Query 016721
Match_columns 384
No_of_seqs 198 out of 1189
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 3.3E-83 7.2E-88 657.0 34.4 290 88-377 78-367 (485)
2 COG0276 HemH Protoheme ferro-l 100.0 1E-79 2.2E-84 602.8 30.0 270 96-377 2-272 (320)
3 PF00762 Ferrochelatase: Ferro 100.0 1.7E-78 3.6E-83 598.2 28.5 270 99-377 1-270 (316)
4 TIGR00109 hemH ferrochelatase. 100.0 2.8E-76 6E-81 583.7 30.7 274 96-377 2-275 (322)
5 KOG1321 Protoheme ferro-lyase 100.0 1.8E-76 3.8E-81 569.1 25.8 295 75-376 13-313 (395)
6 PRK12435 ferrochelatase; Provi 100.0 6.8E-71 1.5E-75 542.9 29.2 256 96-377 1-262 (311)
7 PRK00035 hemH ferrochelatase; 100.0 3E-70 6.6E-75 541.5 32.6 272 97-376 3-276 (333)
8 cd03411 Ferrochelatase_N Ferro 100.0 1.5E-44 3.2E-49 324.1 17.2 159 100-263 1-159 (159)
9 cd00419 Ferrochelatase_C Ferro 100.0 1.5E-28 3.4E-33 215.4 11.8 105 268-377 1-106 (135)
10 PF06180 CbiK: Cobalt chelatas 99.7 7E-16 1.5E-20 149.2 12.8 196 100-374 1-209 (262)
11 COG4822 CbiK Cobalamin biosynt 99.6 9.3E-14 2E-18 129.4 15.2 195 98-377 1-208 (265)
12 cd03409 Chelatase_Class_II Cla 99.2 9.2E-11 2E-15 96.2 11.3 74 166-244 13-88 (101)
13 PRK02395 hypothetical protein; 99.1 2.2E-09 4.7E-14 104.8 18.0 184 163-374 8-203 (279)
14 cd03409 Chelatase_Class_II Cla 98.8 4.3E-08 9.2E-13 80.3 8.9 72 289-377 2-73 (101)
15 cd03414 CbiX_SirB_C Sirohydroc 98.7 2E-07 4.3E-12 78.9 12.8 109 163-277 7-116 (117)
16 cd03412 CbiK_N Anaerobic cobal 98.7 1.9E-07 4.1E-12 81.2 12.4 120 100-276 1-125 (127)
17 PRK00923 sirohydrochlorin coba 98.6 2.4E-07 5.2E-12 79.8 9.8 109 163-277 8-126 (126)
18 PLN02757 sirohydrochlorine fer 98.5 1.2E-06 2.6E-11 78.8 12.4 113 163-281 20-135 (154)
19 cd03415 CbiX_CbiC Archaeal sir 98.5 3.3E-06 7.1E-11 73.5 12.6 108 163-276 7-124 (125)
20 PF01903 CbiX: CbiX; InterPro 98.2 2.5E-06 5.5E-11 70.6 5.9 90 177-272 13-105 (105)
21 PRK05782 bifunctional sirohydr 98.1 4.5E-05 9.7E-10 76.7 13.0 114 162-281 12-135 (335)
22 COG2138 Sirohydrochlorin ferro 98.1 8.9E-05 1.9E-09 71.6 14.0 187 163-377 9-196 (245)
23 cd03416 CbiX_SirB_N Sirohydroc 97.7 0.00026 5.5E-09 58.3 8.8 90 163-258 6-98 (101)
24 TIGR00109 hemH ferrochelatase. 97.7 0.00058 1.3E-08 68.3 12.9 107 164-278 205-321 (322)
25 PLN02449 ferrochelatase 97.6 0.0011 2.4E-08 69.6 14.0 114 164-280 294-415 (485)
26 PRK00035 hemH ferrochelatase; 97.6 0.0012 2.7E-08 65.8 13.6 110 165-279 207-324 (333)
27 cd03413 CbiK_C Anaerobic cobal 97.3 0.00082 1.8E-08 56.5 7.5 60 162-224 6-65 (103)
28 cd03413 CbiK_C Anaerobic cobal 97.2 0.0019 4E-08 54.4 8.5 69 288-376 2-70 (103)
29 PF00762 Ferrochelatase: Ferro 97.1 0.0023 5E-08 63.9 9.4 106 164-278 201-316 (316)
30 PRK02395 hypothetical protein; 97.0 0.0073 1.6E-07 59.1 11.8 112 163-282 142-264 (279)
31 PRK12435 ferrochelatase; Provi 96.7 0.029 6.2E-07 56.1 13.1 111 164-279 191-308 (311)
32 PRK00923 sirohydrochlorin coba 96.7 0.012 2.6E-07 50.5 8.9 69 288-373 3-71 (126)
33 cd03416 CbiX_SirB_N Sirohydroc 96.5 0.02 4.3E-07 47.0 9.0 71 289-377 2-72 (101)
34 cd03414 CbiX_SirB_C Sirohydroc 96.5 0.017 3.6E-07 48.7 8.6 72 288-377 2-73 (117)
35 PLN02757 sirohydrochlorine fer 96.5 0.016 3.6E-07 52.1 8.9 74 285-376 12-85 (154)
36 COG0276 HemH Protoheme ferro-l 96.4 0.054 1.2E-06 54.4 12.5 111 164-279 201-319 (320)
37 cd03412 CbiK_N Anaerobic cobal 96.3 0.025 5.4E-07 49.1 8.6 75 288-374 2-82 (127)
38 cd03415 CbiX_CbiC Archaeal sir 96.1 0.03 6.5E-07 48.8 8.3 70 288-376 2-71 (125)
39 cd00419 Ferrochelatase_C Ferro 96.0 0.088 1.9E-06 46.3 10.9 59 165-225 36-102 (135)
40 PF06180 CbiK: Cobalt chelatas 95.8 0.057 1.2E-06 52.8 9.3 105 163-279 148-262 (262)
41 PF01903 CbiX: CbiX; InterPro 94.6 0.055 1.2E-06 44.6 4.6 57 308-376 8-64 (105)
42 PRK05782 bifunctional sirohydr 93.7 0.28 6.1E-06 49.7 8.4 71 287-376 7-77 (335)
43 cd03411 Ferrochelatase_N Ferro 92.2 0.45 9.8E-06 42.7 6.7 60 305-371 63-122 (159)
44 COG2138 Sirohydrochlorin ferro 89.6 0.67 1.5E-05 44.9 5.6 71 288-376 4-74 (245)
45 KOG1321 Protoheme ferro-lyase 89.6 1.8 3.9E-05 43.6 8.6 112 164-281 244-363 (395)
46 COG4822 CbiK Cobalamin biosynt 88.5 6.8 0.00015 37.7 11.2 94 177-280 156-259 (265)
47 COG0621 MiaB 2-methylthioadeni 87.0 5.1 0.00011 42.1 10.5 142 206-371 181-335 (437)
48 COG1453 Predicted oxidoreducta 82.8 44 0.00096 34.6 14.6 75 171-246 31-106 (391)
49 cd01994 Alpha_ANH_like_IV This 82.3 42 0.00091 31.1 14.7 126 207-367 16-143 (194)
50 PF06309 Torsin: Torsin; Inte 69.8 20 0.00043 31.6 7.0 66 260-338 27-92 (127)
51 PRK10481 hypothetical protein; 69.5 42 0.00092 32.2 9.8 126 190-374 66-195 (224)
52 TIGR00640 acid_CoA_mut_C methy 68.9 30 0.00064 30.3 8.0 105 100-219 3-110 (132)
53 PF05990 DUF900: Alpha/beta hy 67.8 31 0.00067 32.8 8.6 87 269-370 3-100 (233)
54 COG2861 Uncharacterized protei 63.4 1.5E+02 0.0034 29.0 12.8 165 190-372 53-242 (250)
55 PF06925 MGDG_synth: Monogalac 63.1 28 0.00061 31.0 7.0 152 175-372 4-167 (169)
56 COG0761 lytB 4-Hydroxy-3-methy 62.9 12 0.00025 37.4 4.7 83 236-322 20-113 (294)
57 TIGR00290 MJ0570_dom MJ0570-re 62.3 1.5E+02 0.0032 28.4 13.6 13 262-274 69-81 (223)
58 PRK06886 hypothetical protein; 61.4 1.3E+02 0.0029 30.3 12.1 22 348-370 223-244 (329)
59 PF04748 Polysacc_deac_2: Dive 57.3 1.4E+02 0.0031 28.1 10.9 87 189-275 20-116 (213)
60 COG4750 LicC CTP:phosphocholin 52.7 12 0.00025 35.7 2.6 47 163-224 9-55 (231)
61 PRK09856 fructoselysine 3-epim 52.2 2.1E+02 0.0046 27.0 17.0 154 198-365 10-176 (275)
62 KOG1322 GDP-mannose pyrophosph 52.0 26 0.00057 35.7 5.2 94 163-282 18-111 (371)
63 cd02167 NMNAT_NadR Nicotinamid 45.0 2.3E+02 0.0049 25.3 9.8 85 206-295 18-109 (158)
64 PRK04147 N-acetylneuraminate l 42.8 1.6E+02 0.0034 28.8 9.1 53 189-245 73-128 (293)
65 cd06592 GH31_glucosidase_KIAA1 42.4 45 0.00098 32.9 5.2 62 315-376 31-98 (303)
66 PRK05628 coproporphyrinogen II 42.1 2.9E+02 0.0063 27.9 11.1 12 327-339 118-129 (375)
67 cd07948 DRE_TIM_HCS Saccharomy 40.6 3.5E+02 0.0076 26.3 16.4 107 200-323 71-183 (262)
68 cd03174 DRE_TIM_metallolyase D 38.9 3.3E+02 0.0072 25.5 16.7 103 204-323 77-188 (265)
69 COG4782 Uncharacterized protei 38.6 1.2E+02 0.0027 31.4 7.6 93 259-370 95-198 (377)
70 COG0406 phoE Broad specificity 38.3 3E+02 0.0066 24.8 11.4 53 165-222 26-81 (208)
71 PF02633 Creatininase: Creatin 38.3 84 0.0018 29.8 6.2 22 203-224 88-109 (237)
72 PF00701 DHDPS: Dihydrodipicol 38.1 2.7E+02 0.0058 27.0 9.8 54 187-244 68-124 (289)
73 PRK09426 methylmalonyl-CoA mut 38.1 1.3E+02 0.0028 33.7 8.4 110 96-219 579-690 (714)
74 PF11633 SUD-M: Single-strande 37.2 10 0.00022 33.7 -0.2 30 350-380 80-109 (142)
75 PRK03620 5-dehydro-4-deoxygluc 37.2 1.9E+02 0.0041 28.5 8.7 53 187-244 74-129 (303)
76 cd00408 DHDPS-like Dihydrodipi 37.1 2E+02 0.0044 27.5 8.8 53 188-244 65-120 (281)
77 TIGR00539 hemN_rel putative ox 35.5 3.9E+02 0.0084 26.9 10.8 38 327-365 110-153 (360)
78 PF13684 Dak1_2: Dihydroxyacet 35.2 60 0.0013 32.5 4.8 47 177-224 106-152 (313)
79 cd07940 DRE_TIM_IPMS 2-isoprop 34.5 4.3E+02 0.0092 25.4 17.8 110 197-323 69-185 (268)
80 COG2108 Uncharacterized conser 33.8 3.2E+02 0.0069 28.1 9.5 62 156-223 74-143 (353)
81 cd02072 Glm_B12_BD B12 binding 33.7 79 0.0017 27.7 4.8 84 125-219 26-113 (128)
82 PRK08599 coproporphyrinogen II 33.6 4.5E+02 0.0097 26.5 10.9 38 327-366 110-154 (377)
83 cd06335 PBP1_ABC_ligand_bindin 33.3 2.3E+02 0.0049 27.7 8.6 52 171-222 150-201 (347)
84 COG1856 Uncharacterized homolo 32.3 1.2E+02 0.0025 29.8 5.9 70 287-380 57-126 (275)
85 cd03174 DRE_TIM_metallolyase D 30.6 2.4E+02 0.0053 26.4 8.0 42 182-223 123-168 (265)
86 PF13204 DUF4038: Protein of u 30.6 2.6E+02 0.0057 27.5 8.4 87 203-298 90-189 (289)
87 TIGR00674 dapA dihydrodipicoli 30.3 3E+02 0.0064 26.7 8.7 52 189-244 67-121 (285)
88 smart00729 Elp3 Elongator prot 30.0 1.8E+02 0.0039 25.3 6.6 51 174-226 137-192 (216)
89 PF02645 DegV: Uncharacterised 30.0 2.3E+02 0.005 27.4 7.9 59 199-265 61-122 (280)
90 PF08029 HisG_C: HisG, C-termi 30.0 49 0.0011 26.3 2.6 25 200-224 49-73 (75)
91 PRK14460 ribosomal RNA large s 29.8 6.1E+02 0.013 25.8 12.6 146 163-328 163-322 (354)
92 PF00532 Peripla_BP_1: Peripla 29.4 4.3E+02 0.0093 25.3 9.6 75 174-264 18-92 (279)
93 PRK07379 coproporphyrinogen II 29.2 5.3E+02 0.012 26.5 10.7 11 327-338 125-135 (400)
94 PF01902 ATP_bind_4: ATP-bindi 29.0 3.1E+02 0.0068 26.0 8.4 19 305-323 92-110 (218)
95 TIGR03249 KdgD 5-dehydro-4-deo 28.7 3.3E+02 0.0071 26.7 8.7 76 188-272 73-153 (296)
96 COG0635 HemN Coproporphyrinoge 28.5 5.2E+02 0.011 26.9 10.6 88 263-367 64-153 (416)
97 TIGR00683 nanA N-acetylneurami 28.2 4.2E+02 0.009 26.0 9.4 53 189-245 70-125 (290)
98 COG2100 Predicted Fe-S oxidore 28.2 3.3E+02 0.0072 28.1 8.6 81 259-367 138-220 (414)
99 TIGR03679 arCOG00187 arCOG0018 27.8 5.1E+02 0.011 24.3 13.8 17 343-359 150-167 (218)
100 TIGR00539 hemN_rel putative ox 27.6 1.4E+02 0.0029 30.2 6.0 54 162-219 57-115 (360)
101 PLN02417 dihydrodipicolinate s 27.5 3.6E+02 0.0079 26.2 8.8 52 189-244 70-124 (280)
102 PRK06756 flavodoxin; Provision 27.4 4E+02 0.0086 22.9 12.1 25 169-193 12-36 (148)
103 TIGR00262 trpA tryptophan synt 26.9 5.8E+02 0.013 24.6 17.7 136 188-367 86-226 (256)
104 TIGR02313 HpaI-NOT-DapA 2,4-di 26.7 3.7E+02 0.0081 26.3 8.8 53 189-245 69-124 (294)
105 PTZ00397 macrophage migration 26.5 3.8E+02 0.0082 22.3 7.8 35 310-345 72-108 (116)
106 cd06602 GH31_MGAM_SI_GAA This 25.8 1.5E+02 0.0033 29.8 5.9 63 309-375 23-93 (339)
107 PRK13347 coproporphyrinogen II 25.2 7.4E+02 0.016 25.9 11.1 17 349-365 189-205 (453)
108 cd06343 PBP1_ABC_ligand_bindin 25.2 2.4E+02 0.0053 27.5 7.2 57 168-225 153-209 (362)
109 TIGR00249 sixA phosphohistidin 25.0 2.1E+02 0.0044 25.2 6.0 47 311-368 55-106 (152)
110 cd06350 PBP1_GPCR_family_C_lik 25.0 4.5E+02 0.0097 25.3 9.0 54 171-225 172-227 (348)
111 cd06267 PBP1_LacI_sugar_bindin 24.7 1.5E+02 0.0033 26.5 5.3 22 203-224 44-65 (264)
112 PRK08659 2-oxoglutarate ferred 24.7 7.4E+02 0.016 25.4 10.7 22 194-215 279-300 (376)
113 PRK05660 HemN family oxidoredu 24.6 7.5E+02 0.016 25.1 10.9 37 327-365 117-160 (378)
114 PF03358 FMN_red: NADPH-depend 24.5 1.3E+02 0.0028 25.8 4.5 30 165-194 8-38 (152)
115 PRK07119 2-ketoisovalerate fer 23.9 4.8E+02 0.01 26.5 9.2 82 182-277 267-348 (352)
116 cd06349 PBP1_ABC_ligand_bindin 23.7 4.1E+02 0.009 25.6 8.4 53 170-222 146-198 (340)
117 cd06595 GH31_xylosidase_XylS-l 22.8 7.2E+02 0.016 24.3 11.4 103 172-281 23-148 (292)
118 cd07939 DRE_TIM_NifV Streptomy 22.7 6.7E+02 0.015 23.9 17.3 104 204-323 72-181 (259)
119 PRK08898 coproporphyrinogen II 22.6 8.4E+02 0.018 24.9 11.4 87 264-367 52-138 (394)
120 PF13407 Peripla_BP_4: Peripla 22.6 2.2E+02 0.0048 26.0 6.0 53 172-225 13-66 (257)
121 PF10673 DUF2487: Protein of u 22.6 1.9E+02 0.0041 26.0 5.2 34 190-223 52-93 (142)
122 TIGR00289 conserved hypothetic 22.6 6.8E+02 0.015 23.9 13.4 17 343-359 148-165 (222)
123 PTZ00322 6-phosphofructo-2-kin 22.6 6.6E+02 0.014 27.7 10.5 45 162-211 438-486 (664)
124 PF08029 HisG_C: HisG, C-termi 22.5 93 0.002 24.7 2.9 25 347-371 49-73 (75)
125 cd01545 PBP1_SalR Ligand-bindi 22.2 2E+02 0.0042 26.4 5.6 48 175-224 17-66 (270)
126 cd06348 PBP1_ABC_ligand_bindin 22.1 2.8E+02 0.0061 26.8 6.9 54 171-225 149-202 (344)
127 TIGR02017 hutG_amidohyd N-form 22.1 1.3E+02 0.0027 29.5 4.4 30 265-298 122-151 (263)
128 COG0513 SrmB Superfamily II DN 22.0 2.6E+02 0.0057 29.8 7.1 63 168-241 104-167 (513)
129 PRK10481 hypothetical protein; 21.9 47 0.001 31.9 1.3 29 343-371 72-100 (224)
130 cd01542 PBP1_TreR_like Ligand- 21.8 2E+02 0.0044 26.1 5.5 50 173-224 15-65 (259)
131 PRK11658 UDP-4-amino-4-deoxy-L 21.8 1.3E+02 0.0028 30.3 4.6 16 263-278 362-377 (379)
132 PF07429 Glyco_transf_56: 4-al 21.7 3.4E+02 0.0074 28.0 7.4 77 189-271 185-264 (360)
133 PRK09057 coproporphyrinogen II 21.6 8.1E+02 0.018 24.9 10.4 15 264-278 34-48 (380)
134 cd06594 GH31_glucosidase_YihQ 21.4 2.5E+02 0.0054 28.0 6.4 30 347-376 70-99 (317)
135 PF05036 SPOR: Sporulation rel 21.4 2.5E+02 0.0054 20.6 5.1 48 173-220 15-75 (76)
136 cd06286 PBP1_CcpB_like Ligand- 21.3 2.1E+02 0.0045 26.2 5.5 52 171-224 13-65 (260)
137 cd00951 KDGDH 5-dehydro-4-deox 21.2 7.7E+02 0.017 24.0 10.9 51 189-244 69-122 (289)
138 cd06340 PBP1_ABC_ligand_bindin 20.9 7.8E+02 0.017 23.9 11.3 52 170-221 155-206 (347)
139 TIGR03470 HpnH hopanoid biosyn 20.7 2.1E+02 0.0045 28.5 5.7 50 177-227 153-204 (318)
140 cd00952 CHBPH_aldolase Trans-o 20.6 4.3E+02 0.0093 26.2 7.9 55 187-245 75-132 (309)
141 PRK13505 formate--tetrahydrofo 20.6 1.1E+03 0.025 25.8 11.5 157 164-377 339-499 (557)
142 TIGR03588 PseC UDP-4-keto-6-de 20.6 82 0.0018 31.5 2.8 14 203-216 309-322 (380)
143 cd06595 GH31_xylosidase_XylS-l 20.6 2.5E+02 0.0054 27.5 6.2 58 315-372 26-98 (292)
144 cd06329 PBP1_SBP_like_3 Peripl 20.3 7.9E+02 0.017 23.8 9.9 54 169-222 153-209 (342)
145 PF08338 DUF1731: Domain of un 20.2 60 0.0013 23.5 1.3 17 194-210 31-47 (48)
146 cd06599 GH31_glycosidase_Aec37 20.1 2.5E+02 0.0055 27.8 6.1 64 309-376 28-101 (317)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=3.3e-83 Score=656.97 Aligned_cols=290 Identities=75% Similarity=1.213 Sum_probs=269.9
Q ss_pred cccccccccCCceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCc
Q 016721 88 EYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSP 167 (384)
Q Consensus 88 ~~~~~~~~~~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSP 167 (384)
..+++.+.+++|+||||+|||||++++||++||+|||+|++||++|+++|++|++|+++|+++|++|++++|++||||||
T Consensus 78 ~~~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSP 157 (485)
T PLN02449 78 AVADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSP 157 (485)
T ss_pred cccccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCc
Confidence 45666667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhc
Q 016721 168 LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDA 247 (384)
Q Consensus 168 L~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~ 247 (384)
|+.+|++|+++|++.|++.+.+++|++|||||+|+++|+|++|+++|+++||+||||||||.+||||+++.+++++++..
