BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016721
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDQDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPAIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 160/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIART 274
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADAIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 159/280 (56%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSAH +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSAHSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAAT 274
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 159/280 (56%), Gaps = 14/280 (5%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQA---LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + L L P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQ 275
R + YPQ+S STTGSS+ + + + + S I W + AD I
Sbjct: 119 ERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHIL 178
Query: 276 KELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHT 333
KEL F +K EV+I FSA +P+S V + GDPY ++ + +M+RL+ N +
Sbjct: 179 KELDHFPLEKRSEVVILFSACSLPMSVVNR-GDPYPQEVSATVQKVMERLE---YCNPYR 234
Query: 334 LAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
L +QS+VGP+ WL P TDE + L ++G K++L +P+ +T
Sbjct: 235 LVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFT 274
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1L8X|B Chain B, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1LBQ|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
pdb|1LBQ|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
Length = 362
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 153/279 (54%), Gaps = 13/279 (4%)
Query: 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGY 159
G++L+N+GGP + + FL+ LFAD D+I + + Q +AK I+ R PK ++ Y
Sbjct: 8 TGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQY 64
Query: 160 AAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
IGGGSP+RK ++ QA + L+ + P YV RY P T E +Q+ +D +
Sbjct: 65 REIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVK 124
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
+ V YP FS STTGSSI L + + S+I W EG + + ++ I K
Sbjct: 125 KAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSVIDRWPTNEGLIKAFSENITK 184
Query: 277 ELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+L +F +P ++V++ FSAH +P+ V GD Y ++ +Y IMQ+LK N + L
Sbjct: 185 KLQEFPQPVRDKVVLLFSAHSLPMDVV-NTGDAYPAEVAATVYNIMQKLK---FKNPYRL 240
Query: 335 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYT 373
+QS+VGP WL T E+ LG K V L+ IP+ +T
Sbjct: 241 VWQSQVGPKPWLGAQTAEIAEFLGPK-VDGLMFIPIAFT 278
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 136/280 (48%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ +G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAMGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SAH +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 164 TYASMPEDERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAE---GAGV-SEYAV 218
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 219 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 258
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAFGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SAH +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 163 TYASMPEDERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGA---GV-SEYAV 217
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 218 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 257
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 1 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 42
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 43 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 102
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 103 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 159
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SAH +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 160 TYASMPEDERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAEGA---GV-SEYAV 214
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 215 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 254
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SAH +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 163 TYASMPEDERENAMLIVSAHSLPEK-IKEFGDPYPDQLHESAKLIAEGA---GV-SEYAV 217
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 218 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 257
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SAH +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 164 TYASMPEDERENAMLIVSAHSLPEK-IKEFGDPYPDQLHESAKLIAE---GAGV-SEYAV 218
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 219 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 258
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 134/280 (47%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+ + PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SAH +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 164 TYASMPEDERENAMLIVSAHSLP-EKIKEFGDPYPDQLHESAKLIAE---GAGV-SEYAV 218
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 219 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 258
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SA +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 163 TYASMPEDERENAMLIVSAASLP-EKIKEFGDPYPDQLHESAKLIAEGA---GV-SEYAV 217
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 218 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 257
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 107 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 163
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SA +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 164 TYASMPEDERENAMLIVSAASLP-EKIKEFGDPYPDQLHESAKLIAE---GAGV-SEYAV 218
