Query 016720
Match_columns 384
No_of_seqs 148 out of 399
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 18:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 46.1 22 0.00076 30.2 4.6 28 217-251 76-103 (137)
2 3o7q_A L-fucose-proton symport 34.9 2.7E+02 0.0093 25.6 12.4 25 314-338 293-317 (438)
3 3b5d_A Multidrug transporter E 24.3 1.5E+02 0.005 23.7 5.9 28 217-251 76-103 (110)
4 3d31_C Sulfate/molybdate ABC t 20.5 2.2E+02 0.0074 26.0 7.0 62 316-377 81-145 (295)
5 2l8s_A Integrin alpha-1; trans 19.4 1.5E+02 0.0052 21.6 4.4 20 232-251 13-32 (54)
6 1pw4_A Glycerol-3-phosphate tr 16.1 6.3E+02 0.021 23.1 14.1 24 316-339 288-311 (451)
7 2i68_A Protein EMRE; transmemb 13.4 3E+02 0.01 23.1 5.5 54 311-376 50-103 (137)
8 2l9u_A Receptor tyrosine-prote 7.3 3.3E+02 0.011 18.3 2.7 18 234-251 11-30 (40)
9 1ifp_A PF3 inovirus, major coa 7.2 4.2E+02 0.014 17.9 3.2 21 359-379 24-44 (44)
10 3b5d_A Multidrug transporter E 6.6 8.8E+02 0.03 18.9 5.7 49 315-375 54-102 (110)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=46.13 E-value=22 Score=30.22 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=16.0
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 217 FLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 217 ~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
..++||+++ ..+ .+|+.+|++|++.+..
T Consensus 76 ~l~lgE~ls---~~~----~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 76 WGFFGQRLD---LPA----IIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHC---------C----HHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCC---HHH----HHHHHHHHHHHHHHhc
Confidence 356688775 223 4588889889888854
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=34.86 E-value=2.7e+02 Score=25.58 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 314 SRLAGAAFLIMFLLGTVVAMGSYTV 338 (384)
Q Consensus 314 s~~~g~~yml~FglGTilaM~~vt~ 338 (384)
+......+...+.++.+++....+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666665554444333
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=24.25 E-value=1.5e+02 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=19.8
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 016720 217 FLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 217 ~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~ 251 (384)
..++||+++. .+ ..|+.+|+.|+..+..
T Consensus 76 ~~~~~E~~s~---~~----~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 76 WGFFGQRLDL---PA----IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHhCCCCCH---HH----HHHHHHHHHHHHHHhc
Confidence 4567888752 33 4589999999888753
No 4
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=20.48 E-value=2.2e+02 Score=26.00 Aligned_cols=62 Identities=3% Similarity=-0.082 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 016720 316 LAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRI---TEKLTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 316 ~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l---~~~L~~~s~~vsI~lGll~Ilr~ 377 (384)
+.++..-+.+++.+++.-..++...++...+.+.+..+. --.+....+.+++++...+++..
T Consensus 81 ~~~l~nTl~~~~~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v~~~~~~~~~~~ 145 (295)
T 3d31_C 81 ISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGS 145 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444455555555555555666665554332222222 22345556667777777666654
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=19.40 E-value=1.5e+02 Score=21.58 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 016720 232 WGTRVVGMTLLVIGAMGIKE 251 (384)
Q Consensus 232 w~eivvGvlLIvLGl~~L~~ 251 (384)
..+.+.|++++.+-++.+++
T Consensus 13 i~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567788887776666654
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=16.07 E-value=6.3e+02 Score=23.08 Aligned_cols=24 Identities=0% Similarity=-0.153 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 316 LAGAAFLIMFLLGTVVAMGSYTVF 339 (384)
Q Consensus 316 ~~g~~yml~FglGTilaM~~vt~l 339 (384)
.....+...++++.+++....+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666655554443
No 7
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=13.38 E-value=3e+02 Score=23.08 Aligned_cols=54 Identities=22% Similarity=0.160 Sum_probs=27.8
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 311 ALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILIS 376 (384)
Q Consensus 311 al~s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr 376 (384)
++.....+.+|.+.-++|.+.++..-.++++... -...+.++..++.|++.+-+
T Consensus 50 alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l------------s~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 50 TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL------------DLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHC-----CHHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC------------CHHHHHHHHHHHHHHHHHhc
Confidence 3344446777777667776665544334433311 22346788888889887643
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=7.28 E-value=3.3e+02 Score=18.27 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=7.8
Q ss_pred HHHHHHHHH--HHHHHHhHh
Q 016720 234 TRVVGMTLL--VIGAMGIKE 251 (384)
Q Consensus 234 eivvGvlLI--vLGl~~L~~ 251 (384)
+.++|+..| .+|-..++.
T Consensus 11 t~i~gl~vif~~lg~tflyw 30 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEE
Confidence 344554433 344444443
No 9
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=7.20 E-value=4.2e+02 Score=17.91 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 016720 359 TWASSLVAIALGFAILISQFF 379 (384)
Q Consensus 359 ~~~s~~vsI~lGll~Ilr~~~ 379 (384)
..+.-+.++++|+-||-.|+|
T Consensus 24 gaiivlaavvlgirwikaqff 44 (44)
T 1ifp_A 24 GAIIVLAAVVLGIRWIKAQFF 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHhHHhHhhcC
Confidence 445556678899999888765
No 10
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=6.64 E-value=8.8e+02 Score=18.92 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 315 RLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILI 375 (384)
Q Consensus 315 ~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Il 375 (384)
.-.+.+|.+.=++|.+.....-..+++ |+.. ..++.++..++.|+..+-
T Consensus 54 ~p~s~ay~i~~g~~~v~~~l~~~~~~~-------E~~s-----~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 54 IPTGIAYAIWSGVGIVLISLLSWGFFG-------QRLD-----LPAIIGMMLICAGVLIIN 102 (110)
T ss_pred CChhhHHHHHhhHHHHHHHHHHHHHhC-------CCCC-----HHHHHHHHHHHHHHHHHh
Confidence 345788887667776665444333333 2221 234668888888887764
Done!