T Consensus 158 L~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~ 237 (485)
T PLN02449 158 LRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 237 (485)
T ss_pred hHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcc
Confidence 99999999999999998877889999999999999999999999999999999999999999999999999999887754
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcC
Q 016721 248 YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRG 327 (384)
Q Consensus 248 ~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g 327 (384)
....+++++|++||++|+||+|++++|++++++++.+++.+|||||||+|+++++++||||++||++|+++|+++|..++
T Consensus 238 ~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~ 317 (485)
T PLN02449 238 YLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARG 317 (485)
T ss_pred cccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCC
Confidence 43456899999999999999999999999998876666679999999999999955799999999999999999994332
Q ss_pred CCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 328 INNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 328 ~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
..++|.++||||+||++||+|+|+|+|++|+++|+|+|+|+|||||+|+.
T Consensus 318 ~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhi 367 (485)
T PLN02449 318 ILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHI 367 (485)
T ss_pred CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccch
Confidence 22679999999999999999999999999999999999999999999974
No 2
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=1e-79 Score=602.81 Aligned_cols=270 Identities=44% Similarity=0.777 Sum_probs=255.4
Q ss_pred cCCceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHH
Q 016721 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (384)
Q Consensus 96 ~~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 175 (384)
+.+|+||||||||||++.+||++||+|||+|++|+++|+++|+ +|+++|++.|++|++++|+.|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~---~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY---PLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh---hhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 4578999999999999999999999999999999999987765 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEE
Q 016721 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (384)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~ 255 (384)
+++|+++|+ ..+++|++|||||+|+++|++++|+++|+++||++|||||||++|||++++.+.+++++.+ ..+.++
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~ 154 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKIS 154 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceE
Confidence 999999997 4489999999999999999999999999999999999999999999999999999998866 347899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCC-CCeeE
Q 016721 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTL 334 (384)
Q Consensus 256 ~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~-~~~~l 334 (384)
+|++||++|.||++|+++|++.+++++ .++.+|||||||||++++++ ||||++||++|+++|+++| |+. ++|.+
T Consensus 155 ~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~l---g~~~~~~~~ 229 (320)
T COG0276 155 TIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEAL---GLPEEEYDL 229 (320)
T ss_pred EecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHHc---CCCchheeE
Confidence 999999999999999999999999987 35679999999999999964 9999999999999999999 763 68999
Q ss_pred EEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 335 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 335 afQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
+|||++|+++||+|+|+|++++|.++|+|+|+|||||||||..
T Consensus 230 ~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhl 272 (320)
T COG0276 230 TFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHL 272 (320)
T ss_pred EeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhH
Confidence 9999999999999999999999999999999999999999963
No 3
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=1.7e-78 Score=598.19 Aligned_cols=270 Identities=43% Similarity=0.723 Sum_probs=234.8
Q ss_pred ceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHHHHH
Q 016721 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178 (384)
Q Consensus 99 K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~~ 178 (384)
|+||||+|||||++++||++||++||+|++|+++| ++| +++|+++|+++|++|++++|++|||+|||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 654 458999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEec
Q 016721 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (384)
Q Consensus 179 L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~ 258 (384)
|+++|++.+.+++|++|||||+|+|+++|++|+++|+++|+++|||||||.+||||+++.+.+++++.. ..+++++|+
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~--~~~~~~~i~ 155 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSR--PNPKVRFIP 155 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTH--SSSEEEEE-
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcC--CCCeEEEeC
Confidence 999999887789999999999999999999999999999999999999999999999999999998744 346799999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEec
Q 016721 259 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQS 338 (384)
Q Consensus 259 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQS 338 (384)
+|++||.||+||+++|++++++++.++..+|||||||||+++++++||||.+||++|+++|+++| |+. +|.++|||
T Consensus 156 ~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l---~~~-~~~~~fQS 231 (316)
T PF00762_consen 156 SFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERL---GLP-EWRLAFQS 231 (316)
T ss_dssp --TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHT---TTS-SEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHc---CCC-ceEEEEEC
Confidence 99999999999999999999987533347899999999999995469999999999999999999 775 49999999
Q ss_pred CccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 339 RVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 339 r~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
|+|+++||+|+|+|+|++|+++|+|+|+|+|||||+|+.
T Consensus 232 ~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~l 270 (316)
T PF00762_consen 232 RFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCL 270 (316)
T ss_dssp -SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSH
T ss_pred CCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccH
Confidence 999999999999999999999999999999999999983
No 4
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=2.8e-76 Score=583.73 Aligned_cols=274 Identities=47% Similarity=0.839 Sum_probs=254.1
Q ss_pred cCCceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHH
Q 016721 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (384)
Q Consensus 96 ~~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 175 (384)
+++|+||||+|||||+|++||++||+|||+|++||++|+++| +++++.+|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~--~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKW--RKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCcccc--ccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 456789999999999999999999999999999999997654 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEE
Q 016721 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (384)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~ 255 (384)
+++|++.|++. .+++|++|||||+|+|+++|++|+++|+++|+++|||||||.+|||++++.+.+++.+.... .+.++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~ 157 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTIS 157 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEE
Confidence 99999999754 57899999999999999999999999999999999999999999999999999999875432 15799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEE
Q 016721 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLA 335 (384)
Q Consensus 256 ~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~la 335 (384)
+|++|+++|.||+|++++|++.+++++.+++.+|||||||||+++++ +||||++||++|+++|+++| |...+|.++
T Consensus 158 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~-~Gd~Y~~~~~~ta~~l~~~l---~~~~~~~~~ 233 (322)
T TIGR00109 158 VIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVD-EGDPYPAECEATTRLIAEKL---GFPNEYRLT 233 (322)
T ss_pred EeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhh-CCCChHHHHHHHHHHHHHHc---CCCCCeEEE
Confidence 99999999999999999999999887555556899999999999996 69999999999999999998 533589999
Q ss_pred EecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 336 YQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 336 fQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
|||++|+.+||+|+|+++|++|+++|+|+|+|+|+||++|+.
T Consensus 234 fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~D~l 275 (322)
T TIGR00109 234 WQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTADHL 275 (322)
T ss_pred EeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccccch
Confidence 999999999999999999999999999999999999999974
No 5
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.8e-76 Score=569.14 Aligned_cols=295 Identities=48% Similarity=0.781 Sum_probs=270.4
Q ss_pred eeccceeecCCccccccccc-ccCCceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccc
Q 016721 75 CAAGVATYGENAVEYESHAQ-AAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAP 153 (384)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ 153 (384)
...+.++++..+....+.+. ..+.|+||||+|||||++++||.+||.++|.|++||++|+ |+|..|+.+|+++|+|
T Consensus 13 ~~~t~~~~~~s~~a~~~~~~~~~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtP 89 (395)
T KOG1321|consen 13 LVSTQLTISASSSATFSSSVAQKKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTP 89 (395)
T ss_pred hhcCcccccCCccccccccccccCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCc
Confidence 33444455544322222222 2455999999999999999999999999999999999996 5788999999999999
Q ss_pred hhHhhhcccCCCCchhHHHHHHHHHHHHHHHhcC---CCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccC
Q 016721 154 KSKEGYAAIGGGSPLRKITDEQAQALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (384)
Q Consensus 154 ks~~~Y~~IgggSPL~~~T~~qa~~L~~~L~~~g---~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~s 230 (384)
|+.+.|+.|||||||+.||+.|++.+.+.|++.. ...++|+|||||+|+.+|++++|+++|++|+|++|+|||||++
T Consensus 90 Kvqe~Y~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~s 169 (395)
T KOG1321|consen 90 KVQEQYREIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCS 169 (395)
T ss_pred hHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeee
Confidence 9999999999999999999999999999999876 5678999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCC--CceEEEEeeCCCchhhhccCCCch
Q 016721 231 TTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPY 308 (384)
Q Consensus 231 Ttgs~~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~--~~~~LLFSaHGlP~~~v~~~GDpY 308 (384)
|+||+++.+.+.+++.....++++.+|++|+.+++||+++|++|++.|++|+++ +++.++|||||+|+++|+ +||||
T Consensus 170 TsGSSln~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn-~GDpY 248 (395)
T KOG1321|consen 170 TSGSSLNELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVN-AGDPY 248 (395)
T ss_pred cCcccHHHHHHHHHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHh-cCCCc
Confidence 999999999999999888788999999999999999999999999999999876 789999999999999996 79999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecC
Q 016721 309 RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLT 376 (384)
Q Consensus 309 ~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~ 376 (384)
+.|+++|+++||++| +..++++++|||++||.+||+|+|+++++.|.++|+|++++||++||+|-
T Consensus 249 ~~Ei~atv~~iMeeL---~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFvSeH 313 (395)
T KOG1321|consen 249 PAEIAATVDLIMEEL---KYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFVSEH 313 (395)
T ss_pred HHHHHHHHHHHHHHh---ccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhhhHH
Confidence 999999999999999 56689999999999999999999999999999999999999999999984
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=6.8e-71 Score=542.90 Aligned_cols=256 Identities=30% Similarity=0.518 Sum_probs=228.7
Q ss_pred cCCceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHH
Q 016721 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (384)
Q Consensus 96 ~~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~q 175 (384)
|++|+||||+|||||++++||++||+|+|.|+. |. +..|+ +++++|++|||+|||+.+|++|
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~~-----~~~l~---------~~~~~Y~~iGG~SPL~~~T~~q 62 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----PS-----EEMLQ---------DLKDRYEAIGGISPLAKITDEQ 62 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----CC-----HHHHH---------HHHHHHHHhCCcChHHHHHHHH
Confidence 456789999999999999999999999999872 21 11232 2469999999999999999999
Q ss_pred HHHHHHHHHhc--CCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCC
Q 016721 176 AQALKTALEAK--NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP 253 (384)
Q Consensus 176 a~~L~~~L~~~--g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~ 253 (384)
+++|+++|++. +.+++|++|||||+|+++|+|++|+++|+++|++||||||||.+||||+.+.+.++.++. +.++
T Consensus 63 a~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~---~~~~ 139 (311)
T PRK12435 63 AKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKL---GGPT 139 (311)
T ss_pred HHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhccc---CCCe
Confidence 99999999864 457999999999999999999999999999999999999999999999988777665442 3468
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhhcCCC--CceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCC
Q 016721 254 VSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND 331 (384)
Q Consensus 254 l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~--~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~ 331 (384)
+++|++|++||.||+|++++|++++++++.+ ++.+|||||||||+++++ +||||++||++|+++|+++| |+. +
T Consensus 140 ~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~-~GDpY~~q~~~t~~~v~~~l---~~~-~ 214 (311)
T PRK12435 140 ITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIA-AGDPYPDQLEETADLIAEQA---NVE-H 214 (311)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhh-CCCCHHHHHHHHHHHHHHHc---CCC-C
Confidence 9999999999999999999999999887432 457899999999999996 69999999999999999998 774 6
Q ss_pred eeEEEecCc-cCCCCCCCcHHHHHHHHHhC-CCCeEEEEeceeeecCc
Q 016721 332 HTLAYQSRV-GPVKWLKPYTDEVLVELGQK-GVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 332 ~~lafQSr~-G~~~WL~P~t~d~L~~L~~~-Gvk~VvVvP~gFVsd~~ 377 (384)
|.++||||+ |+++||+|+|+|+|++|+++ |+|+|+|+|||||+|+.
T Consensus 215 ~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhl 262 (311)
T PRK12435 215 YAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHL 262 (311)
T ss_pred CeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhH
Confidence 999999997 79999999999999999988 99999999999999984
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=3e-70 Score=541.51 Aligned_cols=272 Identities=45% Similarity=0.763 Sum_probs=254.9
Q ss_pred CCceEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHHH
Q 016721 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (384)
Q Consensus 97 ~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa 176 (384)
++|+||||+|||||++++||++||+|||+|++|+++|.++|+ ++|+++|+++|++|++++|+.||+||||+.+|++|+
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~--~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 80 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQ--PLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQA 80 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHH--HHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 478999999999999999999999999999999999998875 579999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEEE
Q 016721 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSI 256 (384)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~ 256 (384)
++|++.|++.+.++.|++||+||+|+++|+|++|+++|+++|+++|||||||.+|+|++.+++.+++++... .+.+++
T Consensus 81 ~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~ 158 (333)
T PRK00035 81 EALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRF 158 (333)
T ss_pred HHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEE
Confidence 999999987777899999999999999999999999999999999999999999999999999999887542 468999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhhcCCC-CceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCC-CCCeeE
Q 016721 257 IRSWYQREGYVNSMADLIQKELGKFQKP-EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 334 (384)
Q Consensus 257 I~~~~~~p~yI~ala~~I~~~l~~~~~~-~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~-~~~~~l 334 (384)
+++|+++|.||++++++|++++++.+.+ ++.+||||+||+|+++++ +||||.+||++|++++++++ |+ ..+|.+
T Consensus 159 i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~-~gd~Y~~~~~~t~~~l~~~l---~~~~~~~~~ 234 (333)
T PRK00035 159 IRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYID-KGDPYQQQCEETARLLAEAL---GLPDEDYDL 234 (333)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhh-cCCChHHHHHHHHHHHHHHh---CCCCCCeEE
Confidence 9999999999999999999999876533 456899999999999985 69999999999999999998 65 357999
Q ss_pred EEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecC
Q 016721 335 AYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLT 376 (384)
Q Consensus 335 afQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~ 376 (384)
+|||++|+.+||+|+++++|++|+++|+|+|+|+|+|||+|.
T Consensus 235 ~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~ 276 (333)
T PRK00035 235 TYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPGFVSDH 276 (333)
T ss_pred EeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCeeeccc
Confidence 999999999999999999999999999999999999999998
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=1.5e-44 Score=324.07 Aligned_cols=159 Identities=46% Similarity=0.761 Sum_probs=149.6
Q ss_pred eEEEEEccCCCCCcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHHHHHH
Q 016721 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQAL 179 (384)
Q Consensus 100 ~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~~L 179 (384)
+||||+|||||++++||++||.+||+|++||++|.++ +++|+.+|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5999999999999999999999999999999999765 5689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEecC
Q 016721 180 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS 259 (384)
Q Consensus 180 ~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~ 259 (384)
++.|++.+.++.|++|||||+|+|+|+|++|+++|+++|+++|||||||.+||||+++.+.+++.+... .+++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987666799999999999999999999999999999999999999999999999999999887543 357999999
Q ss_pred CCCC
Q 016721 260 WYQR 263 (384)
Q Consensus 260 ~~~~ 263 (384)
||+|
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9986
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.95 E-value=1.5e-28 Score=215.45 Aligned_cols=105 Identities=42% Similarity=0.758 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCC-CCCeeEEEecCccCCCCC
Q 016721 268 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTLAYQSRVGPVKWL 346 (384)
Q Consensus 268 ~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~-~~~~~lafQSr~G~~~WL 346 (384)
++|+++|++++++.+ +++..|||||||+|+++++ +||||.+||.+|+++|+++| |+ ..+|.++||||+||.+||
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~~-~gd~Y~~~~~~~~~~v~~~l---~~~~~~~~~~fqS~~g~~~Wl 75 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDIK-KGDPYPDQCEETARLVAERL---GLPFDEYELAYQSRFGPGEWL 75 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHhh-CCCCHHHHHHHHHHHHHHHh---CCCCCCEEEEecCCCCCCCCC
Confidence 478999999998874 3446899999999999985 69999999999999999999 53 257999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 347 KPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 347 ~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
+|+|+|+|++|+++|+++|+|+|+||++|+.
T Consensus 76 ~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~ 106 (135)
T cd00419 76 EPSTDDALEELAKEGVKNVVVVPIGFVSDHL 106 (135)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECCccccccH
Confidence 9999999999999999999999999999985
No 10
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.66 E-value=7e-16 Score=149.19 Aligned_cols=196 Identities=20% Similarity=0.334 Sum_probs=124.3
Q ss_pred eEEEEEccCCCC------CcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHH
Q 016721 100 VGVLLLNLGGPD------TLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITD 173 (384)
Q Consensus 100 ~aVLLvNlGtP~------s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~ 173 (384)
+||||++|||.. +++.+++=+++-|.|.+|... +++.+|.
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~A---------fTS~~I~------------------------- 46 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRA---------FTSRIIR------------------------- 46 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEE---------ES-HHHH-------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE---------chHHHHH-------------------------
Confidence 599999999976 468899999999999887554 4666664
Q ss_pred HHHHHHHHHHHhc-CCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCC
Q 016721 174 EQAQALKTALEAK-NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRL 252 (384)
Q Consensus 174 ~qa~~L~~~L~~~-g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~ 252 (384)
+ +|.++ |. .| |++.+||++|.++|+++|+|+||+ ...|..++.+.+.+++.... -.
T Consensus 47 ---~----kl~~~~g~--~i--------~~~~eaL~~L~~~G~~~V~VQplh-----iipG~Ey~~l~~~v~~~~~~-F~ 103 (262)
T PF06180_consen 47 ---K----KLAERDGI--KI--------DSPEEALAKLADEGYTEVVVQPLH-----IIPGEEYEKLRATVEAYKHD-FK 103 (262)
T ss_dssp ---H----HHHHCHT---------------HHHHHHHHHHCT--EEEEEE-------SCSSHHHHHHHHHHHHHCCC-SS
T ss_pred ---H----HHHhcCCC--Cc--------CCHHHHHHHHHHCCCCEEEEeecc-----eeCcHhHHHHHHHHHHhhcc-CC
Confidence 2 44444 32 35 899999999999999999999999 78899999999888765421 12
Q ss_pred CEEEecCCCC------CHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhc
Q 016721 253 PVSIIRSWYQ------REGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDR 326 (384)
Q Consensus 253 ~l~~I~~~~~------~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~ 326 (384)
.+.+-++.-. ++.=++++++.|.+.+... ..+..+||++||.|+.. +..|. ..+.+.++ .
