89 (224)
T PF09930_consen 31 RKEIALIALGYGLLF----LLLGYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKW 89 (224)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776666543 333333333321111 223334456789999999999999875
No 37
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=88.89 E-value=2.6 Score=41.93 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=56.6
Q ss_pred HHhhhhcCCCCCchhhhhh---hccCCchhHHHHHhHHhhhhHHHHHHHHHHHHH-HHhhhhc-HHHHHHHH---HHHHH
Q 016720 167 FAGCLHTLSGPDHLAALAP---LSIGRTRMESAAVGALWGCGHDAGQVIFGLLFL-LLKDRLH-IEVIRTWG---TRVVG 238 (384)
Q Consensus 167 lLG~lHaL~gPDHLAAi~~---Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~-llg~~l~-ie~lq~w~---eivvG 238 (384)
.+|+.|.+- |.+-|.++- ...+ ..+..+..-+.+++|=.+++..+|+++. .+++... ....+.+. ++++|
T Consensus 182 ~igl~~Gl~-PCpgAl~VLL~a~~lg-~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~ 259 (279)
T PRK10019 182 LFGLTGGLI-PCPAAITVLLICIQLK-ALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSS 259 (279)
T ss_pred HHHHHhccC-CCHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445666675 555443322 2334 3566788889999999999999999984 3322211 12344444 49999
Q ss_pred HHHHHHHHHHhHhhh
Q 016720 239 MTLLVIGAMGIKEAS 253 (384)
Q Consensus 239 vlLIvLGl~~L~~~~ 253 (384)
++.+++|++..++.+
T Consensus 260 ~l~i~~G~~~~~~~~ 274 (279)
T PRK10019 260 LLIGLVGVYMGVHGF 274 (279)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887643
No 38
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=86.45 E-value=29 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720 353 RITEKLTWASSLVAIALGFAILISQFFG 380 (384)
Q Consensus 353 ~l~~~L~~~s~~vsI~lGll~Ilr~~~g 380 (384)
.-.+.++++.+++..++|+-+++..+.+
T Consensus 174 ~g~~vi~Ri~Glil~aiavq~i~~Gl~~ 201 (203)
T PF01914_consen 174 TGLQVITRIMGLILAAIAVQMILSGLRG 201 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999887654
No 39
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=12 Score=35.92 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHh--hhhcCCCCCchhhhhhhccC-CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhh--hhcHHHHHHH
Q 016720 158 LLSSAWTGFFAG--CLHTLSGPDHLAALAPLSIG-RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKD--RLHIEVIRTW 232 (384)
Q Consensus 158 lls~~~~gflLG--~lHaL~gPDHLAAi~~Ls~~-r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~--~l~ie~lq~w 232 (384)
.+..+..|+..| -.=|.+ .-+.++..+... ++..+....-+.|++|=.+-++++++...-+.+ .-.+.+.+.+
T Consensus 126 ~~~~f~lGl~f~~~wtPC~g--Pil~sil~laa~~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~ 203 (220)
T COG0785 126 ALGAFLLGLLFALGWTPCIG--PILGSILALAASTGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGA 203 (220)
T ss_pred chhHHHHHHHHHHHhccchh--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444 445663 235555555443 335788999999999999999999999987765 2224577778
Q ss_pred HHHHHHHHHHHHHHHH
Q 016720 233 GTRVVGMTLLVIGAMG 248 (384)
Q Consensus 233 ~eivvGvlLIvLGl~~ 248 (384)
.+.+.|+.+|++|++.
T Consensus 204 i~~~~G~lli~~Gv~l 219 (220)
T COG0785 204 IEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999999975
No 40
>COG4280 Predicted membrane protein [Function unknown]
Probab=85.17 E-value=9.1 Score=36.73 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q 016720 160 SSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGM 239 (384)
Q Consensus 160 s~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGv 239 (384)
+.+..+|.....--++ .+-|+++..-. ++|+ -.+.| -.+++.++-.+.+.+|..+.+ ..-++..+++|+
T Consensus 4 si~lAAl~sSlvElvE-a~aIa~avg~~--~~wr-~al~g------a~lglalvl~l~lvlGk~L~l-vPln~lqiv~gv 72 (236)
T COG4280 4 SIFLAALGSSLVELVE-AGAIAAAVGNI--YKWR-LALIG------AVLGLALVLILTLVLGKLLYL-VPLNYLQIVSGV 72 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhh--cccc-HHHHH------HHHHHHHHHHHHHHHccceee-eechHHHHHHHH
Confidence 3344455545555554 55555554433 2233 33333 345556666667778877763 445888999999
Q ss_pred HHHHHHHHHhHhhh
Q 016720 240 TLLVIGAMGIKEAS 253 (384)
Q Consensus 240 lLIvLGl~~L~~~~ 253 (384)
+|+..|---+|+..
