Query 016720
Match_columns 384
No_of_seqs 148 out of 399
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 18:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 23.3 2E+02 0.014 24.0 13.3 25 315-339 284-308 (447)
2 d1q90m_ f.23.25.1 (M:) PetM su 10.6 1E+02 0.0074 18.5 2.8 20 325-344 4-26 (34)
3 d2a65a1 f.54.1.1 (A:5-513) Na( 6.4 4E+02 0.029 24.1 6.6 54 314-371 334-387 (509)
4 d2r6gf2 f.58.1.1 (F:261-504) M 5.4 4.1E+02 0.03 21.2 5.5 8 324-331 26-33 (244)
5 d1oeda_ f.36.1.1 (A:) Acetylch 4.9 6.5E+02 0.047 19.6 6.5 10 289-298 34-43 (227)
6 d1jb0l_ f.31.1.1 (L:) Photosys 4.5 7.5E+02 0.055 19.4 8.8 94 192-303 37-130 (151)
7 d1oedc_ f.36.1.1 (C:) Acetylch 4.2 7.5E+02 0.055 19.3 6.5 11 317-327 64-74 (260)
8 d1oedb_ f.36.1.1 (B:) Acetylch 3.5 6.7E+02 0.049 19.6 5.4 56 323-378 33-88 (250)
9 d2axtf1 f.23.38.1 (F:11-45) Cy 3.3 4.3E+02 0.031 15.8 2.8 16 318-333 15-30 (35)
10 d3d31c1 f.58.1.1 (C:13-260) Su 2.7 8.1E+02 0.059 18.9 5.0 64 314-377 44-110 (248)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=23.29 E-value=2e+02 Score=24.01 Aligned_cols=25 Identities=0% Similarity=-0.176 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016720 315 RLAGAAFLIMFLLGTVVAMGSYTVF 339 (384)
Q Consensus 315 ~~~g~~yml~FglGTilaM~~vt~l 339 (384)
......+...+.++.+++....+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 284 LDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcchhhhhhhhhhhhhh
Confidence 4455556666666655555544443
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.56 E-value=1e+02 Score=18.54 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH---HHHHHhh
Q 016720 325 FLLGTVVAMGSYT---VFIGSCS 344 (384)
Q Consensus 325 FglGTilaM~~vt---~l~g~~~ 344 (384)
|-.||.+.|..++ +..++..
T Consensus 4 fiagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhh
Confidence 5566666665554 4444433
No 3
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.36 E-value=4e+02 Score=24.06 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 016720 314 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGF 371 (384)
Q Consensus 314 s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGl 371 (384)
+.+..+.|+.+|.+|..-....+-..... +.++.++.|++...+..++..+++.
T Consensus 334 ~~~~~lFF~~l~~~gl~s~i~~~e~~v~~----l~d~~~~~r~~~~~~~~~~~~~~~~ 387 (509)
T d2a65a1 334 TFLGFLWFFLLFFAGLTSSIAIMQPMIAF----LEDELKLSRKHAVLWTAAIVFFSAH 387 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccchhHH----HHHhcCCchhhhhhheeEEEEhhhh
Confidence 44566666666666644433333333332 3333344455544444444444443
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.42 E-value=4.1e+02 Score=21.17 Aligned_cols=8 Identities=50% Similarity=0.501 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016720 324 MFLLGTVV 331 (384)
Q Consensus 324 ~FglGTil 331 (384)
.+++.+++
T Consensus 26 ~~~~~~~~ 33 (244)
T d2r6gf2 26 VFSLITVF 33 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.87 E-value=6.5e+02 Score=19.57 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=3.9
Q ss_pred hHHHHHhhcc
Q 016720 289 TFATGIVHGL 298 (384)
Q Consensus 289 ~f~iGilhGL 298 (384)
.+++-.+-++
T Consensus 34 ~l~it~lL~~ 43 (227)
T d1oeda_ 34 TLSISVLLSL 43 (227)
T ss_dssp HHHHHHHHHH
T ss_pred EeeHHHHHHH
Confidence 3444443333
No 6
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=4.54 E-value=7.5e+02 Score=19.35 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=47.8
Q ss_pred hhHHHHHhHHhhhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcccccCCcccccc
Q 016720 192 RMESAAVGALWGCGHDAGQVIFGLLFLLLKDRLHIEVIRTWGTRVVGMTLLVIGAMGIKEASEVPTPCVALENGECDVSV 271 (384)
Q Consensus 192 ~~~a~~lGl~wglGHs~tvvlLGll~~llg~~l~ie~lq~w~eivvGvlLIvLGl~~L~~~~~~~~~~~~~~~g~~~~h~ 271 (384)
.....+.|+=-|+.| +|+++|=...+---|-.......-+--.+|+++|.-....++......++.