T Consensus 104 ~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~--~~~~a~vlmGHGt~h~a----n~~Y~-----~l~~~l~~---~ 169 (262)
T PF06180_consen 104 KIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKK--RKDEAVVLMGHGTPHPA----NAAYS-----ALQAMLKK---H 169 (262)
T ss_dssp EEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT---TTEEEEEEE---SCHH----HHHHH-----HHHHHHHC---C
T ss_pred eEEecccccccccccCChHHHHHHHHHHHHhcccc--CCCCEEEEEeCCCCCCc----cHHHH-----HHHHHHHh---C
Confidence 4666555544 4666666665555444322 24468999999999764 23454 33333333 2
Q ss_pred CCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeee
Q 016721 327 GINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTL 374 (384)
Q Consensus 327 g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVs 374 (384)
|.+ + -.+|.++ -.|++++++++|.+.|+|+|.++|+++|+
T Consensus 170 ~~~-~------v~vgtvE-G~P~~~~vi~~L~~~g~k~V~L~PlMlVA 209 (262)
T PF06180_consen 170 GYP-N------VFVGTVE-GYPSLEDVIARLKKKGIKKVHLIPLMLVA 209 (262)
T ss_dssp T-T-T------EEEEETT-SSSBHHHHHHHHHHHT-SEEEEEEESSS-
T ss_pred CCC-e------EEEEEeC-CCCCHHHHHHHHHhcCCCeEEEEeccccc
Confidence 432 2 2345555 57999999999999999999999999987
No 11
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.56 E-value=9.3e-14 Score=129.38 Aligned_cols=195 Identities=17% Similarity=0.308 Sum_probs=140.3
Q ss_pred CceEEEEEccCCCC------CcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHH
Q 016721 98 DKVGVLLLNLGGPD------TLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKI 171 (384)
Q Consensus 98 ~K~aVLLvNlGtP~------s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~ 171 (384)
||+|+|+|+|||.. |++.+++-+..-|.|++|.+. ++.+.|+
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDydvfrA---------fTS~kII----------------------- 48 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRA---------FTSRKII----------------------- 48 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHH---------HhHHHHH-----------------------
Confidence 58899999999998 689999999999999988654 5666665
Q ss_pred HHHHHHHHHHHHHhc-CCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhcc--
Q 016721 172 TDEQAQALKTALEAK-NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAY-- 248 (384)
Q Consensus 172 T~~qa~~L~~~L~~~-g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~-- 248 (384)
+ +|+++ |+++.. ...||.+|+++|+++++++||+ ...|-.++.+.+...+...
T Consensus 49 -----k----kLK~rdgi~~dT----------P~~aL~klk~~gy~eviiQ~lh-----iIpG~EyEklvr~V~~~~~dF 104 (265)
T COG4822 49 -----K----KLKERDGIDFDT----------PIQALNKLKDQGYEEVIIQPLH-----IIPGIEYEKLVREVNKYSNDF 104 (265)
T ss_pred -----H----HHHhhcCcccCC----------HHHHHHHHHHccchheeeeeee-----ecCchHHHHHHHHHHHHhhhh
Confidence 2 45554 555443 4678999999999999999999 7889888888777665432
Q ss_pred ----CCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHh
Q 016721 249 ----LSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLK 324 (384)
Q Consensus 249 ----~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~ 324 (384)
.+.|.+.+. .|++.+++|+. ..+.... .+..+||+.||.-+.. ...|. +.+.+...-
T Consensus 105 ~~lkig~PlLy~k---~DYe~~v~aik----~~~ppl~--k~e~~vlmgHGt~h~s----~~~Ya-----cLd~~~~~~- 165 (265)
T COG4822 105 KRLKIGRPLLYYK---NDYEICVEAIK----DQIPPLN--KDEILVLMGHGTDHHS----NAAYA-----CLDHVLDEY- 165 (265)
T ss_pred heeecCCceeech---hhHHHHHHHHH----HhcCCcC--cCeEEEEEecCCCccH----HHHHH-----HHHHHHHhc-
Confidence 233334332 34455555555 4443222 3357999999987654 34455 677776653
Q ss_pred hcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 325 DRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 325 ~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
|++ ++.++ ..+ -.|.++++|+.|.+.|++.|-++|++||+-+.
T Consensus 166 --~f~-~v~v~------~ve-~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~H 208 (265)
T COG4822 166 --GFD-NVFVA------AVE-GYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDH 208 (265)
T ss_pred --CCC-ceEEE------Eec-CCCcHHHHHHHHHHcCCceEEEeeeEEeechh
Confidence 553 33333 233 47999999999999999999999999998554
No 12
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.24 E-value=9.2e-11 Score=96.16 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=58.5
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCceEEEeeecC-CCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHH-HHHHHHHHHH
Q 016721 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG-SSIRVLQNIF 243 (384)
Q Consensus 166 SPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~-~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtg-s~~~~~~~~~ 243 (384)
||.+..+++++++|++++. +.+|++||+++ .|++++++++|.++|+++|+++||||+ +..++. ...+.+.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 3555667777887776663 46799999999 999999999999999999999999999 555555 5656665554
Q ss_pred H
Q 016721 244 R 244 (384)
Q Consensus 244 ~ 244 (384)
.
T Consensus 88 ~ 88 (101)
T cd03409 88 K 88 (101)
T ss_pred H
Confidence 4
No 13
>PRK02395 hypothetical protein; Provisional
Probab=99.15 E-value=2.2e-09 Score=104.82 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=126.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHH-HHHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS-IRVLQN 241 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~-~~~~~~ 241 (384)
|=||+......+..+.+.+.|.+++....|..||--..|+++++++++. .++|+|+|+|- +.|.. .+++.+
T Consensus 8 gHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL-----~~G~Hv~~DIP~ 79 (279)
T PRK02395 8 GHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFI-----SEGYFTEQVIPR 79 (279)
T ss_pred eCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEe-----ccccchhhhhHH
Confidence 6678766566666677777776654444688888669999999999985 58999999994 33433 456777
Q ss_pred HHHHhc-----cCC------CCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHH
Q 016721 242 IFREDA-----YLS------RLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRD 310 (384)
Q Consensus 242 ~~~~~~-----~~~------~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~ 310 (384)
.+.... ..+ ...+.+-++...+|.+++++.+++++.+...+.+++..||+.+||.+...- -.+
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~~~~~------a~~ 153 (279)
T PRK02395 80 ELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTERNEN------SAK 153 (279)
T ss_pred HhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCCCchh------HHH
Confidence 775310 111 456888889999999999999999988764322345679999999874310 112
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeee
Q 016721 311 QMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTL 374 (384)
Q Consensus 311 q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVs 374 (384)
.+++.++.+.++. ++ ..+.++|-. ..|++++++++|. .++|+|+|+.+++
T Consensus 154 ~~~~~a~~l~~~~---~~-~~V~~~fle-------~~P~l~~~l~~l~---~~~V~vvP~fL~~ 203 (279)
T PRK02395 154 AIYYHADRLRERG---RF-AEVEALFLD-------EEPEVDDWPDLFE---ADDVVVVPLFIAD 203 (279)
T ss_pred HHHHHHHHHHhhC---CC-CeEEEEecc-------CCCCHHHHHHHhC---CCeEEEEeeeccc
Confidence 2333444554432 33 357788864 2599999998875 4799999975543
No 14
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=98.76 E-value=4.3e-08 Score=80.29 Aligned_cols=72 Identities=25% Similarity=0.475 Sum_probs=61.5
Q ss_pred EEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEE
Q 016721 289 IFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 368 (384)
Q Consensus 289 LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVv 368 (384)
|||++||.|.. ++|...+++.++.+.+++ + ..++.++|++. +.|++++++++|.++|+++|+|+
T Consensus 2 lllv~HGs~~~------s~~~~~~~~~~~~l~~~~---~-~~~v~~a~~~~------~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 2 LLVVGHGSPYK------DPYKKDIEAQAHNLAESL---P-DFPYYVGFQSG------LGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred EEEEECCCCCC------ccHHHHHHHHHHHHHHHC---C-CCCEEEEEECC------CCCCHHHHHHHHHHcCCCeEEEE
Confidence 79999999843 578888998999998876 2 24689999994 68999999999999999999999
Q ss_pred eceeeecCc
Q 016721 369 PVRYTLLTE 377 (384)
Q Consensus 369 P~gFVsd~~ 377 (384)
|+.|+ ++.
T Consensus 66 Pl~~~-~g~ 73 (101)
T cd03409 66 PLAPV-SGD 73 (101)
T ss_pred eCccc-cCh
Confidence 99999 554
No 15
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.74 E-value=2e-07 Score=78.89 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=82.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeec-CCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY-~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~ 241 (384)
|-||+..... +..+++.+.|.++.....|+.||-. +.|+++++++++.++|+++|+++|+| ...|...+++.+
T Consensus 7 ~HGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~f-----L~~G~h~~~i~~ 80 (117)
T cd03414 7 GRGSSDPDAN-ADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYL-----LFTGVLMDRIEE 80 (117)
T ss_pred cCCCCCHHHH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEech-----hcCCchHHHHHH
Confidence 5567654433 4556677777666544678888865 69999999999999999999999998 344555566666
Q ss_pred HHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Q 016721 242 IFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (384)
Q Consensus 242 ~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~ 277 (384)
.+.+....+...+.+-++...+|.+++++.++++++
T Consensus 81 ~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 81 QVAELAAEPGIEFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred HHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhh
Confidence 665543224567888999999999999999999875
No 16
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=98.73 E-value=1.9e-07 Score=81.20 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=87.8
Q ss_pred eEEEEEccCCCC-----CcchHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHH
Q 016721 100 VGVLLLNLGGPD-----TLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (384)
Q Consensus 100 ~aVLLvNlGtP~-----s~~dV~~fL~~~~~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~ 174 (384)
+||||+.+||.+ +++.+.+=+++-+.|..|... ++..+|.
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~a---------fts~~i~-------------------------- 45 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWA---------FTSRMIR-------------------------- 45 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEE---------ecHHHHH--------------------------
Confidence 489999999988 345566666666776665322 3454443
Q ss_pred HHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCE
Q 016721 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPV 254 (384)
Q Consensus 175 qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l 254 (384)
+ +|++++. ..|++.++|++|.++|+++|+|+|+| ...|..++++.+.+++.. .+...+
T Consensus 46 --~----~l~~~~~----------~~p~~~eaL~~l~~~G~~~V~V~Pl~-----l~~G~e~~di~~~v~~~~-~~~~~i 103 (127)
T cd03412 46 --K----KLKKRGI----------EVDTPEEALAKLAADGYTEVIVQSLH-----IIPGEEYEKLKREVDAFK-KGFKKI 103 (127)
T ss_pred --H----HHHhcCC----------CCCCHHHHHHHHHHCCCCEEEEEeCe-----eECcHHHHHHHHHHHHHh-CCCceE
Confidence 2 3444331 23999999999999999999999999 566888889998888765 345568
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 016721 255 SIIRSWYQREGYVNSMADLIQK 276 (384)
Q Consensus 255 ~~I~~~~~~p~yI~ala~~I~~ 276 (384)
.+-++.-.++.-++.+++.|.+
T Consensus 104 ~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 104 KLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred EEccCCCCCHHHHHHHHHHHHh
Confidence 8888888888888888866654
No 17
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.62 E-value=2.4e-07 Score=79.76 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=78.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEe-eecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHH-HHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS-IRVLQ 240 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~-~~~~~ 240 (384)
|-||+... +.+..+++.+.|.+++....|+.| |.|+.|++++++++|.++|+++|+++|+|-. .|.- .+++.
T Consensus 8 ~hGS~~~~-~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~-----~G~h~~~dip 81 (126)
T PRK00923 8 GHGSRLPY-NKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLA-----HGVHTKRDIP 81 (126)
T ss_pred eCCCCChH-HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhc-----cCcccccccc
Confidence 55676543 345566777777766556678888 6899999999999999999999999999943 2322 23344
Q ss_pred HHHH-------Hh-ccCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Q 016721 241 NIFR-------ED-AYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (384)
Q Consensus 241 ~~~~-------~~-~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~ 277 (384)
+++. +. ...+.+.+.+-++...||.+++++.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 82 RILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred hhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 4332 11 1124456778899999999999999999763
No 18
>PLN02757 sirohydrochlorine ferrochelatase
Probab=98.54 E-value=1.2e-06 Score=78.79 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEe-eecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHH-HHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS-IRVLQ 240 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~-~~~~~ 240 (384)
|-||+-.... +..+++.+.|.++.....|..| |.+.+|+++++|+++.+.|+++|+|+|+|- ..|.- .+++.
T Consensus 20 gHGSrd~~a~-~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL-----~~G~H~~~DIp 93 (154)
T PLN02757 20 DHGSRRKESN-LMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFL-----SPGRHWQEDIP 93 (154)
T ss_pred eCCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhh-----cCCcchHhHHH
Confidence 5567665533 3334455555443222234444 478999999999999999999999999994 33433 34566
Q ss_pred HHHHHhc-cCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 016721 241 NIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (384)
Q Consensus 241 ~~~~~~~-~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (384)
+.+++.. ..+.+.+.+-++...||.+++++.+++++++...
T Consensus 94 ~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 94 ALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 6665432 2456778999999999999999999999998653
No 19
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.46 E-value=3.3e-06 Score=73.54 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=79.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEee-ecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM-rY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~ 241 (384)
|-||+.....+.. +.+.+.|.++ .+++|+.|| -+..|++++++++|.++|+++|+|+|+|-. ..+...+++.+
T Consensus 7 gHGSR~~~~~~~~-~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~----~G~Hv~~DiP~ 80 (125)
T cd03415 7 THGSRRNTFNEDM-EEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLG----RGNHVARDIMG 80 (125)
T ss_pred ecCCCChHHHHHH-HHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhcc----CCcchHHHHHH
Confidence 5577776655443 4455566543 245577774 889999999999999999999999999842 22455667777
Q ss_pred HHHHh--------cc-CCCCCEEEecCCCCCHHHHHHHHHHHHH
Q 016721 242 IFRED--------AY-LSRLPVSIIRSWYQREGYVNSMADLIQK 276 (384)
Q Consensus 242 ~~~~~--------~~-~~~~~l~~I~~~~~~p~yI~ala~~I~~ 276 (384)
.+.+. .+ .+.+.+.+-++..+||.+.+++++++++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 81 ELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 77652 11 1345688999999999999999999875
No 20
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=98.21 E-value=2.5e-06 Score=70.64 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCceEEEee-ecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHH-HHHHHHHHhc-cCCCCC
Q 016721 177 QALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR-VLQNIFREDA-YLSRLP 253 (384)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aM-rY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~-~~~~~~~~~~-~~~~~~ 253 (384)
+.+.+.|.++.. ..|..|| .+..|++++++++|.+.|+++|+|+|+|- ..|...+ ++.+.+++.. ..+.+.
T Consensus 13 ~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL-----~~G~h~~~DIp~~l~~~~~~~~~~~ 86 (105)
T PF01903_consen 13 EDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFL-----FPGYHVKRDIPEALAEARERHPGIE 86 (105)
T ss_dssp HHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESS-----SSSHHHHCHHHHHHCHHHHCSTTEE
T ss_pred HHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeee-----cCccchHhHHHHHHHHHHhhCCceE
Confidence 444445555444 6788888 68999999999999999999999999994 3344433 4777765533 234567
Q ss_pred EEEecCCCCCHHHHHHHHH
Q 016721 254 VSIIRSWYQREGYVNSMAD 272 (384)
Q Consensus 254 l~~I~~~~~~p~yI~ala~ 272 (384)
+.+-++...||...+++++
T Consensus 87 v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 87 VRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp EEE---GGGSCCHHHHHH-
T ss_pred EEECCCCCCCHHHHHHHhC
Confidence 8889999999999998874
No 21
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=98.09 E-value=4.5e-05 Score=76.71 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=82.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceEEEee-ecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHH
Q 016721 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (384)
Q Consensus 162 IgggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM-rY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~ 240 (384)
+|=||......+.. +.|.+.|.++. +++|+.|| -+.+|++++++++|.++|+++|+|+|+|-. .-+.+.+++.
T Consensus 12 vgHGSRdp~~~~~~-~~La~~l~~~~-~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~----~G~Hv~~DIP 85 (335)
T PRK05782 12 IGHGSRRETFNSDM-EGMANYLKEKL-GVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLG----RGNHVFRDIM 85 (335)
T ss_pred EecCCCChHHHHHH-HHHHHHHHhcc-CCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEeccccc----CCcchhhhHH
Confidence 46677766655443 44555665432 34577774 899999999999999999999999999842 2235566777
Q ss_pred HHHHHh-------ccC--CCCCEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 016721 241 NIFRED-------AYL--SRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (384)
Q Consensus 241 ~~~~~~-------~~~--~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (384)
+.+... ... +.+.+++-++...||.+++++.+++++.+...
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 86 GELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred HHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 776631 111 23556888999999999999999999998643
No 22
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=98.06 E-value=8.9e-05 Score=71.58 Aligned_cols=187 Identities=15% Similarity=0.173 Sum_probs=115.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEee-ecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM-rY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~ 241 (384)
|-||++....+.. +++.+.+.+++....|..|| -+.+|+++++++.+..+|+++|+++|||-. ......+++.+
T Consensus 9 gHGsr~p~~~~~~-~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~----~g~H~~~DIP~ 83 (245)
T COG2138 9 GHGSRLPRGREVA-EAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLA----AGYHTKRDIPA 83 (245)
T ss_pred ecCCCCccHHHHH-HHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhc----cCchhhcccHH
Confidence 6678888775544 44444677665544566665 888999999999999999999999999943 22344567777
Q ss_pred HHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHH
Q 016721 242 IFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQ 321 (384)
Q Consensus 242 ~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~ 321 (384)
++...... .+...+. ++..++...+.+.+++.+.....+. +-..+++..||-=.... +-+.| .+++
T Consensus 84 ~L~~~~~~-~~~~~~~-p~G~~~~~~~~~~~r~~~~~~~~~~-~~~~vv~~~~Gs~~~~~--~~~~~---------~va~ 149 (245)
T COG2138 84 ELGLARQA-HPQVDLS-PLGTHPAVLDLLGQRLEDAGADEAD-DAERVVLEPRGSSDPIA--NAAVY---------RVAR 149 (245)
T ss_pred HHHHhhhc-CCccccc-ccCCchHHHHHHHHHHHHhcccccc-ccceEEEeccCCCcccc--hhHHH---------HHHH
Confidence 77653321 1123333 8999999999999999888765431 11236777766322211 11222 2333
Q ss_pred HHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecCc
Q 016721 322 RLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLTE 377 (384)
Q Consensus 322 ~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~~ 377 (384)
.+.. |. ..|....=--.|. -.|.+.+...++. .++++|+| -|+.||.
T Consensus 150 ~l~~-~~-~~~~~~~~~~~~~---~~~~l~~~~~~~~---~~~~vv~P-~fL~~G~ 196 (245)
T COG2138 150 LLGE-GT-ASWKAVITLFTGV---AEPGLAGETARLR---YRRVVVLP-YFLFDGL 196 (245)
T ss_pred HHHh-cc-CCceeeeeeeccc---cCcchhhhhhhcc---cCcEEEEE-hhHhCch
Confidence 3321 22 2443322111122 2588888877776 57888888 5777664
No 23
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=97.69 E-value=0.00026 Score=58.34 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEee-ecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHH-HHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS-IRVLQ 240 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM-rY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~-~~~~~ 240 (384)
+-||+..... +..+.+.+.|.++.....|+.|+ ....|.+++++++|.++|+++|+++|+| ...|.. .+++.
T Consensus 6 ~hGS~~~~~~-~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlf-----l~~G~h~~~dip 79 (101)
T cd03416 6 GHGSRDPRAA-EALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLF-----LLAGGHVKEDIP 79 (101)
T ss_pred EcCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeE-----eCCCccccccHH
Confidence 3355554332 34455666666654455688785 5669999999999999999999999998 344443 24566
Q ss_pred HHHHHhc-cCCCCCEEEec
Q 016721 241 NIFREDA-YLSRLPVSIIR 258 (384)
Q Consensus 241 ~~~~~~~-~~~~~~l~~I~ 258 (384)
+.+++.. ..+.+++++.+
T Consensus 80 ~~~~~~~~~~~~~~i~~~~ 98 (101)
T cd03416 80 AALAAARARHPGVRIRYAP 98 (101)
T ss_pred HHHHHHHHHCCCeEEEecC
Confidence 6655432 22344555543
No 24
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.68 E-value=0.00058 Score=68.27 Aligned_cols=107 Identities=16% Similarity=0.286 Sum_probs=75.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceEEEee--ecC-----CCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM--rY~-----~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~ 236 (384)
.|+|-.....+.+++|.++|+.. .+ +.+++ +++ .|+++++|++|.++|+++|+|+|.- |.+-...+.+
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~~-~~--~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~g--Fv~D~lETl~ 279 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGFP-NE--YRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIG--FTADHLETLY 279 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCCC-CC--eEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCc--ccccchhHHH
Confidence 57888888888888888888621 23 34444 544 8999999999999999999999982 3322333322
Q ss_pred HH---HHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHH
Q 016721 237 RV---LQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKEL 278 (384)
Q Consensus 237 ~~---~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l 278 (384)
+. ..+.+.+. +.-.+..++...++|.||+++++.|++.+
T Consensus 280 ei~~e~~~~~~~~---G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 280 EIDEEYREVAEDA---GGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred hhhHHHHHHHHHc---CCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 21 11223322 22239999999999999999999998864
No 25
>PLN02449 ferrochelatase
Probab=97.59 E-value=0.0011 Score=69.65 Aligned_cols=114 Identities=16% Similarity=0.252 Sum_probs=79.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceEEEee--ecC-----CCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM--rY~-----~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~ 236 (384)
.|.|-....++-+++|.++|+..+...++.+++ |.| .|+++++|++|.++|+++|+++|.- |.+-...+.