T Consensus 73 LLllFG~rw~Rsav 86 (236)
T COG4280 73 LLLLFGYRWIRSAV 86 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987776543
No 41
>PRK10621 hypothetical protein; Provisional
Probab=81.20 E-value=54 Score=31.62 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016720 355 TEKLTWASSLVAIALGFAILISQFF 379 (384)
Q Consensus 355 ~~~L~~~s~~vsI~lGll~Ilr~~~ 379 (384)
+++++++...+.+++|+.++++..+
T Consensus 232 ~~~lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 232 QKLIRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888888999998877655
No 42
>COG1279 Lysine efflux permease [General function prediction only]
Probab=81.11 E-value=53 Score=31.43 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhh-ccchHHHH-
Q 016720 227 EVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVH-GLQPDALM- 304 (384)
Q Consensus 227 e~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilh-GL~P~glL- 304 (384)
+.+.....+.-.++|+..|...++.+.+.... . .. . +..+. ..++....=+.- =|-|-.|+
T Consensus 66 p~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~---~-----~~------~--~~~~~-~~~~~l~~alavT~LNPhvyLD 128 (202)
T COG1279 66 PWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQ---L-----QV------A--EFTKL-KLKKVLLFALAVTLLNPHVYLD 128 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhh---c-----cc------c--ccccc-cHHHHHHHHHHHHHhCchhhhh
Confidence 35555666667788888998888776542110 0 00 0 01111 112222111111 12376654
Q ss_pred --HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 305 --MVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALK--DRIPRITEKLTWASSLVAIALGFAILIS 376 (384)
Q Consensus 305 --aLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~--~r~~~l~~~L~~~s~~vsI~lGll~Ilr 376 (384)
+++++.+..- +..==..|.+|++.+=...=...++.-+.++ .+.|+..|.++.++++++..+++.+..+
T Consensus 129 tvvliGs~~~~~---~~~~k~~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 129 TVVLIGSLAAQL---SDEAKWFFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred hHhhhhhhhhhc---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445443210 0000124677776654443333333333332 2457899999999999999999987654
No 43
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=80.35 E-value=9.9 Score=37.42 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=104.5
Q ss_pred hhhHHhHHHHHHHHHHHhhhhcCCCCCchhhhhh-hccC-CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhh-----hh
Q 016720 152 RLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAP-LSIG-RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKD-----RL 224 (384)
Q Consensus 152 ~~~~~~lls~~~~gflLG~lHaL~gPDHLAAi~~-Ls~~-r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~-----~l 224 (384)
++.....+...|+=-.+|+. +.-.-|..-... +.+. +.+-+.+.....+.-|-.+.-..+|+++-.+.. .+
T Consensus 78 s~v~aa~~~~mW~vMmvamM--lPsaaPmi~~ya~i~r~~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al 155 (283)
T COG5486 78 SIVPAAALLLMWTVMMVAMM--LPSAAPMILLYAEIGRTAAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFAL 155 (283)
T ss_pred chhHHHHHHHHHHHHHHHHh--CccccHHHHHHHHHHHHHHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566666665555532 111222222221 2211 111244555777777877777777777744422 22
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccc-cccccCCcccccccccchhHHHHHhhcc--chH
Q 016720 225 HIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVS-VYEALDNPAVGKKKIGFATFATGIVHGL--QPD 301 (384)
Q Consensus 225 ~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h-~h~h~~~~~~~k~~~~~s~f~iGilhGL--~P~ 301 (384)
.-+....+..+..|++|++-|+|-+-..++. +. +++..... ..+ |..-+..+...|-+|+-||+ .+|
T Consensus 156 ~~p~~s~~~~l~gg~~L~vAGlYQft~LK~~---CL--~qCrtPl~fl~s-----hw~fr~~p~ga~~LGlrhGlyClGC 225 (283)
T COG5486 156 LGPILSPLSGLAGGLTLLVAGLYQFTTLKHA---CL--SQCRTPLSFLFS-----HWRFRAKPVGAFRLGLRHGLYCLGC 225 (283)
T ss_pred ccchhcchhhHHHHHHHHHhhhhhhccHHHH---HH--HHccchHHHHHH-----hcCcccCcchhhhhccccccchHHH
Confidence 2356778888999999999998776432221 10 01111100 001 12222344579999999999 365
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 302 ALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI 375 (384)
Q Consensus 302 glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il 375 (384)
-. +=++.|++=|++.+.-|.+++.+.-. ||...-.|++.++++.+.+..|.+.+.
T Consensus 226 CW-------------ALm~llfv~Gvmnl~Wma~ial~vli------EK~~~~Gr~~srv~gall~a~gaw~l~ 280 (283)
T COG5486 226 CW-------------ALMLLLFVVGVMNLLWMALIALLVLI------EKQTSPGRRLSRVAGALLAAAGAWLLV 280 (283)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HhccCcccchHHHHHHHHHHHHHhhcc
Confidence 31 11223344466667777776665332 233234577777888888888876554
No 44
>PRK10995 inner membrane protein; Provisional
Probab=78.47 E-value=62 Score=30.73 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=27.1
Q ss_pred HHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720 345 QALKDRI-PRITEKLTWASSLVAIALGFAILISQFFG 380 (384)
Q Consensus 345 ~~l~~r~-~~l~~~L~~~s~~vsI~lGll~Ilr~~~g 380 (384)
.++.++. +.-.+.++++.+++..++|+-++.+.+-+
T Consensus 179 ~~l~~~LG~~gl~ii~Ri~GliL~aiavq~i~~Gi~~ 215 (221)
T PRK10995 179 GAIMRLLGKGGIEAISRLMGFLLVCMGVQFIINGILE 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 34568899999999999999999987644
No 45
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=73.13 E-value=23 Score=34.42 Aligned_cols=85 Identities=27% Similarity=0.338 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhcCCCCCch-hhhh-hhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q 016720 162 AWTGFFAGCLHTLSGPDHL-AALA-PLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGM 239 (384)
Q Consensus 162 ~~~gflLG~lHaL~gPDHL-AAi~-~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGv 239 (384)
.+..+.+|+.|.+-.|+-+ .+.+ +++.+ +..+-....+.+|+|-.-....+|.....+.+ ..+.-..+.+|.
T Consensus 132 ~~~~~~lG~~wG~lPCGlVYs~l~~A~~tg-S~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~-----~~r~~~~rl~~g 205 (232)
T COG2836 132 LPGALFLGMLWGLLPCGLVYSALAYALSTG-SAFEGALVMLAFGLGTLPNLLAMGIFSSKLSK-----SSRKRLNRLSGG 205 (232)
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH-----HHHHHHHHHHhH
Confidence 5677888888889545542 2222 23444 56888999999999999999999988877653 345666678888
Q ss_pred HHHHHHHHHhHhh
Q 016720 240 TLLVIGAMGIKEA 252 (384)
Q Consensus 240 lLIvLGl~~L~~~ 252 (384)
+++++|++.+++.