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 219 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 258
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 32/280 (11%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
V + L P FS + S + + E L L ++ + SWY +V D +++
Sbjct: 106 EAVSIVLAPHFSTFSVQSYNKRAK---EEAEKLGGLTITSVESWYDEPKFVTYWVDRVKE 162
Query: 277 ELGKF--QKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTL 334
+ E M+ SA +P +++ GDPY DQ+ E LI + G+ +++ +
Sbjct: 163 TYASMPEDERENAMLIVSACSLP-EKIKEFGDPYPDQLHESAKLIAEGA---GV-SEYAV 217
Query: 335 AYQSRVG-PVKWLKPYTDEVLVEL-GQKGVKSLLAIPVRY 372
+QS P WL P ++ +L QKG ++ + +PV +
Sbjct: 218 GWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGF 257
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 126/281 (44%), Gaps = 34/281 (12%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + E
Sbjct: 4 KIGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPSPEMLEDL-----TER 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL IT EQA+ L+ L + ++Y+G+++ PF E+AV+++ D I
Sbjct: 46 YRAIGGISPLATITLEQAKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQ 105
Query: 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276
+ L L P +S + S + Q E L L + I SWY+ ++ D ++
Sbjct: 106 DAIALVLAPHYSTFSVKSYVGRAQ---EEAEKLGNLTIHGIDSWYKEPKFIQYWVDAVKS 162
Query: 277 ELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHT 333
E+ ++ SAH +P + GDPY DQ+ E I RG ++
Sbjct: 163 IYSGMSDAEREKAVLIVSAHSLPEKII-AMGDPYPDQLNETADYIA-----RGAEVANYA 216
Query: 334 LAYQSRVG-PVKWLKPYTDEVLVELGQK-GVKSLLAIPVRY 372
+ +QS P W+ P ++ EL +K G S + PV +
Sbjct: 217 VGWQSAGNTPDPWIGPDVQDLTRELNEKYGYTSFVYAPVGF 257
>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 910
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 265 GYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLK 324
GY AD++++ +GK +KPEE+ V EK G ++ I+ ++++
Sbjct: 699 GYTLGGADMLRRAMGK-KKPEEMA---KQRSVFAEGAEKNG--INAELAMKIFDLVEKFA 752
Query: 325 DRGINNDHTLAYQSRVGPVKWLKPY 349
G N H+ AY WLK +
Sbjct: 753 GYGFNKSHSAAYALVSYQTLWLKAH 777
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVTEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 136 VHRDLAAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 184
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 247 AVVSEEPIYIVTEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 302
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 303 VHRDLRAANILVGENLVCKVADFGLGRLIEDNEYT-ARQGAKFPIKWTAP 351
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVTEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 184
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 69 AVVSEEPIYIVTEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 124
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 125 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 173
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVTEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 184
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 71 AVVSEEPIYIVTEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 126
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 127 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 175
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 70 AVVSEEPIXIVTEYMSK----GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY 125
Query: 307 PYRDQMEECIYL---IMQRLKDRG----INNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G I ++ A Q P+KW P
Sbjct: 126 VHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAP 174
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVIEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRG----INNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G I ++ A Q P+KW P
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAP 184
>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
Length = 562
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 201 PFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW 260
P EAV R+ L ++ TG + +LQ ++ +L + I R+
Sbjct: 69 PLWNEAVDNTARNFTFLRDALQETAASDVNFTGKLLNMLQEVYLSGGPFQQLMLGIFRTD 128
Query: 261 YQREGYVNSM 270
Y REG + M
Sbjct: 129 YMREGVYDKM 138
>pdb|3U0H|A Chain A, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius.
pdb|3U0H|B Chain B, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Length = 281
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 88 EYESHAQAAED----KVGVLLLNLGGPDTLHDVQP-FLFNLFADPDIIRL-PRLFRFLQW 141
E E H AA + + G++L NLG P L+D +P FL L PD RL RL
Sbjct: 43 EAERHGDAAVEAXFQRRGLVLANLGLPLNLYDSEPVFLRELSLLPDRARLCARLG----- 97
Query: 142 PLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP 201
A+ ++ P E P+R I+ + + A+E LP+ VG+ Y P
Sbjct: 98 --ARSVTAFLWPSXDE--------EPVRYISQLARRIRQVAVEL--LPLGXRVGLEYVGP 145
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVCEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 184
>pdb|3EZN|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3EZN|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3FDZ|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
pdb|3GP3|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|C Chain C, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|D Chain D, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP5|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GP5|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GW8|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
pdb|3GW8|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
Length = 257
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 227 FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEE 286
F I+ T R ++ ++ + + V ++ SW E + +++ L + E E+
Sbjct: 58 FDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQ 117
Query: 287 VMIFFSAHGVPVSYVEKAGD--PYRD 310
V+++ ++ P +E + PY D
Sbjct: 118 VLVWRRSYDTPPPALEPGDERAPYAD 143
>pdb|3FDZ|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
Length = 257