T Consensus 294 ~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPig--FvSDhiETL- 370 (485)
T PLN02449 294 AGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPIS--FVSEHIETL- 370 (485)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc--ccccchHHH-
Confidence 367888888889999999997644112344455 445 8999999999999999999999984 222222222
Q ss_pred HHHHHHHHHhc-cCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 016721 237 RVLQNIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGK 280 (384)
Q Consensus 237 ~~~~~~~~~~~-~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~ 280 (384)
.++.-..++.. ..+...+..|+...++|.||+++++.|.+.+..
T Consensus 371 ~EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 371 EEIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 22222222211 122225889999999999999999999998864
No 26
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.58 E-value=0.0012 Score=65.83 Aligned_cols=110 Identities=18% Similarity=0.350 Sum_probs=71.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceEEEeee-------cCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHH
Q 016721 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR 237 (384)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMr-------Y~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~ 237 (384)
|.|-....++.++.|.+.|.-... .+.+++. ...|+++++|+++.++|+++|+++|.. |.+-... .+.
T Consensus 207 gd~Y~~~~~~t~~~l~~~l~~~~~--~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~--Fv~D~lE-tl~ 281 (333)
T PRK00035 207 GDPYQQQCEETARLLAEALGLPDE--DYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPG--FVSDHLE-TLE 281 (333)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCC--CeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCe--eeccchh-HHH
Confidence 345444456667777777742111 2455554 368999999999999999999999985 3222211 122
Q ss_pred HHHHHHHHh-ccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHh
Q 016721 238 VLQNIFRED-AYLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (384)
Q Consensus 238 ~~~~~~~~~-~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~ 279 (384)
++....++. ...+...+..++...++|.|+++++++|++.+.
T Consensus 282 ei~~e~~~~~~~~G~~~~~~~~~ln~~~~~i~~l~~~v~~~~~ 324 (333)
T PRK00035 282 EIDIEYREIAEEAGGEEFRRIPCLNDSPEFIEALADLVRENLQ 324 (333)
T ss_pred HHHHHHHHHHHHcCCceEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 222222221 112222588999999999999999999998764
No 27
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.34 E-value=0.00082 Score=56.55 Aligned_cols=60 Identities=25% Similarity=0.471 Sum_probs=48.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecC
Q 016721 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 162 IgggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLy 224 (384)
+|=||+... .+.-++|++.|++++. ..|++|+-=+.|+++++++++.+.|+++|+++||+
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~ 65 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLM 65 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehh
Confidence 366787765 3566777878876543 56888886699999999999999999999999998
No 28
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.23 E-value=0.0019 Score=54.39 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=48.0
Q ss_pred EEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 288 ~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
.+||.+||.+... .+.|. .+.+.+...+. ..+.++|-- -.|++++.+++|.++|+++|.+
T Consensus 2 ~illvgHGSr~~~----~~~~~--------~l~~~l~~~~~-~~v~~~~lE-------~~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 2 AVVFMGHGTDHPS----NAVYA--------ALEYVLREEDP-ANVFVGTVE-------GYPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred eEEEEECCCCchh----hhHHH--------HHHHHHHhcCC-CcEEEEEEc-------CCCCHHHHHHHHHHcCCCEEEE
Confidence 4789999988642 22233 33333322222 356777753 3799999999999999999999
Q ss_pred EeceeeecC
Q 016721 368 IPVRYTLLT 376 (384)
Q Consensus 368 vP~gFVsd~ 376 (384)
+|+.+++=+
T Consensus 62 vPl~L~~G~ 70 (103)
T cd03413 62 MPLMLVAGD 70 (103)
T ss_pred Eehhheecc
Confidence 998877643
No 29
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.12 E-value=0.0023 Score=63.95 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=71.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceEEEee--ecC-----CCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM--rY~-----~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~ 236 (384)
.|.|-....++-+++|.++|.-. + +.+|+ +.+ .|+++++|++|.++|+++|+++|.- |..-...+..
T Consensus 201 ~GdpY~~~~~~t~~~i~~~l~~~--~--~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~g--Fv~D~lETl~ 274 (316)
T PF00762_consen 201 KGDPYPAQCEETARLIAERLGLP--E--WRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPG--FVSDCLETLY 274 (316)
T ss_dssp CT-SHHHHHHHHHHHHHHHTTTS--S--EEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT---SSSSHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHcCCC--c--eEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECCc--cccccHhHHH
Confidence 47788888888888888888422 2 55565 344 5999999999999999999999974 4333344332
Q ss_pred H---HHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHH
Q 016721 237 R---VLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKEL 278 (384)
Q Consensus 237 ~---~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l 278 (384)
+ +..+.+.+.+ .-.+..|+...++|.||+++++.|++.|
T Consensus 275 eidie~re~~~~~G---~~~~~~ip~lN~~~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 275 EIDIEYRELAEEAG---GEEFVRIPCLNDSPEFIEALADLVREHL 316 (316)
T ss_dssp CCCCHHHHHHHHHT---CCEEEE---STT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CceEEEeCCCCCCHHHHHHHHHHHHhCc
Confidence 2 1234444432 2268999999999999999999998875
No 30
>PRK02395 hypothetical protein; Provisional
Probab=97.03 E-value=0.0073 Score=59.15 Aligned_cols=112 Identities=9% Similarity=0.006 Sum_probs=75.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHH-HHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI-RVLQN 241 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~-~~~~~ 241 (384)
|-||+....+.+...++.+.|.++...-.|+.|+--..|+++++++++. .++|+++|+| .+.|.-. +++.+
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~f-----L~~G~H~~~DIp~ 213 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLF-----IADGFHTQEDIPE 213 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeee-----cccCcchHhHHHH
Confidence 6678755444444455555555442222577777668999999998874 5899999999 4455432 34555
Q ss_pred HHHHhc------cCC----CCCEEEecCCCCCHHHHHHHHHHHHHHHhhcC
Q 016721 242 IFREDA------YLS----RLPVSIIRSWYQREGYVNSMADLIQKELGKFQ 282 (384)
Q Consensus 242 ~~~~~~------~~~----~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~ 282 (384)
.+.... ..+ +..+.+.++...+|.+.+.+++++++++...+
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~~ 264 (279)
T PRK02395 214 DMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADVG 264 (279)
T ss_pred HHHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCcc
Confidence 443221 122 34678889999999999999999999886543
No 31
>PRK12435 ferrochelatase; Provisional
Probab=96.70 E-value=0.029 Score=56.07 Aligned_cols=111 Identities=10% Similarity=0.044 Sum_probs=73.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeec------CCCCHHHHHHHHHhc-CCCEEEEEecCCCcccCcHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY------WYPFTEEAVQQIKRD-RITRLVVLPLYPQFSISTTGSSI 236 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY------~~P~i~eaL~~L~~~-G~~~IvvlPLyPqyS~sTtgs~~ 236 (384)
.|.|-....++-++++.++|+-. ++.+.+==|. -.|++.++|++|.++ |+++|+|+|.- |.+-...+..
T Consensus 191 ~GDpY~~q~~~t~~~v~~~l~~~--~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpig--FvsDhlETl~ 266 (311)
T PRK12435 191 AGDPYPDQLEETADLIAEQANVE--HYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVG--FVAEHLEVLY 266 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCC--CCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCc--hhhhhHHHHH
Confidence 46788888888888888887532 3333222232 289999999999887 99999999974 3222222222
Q ss_pred HHHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHh
Q 016721 237 RVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (384)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~ 279 (384)
++.-..++.....+..+..++...++|.||+++++.|++.++
T Consensus 267 -Eldie~~e~a~~~G~~~~r~~~lN~~p~fi~~La~lv~~~~~ 308 (311)
T PRK12435 267 -DNDYECKVVTDEIGAKYYRPEMPNADPLFIDALADVVLKKLK 308 (311)
T ss_pred -HHHHHHHHHHHHcCCcEEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 232212221111123577788999999999999999998764
No 32
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=96.66 E-value=0.012 Score=50.47 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=46.6
Q ss_pred EEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 288 ~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
.+|+.+||..... ....+++.++.+.++. -...+.++|-+ + ..|++++++++|.++|+++|+|
T Consensus 3 ~lvlv~hGS~~~~-------~~~~~~~~~~~l~~~~----~~~~v~~afle-~-----~~P~l~~~l~~l~~~g~~~v~v 65 (126)
T PRK00923 3 GLLLVGHGSRLPY-------NKEVVTKIAEKIKEKH----PFYIVEVGFME-F-----NEPTIPEALKKLIGTGADKIIV 65 (126)
T ss_pred EEEEEeCCCCChH-------HHHHHHHHHHHHHHhC----CCCeEEEEEEE-c-----CCCCHHHHHHHHHHcCCCEEEE
Confidence 6899999986432 2233333444444432 12357788865 1 2599999999999999999999
Q ss_pred Eeceee
Q 016721 368 IPVRYT 373 (384)
Q Consensus 368 vP~gFV 373 (384)
+|+-++
T Consensus 66 vPlfl~ 71 (126)
T PRK00923 66 VPVFLA 71 (126)
T ss_pred Echhhc
Confidence 996543
No 33
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=96.53 E-value=0.02 Score=47.04 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=47.4
Q ss_pred EEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEE
Q 016721 289 IFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI 368 (384)
Q Consensus 289 LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVv 368 (384)
+|+.+||.+... ....+++.++.+.++. + ...+..+|-.. ..|++++++++|.++|+++|+|+
T Consensus 2 ivlv~hGS~~~~-------~~~~~~~l~~~l~~~~---~-~~~v~~afle~------~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 2 LLLVGHGSRDPR-------AAEALEALAERLRERL---P-GDEVELAFLEL------AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred EEEEEcCCCCHH-------HHHHHHHHHHHHHhhC---C-CCcEEEEEEEc------CCCCHHHHHHHHHHcCCCEEEEE
Confidence 688999976431 2233333444444432 1 24677888541 26999999999999999999999
Q ss_pred eceeeecCc
Q 016721 369 PVRYTLLTE 377 (384)
Q Consensus 369 P~gFVsd~~ 377 (384)
|+ |+++|.
T Consensus 65 Pl-fl~~G~ 72 (101)
T cd03416 65 PL-FLLAGG 72 (101)
T ss_pred ee-EeCCCc
Confidence 95 555554
No 34
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=96.49 E-value=0.017 Score=48.66 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=49.2
Q ss_pred EEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 288 ~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
.+|+.+||.+... ..+.+++.++.+.+++ +. .++..+|-+. ..|++++.++++.++|+++|+|
T Consensus 2 a~llv~HGS~~~~-------~~~~~~~l~~~l~~~~---~~-~~v~~afle~------~~P~~~~~l~~l~~~g~~~i~v 64 (117)
T cd03414 2 AVVLVGRGSSDPD-------ANADVAKIARLLEEGT---GF-ARVETAFAAA------TRPSLPEALERLRALGARRVVV 64 (117)
T ss_pred EEEEEcCCCCCHH-------HHHHHHHHHHHHHHhc---CC-CeEEEEEecC------CCCCHHHHHHHHHHcCCCEEEE
Confidence 5788999986321 2344555555555543 21 3577888662 2699999999999999999999
Q ss_pred EeceeeecCc
Q 016721 368 IPVRYTLLTE 377 (384)
Q Consensus 368 vP~gFVsd~~ 377 (384)
+|+-+ .+|.
T Consensus 65 vP~fL-~~G~ 73 (117)
T cd03414 65 LPYLL-FTGV 73 (117)
T ss_pred Eechh-cCCc
Confidence 98644 4443
No 35
>PLN02757 sirohydrochlorine ferrochelatase
Probab=96.49 E-value=0.016 Score=52.14 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=53.5
Q ss_pred CceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCe
Q 016721 285 EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKS 364 (384)
Q Consensus 285 ~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~ 364 (384)
++..||+-+||.+... ....+++.++.+.++. +. ..+.++|-.. .+|++++.|++|.++|+++
T Consensus 12 ~~~~lllvgHGSrd~~-------a~~~~~~la~~l~~~~---~~-~~V~~aFle~------~~Psl~eal~~l~~~g~~~ 74 (154)
T PLN02757 12 DKDGVVIVDHGSRRKE-------SNLMLEEFVAMYKQKT---GH-PIVEPAHMEL------AEPSIKDAFGRCVEQGASR 74 (154)
T ss_pred CCcEEEEEeCCCCCHH-------HHHHHHHHHHHHHhhC---CC-CcEEEEEEec------CCCCHHHHHHHHHHCCCCE
Confidence 3458999999986432 4566666667776654 33 2467888552 3699999999999999999
Q ss_pred EEEEeceeeecC
Q 016721 365 LLAIPVRYTLLT 376 (384)
Q Consensus 365 VvVvP~gFVsd~ 376 (384)
|+|+|+ |++.|
T Consensus 75 vvVvP~-FL~~G 85 (154)
T PLN02757 75 VIVSPF-FLSPG 85 (154)
T ss_pred EEEEEh-hhcCC
Confidence 999995 44444
No 36
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=96.35 E-value=0.054 Score=54.39 Aligned_cols=111 Identities=16% Similarity=0.340 Sum_probs=75.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceEEEee--ec-----CCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RY-----WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aM--rY-----~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~ 236 (384)
.|.|-....++-+++|.++|+-.-.+ +.+++ |+ -.|++.|++++|.++|+++++++|.- |.+-...+ +
T Consensus 201 ~GDpY~~q~~~t~~li~e~lg~~~~~--~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pig--FvsDhlET-L 275 (320)
T COG0276 201 EGDPYPQQCQETTRLIAEALGLPEEE--YDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIG--FVSDHLET-L 275 (320)
T ss_pred cCCchHHHHHHHHHHHHHHcCCCchh--eeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCc--hhhhhHHH-H
Confidence 46687888888888888888622112 22333 33 37999999999999999999999984 32222222 2
Q ss_pred HHHHHHHHHh-ccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHh
Q 016721 237 RVLQNIFRED-AYLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (384)
Q Consensus 237 ~~~~~~~~~~-~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~ 279 (384)
.++....++. ...+......|+...++|.||+++++.|++.+.
T Consensus 276 ~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~lv~~~~~ 319 (320)
T COG0276 276 YEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADLVRELLN 319 (320)
T ss_pred HHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 2333322221 122346789999999999999999999988753
No 37
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=96.29 E-value=0.025 Score=49.12 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=50.1
Q ss_pred EEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCC-CCeeEEEecCc-----cCCCCCCCcHHHHHHHHHhCC
Q 016721 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTLAYQSRV-----GPVKWLKPYTDEVLVELGQKG 361 (384)
Q Consensus 288 ~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~-~~~~lafQSr~-----G~~~WL~P~t~d~L~~L~~~G 361 (384)
.||+.+||.- ||. -.++.+.+.+.+... ++ .++..||-|+. .....-.|++.+.|++|.++|
T Consensus 2 aillv~fGS~--------~~~---~~~~~~~i~~~l~~~-~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGTS--------YPT---AEKTIDAIEDKVRAA-FPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCCC--------CHH---HHHHHHHHHHHHHHH-CCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 5788888853 222 233455555555332 22 36789998854 111245799999999999999
Q ss_pred CCeEEEEeceeee
Q 016721 362 VKSLLAIPVRYTL 374 (384)
Q Consensus 362 vk~VvVvP~gFVs 374 (384)
+++|+|+|.-++.
T Consensus 70 ~~~V~V~Pl~l~~ 82 (127)
T cd03412 70 YTEVIVQSLHIIP 82 (127)
T ss_pred CCEEEEEeCeeEC
Confidence 9999999965443
No 38
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=96.13 E-value=0.03 Score=48.80 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=47.9
Q ss_pred EEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 288 ~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
.||+-+||..... ..+.+++.++.+.++. + .++..||-.. .+|++.+.+++|.++|+++|+|
T Consensus 2 ~lllvgHGSR~~~-------~~~~~~~la~~l~~~~---~--~~v~~afle~------~~P~l~~~l~~l~~~G~~~ivV 63 (125)
T cd03415 2 AIIIITHGSRRNT-------FNEDMEEWAAYLERKL---G--VPVYLTYNEY------AEPNWRDLLNELLSEGYGHIII 63 (125)
T ss_pred EEEEEecCCCChH-------HHHHHHHHHHHHHhcc---C--CceEEEEeec------CCCCHHHHHHHHHHCCCCEEEE
Confidence 5889999975332 3444555555554332 2 2467787552 3699999999999999999999
Q ss_pred EeceeeecC
Q 016721 368 IPVRYTLLT 376 (384)
Q Consensus 368 vP~gFVsd~ 376 (384)
+| -|.+.|
T Consensus 64 vP-lFL~~G 71 (125)
T cd03415 64 AL-AFLGRG 71 (125)
T ss_pred eh-hhccCC
Confidence 96 565554
No 39
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=96.03 E-value=0.088 Score=46.29 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=44.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceEEEeee--c-----CCCCHHHHHHHHHhcCCCEEEEEec-CC
Q 016721 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR--Y-----WYPFTEEAVQQIKRDRITRLVVLPL-YP 225 (384)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMr--Y-----~~P~i~eaL~~L~~~G~~~IvvlPL-yP 225 (384)
|.|=...+.+.+++|.++|.... -++.+|+. . -.|+++++|+++.++|+++|+++|. |.
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~~--~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~ 102 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLPF--DEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFV 102 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccc
Confidence 45667777788888888885322 23555553 2 2899999999999999999999999 63
No 40
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=95.75 E-value=0.057 Score=52.80 Aligned_cols=105 Identities=18% Similarity=0.352 Sum_probs=69.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHH------
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI------ 236 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~------ 236 (384)
|=|+|.... .--.+|+..|++.+. -+|++|.-=+.|.+++++++|++.|+++|.++||. ...|.-.