T Consensus 206 l~~v~g~~~l~~g 218 (232)
T COG2836 206 LMVVVGLIGLWKG 218 (232)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 46
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=73.09 E-value=5.7 Score=37.49 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=71.7
Q ss_pred HHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHH
Q 016720 214 GLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATG 293 (384)
Q Consensus 214 Gll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iG 293 (384)
.+.+.+.+.-++ ++|.--..|++=+.+|++.++...+ +++.+ .++...+++. --.+|
T Consensus 54 SL~~a~v~~fvp----~e~I~glLGLIPi~LGik~l~~~d~---------d~e~~-------~~e~L~~~~~---k~lv~ 110 (205)
T COG4300 54 SLLFAFVLNFVP----EEWILGLLGLIPIYLGIKVLILGDD---------DGEEE-------AKEELAFKKN---KNLVG 110 (205)
T ss_pred HHHHHHHHhhCc----HHHHHHHHhHHHHHHhhHHhhcccC---------cCchh-------hhHHHHhccc---cceEE
Confidence 333344455544 5666556799999999988764221 11111 0111111110 01123
Q ss_pred Hhhcc--chHH---HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Q 016720 294 IVHGL--QPDA---LMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIA 368 (384)
Q Consensus 294 ilhGL--~P~g---lLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~ 368 (384)
.+.+. +-|| .-...|-.+.-++..-..++++|.++ ...-.+.+....+..--...++++-+++.+.+.++
T Consensus 111 tV~~vT~AscG~DNIgvyvP~F~tl~~~~llv~l~vF~v~-----I~iL~~~a~~la~ip~I~evlEk~sr~i~~~V~I~ 185 (205)
T COG4300 111 TVAIVTFASCGADNIGVFVPYFATLNLANLLVALLVFLVM-----IYILVFLAQKLAQIPPIGEVLEKYSRWIVAFVYIG 185 (205)
T ss_pred EEEEEEEeccCCcceEEEeeeeecccHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 33333 3344 33445666666677777788888764 22222222211111111235788888999999999
Q ss_pred HHHHHHHHH
Q 016720 369 LGFAILISQ 377 (384)
Q Consensus 369 lGll~Ilr~ 377 (384)
+|+++++.+
T Consensus 186 LGlfIl~E~ 194 (205)
T COG4300 186 LGLFILYEN 194 (205)
T ss_pred hhheeEEeC
Confidence 999988764
No 47
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=66.50 E-value=47 Score=31.03 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHHHhhhhcCCCCCchhhhhhhccC-CchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc--HHHHHH
Q 016720 155 RTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIG-RTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH--IEVIRT 231 (384)
Q Consensus 155 ~~~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~-r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~--ie~lq~ 231 (384)
+..-...++.|+.+|..-.-+++-=++++..+... -++......-+.|.+-=.....+.-+...+.+++.+ .+.++.
T Consensus 108 ~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~ 187 (214)
T PF11139_consen 108 SASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRS 187 (214)
T ss_pred cCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455677888888877665433345555555543 234455666666666655555555555666676664 567777
Q ss_pred HHH----HHHHHHHHHHHHHHhHh
Q 016720 232 WGT----RVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 232 w~e----ivvGvlLIvLGl~~L~~ 251 (384)
|++ .+.++++.++|++.+.+
T Consensus 188 wl~~~~~~i~~~i~~i~G~~l~~~ 211 (214)
T PF11139_consen 188 WLRRHSRQILAVILLIVGALLLGD 211 (214)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHh
Confidence 775 57888999999988754
No 48
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=66.25 E-value=3 Score=39.39 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhHHHHHhhccchHHHHHHHH
Q 016720 229 IRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATFATGIVHGLQPDALMMVLP 308 (384)
Q Consensus 229 lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f~iGilhGL~P~glLaLL~ 308 (384)
.++|.--..|++=|.+|++.+++..+ +++.. ..++ .+.....++.-++...+=+.| ++|=.-..+|
T Consensus 53 P~~wIlGlLGliPI~lGi~~l~~~~~---------~~~~~-~~~~--~~~~~~~~~~~~~Va~iTiAn--GgDNIgIYvP 118 (193)
T TIGR00779 53 PEKWVLGLLGLIPIYLGIKVAIKGEC---------DEDER-AILS--LNESGKLNKLFLTVAFITIAS--GADNIGIYVP 118 (193)
T ss_pred CHHHHHhHHhHHHHHHHHHHHhcccc---------ccccc-cccc--ccccccCCCceEEEEEEEEec--cCceeEEEee
Confidence 36677777899999999988865210 00000 0000 000000111112333333333 4564555567
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 309 ALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILIS 376 (384)
Q Consensus 309 Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr 376 (384)
-.+..++..-..++++|.+.+ ++-++.++-..+...-...++|+-+++.+++.+.+|+++++.
T Consensus 119 lFa~~s~~~l~v~livF~ilv-----~vwc~~a~~l~~~p~I~~~leryg~~lvp~VlIgLGi~Il~e 181 (193)
T TIGR00779 119 YFVTLSMTNLLLTLIVFLIMV-----FFLCFTAYRLANFPGISETVEKYSRWIMPIVFIGLGIYIIIE 181 (193)
T ss_pred eccCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCchHHHHHHHhCCeeeeeeEhhcCeeeeEe
Confidence 778788888888888888643 222222222221211123577888889999999999988776
No 49
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=64.44 E-value=17 Score=27.80 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=32.0
Q ss_pred hHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHH
Q 016720 193 MESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIG 245 (384)
Q Consensus 193 ~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLG 245 (384)
++.+...+..++=+ .++-.+-..+|+.+. +.+++|.+++.|++|+.+|
T Consensus 20 ~~~~~~~~~ig~~~----~~~~~~G~~~G~~~~-~~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 20 RIILLIALIIGIFQ----FIMPLLGLLLGRRLG-RFIGSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
Confidence 34555555555433 333444455667775 5888999999999999886
No 50
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=61.97 E-value=1.4e+02 Score=28.08 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 355 TEKLTWASSLVAIALGFAILISQF 378 (384)
Q Consensus 355 ~~~L~~~s~~vsI~lGll~Ilr~~ 378 (384)
.++...+++++.++.|+..+.+..