T Consensus 37 GlSp~~RGLEiGmAH--GYfL~GPF~~lGPLRnt~~a~~aGllsaiglv~Ilt~~L~lYg~~sf~~~~------------ 102 (151)
T d1jb0l_ 37 GLSPILRGLEVGMAH--GYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGG------------ 102 (151)
T ss_dssp TCCHHHHHHHHHHHH--HHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC------------
T ss_pred cCChhhhhhHHhhhc--eeeeechhhhhcCCcCchHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC------------
Confidence 345667787777777 577776554432222110111111223456666665444554332221110
Q ss_pred ccccCCcccccccccchhHHHHHhhccchHHH
Q 016720 272 YEALDNPAVGKKKIGFATFATGIVHGLQPDAL 303 (384)
Q Consensus 272 h~h~~~~~~~k~~~~~s~f~iGilhGL~P~gl 303 (384)
..++..+.+.+|+-|.-|+.-|-.+.+.
T Consensus 103 ----~~~d~l~t~~gWs~F~~GF~~Gg~GGa~ 130 (151)
T d1jb0l_ 103 ----SSSDPLKTSEGWSQFTAGFFVGAMGSAF 130 (151)
T ss_dssp ----CSSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCcccccCcccHHHhhchhhhccccHHH
Confidence 0112344556799999998887655543
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.25 E-value=7.5e+02 Score=19.28 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 016720 317 AGAAFLIMFLL 327 (384)
Q Consensus 317 ~g~~yml~Fgl 327 (384)
-+..|++.+.+
T Consensus 64 i~~y~~~~~~~ 74 (260)
T d1oedc_ 64 IGKYLMFIMSL 74 (260)
T ss_dssp CTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.47 E-value=6.7e+02 Score=19.63 Aligned_cols=56 Identities=13% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016720 323 IMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEKLTWASSLVAIALGFAILISQF 378 (384)
Q Consensus 323 l~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~L~~~s~~vsI~lGll~Ilr~~ 378 (384)
+.+++.++++|..+......-.-...+..|-+..++......+.+.+=...++..+
T Consensus 33 ~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~~~~~v~~~ 88 (250)
T d1oedb_ 33 MSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNL 88 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHHHHHhheee
No 9
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.35 E-value=4.3e+02 Score=15.83 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 016720 318 GAAFLIMFLLGTVVAM 333 (384)
Q Consensus 318 g~~yml~FglGTilaM 333 (384)
++...-+|-+|.+.+|
T Consensus 15 ~l~vptvfFlGai~aM 30 (35)
T d2axtf1 15 TLAVPTIFFLGAIAAM 30 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hcccchhhhHhHHHHH
No 10
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=2.73 E-value=8.1e+02 Score=18.91 Aligned_cols=64 Identities=6% Similarity=-0.045 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 016720 314 SRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSQALKDRIPRITEK---LTWASSLVAIALGFAILISQ 377 (384)
Q Consensus 314 s~~~g~~yml~FglGTilaM~~vt~l~g~~~~~l~~r~~~l~~~---L~~~s~~vsI~lGll~Ilr~ 377 (384)
+...++..-+.+++.+++.-..++...++...+.+.|..+.-+. ++...+.+...++...++.+
T Consensus 44 ~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~ 110 (248)
T d3d31c1 44 SVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGS 110 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcchhhhhhcccc
Done!