T Consensus 148 GHGt~h~an--~~Y~~l~~~l~~~~~-~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlM-----lVAGdHa~nDmaG 219 (262)
T PF06180_consen 148 GHGTPHPAN--AAYSALQAMLKKHGY-PNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLM-----LVAGDHAKNDMAG 219 (262)
T ss_dssp E---SCHHH--HHHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEES-----SS--HHHHCCCCS
T ss_pred eCCCCCCcc--HHHHHHHHHHHhCCC-CeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecc-----cccchhhhhhhcC
Confidence 656776543 344677888887641 24899999999999999999999999999999997 4455321
Q ss_pred ---HHHHHHHHHhccCCCCCE-EEecCCCCCHHHHHHHHHHHHHHHh
Q 016721 237 ---RVLQNIFREDAYLSRLPV-SIIRSWYQREGYVNSMADLIQKELG 279 (384)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~l-~~I~~~~~~p~yI~ala~~I~~~l~ 279 (384)
+.+...+++.+ +.+ .+++...++|.+.+.|.++|+++++
T Consensus 220 de~dSWks~L~~~G----~~v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 220 DEEDSWKSRLEAAG----FEVTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp SSTTSHHHHHHHTT-----EEEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CCcchHHHHHHHCC----CEEEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 23444455432 233 3577899999999999999998863
No 41
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=94.63 E-value=0.055 Score=44.57 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEeceeeecC
Q 016721 308 YRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVRYTLLT 376 (384)
Q Consensus 308 Y~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~ 376 (384)
....+++.++.+.+++ + ..+..+|-.. ..|++.+.+++|.++|+++|+|+| -|+++|
T Consensus 8 ~~~~~~~la~~l~~~~---~--~~v~~~fle~------~~P~l~~~l~~l~~~g~~~ivvvP-~fL~~G 64 (105)
T PF01903_consen 8 ANAELEDLADRLRERL---P--VPVEVAFLEF------AEPSLEEALERLVAQGARRIVVVP-YFLFPG 64 (105)
T ss_dssp HHHHHHHHHHHHHHHT---S--SEEEEEESSC------CCSCCHHCCHHHHCCTCSEEEEEE-ESSSSS
T ss_pred HHHHHHHHHHHHHhhc---C--CeEEEEEEec------CCCCHHHHHHHHHHcCCCeEEEEe-eeecCc
Confidence 3455566666666664 3 4678888442 369999999999999999999998 465665
No 42
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=93.71 E-value=0.28 Score=49.65 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=49.5
Q ss_pred eEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEE
Q 016721 287 VMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLL 366 (384)
Q Consensus 287 ~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~Vv 366 (384)
..+|+-+||..... ..+.+++.++.+.++. + .++.++|-.. .+|++++.+++|.++|+++|+
T Consensus 7 ~aiLLvgHGSRdp~-------~~~~~~~La~~l~~~~---~--~~V~~aFLE~------~ePsl~eal~~l~~~G~~~Iv 68 (335)
T PRK05782 7 TAIILIGHGSRRET-------FNSDMEGMANYLKEKL---G--VPIYLTYNEF------AEPNWRSLLNEIIKEGYRRVI 68 (335)
T ss_pred ceEEEEecCCCChH-------HHHHHHHHHHHHHhcc---C--CceEEEEecc------CCCCHHHHHHHHHHCCCCEEE
Confidence 47899999965322 3445555555554432 3 2567777542 369999999999999999998
Q ss_pred EEeceeeecC
Q 016721 367 AIPVRYTLLT 376 (384)
Q Consensus 367 VvP~gFVsd~ 376 (384)
|+| -|.+.|
T Consensus 69 VvP-lFL~~G 77 (335)
T PRK05782 69 IAL-AFLGRG 77 (335)
T ss_pred Eec-ccccCC
Confidence 888 566655
No 43
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=92.20 E-value=0.45 Score=42.67 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEEece
Q 016721 305 GDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAIPVR 371 (384)
Q Consensus 305 GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVvP~g 371 (384)
|.|=....++.++.+.++|...+ .++.+. +|-.-| .|+++|+|++|.++|+++|+++|.-
T Consensus 63 ~SPL~~~t~~q~~~l~~~L~~~~--~~~~v~----~amry~-~P~i~~~l~~l~~~g~~~iivlPl~ 122 (159)
T cd03411 63 GSPLNEITRAQAEALEKALDERG--IDVKVY----LAMRYG-PPSIEEALEELKADGVDRIVVLPLY 122 (159)
T ss_pred CCccHHHHHHHHHHHHHHHhccC--CCcEEE----ehHhcC-CCCHHHHHHHHHHcCCCEEEEEECC
Confidence 35555555667777888874322 122222 221223 7999999999999999999999953
No 44
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=89.59 E-value=0.67 Score=44.91 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=47.6
Q ss_pred EEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 288 MIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 288 ~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
.+|...||.+... +.+..+..++.+.++. -...+..+|- +-.+|++++.++.|..+|+++|+|
T Consensus 4 ~~llvgHGsr~p~-------~~~~~~~~a~~~~~~~----~~~~v~~~f~------e~~~P~l~~~~~al~~~G~~~ivv 66 (245)
T COG2138 4 ALLLVGHGSRLPR-------GREVAEAIAARLEERG----DFPPVRVAFL------ELAEPSLREALQALVARGVDRIVV 66 (245)
T ss_pred ceeeeecCCCCcc-------HHHHHHHHHHHHHhhc----CCccchhHHH------HhcCCCHHHHHHHHHhcCCCeEEE
Confidence 5788999977443 3444444444444442 2234666662 234699999999999999999999
Q ss_pred EeceeeecC
Q 016721 368 IPVRYTLLT 376 (384)
Q Consensus 368 vP~gFVsd~ 376 (384)
+|+ |++.+
T Consensus 67 VPl-fl~~g 74 (245)
T COG2138 67 VPL-FLAAG 74 (245)
T ss_pred eeh-hhccC
Confidence 995 55444
No 45
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=89.57 E-value=1.8 Score=43.64 Aligned_cols=112 Identities=18% Similarity=0.319 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCC---CceEEEe-eecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCc--HHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNL---PVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIST--TGSSIR 237 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~---~~~V~~a-MrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sT--tgs~~~ 237 (384)
.|.|-...-.+-.+.+-++|+.++. -|+-.+| +-.-.|..+|+++.|-+.|.+.++++|.. |.+-. |-..+|
T Consensus 244 ~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIa--FvSeHIETL~EiD 321 (395)
T KOG1321|consen 244 AGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIA--FVSEHIETLHEID 321 (395)
T ss_pred cCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeeh--hhhHHHHHHHHhh
Confidence 3566666666667777778876542 1222222 24457999999999999999999999996 11111 111122
Q ss_pred --HHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 016721 238 --VLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (384)
Q Consensus 238 --~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (384)
..+++.++ . . -.++-+.+...+|.||+++|+.+.+.|+..
T Consensus 322 ~ey~e~a~k~-g-v--e~~~Rv~sln~~p~fI~~lADlV~ehL~s~ 363 (395)
T KOG1321|consen 322 IEYIEEALKK-G-V--ENWKRVESLNGNPTFIEGLADLVAEHLKSN 363 (395)
T ss_pred HHHHHHHHHH-h-h--hhheeccCCCCCccHHHHHHHHHHHhhhhh
Confidence 12222222 1 1 137778899999999999999999998754
No 46
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=88.50 E-value=6.8 Score=37.71 Aligned_cols=94 Identities=16% Similarity=0.341 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHH---------HHHHHHHHHHhc
Q 016721 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS---------IRVLQNIFREDA 247 (384)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~---------~~~~~~~~~~~~ 247 (384)
..|.-.|.+.|-+ +|++|--=+.|.+..+|+.|.+.|++++-++||- .+.|-- -+.+.+.+.+.+
T Consensus 156 acLd~~~~~~~f~-~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlM-----lvAG~Ha~nDMasddedswk~il~~~G 229 (265)
T COG4822 156 ACLDHVLDEYGFD-NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLM-----LVAGDHAKNDMASDDEDSWKNILEKNG 229 (265)
T ss_pred HHHHHHHHhcCCC-ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeE-----EeechhhhhhhcccchHHHHHHHHhCC
Confidence 3455566655421 5899999999999999999999999999999986 233321 133445555433
Q ss_pred cCCCCC-EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 016721 248 YLSRLP-VSIIRSWYQREGYVNSMADLIQKELGK 280 (384)
Q Consensus 248 ~~~~~~-l~~I~~~~~~p~yI~ala~~I~~~l~~ 280 (384)
.+ -.++......|.+.+.+.++|+.++..
T Consensus 230 ----~~v~~~l~GLGE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 230 ----FKVEVYLHGLGENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred ----ceeEEEeecCCCcHHHHHHHHHHHHHHHhh
Confidence 23 456788999999999999999999865
No 47
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.04 E-value=5.1 Score=42.11 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=76.0
Q ss_pred HHHHHHhcCCCEEEEEecCC-CcccCcHH--HHHHHHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcC
Q 016721 206 AVQQIKRDRITRLVVLPLYP-QFSISTTG--SSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQ 282 (384)
Q Consensus 206 aL~~L~~~G~~~IvvlPLyP-qyS~sTtg--s~~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~ 282 (384)
-+++|.++|+++|+++-.-- .|-.-.-+ ..+-++-+.+.+.....++++..+.+..-.+.+|+++++. +
T Consensus 181 ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~--------~ 252 (437)
T COG0621 181 EVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAET--------P 252 (437)
T ss_pred HHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcC--------C
Confidence 34567889999999987621 01111100 1122222223321112234455666777777888777731 0
Q ss_pred CCCceEEEEeeCCCchhhhccCCCc---------h-HHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHH
Q 016721 283 KPEEVMIFFSAHGVPVSYVEKAGDP---------Y-RDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDE 352 (384)
Q Consensus 283 ~~~~~~LLFSaHGlP~~~v~~~GDp---------Y-~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d 352 (384)
.|.=..| ||+.. |+. | .++..+.++.+.+..+..-+..++.++| |+| .+-+.++
T Consensus 253 -----kv~~~lH-lPvQs----Gsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGF-----PgE-TeedFe~ 316 (437)
T COG0621 253 -----KVCPHLH-LPVQS----GSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGF-----PGE-TEEDFEE 316 (437)
T ss_pred -----ccccccc-Ccccc----CCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEEC-----CCC-CHHHHHH
Confidence 1111222 45432 443 5 4555555566665542211112333333 555 6789999
Q ss_pred HHHHHHhCCCCeEEEEece
Q 016721 353 VLVELGQKGVKSLLAIPVR 371 (384)
Q Consensus 353 ~L~~L~~~Gvk~VvVvP~g 371 (384)
+++-+.+-+..++-++++|
T Consensus 317 tl~lv~e~~fd~~~~F~YS 335 (437)
T COG0621 317 TLDLVEEVRFDRLHVFKYS 335 (437)
T ss_pred HHHHHHHhCCCEEeeeecC
Confidence 9998888899999998865
No 48
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=82.77 E-value=44 Score=34.57 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCC-EEEEEecCCCcccCcHHHHHHHHHHHHHHh
Q 016721 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT-RLVVLPLYPQFSISTTGSSIRVLQNIFRED 246 (384)
Q Consensus 171 ~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~-~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~ 246 (384)
++++.+.++-+.--+.|+++ |.-|+-|--=.-|+.|.+...+|++ ++.+-.-+|-+-.-.-...-+.+++.+++.
T Consensus 31 id~~~~~~~i~~aie~GiNy-idTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl 106 (391)
T COG1453 31 IDEENANETIDYAIEHGINY-IDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPVKDREDMERIFNEQLEKL 106 (391)
T ss_pred ccHHHHHHHHHHHHHcCCce-EeecccccCCCchHHHHHHhhhcccceEEEEeecCCccccCHHHHHHHHHHHHHHh
Confidence 44554444433333467654 6677777222233444444444554 444444466422222233333455555543
No 49
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=82.32 E-value=42 Score=31.13 Aligned_cols=126 Identities=18% Similarity=0.277 Sum_probs=69.8
Q ss_pred HHHHHhcCCCEEEEEecCCCcccC--cHHHHHHHHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 016721 207 VQQIKRDRITRLVVLPLYPQFSIS--TTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKP 284 (384)
Q Consensus 207 L~~L~~~G~~~IvvlPLyPqyS~s--Ttgs~~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~ 284 (384)
+..+.+.|.+=+.++-+.|..... .-+...+.+.+..+.. ++++.++.--.+.+.|.+.+.+.+++..++ + .
T Consensus 16 l~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~l----gipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g-~ 89 (194)
T cd01994 16 LYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAM----GIPLIRIEISGEEEDEVEDLKELLRKLKEE-G-V 89 (194)
T ss_pred HHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHc----CCcEEEEeCCCCchHHHHHHHHHHHHHHHc-C-C
Confidence 445555776544455555542211 1111233343333332 355666553347889999998888776443 2 1
Q ss_pred CceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCe
Q 016721 285 EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKS 364 (384)
Q Consensus 285 ~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~ 364 (384)
+ .+++ ||-+-+....-.+.+.+++ |+ ++.+ | =|-.| .++.++++.+.|.+.
T Consensus 90 ~--~vv~-------------G~i~sd~~~~~~e~~~~~~---gl--------~~~~-P-LW~~~-~~~ll~e~~~~g~~~ 140 (194)
T cd01994 90 D--AVVF-------------GAILSEYQRTRVERVCERL---GL--------EPLA-P-LWGRD-QEELLREMIEAGFKA 140 (194)
T ss_pred C--EEEE-------------CccccHHHHHHHHHHHHHc---CC--------EEEe-c-ccCCC-HHHHHHHHHHcCCeE
Confidence 2 3433 6666555566667777777 66 2321 2 26554 455888888888876
Q ss_pred EEE
Q 016721 365 LLA 367 (384)
Q Consensus 365 VvV 367 (384)
+++
T Consensus 141 ~iv 143 (194)
T cd01994 141 III 143 (194)
T ss_pred EEE
Confidence 654
No 50
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=69.83 E-value=20 Score=31.57 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEec
Q 016721 260 WYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQS 338 (384)
Q Consensus 260 ~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQS 338 (384)
-+.++.-.+.+.+.|+..++.. .|+ ..||+|+||-| +-|-.|. ++.|++.|-..|...++..-|-+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~-KpLVlSfHG~t-----GtGKn~v------~~liA~~ly~~G~~S~~V~~f~~ 92 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPR-KPLVLSFHGWT-----GTGKNFV------SRLIAEHLYKSGMKSPFVHQFIA 92 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCC-CCEEEEeecCC-----CCcHHHH------HHHHHHHHHhcccCCCceeeecc
Confidence 4556677788888888888653 344 46999999977 3466676 56677777555765555555544
No 51
>PRK10481 hypothetical protein; Provisional
Probab=69.53 E-value=42 Score=32.20 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=76.6
Q ss_pred ceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEec--CCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEecCCCCCHHHH
Q 016721 190 VNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL--YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYV 267 (384)
Q Consensus 190 ~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPL--yPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI 267 (384)
-.|.++=++-.|.+.+.+++|.++|++-++++.. ||-...... .-..|.+.| +.++
T Consensus 66 ~~v~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~----------------~l~~P~~~i------~~lv 123 (224)
T PRK10481 66 QQVHVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNA----------------ILLEPSRIL------PPLV 123 (224)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCc----------------cccCchhhH------HHHH
Confidence 3577888888899999999999999999999886 343211000 000122332 4455
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCC
Q 016721 268 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLK 347 (384)
Q Consensus 268 ~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~ 347 (384)
.|+. ..+...++ -||+.|+.+..+...+. |+ +..++-.| +|..
T Consensus 124 ~Al~-----------~g~riGVi---------------tP~~~qi~~~~~kw~~~----G~--~v~~~~as-----py~~ 166 (224)
T PRK10481 124 AAIV-----------GGHQVGVI---------------VPVEEQLAQQAQKWQVL----QK--PPVFALAS-----PYHG 166 (224)
T ss_pred HHhc-----------CCCeEEEE---------------EeCHHHHHHHHHHHHhc----CC--ceeEeecC-----CCCC
Confidence 4443 11223332 47888887776555543 54 22222222 2333
Q ss_pred C--cHHHHHHHHHhCCCCeEEEEeceeee
Q 016721 348 P--YTDEVLVELGQKGVKSLLAIPVRYTL 374 (384)
Q Consensus 348 P--~t~d~L~~L~~~Gvk~VvVvP~gFVs 374 (384)
+ .+.+..++|.+.|.+-|++-|.||..
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~ 195 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGYHQ 195 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCcCH
Confidence 3 46667777878899999999999875
No 52
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=68.90 E-value=30 Score=30.28 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=64.0
Q ss_pred eEEEEEccCCCCCcchHHHHHHhhcCCC--CcccCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHHHHH
Q 016721 100 VGVLLLNLGGPDTLHDVQPFLFNLFADP--DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQ 177 (384)
Q Consensus 100 ~aVLLvNlGtP~s~~dV~~fL~~~~~D~--~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~qa~ 177 (384)
.-|+|.+.|+ +--+-=..|...||.+. .|++++.. + ....++...+ .+....|+ -|-|..-+.....
T Consensus 3 ~~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~----~-s~e~~v~aa~----e~~adii~-iSsl~~~~~~~~~ 71 (132)
T TIGR00640 3 PRILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLF----Q-TPEEIARQAV----EADVHVVG-VSSLAGGHLTLVP 71 (132)
T ss_pred CEEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCC----C-CHHHHHHHHH----HcCCCEEE-EcCchhhhHHHHH
Confidence 3578888888 54444446677777544 77777531 1 2334443221 22333333 4667777777788
Q ss_pred HHHHHHHhcCC-CceEEEeeecCCCCHHHHHHHHHhcCCCEEE
Q 016721 178 ALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (384)
Q Consensus 178 ~L~~~L~~~g~-~~~V~~aMrY~~P~i~eaL~~L~~~G~~~Iv 219 (384)
.+.++|++.+. ++.|..| |.+. .+-.+++++.|+++++
T Consensus 72 ~~~~~L~~~g~~~i~vivG---G~~~-~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 72 ALRKELDKLGRPDILVVVG---GVIP-PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHhcCCCCCEEEEe---CCCC-hHhHHHHHHCCCCEEE
Confidence 88888988765 5667665 2222 3446678889999875
No 53
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=67.81 E-value=31 Score=32.84 Aligned_cols=87 Identities=15% Similarity=0.306 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCC-CCeeEEEecCccC-----
Q 016721 269 SMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTLAYQSRVGP----- 342 (384)
Q Consensus 269 ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~-~~~~lafQSr~G~----- 342 (384)
++...+++.++..+. + .+++-.||- +..+.+.+..+++ +...+ |++ ..+..+|.|....
T Consensus 3 ~~~~~~~~~l~~~~~--~-~vlvfVHGy--------n~~f~~a~~r~aq-l~~~~---~~~~~~i~FsWPS~g~~~~Y~~ 67 (233)
T PF05990_consen 3 AFQAQLNQRLAKSPD--K-EVLVFVHGY--------NNSFEDALRRAAQ-LAHDL---GFPGVVILFSWPSDGSLLGYFY 67 (233)
T ss_pred HHHHHHHHHHhhCCC--C-eEEEEEeCC--------CCCHHHHHHHHHH-HHHHh---CCCceEEEEEcCCCCChhhhhh
Confidence 455666677765432 2 355567773 3345555665554 44444 554 2467888886432
Q ss_pred ----CCCCCCcHHHHHHHHHhC-CCCeEEEEec
Q 016721 343 ----VKWLKPYTDEVLVELGQK-GVKSLLAIPV 370 (384)
Q Consensus 343 ----~~WL~P~t~d~L~~L~~~-Gvk~VvVvP~ 370 (384)
..|..|.+.+.|+.|.+. |.++|.++.=
T Consensus 68 d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaH 100 (233)
T PF05990_consen 68 DRESARFSGPALARFLRDLARAPGIKRIHILAH 100 (233)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCceEEEEEe
Confidence 347888999999999988 8999998863
No 54
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.39 E-value=1.5e+02 Score=28.95 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=88.3
Q ss_pred ceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCc-c---------cCcHHHHHHHHHHHHHHhccCCCCCEEEecC
Q 016721 190 VNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF-S---------ISTTGSSIRVLQNIFREDAYLSRLPVSIIRS 259 (384)
Q Consensus 190 ~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqy-S---------~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~ 259 (384)
-+|.+|+-=.-|...+-.++.++.|-+=++=+||-|.- - ..+.+...+.+.+++.+..+...+.=+.-..
T Consensus 53 ~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs~ 132 (250)
T COG2861 53 PEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLNNHMGSR 132 (250)
T ss_pred ccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeehhhhhhh
Confidence 44777877777888888999999999999999998862 1 2223344555555554432211122222234
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCC--CCceEEEEeeCCCchhhhccCCCchH------------HHHHHHHHHHHHHHhh
Q 016721 260 WYQREGYVNSMADLIQKELGKFQK--PEEVMIFFSAHGVPVSYVEKAGDPYR------------DQMEECIYLIMQRLKD 325 (384)
Q Consensus 260 ~~~~p~yI~ala~~I~~~l~~~~~--~~~~~LLFSaHGlP~~~v~~~GDpY~------------~q~~~T~~~i~~~L~~ 325 (384)
|-.++..-+.+. ++|++.+- -|+. -++||++-+...+-|=||. ..+..-.+...+....
T Consensus 133 ~tsn~~aM~~~m----~~Lk~r~l~flDs~---T~a~S~a~~iAk~~gVp~~~rdvfLD~e~~~~~V~kql~~~~~~Ark 205 (250)
T COG2861 133 FTSNEDAMEKLM----EALKERGLYFLDSG---TIANSLAGKIAKEIGVPVIKRDVFLDDEDTEAAVLKQLDAAEKLARK 205 (250)
T ss_pred hcCcHHHHHHHH----HHHHHCCeEEEccc---ccccchhhhhHhhcCCceeeeeeeecCcCCHHHHHHHHHHHHHHHHh
Confidence 556666555555 44433210 0110 2778776665432232321 1222222222221111
Q ss_pred cCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhC-CCCeEEEEecee
Q 016721 326 RGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQK-GVKSLLAIPVRY 372 (384)
Q Consensus 326 ~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~-Gvk~VvVvP~gF 372 (384)
.|- .++ +|.. .|.|.++|+++..+ +.+.|-+||++=
T Consensus 206 ~G~----ai~----IGh~---~~~Tv~vl~~~~~~l~~~gIelV~~s~ 242 (250)
T COG2861 206 NGS----AIG----IGHP---HKNTVAVLQQWLDELPARGIELVPVSA 242 (250)
T ss_pred cCc----eEE----ecCC---chhHHHHHHHHHHhCCCCCeEEecHHH
Confidence 121 111 2433 69999999887654 557899999863
No 55
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=63.10 E-value=28 Score=30.98 Aligned_cols=152 Identities=19% Similarity=0.195 Sum_probs=77.5
Q ss_pred HHHHHHHHHHh-cCC--CceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCC
Q 016721 175 QAQALKTALEA-KNL--PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSR 251 (384)
Q Consensus 175 qa~~L~~~L~~-~g~--~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~ 251 (384)
=|++|++.|.+ .+. ++.|.=.|.+..|.+...+.+.=..-+++. +|| +.+.+.... .