T Consensus 130 G~~w~ii~Gvl~ii~g~ill~~P~ 153 (185)
T COG3247 130 GWWWMIISGVLGIIAGLILLFNPV 153 (185)
T ss_pred CcHHHHHHHHHHHHHHHHHHHccH
Confidence 566778888888888887766543
No 51
>PRK11469 hypothetical protein; Provisional
Probab=60.81 E-value=27 Score=32.65 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=37.4
Q ss_pred hHHHHHhHHhhhhHH---HHHHHHHHHH-------HHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 193 MESAAVGALWGCGHD---AGQVIFGLLF-------LLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 193 ~~a~~lGl~wglGHs---~tvvlLGll~-------~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
.+++.+|+-.++-.. .+..++|++- ..+|+++. +.+.+|.|++.|++|+++|+..+.+
T Consensus 117 iDAlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g-~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 117 LDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIG-SIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666655443 2222222222 23466655 5788999999999999999998865
No 52
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=60.60 E-value=1.4e+02 Score=27.56 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q 016720 230 RTWGTRVVGMTLLVIGAMGIKEA 252 (384)
Q Consensus 230 q~w~eivvGvlLIvLGl~~L~~~ 252 (384)
+.+.+..+|++++..+++.++++
T Consensus 89 ~~~l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 89 DDILKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999988753
No 53
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=60.51 E-value=1.6e+02 Score=32.46 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=65.7
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCcccccccchhhHHhHHHHHHHHHHHhhhhcCCCCC
Q 016720 99 RTTGGKKAIAAGTLVALSAAIVFLIHPVFAPAAFATFQTAARTGGPAAAAVGSRLIRTELLSSAWTGFFAGCLHTLSGPD 178 (384)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~~~gflLG~lHaL~gPD 178 (384)
+.+++.|.-...-.....++..++..|-.+||--.++--++.+|- .-......+.+|+. |.=
T Consensus 280 ~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~----------~~~g~~~l~al~LG--------Mg~ 341 (569)
T COG4232 280 QQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGN----------ALLGGLALYALGLG--------MGL 341 (569)
T ss_pred hhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcch----------HHHHHHHHHHHHHh--------ccc
Confidence 334444444445566777888888888777775555555555552 11112333333433 334
Q ss_pred chhhhhhhc-----cCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhH
Q 016720 179 HLAALAPLS-----IGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIK 250 (384)
Q Consensus 179 HLAAi~~Ls-----~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~ 250 (384)
|+..+.... +...|++.+.. .++.++++..+.++-.-+ -+.|...+.|..++++|+|.+.
T Consensus 342 Plllv~~f~~~~LPk~G~WM~~vK~--------~fGFvlLa~aiwLl~~~~----~e~~~~~L~~~l~~a~g~wl~~ 406 (569)
T COG4232 342 PLLLIGVFGNRLLPKPGPWMNTVKQ--------AFGFVLLATAIWLLWRVL----PEVGALALWGLLLLAFGAWLFG 406 (569)
T ss_pred chhhheecccccCCCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHh
Confidence 444444322 22235554442 235566666666554333 2455556778888888887753
No 54
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=58.23 E-value=1e+02 Score=29.97 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 016720 210 QVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEA 252 (384)
Q Consensus 210 vvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~ 252 (384)
+++=|++-.+++++++ |++++-...+.|+..+.+|+.+..+.
T Consensus 11 Il~G~~iG~~~~~~i~-~~~~~~l~~~~Gl~~l~iGi~~~~~~ 52 (226)
T PF04474_consen 11 ILLGGLIGLLLGRRIP-ERIKDTLMQALGLCVLAIGISMALKG 52 (226)
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3333444456688987 89999999999999999999888653
No 55
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=55.75 E-value=53 Score=27.05 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 016720 212 IFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVP 256 (384)
Q Consensus 212 lLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~ 256 (384)
++.++..+++-++ +...|.-.|+.+|+.|+++|.+.+|...+.+
T Consensus 34 ~~vlLivla~ls~-~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~ 77 (81)
T PF11364_consen 34 LVVLLIVLAVLSF-IKIFQLPPEIFVGLAMIVLGYFALRDISKLS 77 (81)
T ss_pred HHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333444444443 3567777899999999999999998765543
No 56
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=52.15 E-value=1.4e+02 Score=32.14 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhhhhccCCchh-HHHHHhHHhhhhHHHHHHHHHHHHHHHhhh
Q 016720 159 LSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRM-ESAAVGALWGCGHDAGQVIFGLLFLLLKDR 223 (384)
Q Consensus 159 ls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~~-~a~~lGl~wglGHs~tvvlLGll~~llg~~ 223 (384)
+.++...|++|+.-++.+|-=-+.+-.+..+++.. -..+....+++.+.++-.+-|+++..+|-.
T Consensus 104 ~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 104 WLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 33444556666666664332222222233333222 334577889999999988888888777744
No 57
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=50.15 E-value=84 Score=28.21 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=34.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 201 LWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 201 ~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
-.-++......+++......++++.....+ |.+.+.|++++.+|++.+++
T Consensus 141 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 141 GIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 334444455555566656666666644455 99999999999999998764
No 58
>PF14007 YtpI: YtpI-like protein
Probab=49.48 E-value=24 Score=29.47 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhc
Q 016720 229 IRTWGTRVVGMTLLVIGAMGIKEASE 254 (384)
Q Consensus 229 lq~w~eivvGvlLIvLGl~~L~~~~~ 254 (384)
.+++..+++|.+++++|+.+++.-.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67888999999999999999975433
No 59
>COG0730 Predicted permeases [General function prediction only]
Probab=49.19 E-value=2.4e+02 Score=26.77 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 355 TEKLTWASSLVAIALGFAILISQF 378 (384)
Q Consensus 355 ~~~L~~~s~~vsI~lGll~Ilr~~ 378 (384)
+++++++...+.+++++.++++..
T Consensus 232 ~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 232 PKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788889999999999999988864
No 60
>COG4827 Predicted transporter [General function prediction only]
Probab=46.18 E-value=2.9e+02 Score=26.89 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=45.8
Q ss_pred HHHHhhhhcCCCCCchhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHH
Q 016720 165 GFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVI 244 (384)
Q Consensus 165 gflLG~lHaL~gPDHLAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvL 244 (384)
=|..|..-.++ ||- ++++ ++++..++..|+++--..-.+...+.....+++ ..+.--...+.+++||..