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 227 FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEE 286
F I+ T R ++ ++ + + V ++ SW E + +++ L + E E+
Sbjct: 58 FDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQ 117
Query: 287 VMIFFSAHGVPVSYVEKAGD--PYRD 310
V+++ ++ P +E + PY D
Sbjct: 118 VLVWRRSYDTPPPALEPGDERAPYAD 143
>pdb|3LNT|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
pdb|3LNT|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
Length = 250
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 227 FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEE 286
F I+ T R ++ ++ + + V ++ SW E + +++ L + E E+
Sbjct: 51 FDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQ 110
Query: 287 VMIFFSAHGVPVSYVEKAGD--PYRD 310
V+++ ++ P +E + PY D
Sbjct: 111 VLVWRRSYDTPPPALEPGDERAPYAD 136
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 541 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 600
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 601 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 638
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVIEYMSK----GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 184
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 265 GYVNSMADLIQKEL--GKFQKPEEVMIF-----FSAHGVPVSYV---EKAG-------DP 307
G+V S AD Q +L G KP + F F G V EK G P
Sbjct: 37 GHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYDTP 96
Query: 308 YRDQMEECIYLIMQRLKDR---GINNDHTLAYQSRVGPVK 344
++ E+ +++ LKD+ +N HTL Y R+GP K
Sbjct: 97 FK--REKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEK 134
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 246 AVVSEEPIYIVTEYMSK----GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY 301
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 350
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 246 AVVSEEPIYIVTEYMSK----GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY 301
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 350
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 329 AVVSEEPIYIVTEYMSK----GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY 384
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 385 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 433
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 73 AVVSEEPIYIVTEYMSK----GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY 128
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 129 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 177
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 77 AVVSEEPIYIVTEYMNK----GSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNY 132
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 133 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 181
>pdb|3VKN|A Chain A, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKN|B Chain B, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKO|A Chain A, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
pdb|3VKO|B Chain B, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
Length = 153
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 265 GYVNSMADLIQKEL--GKFQKPEEVMIF-----FSAHGVPVSYV---EKAG-------DP 307
G+V S AD Q +L G KP + F F G V EK G P
Sbjct: 37 GHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYDTP 96
Query: 308 YRDQMEECIYLIMQRLKDR---GINNDHTLAYQSRVGPVK 344
++ E+ +++ LKD+ +N HTL Y R+GP K
Sbjct: 97 FK--REKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEK 134
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 246 AVVSEEPIYIVGEYMSK----GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY 301
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 302 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 350
>pdb|3AP4|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP5|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain
pdb|3AP6|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP7|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
Sialic Acid
pdb|3APB|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3APB|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3AP9|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With
Lacto-N-Fucopentaose Iii
Length = 154
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 313 EECIYLIMQRLKDR---GINNDHTLAYQSRVGPVK 344
E+ +++ LKD+ +N HTL Y R+GP K
Sbjct: 100 EKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEK 134
>pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 917
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 265 GYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLK 324
GY AD +++ GK +KPEE V EK G ++ I+ ++++
Sbjct: 699 GYTLGGADXLRRAXGK-KKPEEXA---KQRSVFAEGAEKNG--INAELAXKIFDLVEKFA 752
Query: 325 DRGINNDHTLAYQSRVGPVKWLKPY 349
G N H+ AY WLK +
Sbjct: 753 GYGFNKSHSAAYALVSYQTLWLKAH 777
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + S+ D ++ E GK+ + +++ + ++YVE+
Sbjct: 77 AVVSEEPIYIVTEYMNK----GSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNY 132
Query: 307 PYRDQMEECIYL---IMQRLKDRG----INNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G I ++ A Q P+KW P
Sbjct: 133 VHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAP 181
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 247 AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGD 306
A +S P+ I+ + + + D ++ E+GK+ + +++ + ++YVE+
Sbjct: 80 AVVSEEPIYIVTEYMSK----GCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY 135
Query: 307 PYRDQMEECIYL---IMQRLKDRGI-----NNDHTLAYQSRVGPVKWLKP 348
+RD I + ++ ++ D G+ +N++T A Q P+KW P
Sbjct: 136 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAP 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,012,018
Number of Sequences: 62578
Number of extensions: 447749
Number of successful extensions: 1223
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 53
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)