T Consensus 4 aA~Al~eal~~~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y~~~~~~~---~ly------------~~~y~~~~~----~- 63 (169)
T PF06925_consen 4 AARALAEALERRRGPDAEVEVVDFLEEASPWLRRLIRKAYLFMVRHA---PLY------------GWLYRWTDK----R- 63 (169)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEehHHhhChHHHHHHHHHHHHHHHHH---HHH------------HHHHHhcCC----C-
Confidence 35778888876 344 444446788888887776665422212210 111 111111100 0
Q ss_pred CCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCC
Q 016721 252 LPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND 331 (384)
Q Consensus 252 ~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~ 331 (384)
. . ...-...+...+...+.+.++++ +|| +|+|-|=+|... .+..+.++= ++.+-
T Consensus 64 ~-~----~~~~~~~~~~~~~~~l~~~l~~~-~PD---~IIsThp~~~~~--------------~l~~lk~~~---~~~~~ 117 (169)
T PF06925_consen 64 R-P----RSKFLSALSRLFARRLIRLLREF-QPD---LIISTHPFPAQV--------------PLSRLKRRG---RLPNI 117 (169)
T ss_pred c-c----chHHHHHHHHHHHHHHHHHHhhc-CCC---EEEECCcchhhh--------------HHHHHHHhh---cccCC
Confidence 0 0 01111234455555666666655 344 788999776443 012232221 12111
Q ss_pred eeEEEecCcc--CCCCCCCcH-------HHHHHHHHhCCCCeEEEEecee
Q 016721 332 HTLAYQSRVG--PVKWLKPYT-------DEVLVELGQKGVKSLLAIPVRY 372 (384)
Q Consensus 332 ~~lafQSr~G--~~~WL~P~t-------~d~L~~L~~~Gvk~VvVvP~gF 372 (384)
-.++.=.-++ ..-|+.|.+ +++-++|.+.|+..--|...|+
T Consensus 118 p~~tvvTD~~~~H~~W~~~~~D~y~Vase~~~~~l~~~Gi~~~~I~vtGi 167 (169)
T PF06925_consen 118 PVVTVVTDFDTVHPFWIHPGVDRYFVASEEVKEELIERGIPPERIHVTGI 167 (169)
T ss_pred cEEEEEcCCCCCCcCeecCCCCEEEECCHHHHHHHHHcCCChhHEEEeCc
Confidence 2234445563 567999964 6788888889987655555553
No 56
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=62.92 E-value=12 Score=37.37 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcC-CCCceEEEEeeCCCchhhhc---cCC------
Q 016721 236 IRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQ-KPEEVMIFFSAHGVPVSYVE---KAG------ 305 (384)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~-~~~~~~LLFSaHGlP~~~v~---~~G------ 305 (384)
++.+++++++++ .++.+...-=-++.-++.|.+.=.-+++... -|++..+||||||+|....+ ++|
T Consensus 20 I~ive~al~~~g----~pIyv~~eIVHN~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a~~r~l~v~DA 95 (294)
T COG0761 20 IQIVERALEEYG----APIYVRHEIVHNRYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEAKERGLKVIDA 95 (294)
T ss_pred HHHHHHHHHHcC----CCeEEEeccccCHHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHHHHCCCEEEec
Confidence 444555555532 2344444444444455544432111122111 13455799999999987532 233
Q ss_pred -CchHHHHHHHHHHHHHH
Q 016721 306 -DPYRDQMEECIYLIMQR 322 (384)
Q Consensus 306 -DpY~~q~~~T~~~i~~~ 322 (384)
-|+...++..++...++
T Consensus 96 TCPlVtKvh~~v~~~~~~ 113 (294)
T COG0761 96 TCPLVTKVHKEVERYARE 113 (294)
T ss_pred CCCcchHHHHHHHHHHhC
Confidence 45766666666555543
No 57
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=62.27 E-value=1.5e+02 Score=28.40 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHH
Q 016721 262 QREGYVNSMADLI 274 (384)
Q Consensus 262 ~~p~yI~ala~~I 274 (384)
..+.|.+.+.+.+
T Consensus 69 ~~e~~~e~l~~~l 81 (223)
T TIGR00290 69 TEEDEVEELKGIL 81 (223)
T ss_pred CccHHHHHHHHHH
Confidence 3455555555444
No 58
>PRK06886 hypothetical protein; Validated
Probab=61.44 E-value=1.3e+02 Score=30.33 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=13.0
Q ss_pred CcHHHHHHHHHhCCCCeEEEEec
Q 016721 348 PYTDEVLVELGQKGVKSLLAIPV 370 (384)
Q Consensus 348 P~t~d~L~~L~~~Gvk~VvVvP~ 370 (384)
.+..+.++.|++.|+ .|+..|.
T Consensus 223 ~~~~~~i~~La~agi-~Vv~~P~ 244 (329)
T PRK06886 223 EYRYRLYQKMREADM-MVIACPM 244 (329)
T ss_pred hhHHHHHHHHHHcCC-eEEECch
Confidence 455666666666664 4555554
No 59
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=57.30 E-value=1.4e+02 Score=28.11 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=50.2
Q ss_pred CceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcc----------cCcHHHHHHHHHHHHHHhccCCCCCEEEec
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFS----------ISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS----------~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~ 258 (384)
+++|.+|.-=..|+..+..+..++.|.+=++-+||=|+-- ..+-....+.+..++........+.=+.-.
T Consensus 20 p~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS 99 (213)
T PF04748_consen 20 PFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGS 99 (213)
T ss_dssp STTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-C
T ss_pred CCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCc
Confidence 5668888877779999999999999999999999988751 122222223333443332211122333444
Q ss_pred CCCCCHHHHHHHHHHHH
Q 016721 259 SWYQREGYVNSMADLIQ 275 (384)
Q Consensus 259 ~~~~~p~yI~ala~~I~ 275 (384)
.+..++.-.+.+.+.++
T Consensus 100 ~~T~~~~~m~~vl~~l~ 116 (213)
T PF04748_consen 100 RFTSDREAMRWVLEVLK 116 (213)
T ss_dssp CHHC-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 57777777776664443
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=52.73 E-value=12 Score=35.67 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=37.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecC
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLy 224 (384)
|-||.++.+|++--+.| | +| +|.|.||-.+++|+++|++.|+++.=|
T Consensus 9 G~gsR~~plT~~tpK~L---l-------kV-----~g~plIErqI~~L~e~gI~dI~IVvGY 55 (231)
T COG4750 9 GLGSRFVPLTQSTPKSL---L-------KV-----NGEPLIERQIEQLREAGIDDITIVVGY 55 (231)
T ss_pred ccccccccccccCChHH---H-------Hh-----cCcccHHHHHHHHHHCCCceEEEEeee
Confidence 66787777776655543 2 13 578999999999999999999999877
No 61
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.22 E-value=2.1e+02 Score=27.03 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=69.8
Q ss_pred cCCCCHHHHHHHHHhcCCCEEEEEecCCC-cccCcHHHHHHHHHHHHHHhccCCCCCEEEecC----C-----CCCHHHH
Q 016721 198 YWYPFTEEAVQQIKRDRITRLVVLPLYPQ-FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS----W-----YQREGYV 267 (384)
Q Consensus 198 Y~~P~i~eaL~~L~~~G~~~IvvlPLyPq-yS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~----~-----~~~p~yI 267 (384)
|+.-.+++.++.+++.|++.|=+..-+|+ |....+....+.+.+.+++.+ +.+..+.. | ..++...
T Consensus 10 ~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~g----l~v~s~~~~~~~~~~~~~~~~~~~r 85 (275)
T PRK09856 10 HQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ----MPIIGYTPETNGYPYNMMLGDEHMR 85 (275)
T ss_pred heeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcC----CeEEEecCcccCcCccccCCCHHHH
Confidence 44446888888888888887776543332 211112223455555555432 23332221 1 1233333
Q ss_pred HHHHHHHHHHH---hhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCC
Q 016721 268 NSMADLIQKEL---GKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVK 344 (384)
Q Consensus 268 ~ala~~I~~~l---~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~ 344 (384)
++..+.+++.+ +.++- + ..+++..|. .... ..+...+...+..+.+++.... ..+.+++-.......
T Consensus 86 ~~~~~~~~~~i~~a~~lGa-~-~i~~~~~~~---~~~~-~~~~~~~~~~~~l~~l~~~a~~----~gv~l~iE~~~~~~~ 155 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNA-G-YTLISAAHA---GYLT-PPNVIWGRLAENLSELCEYAEN----IGMDLILEPLTPYES 155 (275)
T ss_pred HHHHHHHHHHHHHHHHhCC-C-EEEEcCCCC---CCCC-CHHHHHHHHHHHHHHHHHHHHH----cCCEEEEecCCCCcc
Confidence 33333343333 22332 1 222222221 1110 1122334444555666665532 246777776432233
Q ss_pred CCCCcHHHHHHHHHhCCCCeE
Q 016721 345 WLKPYTDEVLVELGQKGVKSL 365 (384)
Q Consensus 345 WL~P~t~d~L~~L~~~Gvk~V 365 (384)
|.-++.++.++-+.+-+-.++
T Consensus 156 ~~~~t~~~~~~l~~~~~~~~v 176 (275)
T PRK09856 156 NVVCNANDVLHALALVPSPRL 176 (275)
T ss_pred cccCCHHHHHHHHHHcCCCcc
Confidence 455666665555554444444
No 62
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=52.03 E-value=26 Score=35.74 Aligned_cols=94 Identities=23% Similarity=0.244 Sum_probs=63.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHH
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~ 242 (384)
|.|+-|...|...++- -|.+| .+|-|.--++.|.+.|+++|+++.-|= ..|..+.+.+.
T Consensus 18 G~GTRLrPLT~t~pKP------------lVpfg---n~pmI~hqieal~nsGi~~I~la~~y~------s~sl~~~~~k~ 76 (371)
T KOG1322|consen 18 GYGTRLRPLTLTRPKP------------LVPFG---NKPMILHQIEALINSGITKIVLATQYN------SESLNRHLSKA 76 (371)
T ss_pred CCCceeeceeccCCCc------------ccccC---cchhhHHHHHHHHhCCCcEEEEEEecC------cHHHHHHHHHH
Confidence 3466676666544431 15556 569999999999999999999999872 23344444444
Q ss_pred HHHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcC
Q 016721 243 FREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQ 282 (384)
Q Consensus 243 ~~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~ 282 (384)
... ...+.++-+....|.--+-=++.++++|..+.
T Consensus 77 y~~-----~lgVei~~s~eteplgtaGpl~laR~~L~~~~ 111 (371)
T KOG1322|consen 77 YGK-----ELGVEILASTETEPLGTAGPLALARDFLWVFE 111 (371)
T ss_pred hhh-----ccceEEEEEeccCCCcccchHHHHHHHhhhcC
Confidence 321 23477777777777777777888899988764
No 63
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=45.04 E-value=2.3e+02 Score=25.33 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCEEEEEecCCCcc-----cCcHHHHHHHHHHHHHHhccCCCCCEEEec--CCCCCHHHHHHHHHHHHHHH
Q 016721 206 AVQQIKRDRITRLVVLPLYPQFS-----ISTTGSSIRVLQNIFREDAYLSRLPVSIIR--SWYQREGYVNSMADLIQKEL 278 (384)
Q Consensus 206 aL~~L~~~G~~~IvvlPLyPqyS-----~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~--~~~~~p~yI~ala~~I~~~l 278 (384)
.+++..+. +++|+++|-.-+.. ..|.+.-++.+.+++.+. +.+.+..++ ....+|.--+.|++.|+..+
T Consensus 18 li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~---~~~~v~~~~~~d~~~~~~~w~~w~~~v~~~v 93 (158)
T cd02167 18 LIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPDQ---ENIVVHTLNEPDIPEYPNGWDIWSNRVKTLI 93 (158)
T ss_pred HHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCCCchhHHHHHHHHHHHH
Confidence 44444443 69999999754433 346666566677766542 223343333 44345556777788888887
Q ss_pred hhcCCCCceEEEEeeCC
Q 016721 279 GKFQKPEEVMIFFSAHG 295 (384)
Q Consensus 279 ~~~~~~~~~~LLFSaHG 295 (384)
.+... .+..++|+.|-
T Consensus 94 ~~~~~-~~~~~vf~~~~ 109 (158)
T cd02167 94 AENTR-CRPDIVFTAEE 109 (158)
T ss_pred hhhcC-CCCCEEEEccC
Confidence 64311 12246776654
No 64
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=42.80 E-value=1.6e+02 Score=28.83 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=34.8
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHH
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~ 245 (384)
.++|..|- +.++++++++.. .+.|++-++++| |.|...+-...++.+.+..+.
T Consensus 73 ~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 73 KVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIIDS 128 (293)
T ss_pred CCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHHh
Confidence 45565554 567888887754 457999999888 667666655555555555443
No 65
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.38 E-value=45 Score=32.93 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhcCCCCCe---eEEEecCccCCCC---CCCcHHHHHHHHHhCCCCeEEEEeceeeecC
Q 016721 315 CIYLIMQRLKDRGINNDH---TLAYQSRVGPVKW---LKPYTDEVLVELGQKGVKSLLAIPVRYTLLT 376 (384)
Q Consensus 315 T~~~i~~~L~~~g~~~~~---~lafQSr~G~~~W---L~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~ 376 (384)
.+..+++.+.+.|++-+. ...||...|.=.| .-|+..+.+++|.++|+|-++.+-|.+..|.
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s 98 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS 98 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC
Confidence 344444444444775332 2468877664333 4589999999999999998888888665443
No 66
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=42.14 E-value=2.9e+02 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=7.6
Q ss_pred CCCCCeeEEEecC
Q 016721 327 GINNDHTLAYQSR 339 (384)
Q Consensus 327 g~~~~~~lafQSr 339 (384)
|+ +.+.++.||-
T Consensus 118 G~-~rvslGvQS~ 129 (375)
T PRK05628 118 GF-TRVSLGMQSA 129 (375)
T ss_pred CC-CEEEEecccC
Confidence 55 4667777773
No 67
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.59 E-value=3.5e+02 Score=26.25 Aligned_cols=107 Identities=7% Similarity=-0.033 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHhcCCCEEEE-EecCCCcccC----cHHHHHHHHHHHHHHhccCC-CCCEEEecCCCCCHHHHHHHHHH
Q 016721 200 YPFTEEAVQQIKRDRITRLVV-LPLYPQFSIS----TTGSSIRVLQNIFREDAYLS-RLPVSIIRSWYQREGYVNSMADL 273 (384)
Q Consensus 200 ~P~i~eaL~~L~~~G~~~Ivv-lPLyPqyS~s----Ttgs~~~~~~~~~~~~~~~~-~~~l~~I~~~~~~p~yI~ala~~ 273 (384)
.|..+ -++...+.|++.|-+ +|..+.+... |.....+.+.+.++..+..+ .+.+.....|...+.++..+++.
T Consensus 71 r~~~~-di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMD-DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHH-HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 34444 355556679987654 4555543332 23344455554444322222 23455566777788888777755
Q ss_pred HHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHH
Q 016721 274 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (384)
Q Consensus 274 I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L 323 (384)
+.+. + .+ .+.+ .+.-|--++.++.+.++.+.+.+
T Consensus 150 ~~~~----g-~~--~i~l---------~Dt~G~~~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 150 VDKL----G-VN--RVGI---------ADTVGIATPRQVYELVRTLRGVV 183 (262)
T ss_pred HHHc----C-CC--EEEE---------CCcCCCCCHHHHHHHHHHHHHhc
Confidence 5443 2 12 2222 22346668888888888887764
No 68
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.88 E-value=3.3e+02 Score=25.46 Aligned_cols=103 Identities=10% Similarity=0.151 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCEEEEEecCCC--ccc----CcHHHHHHHHHHHHHHhccCC-CCCEEEecCCC--CCHHHHHHHHHHH
Q 016721 204 EEAVQQIKRDRITRLVVLPLYPQ--FSI----STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWY--QREGYVNSMADLI 274 (384)
Q Consensus 204 ~eaL~~L~~~G~~~IvvlPLyPq--yS~----sTtgs~~~~~~~~~~~~~~~~-~~~l~~I~~~~--~~p~yI~ala~~I 274 (384)
++.++.+.+.|++.|.+. +... +.. .+....++.+.+.++.....+ .+.+.+..-+. .++.++..+++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 777888888898775443 3211 000 111123444544444322222 12333445565 8888888777655
Q ss_pred HHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHH
Q 016721 275 QKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (384)
Q Consensus 275 ~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L 323 (384)
.+. + .+ .+-+ .+..|..++.++.+.++.+.+.+
T Consensus 156 ~~~----g-~~--~i~l---------~Dt~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 156 EEA----G-AD--EISL---------KDTVGLATPEEVAELVKALREAL 188 (265)
T ss_pred HHc----C-CC--EEEe---------chhcCCcCHHHHHHHHHHHHHhC
Confidence 443 2 12 1222 11237778888888888888775
No 69
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.57 E-value=1.2e+02 Score=31.35 Aligned_cols=93 Identities=15% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCC-CCeeEEEe
Q 016721 259 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGIN-NDHTLAYQ 337 (384)
Q Consensus 259 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~-~~~~lafQ 337 (384)
.+..+..+...+..++.. . ..+..++| .||- +..|.+.++++++.+... |.+ ..+-++|-
T Consensus 95 ~~~~~~~~~~~~~~~~~~-----s-~~k~vlvF-vHGf--------Nntf~dav~R~aqI~~d~----g~~~~pVvFSWP 155 (377)
T COG4782 95 ILQAEASFQTWLGAHISF-----S-SAKTVLVF-VHGF--------NNTFEDAVYRTAQIVHDS----GNDGVPVVFSWP 155 (377)
T ss_pred ecccchhhhHHHhhhccc-----c-CCCeEEEE-Eccc--------CCchhHHHHHHHHHHhhc----CCCcceEEEEcC
Confidence 345555555555544322 1 13334555 5662 566777777787776654 553 34667777
Q ss_pred cCc---c------CCCCCCCcHHHHHHHHHhCC-CCeEEEEec
Q 016721 338 SRV---G------PVKWLKPYTDEVLVELGQKG-VKSLLAIPV 370 (384)
Q Consensus 338 Sr~---G------~~~WL~P~t~d~L~~L~~~G-vk~VvVvP~ 370 (384)
|+. | ...|-.|.++.+|+.|++++ +++|.|++=
T Consensus 156 S~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAH 198 (377)
T COG4782 156 SRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAH 198 (377)
T ss_pred CCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 763 2 24699999999999999875 999999863
No 70
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=38.32 E-value=3e+02 Score=24.84 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHH--HHHHHHH-hcCCCEEEEEe
Q 016721 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIK-RDRITRLVVLP 222 (384)
Q Consensus 165 gSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~--eaL~~L~-~~G~~~IvvlP 222 (384)
.+||...-.+||+++.+.|...+.++.. -|+.|... ++.+.+. ..|.+ +.+.+
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~----i~sS~l~Ra~~TA~~~a~~~~~~-~~~~~ 81 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDA----IYSSPLKRAQQTAEPLAEELGLP-LEVDD 81 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCE----EEECchHHHHHHHHHHHHhcCCC-ceecC
Confidence 4699999999999999999854332222 16677653 3344443 34555 34443
No 71
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=38.29 E-value=84 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCCEEEEEecC
Q 016721 203 TEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 203 i~eaL~~L~~~G~~~IvvlPLy 224 (384)
+.|.++.|.+.|+++++++-=+
T Consensus 88 l~di~~sl~~~Gf~~ivivngH 109 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGH 109 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESS
T ss_pred HHHHHHHHHHcCCCEEEEEECC
Confidence 3445555555666666666554
No 72
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.12 E-value=2.7e+02 Score=26.98 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCCceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHH
Q 016721 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (384)
Q Consensus 187 g~~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~ 244 (384)
+.+++|..| =+..+++++++.. ++.|++-++++| |.|...|....++.+.+...