T Consensus 19 ilIfGlKtGlg-~GF----ag~~----~r~a~~Iaa~yg~li~a~~gla~~vs~~~~~~l--s~y~llihvllslfLIga 87 (239)
T COG4827 19 ILIFGLKTGLG-CGF----AGIT----TREALTIAASYGFLILAFGGLADHVSFDAFERL--SAYGLLIHVLLSLFLIGA 87 (239)
T ss_pred HHHHhhhhccc-ccc----cccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 34567777774 662 2332 456888888888764333222222222222222 123333457899999999
Q ss_pred HHHHhHhhhc
Q 016720 245 GAMGIKEASE 254 (384)
Q Consensus 245 Gl~~L~~~~~ 254 (384)
|++..|++..
T Consensus 88 GI~t~rkW~~ 97 (239)
T COG4827 88 GIYTQRKWNS 97 (239)
T ss_pred hHHHHHHhhc
Confidence 9999987643
No 61
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=44.80 E-value=31 Score=28.79 Aligned_cols=41 Identities=27% Similarity=0.571 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH----hhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 208 AGQVIFGLLFLLL----KDRLHIEVIRTWGTRVVGMTLLVIGAMGI 249 (384)
Q Consensus 208 ~tvvlLGll~~ll----g~~l~ie~lq~w~eivvGvlLIvLGl~~L 249 (384)
++..++|++-+.. +..++++.+..| ++++|+-++++|+.+-
T Consensus 39 ~~lm~~Gl~WlvvyYl~~~~~P~~~lG~W-N~~IGfg~~~~G~~mt 83 (87)
T PRK02251 39 VALMIIGLIWLVVYYLSNGSLPIPALGAW-NLVIGFGLIMAGFGMT 83 (87)
T ss_pred HHHHHHHHHHHHHHhhhCCCcCcccccch-hHHHHHHHHHHHHHHH
Confidence 3445566554322 667777778888 7899999998888664
No 62
>PRK11111 hypothetical protein; Provisional
Probab=43.90 E-value=2.9e+02 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016720 354 ITEKLTWASSLVAIALGFAILISQFFG 380 (384)
Q Consensus 354 l~~~L~~~s~~vsI~lGll~Ilr~~~g 380 (384)
-.+.+.++.+++..++|+-++++.+-+
T Consensus 181 G~~vi~RimGliL~aiaVq~i~~Gi~~ 207 (214)
T PRK11111 181 GINVITRIMGLLLMALGIEFIVTGIKG 207 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999987644
No 63
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=41.88 E-value=4.4e+02 Score=27.78 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 314 SRLAGAAFLIMFLLGTVVAMGSYTVFIG 341 (384)
Q Consensus 314 s~~~g~~yml~FglGTilaM~~vt~l~g 341 (384)
++.+-..+=..++.|++++|...+....
T Consensus 242 sv~eTT~Lta~~~~G~L~G~~~~g~~l~ 269 (403)
T PF03209_consen 242 SVGETTRLTAFWGGGTLLGMLLAGFLLS 269 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556777788899999999999876544
No 64
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.87 E-value=1.2e+02 Score=33.25 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh---hh-h--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 016720 314 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKD---RI-P--RITEKLTWASSLVAIALGFAILISQFFGYSL 383 (384)
Q Consensus 314 s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~---r~-~--~l~~~L~~~s~~vsI~lGll~Ilr~~~g~~~ 383 (384)
++..+..|++.||+ +.+-.++++++....-.+.. +. . +--.++-...++.+++.|+ +++.+||+++
T Consensus 347 T~~~ai~f~lfFGm--M~gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~il~~~gi~sii~G~--lyG~fFG~~~ 418 (646)
T PRK05771 347 TPFLAIFFPLFFGM--MLGDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLKILIYLGISTIIWGL--LTGSFFGFSL 418 (646)
T ss_pred ccHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH--HHHhHhcCcc
Confidence 45567777777764 34555555444432211111 11 1 2224555678888888887 4799999763
No 65
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=39.61 E-value=4e+02 Score=26.60 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=35.1
Q ss_pred hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc----HHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 192 RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH----IEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 192 ~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~----ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
.++.++.|..-|+-=++ ++|.++..+-..++ .|.++.+...+.-+++..+++|+.+.
T Consensus 37 ~~~~V~~G~~~gl~~s~---~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~ 97 (283)
T TIGR00145 37 LRGWVWVGVLAGFAACL---AIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRM 97 (283)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766654332 44555544433332 34566677778888888899999854
No 66
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=38.30 E-value=4.3e+02 Score=26.63 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCccccccccccCCcccccccccchhH
Q 016720 211 VIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSVYEALDNPAVGKKKIGFATF 290 (384)
Q Consensus 211 vlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~h~h~~~~~~~k~~~~~s~f 290 (384)
.+++.++.+++++ +..+++++.+.|+-++.+|+..+.+....-.+. +...+ ..+ .-.++++..+
T Consensus 111 ~~~~g~~~~~~~~---~~~~~~G~~l~G~gllf~gl~~m~~~~~pl~~~----~~~~~--~~~-------~l~~~~~~~~ 174 (307)
T TIGR00704 111 LIIGGVLFFLGRQ---SRAGQLGRSGIGLGLIFLALELISQLVTPLTQA----NGVQV--IFA-------SLTGSILLDL 174 (307)
T ss_pred HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----hhHHH--HHH-------HhccCcHHHH
Confidence 3344444444433 367899999999999999999887642210000 00000 000 0112345566
Q ss_pred HHHHhhcc--chH-HHHHHH-HHhhcC--ChHHHHHHHHHHHHHHHHH
Q 016720 291 ATGIVHGL--QPD-ALMMVL-PALALP--SRLAGAAFLIMFLLGTVVA 332 (384)
Q Consensus 291 ~iGilhGL--~P~-glLaLL-~Alal~--s~~~g~~yml~FglGTila 332 (384)
.+|.+.-. +-+ +..++. +..+.+ +...++..++.-.+||...
T Consensus 175 l~G~~lT~ivQSSsA~i~i~~~la~~G~i~~~~a~~lvlGaNiGT~~t 222 (307)
T TIGR00704 175 LIGAVLTIISHSSSAAVLITATLTAAGIIGFPVALCLVLGSNLGSGIL 222 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhcchhHHHH
Confidence 66655443 222 333232 222222 3456777777778888654
No 67
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=35.73 E-value=90 Score=27.29 Aligned_cols=45 Identities=18% Similarity=0.120 Sum_probs=33.2
Q ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhH
Q 016720 196 AAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIK 250 (384)
Q Consensus 196 ~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~ 250 (384)
..-=+..-.||.+-|+.+|.+.... .|..+++|+.++.+|+..+.
T Consensus 60 ~~~FL~~~~GRGlfyif~G~l~~~~----------~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 60 YFGFLYSYIGRGLFYIFLGTLCLGQ----------SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred hHhHHHhHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHH
Confidence 3334455789999999999877532 67777888888888877663
No 68
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=35.37 E-value=4.6e+02 Score=26.09 Aligned_cols=57 Identities=9% Similarity=-0.125 Sum_probs=32.8
Q ss_pred hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhc-------HHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 192 RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLH-------IEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 192 ~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~-------ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
..+.++.|...++-=++.+.. ++..+...++ -|.++.....+.-+++..+..|+.+.
T Consensus 34 ~~~~V~~G~~~g~~~s~~~~~---~~~~~~~~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~ 97 (306)
T PF03239_consen 34 LRRWVWLGVAAGLVASLVIGA---VFAVIFYTLSGDYWGISEELFEGAISLIAVALITWMVFWMRRH 97 (306)
T ss_pred chheeeecHhHHHHHHHHHHH---HHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777654444333 3333322222 24555556666677788888888864
No 69
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=33.88 E-value=1.9e+02 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016720 353 RITEKLTWASSLVAIALGFAIL 374 (384)
Q Consensus 353 ~l~~~L~~~s~~vsI~lGll~I 374 (384)
.-.++...+.+++.+++|+.++
T Consensus 50 ~~~~~~~l~~gi~~i~~Gi~~l 71 (72)
T PF03729_consen 50 SKGWWWSLLSGILSIVLGIILL 71 (72)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999875
No 70
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=33.46 E-value=51 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.561 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHH----hhhhc-HHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 208 AGQVIFGLLFLLL----KDRLH-IEVIRTWGTRVVGMTLLVIGAMGI 249 (384)
Q Consensus 208 ~tvvlLGll~~ll----g~~l~-ie~lq~w~eivvGvlLIvLGl~~L 249 (384)
++..++|++-+.. +..++ ++.+..| ++++|+-++++|+.+-
T Consensus 38 ~glm~~GllWlvvyYl~~~~~P~m~~lG~W-N~~IGFg~~i~G~lmt 83 (87)
T PRK00159 38 LGLMLIGLAWLVVNYLAGPAIPWMADLGPW-NYAIGFALMITGLLMT 83 (87)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccCch-hHHHHHHHHHHHHHHh
Confidence 3445566554332 45666 4677777 7899999998888664
No 71
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=33.31 E-value=1.1e+02 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 016720 327 LGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALG 370 (384)
Q Consensus 327 lGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lG 370 (384)
+|+..++.+.+.+.-..-+.+.++.| .++++++++.+.+++|
T Consensus 37 ~G~~~al~~~~~lav~~G~~l~~~ip--~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 37 AGATLALALATGLAVLLGSWLASRIP--ERYIKWVAGALFLLFG 78 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHC
Confidence 34444444444433333333333443 5678888888777665
No 72
>PLN02673 quinolinate synthetase A
Probab=32.49 E-value=82 Score=35.36 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCCCCCcccccccCCccccCCCCCCCcccccccccc--ccccccccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 016720 8 SSPTHFTKTHLKFSPFRSRLSPIDSPKLAFFCSLRS--ESKRVGSVSCKYENPSHFSHPSSSELNDSRSLTPHRVDSPNE 85 (384)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
+|+...+|+.+-|+|. |+.+....+|++.++. .+.-..|+.|.+..| +.+.|+...+-.+.. ...++++.
T Consensus 6 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~---~~~~~~~~ 77 (724)
T PLN02673 6 TSSSSSSFLSLLPNPS----PNFRTTHPNFGSQRRIGTINPLFKSFKCIQSPP-PDSAPSNASPFSCSA---VAFSPSQT 77 (724)
T ss_pred ccccccceeeecCCCC----CCccccCCCcccccccCCCcchhceeeeecCCC-CCCCCCCCCccceee---eecCCCcc
Confidence 3445556777777662 2333344555554443 344557889987632 222221111111111 00112222
Q ss_pred CCCCchhhhhhhhcccCCcc
Q 016720 86 SMPSSNFLKQIAKRTTGGKK 105 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ 105 (384)
+.+-|.-+++|.+.....+.
T Consensus 78 ~e~lP~kl~eIveeF~~l~d 97 (724)
T PLN02673 78 TELVPCKLQRLIKEFKSLTE 97 (724)
T ss_pred cccCCHHHHHHHHHHHhCCC
Confidence 33446668888876655544
No 73
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=31.63 E-value=67 Score=26.74 Aligned_cols=41 Identities=22% Similarity=0.599 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH----hhh-hcHHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 208 AGQVIFGLLFLLL----KDR-LHIEVIRTWGTRVVGMTLLVIGAMGI 249 (384)
Q Consensus 208 ~tvvlLGll~~ll----g~~-l~ie~lq~w~eivvGvlLIvLGl~~L 249 (384)
++..++|++-+.. +.. .+++.+..| ++++|+-+++.|+.+.