T Consensus 68 ~~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 68 AGRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TTSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred cCceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 345666665 4567899998855 457999998887 56666676666666666553
No 73
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=38.05 E-value=1.3e+02 Score=33.75 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred cCCceEEEEEccCCCCCcchHHHHHHhhcCCCCcc-cCChhhhhhhhHHHHHHHhcccchhHhhhcccCCCCchhHHHHH
Q 016721 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDII-RLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (384)
Q Consensus 96 ~~~K~aVLLvNlGtP~s~~dV~~fL~~~~~D~~Vi-~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~IgggSPL~~~T~~ 174 (384)
.+++.-|+|.++|++ .-+.=..|..+||.+-.+- ..+..+ .....++.-.+ .+....++ -|-+...+.+
T Consensus 579 ~g~rpkV~LatlG~d-~H~~ra~fv~~~l~~~GfeV~~~~~~----~s~e~~v~aa~----~~~a~ivv-lcs~d~~~~e 648 (714)
T PRK09426 579 EGRRPRILVAKMGQD-GHDRGAKVIATAFADLGFDVDIGPLF----QTPEEAARQAV----ENDVHVVG-VSSLAAGHKT 648 (714)
T ss_pred cCCCceEEEEecCCc-chhHhHHHHHHHHHhCCeeEecCCCC----CCHHHHHHHHH----HcCCCEEE-EeccchhhHH
Confidence 345567999999997 4555667999999776431 223211 01233433221 12222222 3555666666
Q ss_pred HHHHHHHHHHhcCC-CceEEEeeecCCCCHHHHHHHHHhcCCCEEE
Q 016721 175 QAQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (384)
Q Consensus 175 qa~~L~~~L~~~g~-~~~V~~aMrY~~P~i~eaL~~L~~~G~~~Iv 219 (384)
++..+.+.|++.|. ++.|.+| |.|..++ .+.+.+.|++..+
T Consensus 649 ~~~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i 690 (714)
T PRK09426 649 LVPALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIF 690 (714)
T ss_pred HHHHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEE
Confidence 78888888988875 4778887 7654333 3778888998765
No 74
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=37.22 E-value=10 Score=33.73 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCeEEEEeceeeecCceEE
Q 016721 350 TDEVLVELGQKGVKSLLAIPVRYTLLTEVLA 380 (384)
Q Consensus 350 t~d~L~~L~~~Gvk~VvVvP~gFVsd~~~~~ 380 (384)
+.+++.+|-.-| |.|+.+|+|||..|.-||
T Consensus 80 l~~vi~~lNsl~-~~i~~mP~GyvthGl~La 109 (142)
T PF11633_consen 80 LTDVIKALNSLG-KPIITMPFGYVTHGLNLA 109 (142)
T ss_dssp HHHHHHHHCCCT-S-EEES-TTCCCCTB-HH
T ss_pred HHHHHHHHhhcC-CCceeeeeeeeeccccHH
Confidence 567999987766 899999999999998765
No 75
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.15 E-value=1.9e+02 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCCceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHH
Q 016721 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (384)
Q Consensus 187 g~~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~ 244 (384)
+..++|..|- +. +++++++.. .+.|++-++++| |.|...+....++.+.+..+
T Consensus 74 ~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 74 AGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred CCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 3356677776 44 888988755 456999998877 55666565555555555444
No 76
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.14 E-value=2e+02 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHH
Q 016721 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (384)
Q Consensus 188 ~~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~ 244 (384)
.+++|..|- +.++++++++.. .+.|++-++++| |.|...+....++.+.+..+
T Consensus 65 ~~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 65 GRVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred CCCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 355666554 567888887744 456999888877 55666565555565555544
No 77
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=35.54 E-value=3.9e+02 Score=26.88 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=18.6
Q ss_pred CCCCCeeEEEecCcc-CCCCCC-----CcHHHHHHHHHhCCCCeE
Q 016721 327 GINNDHTLAYQSRVG-PVKWLK-----PYTDEVLVELGQKGVKSL 365 (384)
Q Consensus 327 g~~~~~~lafQSr~G-~~~WL~-----P~t~d~L~~L~~~Gvk~V 365 (384)
|+ +.+.++.||--. --++++ -.+.+.++.+.+.|+++|
T Consensus 110 Gv-~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v 153 (360)
T TIGR00539 110 GI-NRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENI 153 (360)
T ss_pred CC-CEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 55 467777777321 011222 134445555666666533
No 78
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=35.18 E-value=60 Score=32.49 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecC
Q 016721 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLy 224 (384)
+.+.+.+.+.|.+..| .|=.=.+|++++-++.+.+-+.++|++||=-
T Consensus 106 ~g~~~lf~~~Gv~~vi-~ggqt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 106 EGLAELFRSLGVDVVI-SGGQTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred ccHHHHHHhCCCeEEE-eCCCCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 4455566555655433 3333368999999999999999999999965
No 79
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.48 E-value=4.3e+02 Score=25.41 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred ecCCCCHHHHHHHHHhcCCCEEEEE-ecCCCcc----cCcHHHHHHHHHHHHHHhccCCCCCEEEe--cCCCCCHHHHHH
Q 016721 197 RYWYPFTEEAVQQIKRDRITRLVVL-PLYPQFS----ISTTGSSIRVLQNIFREDAYLSRLPVSII--RSWYQREGYVNS 269 (384)
Q Consensus 197 rY~~P~i~eaL~~L~~~G~~~Ivvl-PLyPqyS----~sTtgs~~~~~~~~~~~~~~~~~~~l~~I--~~~~~~p~yI~a 269 (384)
|.....++.+++.....|++.|-++ |+.+... ..|....++.+.+.++..+..+ ..+.+- ......+.|+..
T Consensus 69 r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G-~~v~~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 69 RAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHG-LDVEFSAEDATRTDLDFLIE 147 (268)
T ss_pred cCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CeEEEeeecCCCCCHHHHHH
Confidence 4444444444444333338877665 6655532 2233344555555554433222 334432 334457888877
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHH
Q 016721 270 MADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (384)
Q Consensus 270 la~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L 323 (384)
+++.+.+. + .+ .+-+ .+.-|--++.++.+.++.+.+.+
T Consensus 148 ~~~~~~~~----G-~~--~i~l---------~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 148 VVEAAIEA----G-AT--TINI---------PDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred HHHHHHHc----C-CC--EEEE---------CCCCCCCCHHHHHHHHHHHHHhC
Confidence 77655443 2 12 1222 22346668888888888887765
No 80
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=33.84 E-value=3.2e+02 Score=28.06 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=42.0
Q ss_pred HhhhcccC----CCCchhHHHHH--HHHHHHHHHHhcCCCceEEEeeecCC--CCHHHHHHHHHhcCCCEEEEEec
Q 016721 156 KEGYAAIG----GGSPLRKITDE--QAQALKTALEAKNLPVNVYVGMRYWY--PFTEEAVQQIKRDRITRLVVLPL 223 (384)
Q Consensus 156 ~~~Y~~Ig----ggSPL~~~T~~--qa~~L~~~L~~~g~~~~V~~aMrY~~--P~i~eaL~~L~~~G~~~IvvlPL 223 (384)
++.+.+.| ||-||..+.+- -+++|+..+ |.++.+. -|.+ ---+++|++|.++|.|+|-+=|-
T Consensus 74 a~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~ef---G~~fHiH---LYT~g~~~~~e~l~~L~eAGLDEIRfHp~ 143 (353)
T COG2108 74 AKLMDALGASITGGDPLLEIERTVEYIRLLKDEF---GEDFHIH---LYTTGILATEEALKALAEAGLDEIRFHPP 143 (353)
T ss_pred HHHhccccccccCCChHHHHHHHHHHHHHHHHhh---ccceeEE---EeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence 34455544 88999998764 455555554 3343333 2443 34588999999999999999886
No 81
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.70 E-value=79 Score=27.74 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=50.8
Q ss_pred CCCCcccCChhhhhhhhHHHHHHHhcccchhHhhhcc-cCCCCchhHHHHHHHHHHHHHHHhcCC-CceEEEeeecC--C
Q 016721 125 ADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAA-IGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGMRYW--Y 200 (384)
Q Consensus 125 ~D~~Vi~lP~~~~~~~~~L~~~I~~~R~~ks~~~Y~~-IgggSPL~~~T~~qa~~L~~~L~~~g~-~~~V~~aMrY~--~ 200 (384)
.+-.|+++..- -+...++.. +..+.. +=+-|-|+..|....+.+.+.|++.+. +++|.+|=--. .
T Consensus 26 ~GfeVidLG~~-----v~~e~~v~a------a~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~ 94 (128)
T cd02072 26 AGFNVVNLGVL-----SPQEEFIDA------AIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred CCCEEEECCCC-----CCHHHHHHH------HHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCCh
Confidence 45577777521 134555442 222222 213577777777777888888888775 78888873321 1
Q ss_pred CCHHHHHHHHHhcCCCEEE
Q 016721 201 PFTEEAVQQIKRDRITRLV 219 (384)
Q Consensus 201 P~i~eaL~~L~~~G~~~Iv 219 (384)
...++..++|++.|++++.
T Consensus 95 ~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred hhhHHHHHHHHHcCCCEEE
Confidence 1225566778889999764
No 82
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=33.60 E-value=4.5e+02 Score=26.52 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCCeeEEEecCc-------cCCCCCCCcHHHHHHHHHhCCCCeEE
Q 016721 327 GINNDHTLAYQSRV-------GPVKWLKPYTDEVLVELGQKGVKSLL 366 (384)
Q Consensus 327 g~~~~~~lafQSr~-------G~~~WL~P~t~d~L~~L~~~Gvk~Vv 366 (384)
|+ +.+.++.||-- |+ .-....+.+.++.+.+.|++.|-
T Consensus 110 G~-~rvsiGvqS~~~~~l~~l~r-~~~~~~~~~~i~~l~~~g~~~v~ 154 (377)
T PRK08599 110 GV-NRISLGVQTFNDELLKKIGR-THNEEDVYEAIANAKKAGFDNIS 154 (377)
T ss_pred CC-CEEEEecccCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCcEE
Confidence 65 46788888842 21 11223556667777777776543
No 83
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.32 E-value=2.3e+02 Score=27.74 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEe
Q 016721 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (384)
Q Consensus 171 ~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlP 222 (384)
+.+.+++.+++.|.+.|.++.....+......+...++++++.|.+-|++..
T Consensus 150 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~ 201 (347)
T cd06335 150 WGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVG 201 (347)
T ss_pred hhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEe
Confidence 5667778888888887766433344455677888999999999998777654
No 84
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=32.27 E-value=1.2e+02 Score=29.77 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred eEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEE
Q 016721 287 VMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLL 366 (384)
Q Consensus 287 ~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~Vv 366 (384)
..+|+|.-+.| +|+.=.+...+..+++.+++ |+. +--++|-++ ++.++.|++++ |.
T Consensus 57 ~g~llSGGm~s------rg~VPl~kf~d~lK~lke~~---~l~------inaHvGfvd------E~~~eklk~~~---vd 112 (275)
T COG1856 57 EGCLLSGGMDS------RGKVPLWKFKDELKALKERT---GLL------INAHVGFVD------ESDLEKLKEEL---VD 112 (275)
T ss_pred eeEEEeCCcCC------CCCccHHHHHHHHHHHHHhh---CeE------EEEEeeecc------HHHHHHHHHhc---Cc
Confidence 46888987765 35543333344556677775 442 233445332 67889999876 46
Q ss_pred EEeceeeecCceEE
Q 016721 367 AIPVRYTLLTEVLA 380 (384)
Q Consensus 367 VvP~gFVsd~~~~~ 380 (384)
++..-||.||+++.
T Consensus 113 vvsLDfvgDn~vIk 126 (275)
T COG1856 113 VVSLDFVGDNDVIK 126 (275)
T ss_pred EEEEeecCChHHHH
Confidence 77789999999864
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.62 E-value=2.4e+02 Score=26.40 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=31.0
Q ss_pred HHHhcCCCceEEE--eee--cCCCCHHHHHHHHHhcCCCEEEEEec
Q 016721 182 ALEAKNLPVNVYV--GMR--YWYPFTEEAVQQIKRDRITRLVVLPL 223 (384)
Q Consensus 182 ~L~~~g~~~~V~~--aMr--Y~~P~i~eaL~~L~~~G~~~IvvlPL 223 (384)
.+.+.|.++.+.+ +++ +...++.+.++.+.+.|++.|.+..+
T Consensus 123 ~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 123 AAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 4445566655554 567 77778888999999999999887665
No 86
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=30.61 E-value=2.6e+02 Score=27.48 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCEEEEEecC--CC--------cccCcHHHHHHHHHHHHHHhccCCCCCEEEecCC---CCCHHHHHH
Q 016721 203 TEEAVQQIKRDRITRLVVLPLY--PQ--------FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW---YQREGYVNS 269 (384)
Q Consensus 203 i~eaL~~L~~~G~~~IvvlPLy--Pq--------yS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~~---~~~p~yI~a 269 (384)
++..|+++.+.|+.- .++|+. |. ....+.....+.++-..+.....+++-...-..+ .....+.++
T Consensus 90 ~d~~i~~a~~~Gi~~-~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIEA-ALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-EE-EEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCeE-EEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 466788888888864 466776 32 0234444444444445555555555546666677 678889999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCCch
Q 016721 270 MADLIQKELGKFQKPEEVMIFFSAHGVPV 298 (384)
Q Consensus 270 la~~I~~~l~~~~~~~~~~LLFSaHGlP~ 298 (384)
+++.|++.- |. . |.|+|.-+.
T Consensus 169 ~~~~i~~~d-----p~--~-L~T~H~~~~ 189 (289)
T PF13204_consen 169 MARGIKEND-----PY--Q-LITIHPCGR 189 (289)
T ss_dssp HHHHHHHH-------S--S--EEEEE-BT
T ss_pred HHHHHHhhC-----CC--C-cEEEeCCCC
Confidence 998777652 23 2 789997764
No 87
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=30.26 E-value=3e+02 Score=26.74 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=33.3
Q ss_pred CceEEEeeecCCCCHHHHHHHHH---hcCCCEEEEEecCCCcccCcHHHHHHHHHHHHH
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L~---~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~ 244 (384)
.++|..|- +..+++++++..+ +.|++-++++| |.|-..+-...++.+.+..+
T Consensus 67 ~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 67 RVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred CCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHh
Confidence 46666663 6678888887544 56999888887 44555555555555555443
No 88
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=30.03 E-value=1.8e+02 Score=25.27 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeecCCC-----CHHHHHHHHHhcCCCEEEEEecCCC
Q 016721 174 EQAQALKTALEAKNLPVNVYVGMRYWYP-----FTEEAVQQIKRDRITRLVVLPLYPQ 226 (384)
Q Consensus 174 ~qa~~L~~~L~~~g~~~~V~~aMrY~~P-----~i~eaL~~L~~~G~~~IvvlPLyPq 226 (384)
+..++++ .+.+.|. +.|...+-.+-| .+.+.++.+.+.|++++.+.|+.|.
T Consensus 137 ~~~~~i~-~~~~~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~ 192 (216)
T smart00729 137 DVLEAVE-KLREAGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR 192 (216)
T ss_pred HHHHHHH-HHHHhCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC
Confidence 3334443 3344452 334444444444 3444555566778888888888876
No 89
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=30.02 E-value=2.3e+02 Score=27.45 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=32.5
Q ss_pred CCCCHHH---HHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEecCCCCCHH
Q 016721 199 WYPFTEE---AVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREG 265 (384)
Q Consensus 199 ~~P~i~e---aL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~ 265 (384)
+.|++.+ +.+++.++|+++|+++++....| |++ +.+..+.+.. +..+++++++...-.+
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LS----gty-~~a~~aa~~~---~~~~i~ViDS~~~s~g 122 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLS----GTY-NSARLAAKML---PDIKIHVIDSKSVSAG 122 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-----THH-HHHHHHHHHH---TTTEEEEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchh----hHH-HHHHHHHhhc---CcCEEEEEeCCCcchh
Confidence 4577765 55566779999999999976544 222 2222222322 3457999998775444
No 90
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=29.99 E-value=49 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEecC
Q 016721 200 YPFTEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 200 ~P~i~eaL~~L~~~G~~~IvvlPLy 224 (384)
.--+.+.+++|++.|.+.|+++|+-
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-S
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3568899999999999999999973
No 91
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.82 E-value=6.1e+02 Score=25.82 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCc---eEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCC----cccCcHH--
Q 016721 163 GGGSPLRKITDEQAQALKTALEAKNLPV---NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ----FSISTTG-- 233 (384)
Q Consensus 163 gggSPL~~~T~~qa~~L~~~L~~~g~~~---~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPq----yS~sTtg-- 233 (384)
|+|=||..+ +...+.++..-++.|..+ .+.+ -..| +.+.+++|.+.|.. .+.+.|.-- +...+.+
T Consensus 163 GmGEPLln~-~~v~~~l~~l~~~~Gl~~~~r~itv-sT~G---~~~~i~~L~~~~l~-~L~iSLha~~~e~r~~i~p~~~ 236 (354)
T PRK14460 163 GMGEPLLNL-DEVMRSLRTLNNEKGLNFSPRRITV-STCG---IEKGLRELGESGLA-FLAVSLHAPNQELRERIMPKAA 236 (354)
T ss_pred cCCcccCCH-HHHHHHHHHHhhhhccCCCCCeEEE-ECCC---ChHHHHHHHhCCCc-EEEEeCCCCCHHHHHHhcCccc
Confidence 778999964 455565553222224321 1211 0122 24578888888873 455555210 0011111
Q ss_pred -HHHHHHHHHHHHh----ccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCch
Q 016721 234 -SSIRVLQNIFRED----AYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPY 308 (384)
Q Consensus 234 -s~~~~~~~~~~~~----~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY 308 (384)
-.++.+.++++++ +..-.+++-.|+.+.|.+.-++++++.+++ .+ ..+ =|+-+|-++ |-+|
T Consensus 237 ~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~----~~--~~V-nLIpyn~~~-------g~~y 302 (354)
T PRK14460 237 RWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSR----TK--CKL-NLIVYNPAE-------GLPY 302 (354)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhc----CC--CcE-EEEcCCCCC-------CCCC
Confidence 0223333333322 111123456799999999999999976643 22 123 345777542 4455
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 016721 309 RDQMEECIYLIMQRLKDRGI 328 (384)
Q Consensus 309 ~~q~~~T~~~i~~~L~~~g~ 328 (384)
..-..+.++...+.|...|+
T Consensus 303 ~~p~~e~v~~f~~~l~~~Gi 322 (354)
T PRK14460 303 SAPTEERILAFEKYLWSKGI 322 (354)
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 54444455555555544455
No 92
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=29.39 E-value=4.3e+02 Score=25.34 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCC
Q 016721 174 EQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP 253 (384)
Q Consensus 174 ~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~ 253 (384)
+.+..+++.+.+.| +.+.+......+..++.++.|.+.+++-+|+.+.... .+.+.+..+. ++|
T Consensus 18 ~ii~gIe~~a~~~G--y~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~---------~~~l~~~~~~-----~iP 81 (279)
T PF00532_consen 18 EIIRGIEQEAREHG--YQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND---------DEELRRLIKS-----GIP 81 (279)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT---------CHHHHHHHHT-----TSE
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC---------hHHHHHHHHc-----CCC
Confidence 44567777777765 5677788888888889999999999999999865432 1223333322 346
Q ss_pred EEEecCCCCCH
Q 016721 254 VSIIRSWYQRE 264 (384)
Q Consensus 254 l~~I~~~~~~p 264 (384)
+-++....+.+
T Consensus 82 vV~~~~~~~~~ 92 (279)
T PF00532_consen 82 VVLIDRYIDNP 92 (279)
T ss_dssp EEEESS-SCTT
T ss_pred EEEEEeccCCc
Confidence 77777665544
No 93
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=29.22 E-value=5.3e+02 Score=26.47 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=5.8
Q ss_pred CCCCCeeEEEec
Q 016721 327 GINNDHTLAYQS 338 (384)
Q Consensus 327 g~~~~~~lafQS 338 (384)
|+ +.+.++.||
T Consensus 125 Gv-nrislGvQS 135 (400)
T PRK07379 125 GV-NRVSLGVQA 135 (400)
T ss_pred CC-CEEEEEccc
Confidence 44 355555555
No 94
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=29.03 E-value=3.1e+02 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=8.2
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 016721 305 GDPYRDQMEECIYLIMQRL 323 (384)
Q Consensus 305 GDpY~~q~~~T~~~i~~~L 323 (384)
||-+.+....-.+.+.+++
T Consensus 92 GdI~~~~~r~~~e~vc~~l 110 (218)
T PF01902_consen 92 GDIDSEYQRNWVERVCERL 110 (218)
T ss_dssp -TTS-HHHHHHHHHHHHHC
T ss_pred CcCCcHHHHHHHHHHHHHc
Confidence 5554444444444455544
No 95
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.67 E-value=3.3e+02 Score=26.68 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCceEEEeeecCCCCHHHHHHHHH---hcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEec--CCCC
Q 016721 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR--SWYQ 262 (384)
Q Consensus 188 ~~~~V~~aMrY~~P~i~eaL~~L~---~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~--~~~~ 262 (384)
.+++|..+- +. +++++++..+ +.|++-++++| |.|...+-...++.+.+..+.. ++++-+-+ ...-
T Consensus 73 g~~pvi~gv--~~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~a~----~~pvilYn~~g~~l 143 (296)
T TIGR03249 73 GKVPVYTGV--GG-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCEST----DLGVIVYQRDNAVL 143 (296)
T ss_pred CCCcEEEec--Cc-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHhcc----CCCEEEEeCCCCCC
Confidence 356677776 33 5899888654 47999988877 5576656555555555554431 23333322 2223
Q ss_pred CHHHHHHHHH
Q 016721 263 REGYVNSMAD 272 (384)
Q Consensus 263 ~p~yI~ala~ 272 (384)
.+..+..+++
T Consensus 144 ~~~~~~~La~ 153 (296)
T TIGR03249 144 NADTLERLAD 153 (296)
T ss_pred CHHHHHHHHh
Confidence 5566666654
No 96
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=28.50 E-value=5.2e+02 Score=26.93 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccC
Q 016721 263 REGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGP 342 (384)
Q Consensus 263 ~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~ 342 (384)
...|++++.+-|+......+....+.=||-.+|+|.-. =++|++.....|.+.+. +++...+++.=.