T Consensus 38 ~~lmllGL~WiVvyYi~~~~i~pi~~lG~W-N~~IGfg~~~~Gf~mt 83 (87)
T PF06781_consen 38 LGLMLLGLLWIVVYYISGGQIPPIPDLGNW-NLAIGFGLMIVGFLMT 83 (87)
T ss_pred HHHHHHHHHHHhhhhcccCCCCCcccccch-HHHHHHHHHHHHHHHH
Confidence 3445666655433 333 456677777 7899999998888665
No 74
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=31.51 E-value=5.9e+02 Score=29.32 Aligned_cols=63 Identities=21% Similarity=0.016 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCchhhhhhhccCCch-hHHHHHhHHhhhhHHHHHHHHHHHHHH
Q 016720 157 ELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTR-MESAAVGALWGCGHDAGQVIFGLLFLL 219 (384)
Q Consensus 157 ~lls~~~~gflLG~lHaL~gPDHLAAi~~Ls~~r~~-~~a~~lGl~wglGHs~tvvlLGll~~l 219 (384)
+.+.++..-++.|..-++..|--.+.+..+..++++ .-..+....+++|=.++..+-|.++..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~ 170 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS 170 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566677777766545555555555443322 233345566666666666666665543
No 75
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=29.81 E-value=4.6e+02 Score=24.32 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q 016720 230 RTWGTRVVGMTLLVIGAMGIKEA 252 (384)
Q Consensus 230 q~w~eivvGvlLIvLGl~~L~~~ 252 (384)
..|...+-|+.|+.++.-.+++.
T Consensus 59 ~~~i~~igG~~Ll~~a~k~~~~~ 81 (183)
T PF03741_consen 59 FPWILLIGGLFLLYIAIKLLHEE 81 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 48889999999999999887654
No 76
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=29.80 E-value=2e+02 Score=26.30 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcCC
Q 016720 231 TWGTRVVGMTLLVIGAMGIKEASEVP 256 (384)
Q Consensus 231 ~w~eivvGvlLIvLGl~~L~~~~~~~ 256 (384)
.+..++.+++|+++++..+++..+..
T Consensus 32 ~~~~~~a~i~l~ilai~q~~~~~~~~ 57 (182)
T PF09323_consen 32 IPLLYFAAILLLILAIVQLWRWFRPK 57 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34457888999999998888765543
No 77
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=29.42 E-value=6.5e+02 Score=25.97 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 016720 228 VIRTWGTRVVGMTLLVIGAMGIKEASE 254 (384)
Q Consensus 228 ~lq~w~eivvGvlLIvLGl~~L~~~~~ 254 (384)
.+..|.+.+.+.++.++|++++.+-..
T Consensus 177 ~l~~~~~~a~~~i~~~iG~yll~kGfg 203 (344)
T PF04123_consen 177 ALLGYPAYALGIILLLIGLYLLYKGFG 203 (344)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHhcC
Confidence 445667788899999999999976544
No 78
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=29.37 E-value=4.8e+02 Score=24.42 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016720 319 AAFLIMFLLGTVVAMG 334 (384)
Q Consensus 319 ~~yml~FglGTilaM~ 334 (384)
..+...++++.+++..
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (365)
T TIGR00900 250 GWVLAAFGLGALLGAL 265 (365)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444333
No 79
>COG1971 Predicted membrane protein [Function unknown]
Probab=26.99 E-value=4.4e+02 Score=25.01 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 317 AGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQF 378 (384)
Q Consensus 317 ~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~ 378 (384)
..+..-+.|++...++|+ ++...+.... +-+..+-+|+...+.+.+|+.+|++.+
T Consensus 35 ~~L~ia~~fG~f~~i~pl-iG~~~g~~~s------~~i~~~~~wigf~lL~~lG~~mI~e~f 89 (190)
T COG1971 35 EALVIALIFGVFQAIMPL-IGWFIGKFLS------TFIAEWAHWIGFVLLIILGLKMIIEGF 89 (190)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445567776666544 4555554443 134567778889999999999998864
No 80
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=23.39 E-value=6.1e+02 Score=24.95 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=30.4
Q ss_pred hhHHHHHhhccc--hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 288 ATFATGIVHGLQ--PDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVF 339 (384)
Q Consensus 288 s~f~iGilhGL~--P~glLaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l 339 (384)
.+...|+++|.. |-.|+-==.-.--+....++-|++.|..|..++=.++=.+
T Consensus 187 LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~ 240 (254)
T PF07857_consen 187 LAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVI 240 (254)
T ss_pred HHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHH
Confidence 467889999984 6555421110000112368899999999976655544333
No 81
>PRK09304 arginine exporter protein; Provisional
Probab=23.38 E-value=5.9e+02 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 324 MFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI 375 (384)
Q Consensus 324 ~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il 375 (384)
...+|...+...+..+...+...+-+..|.+...++.+.+.+.+-+|.-.+-
T Consensus 38 ~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 38 MIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555567888899999999988889887653
No 82
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.23 E-value=1.4e+02 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 016720 355 TEKLTWASSLVAIALGFAILISQFFGYSLY 384 (384)
Q Consensus 355 ~~~L~~~s~~vsI~lGll~Ilr~~~g~~~~ 384 (384)
..+..++.+.++.++|+.++++ .+.++.|
T Consensus 41 ~~~~wRalSii~FIlG~vl~lG-ilifs~y 69 (91)
T PHA02680 41 TDYVWRALSVTCFIVGAVLLLG-LFVFSMY 69 (91)
T ss_pred cchhHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3566678888999999999887 6666543
No 83
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=22.78 E-value=6.2e+02 Score=23.45 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcHHHHHHH-HHHHHHHHHHHHHHH
Q 016720 202 WGCGHDAGQVIFGLLFLLLKDRLHIEVIRTW-GTRVVGMTLLVIGAM 247 (384)
Q Consensus 202 wglGHs~tvvlLGll~~llg~~l~ie~lq~w-~eivvGvlLIvLGl~ 247 (384)
|..|=.++..++-.....+++.+. ...++ ..+++|..+..+|++
T Consensus 135 y~~G~~~at~~l~~~g~~~~~~~~--~~~~~~~~r~~G~~ia~~G~~ 179 (180)
T PF04955_consen 135 YAAGFVLATALLHAAGLALGRLLR--RRWAARAVRAAGGAIAAAGLM 179 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHh
Confidence 777777777777777777776653 44444 778899999999875
No 84
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=22.02 E-value=6.3e+02 Score=25.11 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=46.6
Q ss_pred chhHHHHHhhccchHHH----HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHH
Q 016720 287 FATFATGIVHGLQPDAL----MMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWAS 362 (384)
Q Consensus 287 ~s~f~iGilhGL~P~gl----LaLL~Alal~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s 362 (384)
.....+|+..|+.+|=+ +.++.-...+....|.+.-..+++....+-..++.+...+..++++|.+..+.-...+.
T Consensus 19 la~~li~~~~~~lG~flvlRr~sl~gdalsHa~L~Gval~~ll~~~~~~~a~~~~l~~a~~i~~l~~~~~~~~D~aigiv 98 (274)
T COG1108 19 LASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFLLGINPLLGAFIFGLLAALLIGYLRRRSKLKEDTAIGIV 98 (274)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 35667777777765421 13333333333444555555555554444555555555555556555544444555555
Q ss_pred HHHHHHHHHHHHH
Q 016720 363 SLVAIALGFAILI 375 (384)
Q Consensus 363 ~~vsI~lGll~Il 375 (384)
-.....+|+.++.
T Consensus 99 ~s~~~alGlvl~s 111 (274)
T COG1108 99 FSSGLALGLVLLS 111 (274)
T ss_pred HHHHHHHHHHHHh
Confidence 5556666666554
No 85
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=21.83 E-value=5e+02 Score=22.01 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 016720 322 LIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQFFGYSL 383 (384)
Q Consensus 322 ml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~~g~~~ 383 (384)
.+.|-++|.+.|.++..+.+. +++...+.-.+.+...++++....++..+
T Consensus 91 ~lGf~~at~~~~~~~~~~~g~------------r~~~~~~~~s~~~~~~i~~~F~~~L~v~l 140 (141)
T PF07331_consen 91 YLGFIIATFLFLFAFMLLLGE------------RRWLRLLLISVVFAAVIYFVFAKLLGVPL 140 (141)
T ss_pred HhhHHHHHHHHHHHHHHHhCC------------CcHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344556665555555444441 23333334445566777788887777643
No 86
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=21.48 E-value=1.2e+02 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016720 229 IRTWGTRVVGMTLLVIGAMGI 249 (384)
Q Consensus 229 lq~w~eivvGvlLIvLGl~~L 249 (384)
.+.|....+++.+..+|+|++
T Consensus 3 ~~~~~~f~i~~~~~~iGl~~~ 23 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLWNA 23 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999876
No 87
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=21.23 E-value=1.8e+02 Score=21.63 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 210 QVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 210 vvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
.+.+|++.++..+ .-+.+|..-..++|..|++.|....++
T Consensus 6 Li~iglv~l~~r~--~~~~i~~lP~~~~Gi~Lii~g~v~r~~ 45 (49)
T PF11384_consen 6 LILIGLVALFSRN--GSDRIQALPAILIGIGLIISGGVGRRR 45 (49)
T ss_pred HHHHHHHHHHhcC--CccchhccHHHHHhHHHHhhhhhhhhh
Confidence 4566664444322 235778888889999999988876643
No 88
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.90 E-value=3.3e+02 Score=20.38 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016720 316 LAGAAFLIMFLLGTVVAMGSYTV 338 (384)
Q Consensus 316 ~~g~~yml~FglGTilaM~~vt~ 338 (384)
-.+++.+++|.+|.+++......
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLP 41 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888899998776654433
No 89
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.84 E-value=6.6e+02 Score=24.90 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 318 GAAFLIMFLLGTVVAMGSYTVFIGS 342 (384)
Q Consensus 318 g~~yml~FglGTilaM~~vt~l~g~ 342 (384)
-+-++..|..|.++...++..++..
T Consensus 85 r~E~l~al~~~~~l~~~~~~i~~ea 109 (312)
T PRK03557 85 RLTTLAAFVNAIALVVITILIVWEA 109 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777766655554444443
No 90
>PRK09848 glucuronide transporter; Provisional
Probab=20.59 E-value=8.8e+02 Score=24.40 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=10.9
Q ss_pred HhhhhcCCCCCchhhhhhhccC
Q 016720 168 AGCLHTLSGPDHLAALAPLSIG 189 (384)
Q Consensus 168 LG~lHaL~gPDHLAAi~~Ls~~ 189 (384)
.+...++..+-+.+....++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~ 140 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQ 140 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCC
Confidence 3444444445555554555544
No 91
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=20.53 E-value=1.1e+02 Score=30.56 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 016720 359 TWASSLVAIALGF 371 (384)
Q Consensus 359 ~~~s~~vsI~lGl 371 (384)
+.+|+.+.+++|+
T Consensus 80 t~VS~~FL~~ig~ 92 (280)
T TIGR00802 80 TLVSALFLLIIAL 92 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555555
No 92
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=20.32 E-value=3.3e+02 Score=27.45 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=43.3
Q ss_pred hhhhhhhccCCchhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 016720 180 LAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVP 256 (384)
Q Consensus 180 LAAi~~Ls~~r~~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~ 256 (384)
+||++++-.. +..++.|.+-++ +++-++-..+|+..+.-..+.|..++.+++.++.|++++++.++.+
T Consensus 88 iAAlmAmr~~---R~~Vf~Ga~~AL------~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~ 155 (294)
T KOG2881|consen 88 IAALMAMRYP---RLTVFSGAMSAL------ALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMS 155 (294)
T ss_pred HHHHHHhhcc---chhHHHHHHHHH------HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 6777766543 344555554433 3333334444444432345677789999999999999999987765
No 93
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.01 E-value=5.1e+02 Score=24.39 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016720 332 AMGSYTVFIGSCSQALKDRIPRITE-KLTWASSLVAIALGFAILISQF 378 (384)
Q Consensus 332 aM~~vt~l~g~~~~~l~~r~~~l~~-~L~~~s~~vsI~lGll~Ilr~~ 378 (384)
.|...+...+..... .+.+ +-+++.+.+.+++|+.++++.+
T Consensus 42 ~~~~lg~~~G~~~~~------~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 42 LFIFISMLLGKFLAK------FLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHH------HhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355556555554431 2223 5678889999999999998764
Done!