T Consensus 64 ~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL-------~~~~l~~ll~~l~~~~~--~~~~~~EitiE~---- 130 (416)
T COG0635 64 VDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLL-------SPEQLERLLKALRELFN--DLDPDAEITIEA---- 130 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccC-------CHHHHHHHHHHHHHhcc--cCCCCceEEEEe----
Confidence 34488888877776665544323467789999999654 24667777777777662 122223444322
Q ss_pred CCCCCCc--HHHHHHHHHhCCCCeEEE
Q 016721 343 VKWLKPY--TDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 343 ~~WL~P~--t~d~L~~L~~~Gvk~VvV 367 (384)
-|. ..+.++.|++.|+.+|=+
T Consensus 131 ----nP~~~~~e~~~~l~~~GvNRiSl 153 (416)
T COG0635 131 ----NPGTVEAEKFKALKEAGVNRISL 153 (416)
T ss_pred ----CCCCCCHHHHHHHHHcCCCEEEe
Confidence 233 456677777777777644
No 97
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=28.21 E-value=4.2e+02 Score=25.96 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=34.9
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHH
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~ 245 (384)
.++|..+- +..+++++++.. .+.|++-++++| |.|...|....++.+.+..+.
T Consensus 70 ~~pvi~gv--~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 70 QIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIAE 125 (290)
T ss_pred CCcEEEec--CCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHhh
Confidence 45565553 356788887744 456999888877 667777766666666665543
No 98
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.17 E-value=3.3e+02 Score=28.12 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCc--hHHHHHHHHHHHHHHHhhcCCCCCeeEEE
Q 016721 259 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDP--YRDQMEECIYLIMQRLKDRGINNDHTLAY 336 (384)
Q Consensus 259 ~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDp--Y~~q~~~T~~~i~~~L~~~g~~~~~~laf 336 (384)
+|.-++.|.=-|-+.+.++- + +.. -+| ++..|+| |+ ....+.+.|. +++.--.++-
T Consensus 138 dy~Vd~eyLl~w~~kVa~~K---g--kgl----EaH------lDGqGEP~lYP-----~l~~lVqalk--~~~~v~vVSm 195 (414)
T COG2100 138 DYVVDPEYLLEWFEKVARFK---G--KGL----EAH------LDGQGEPLLYP-----HLVDLVQALK--EHKGVEVVSM 195 (414)
T ss_pred ceEecHHHHHHHHHHHHhhh---C--CCe----EEE------ecCCCCCccch-----hHHHHHHHHh--cCCCceEEEE
Confidence 57888888877777776552 1 111 223 4456777 65 2333444442 2322235788
Q ss_pred ecCccCCCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 337 QSRVGPVKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 337 QSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
||+.+ +-.++.+++|++.|..++-+
T Consensus 196 QTng~------~L~~~lv~eLeeAGLdRiNl 220 (414)
T COG2100 196 QTNGV------LLSKKLVDELEEAGLDRINL 220 (414)
T ss_pred eeCce------eccHHHHHHHHHhCCceEEe
Confidence 99875 55688899999999988764
No 99
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=27.77 E-value=5.1e+02 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=8.6
Q ss_pred CCCCCCcH-HHHHHHHHh
Q 016721 343 VKWLKPYT-DEVLVELGQ 359 (384)
Q Consensus 343 ~~WL~P~t-~d~L~~L~~ 359 (384)
.+||+=.+ .+.+++|.+
T Consensus 150 ~~~lG~~~~~~~~~~l~~ 167 (218)
T TIGR03679 150 ESWLGREIDEKYIEKLKA 167 (218)
T ss_pred hHHCCCccCHHHHHHHHH
Confidence 45664433 355555543
No 100
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=27.57 E-value=1.4e+02 Score=30.17 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=30.2
Q ss_pred cCCCCchh---HHHHHHHHHHHHHHHhcCCCceEEEeeecCCC--CHHHHHHHHHhcCCCEEE
Q 016721 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (384)
Q Consensus 162 IgggSPL~---~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P--~i~eaL~~L~~~G~~~Iv 219 (384)
+|||.|.. ..-++..+.|++.+.-. .+ ..+.+. .+| .-++.++.|++.|+++|-
T Consensus 57 ~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~--~eitie-~np~~lt~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 57 IGGGTPNTLSVEAFERLFESIYQHASLS-DD--CEITTE-ANPELITAEWCKGLKGAGINRLS 115 (360)
T ss_pred eCCCchhcCCHHHHHHHHHHHHHhCCCC-CC--CEEEEE-eCCCCCCHHHHHHHHHcCCCEEE
Confidence 38999965 34444555554444211 11 222221 234 346788999999998773
No 101
>PLN02417 dihydrodipicolinate synthase
Probab=27.47 E-value=3.6e+02 Score=26.20 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=31.6
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHH
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~ 244 (384)
.++|..+ -+.++++++++.. ++.|++-++++| |.|...|....++.+.+..+
T Consensus 70 ~~pvi~g--v~~~~t~~~i~~a~~a~~~Gadav~~~~--P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 70 KIKVIGN--TGSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred CCcEEEE--CCCccHHHHHHHHHHHHHcCCCEEEEcC--CccCCCCHHHHHHHHHHHHh
Confidence 3445433 3567788887754 356888887776 55665555555555555443
No 102
>PRK06756 flavodoxin; Provisional
Probab=27.43 E-value=4e+02 Score=22.85 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEE
Q 016721 169 RKITDEQAQALKTALEAKNLPVNVY 193 (384)
Q Consensus 169 ~~~T~~qa~~L~~~L~~~g~~~~V~ 193 (384)
.-.|+..|+++.+.|.+.|.++.+.
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~ 36 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVI 36 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEe
Confidence 3479999999999998777665543
No 103
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.90 E-value=5.8e+02 Score=24.63 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=73.5
Q ss_pred CCceEEEeeecCCC----CHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCC-EEEecCCCC
Q 016721 188 LPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP-VSIIRSWYQ 262 (384)
Q Consensus 188 ~~~~V~~aMrY~~P----~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~-l~~I~~~~~ 262 (384)
.+.++. .|-|.+| .+++-++++++.|++-+++--| |. .....+.+.+++++ +. +-++.+= .
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~-------ee~~~~~~~~~~~g----l~~i~lv~P~-T 151 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PL-------EESGDLVEAAKKHG----VKPIFLVAPN-A 151 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-Ch-------HHHHHHHHHHHHCC----CcEEEEECCC-C
Confidence 355665 9999999 5567788999999998887766 31 12234444445432 23 3344433 3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccC
Q 016721 263 REGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGP 342 (384)
Q Consensus 263 ~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~ 342 (384)
.+.-++.++ +.. +...++.|-.|.- .....+..++.+.++.+.+.. +. ++.+.| |
T Consensus 152 ~~eri~~i~-------~~~---~gfiy~vs~~G~T-----G~~~~~~~~~~~~i~~lr~~~---~~--pi~vgf----G- 206 (256)
T TIGR00262 152 DDERLKQIA-------EKS---QGFVYLVSRAGVT-----GARNRAASALNELVKRLKAYS---AK--PVLVGF----G- 206 (256)
T ss_pred CHHHHHHHH-------HhC---CCCEEEEECCCCC-----CCcccCChhHHHHHHHHHhhc---CC--CEEEeC----C-
Confidence 333443333 111 2234556655532 111235566777777777653 22 333332 3
Q ss_pred CCCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 343 VKWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 343 ~~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
=.+.+.++++.+.|..-|+|
T Consensus 207 -----I~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 207 -----ISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred -----CCCHHHHHHHHHcCCCEEEE
Confidence 23445677777777765444
No 104
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=26.75 E-value=3.7e+02 Score=26.34 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=34.1
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHH
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~ 245 (384)
.++|..|- +..+++|+++.. .+.|++-++++| |.|...+-...++.+.+..+.
T Consensus 69 ~~pvi~gv--~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 69 RIPFAPGT--GALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred CCcEEEEC--CcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHHh
Confidence 45565443 457888887744 456999988888 557666655555655555543
No 105
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=26.46 E-value=3.8e+02 Score=22.30 Aligned_cols=35 Identities=9% Similarity=0.212 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhh-cCCC-CCeeEEEecCccCCCC
Q 016721 310 DQMEECIYLIMQRLKD-RGIN-NDHTLAYQSRVGPVKW 345 (384)
Q Consensus 310 ~q~~~T~~~i~~~L~~-~g~~-~~~~lafQSr~G~~~W 345 (384)
++.++..+.|.+.|.. .|++ +++.+.|+- ..+..|
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~-~~~~~w 108 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSERVYIEFKD-CSAQNW 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccEEEEEEE-CChhhe
Confidence 4444444444444432 2775 568888865 344445
No 106
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=25.80 E-value=1.5e+02 Score=29.79 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC---eeEEEecCccCCCC---CCCcH--HHHHHHHHhCCCCeEEEEeceeeec
Q 016721 309 RDQMEECIYLIMQRLKDRGINND---HTLAYQSRVGPVKW---LKPYT--DEVLVELGQKGVKSLLAIPVRYTLL 375 (384)
Q Consensus 309 ~~q~~~T~~~i~~~L~~~g~~~~---~~lafQSr~G~~~W---L~P~t--~d~L~~L~~~Gvk~VvVvP~gFVsd 375 (384)
.+++++.++.+.+. +++-+ ...-|+...+.=.| .-|+- .+.+++|.++|+|=++.+-|....+
T Consensus 23 ~~~v~~~~~~~r~~----~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~ 93 (339)
T cd06602 23 VDEVKEVVENMRAA----GIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISAN 93 (339)
T ss_pred HHHHHHHHHHHHHh----CCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccC
Confidence 45555555555443 67533 23455554433223 24777 9999999999999888888777654
No 107
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.24 E-value=7.4e+02 Score=25.88 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.4
Q ss_pred cHHHHHHHHHhCCCCeE
Q 016721 349 YTDEVLVELGQKGVKSL 365 (384)
Q Consensus 349 ~t~d~L~~L~~~Gvk~V 365 (384)
.+.+.++.+.+.|+++|
T Consensus 189 ~~~~ai~~lr~~G~~~v 205 (453)
T PRK13347 189 MVARAVELLRAAGFESI 205 (453)
T ss_pred HHHHHHHHHHhcCCCcE
Confidence 34445566666666543
No 108
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.19 E-value=2.4e+02 Score=27.47 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCC
Q 016721 168 LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (384)
Q Consensus 168 L~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyP 225 (384)
-..+.+..++.+++.+.+.|.++.....+..+...+...+.++++.+++-|++ ..++
T Consensus 153 ~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~-~~~~ 209 (362)
T cd06343 153 NDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVL-ATTP 209 (362)
T ss_pred ccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEE-EcCc
Confidence 34567778888888898887765545555666778889999999999985554 5553
No 109
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=25.04 E-value=2.1e+02 Score=25.22 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeEEEecCccCCCCCCC-----cHHHHHHHHHhCCCCeEEEE
Q 016721 311 QMEECIYLIMQRLKDRGINNDHTLAYQSRVGPVKWLKP-----YTDEVLVELGQKGVKSLLAI 368 (384)
Q Consensus 311 q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~~WL~P-----~t~d~L~~L~~~Gvk~VvVv 368 (384)
.|.+|++.+++.+ +.+.. +. ..+++.| .+.+.|+++.+++.+.|+||
T Consensus 55 Ra~qTa~~l~~~~---~~~~~--~~------~~~~l~p~~~~~~~~~~l~~~~~~~~~~vliV 106 (152)
T TIGR00249 55 RAEQTAEIVGDCL---NLPSS--AE------VLEGLTPCGDIGLVSDYLEALTNEGVASVLLV 106 (152)
T ss_pred HHHHHHHHHHHHc---CCCcc--eE------EccCcCCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 5667888888776 33211 11 1223344 35556666665556677776
No 110
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=24.99 E-value=4.5e+02 Score=25.27 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeecC--CCCHHHHHHHHHhcCCCEEEEEecCC
Q 016721 171 ITDEQAQALKTALEAKNLPVNVYVGMRYW--YPFTEEAVQQIKRDRITRLVVLPLYP 225 (384)
Q Consensus 171 ~T~~qa~~L~~~L~~~g~~~~V~~aMrY~--~P~i~eaL~~L~~~G~~~IvvlPLyP 225 (384)
+.+..++.+++.+.+.|+.+.....+.-. .......+++|++.+. ++|++..++
T Consensus 172 ~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~-~vvv~~~~~ 227 (348)
T cd06350 172 YGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTA-RVIVVFGDE 227 (348)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCC-cEEEEEeCc
Confidence 55667777888887777654322222222 2356778899998887 677777664
No 111
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=24.74 E-value=1.5e+02 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCCEEEEEecC
Q 016721 203 TEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 203 i~eaL~~L~~~G~~~IvvlPLy 224 (384)
..+.++++.+.+++-|++.+..
T Consensus 44 ~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 44 EREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHHHcCcCEEEEecCC
Confidence 3445556666666666666554
No 112
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=24.69 E-value=7.4e+02 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=11.0
Q ss_pred EeeecCCCCHHHHHHHHHhcCC
Q 016721 194 VGMRYWYPFTEEAVQQIKRDRI 215 (384)
Q Consensus 194 ~aMrY~~P~i~eaL~~L~~~G~ 215 (384)
+++=-..-...+|++.|.++|+
T Consensus 279 v~~Gs~~~~a~eAv~~Lr~~G~ 300 (376)
T PRK08659 279 VAYGSVARSARRAVKEAREEGI 300 (376)
T ss_pred EEeCccHHHHHHHHHHHHhcCC
Confidence 3333334445555555555554
No 113
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.60 E-value=7.5e+02 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=18.7
Q ss_pred CCCCCeeEEEecCc-------cCCCCCCCcHHHHHHHHHhCCCCeE
Q 016721 327 GINNDHTLAYQSRV-------GPVKWLKPYTDEVLVELGQKGVKSL 365 (384)
Q Consensus 327 g~~~~~~lafQSr~-------G~~~WL~P~t~d~L~~L~~~Gvk~V 365 (384)
|+ +.+.++.||-- |... ....+.+.++.+.+.|++.|
T Consensus 117 Gv-~risiGvqS~~~~~L~~l~r~~-~~~~~~~ai~~~~~~G~~~v 160 (378)
T PRK05660 117 GV-NRISIGVQSFSEEKLKRLGRIH-GPDEAKRAAKLAQGLGLRSF 160 (378)
T ss_pred CC-CEEEeccCcCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeE
Confidence 55 46677777732 2111 12234445566666676653
No 114
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=24.55 E-value=1.3e+02 Score=25.79 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCc-hhHHHHHHHHHHHHHHHhcCCCceEEE
Q 016721 165 GSP-LRKITDEQAQALKTALEAKNLPVNVYV 194 (384)
Q Consensus 165 gSP-L~~~T~~qa~~L~~~L~~~g~~~~V~~ 194 (384)
||| -...|+..++.+.+.|.+.|.++++.-
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~ 38 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVID 38 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 566 778999999999999988766655543
No 115
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.93 E-value=4.8e+02 Score=26.48 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=44.0
Q ss_pred HHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEecCCC
Q 016721 182 ALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWY 261 (384)
Q Consensus 182 ~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~~~ 261 (384)
.|.++|+++.| +-++.-.|+-++.|.++.+ ++++|+++=.- .|-..+.+..++.. ...+.++..|.
T Consensus 267 ~L~~~Gi~v~v-i~~~~l~Pfp~~~i~~~l~-~~k~VivvE~n-------~g~l~~ei~~~~~~-----~~~~~~i~k~~ 332 (352)
T PRK07119 267 MAREEGIKVGL-FRPITLWPFPEKALEELAD-KGKGFLSVEMS-------MGQMVEDVRLAVNG-----KKPVEFYGRMG 332 (352)
T ss_pred HHHHcCCeEEE-EeeceecCCCHHHHHHHHh-CCCEEEEEeCC-------ccHHHHHHHHHhCC-----CCceeEEeccC
Confidence 45555655443 4445566777777776643 57777776552 23333333332211 01355666666
Q ss_pred CCHHHHHHHHHHHHHH
Q 016721 262 QREGYVNSMADLIQKE 277 (384)
Q Consensus 262 ~~p~yI~ala~~I~~~ 277 (384)
.++-..+-+.+.|++.
T Consensus 333 G~~~~~~~i~~~~~~~ 348 (352)
T PRK07119 333 GMVPTPEEILEKIKEI 348 (352)
T ss_pred CEeCCHHHHHHHHHHH
Confidence 6666666566555544
No 116
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.70 E-value=4.1e+02 Score=25.58 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEe
Q 016721 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (384)
Q Consensus 170 ~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlP 222 (384)
.+.+.+++.+++.|.+.|.++.....+....+.....+.++++.+.+-|++.-
T Consensus 146 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~ 198 (340)
T cd06349 146 DWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILIS 198 (340)
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEcc
Confidence 36778888888889877765443344445677888999999999998766543
No 117
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.76 E-value=7.2e+02 Score=24.25 Aligned_cols=103 Identities=19% Similarity=0.307 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEE-------------------eeecC---CCCHHHHHHHHHhcCCCEEEEEecCCCccc
Q 016721 172 TDEQAQALKTALEAKNLPVNVYV-------------------GMRYW---YPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (384)
Q Consensus 172 T~~qa~~L~~~L~~~g~~~~V~~-------------------aMrY~---~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~ 229 (384)
|++....+.+.+.+.++++.|.+ .|.+. -|..++-+++|++.|++ +++-+.|.-+.
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k--~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLK--VTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCE--EEEEeCCCccc
Confidence 45566667777777775543331 13322 28889999999999997 55666786432
Q ss_pred CcHHHHHHHHHHHHHHhcc-CCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 016721 230 STTGSSIRVLQNIFREDAY-LSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (384)
Q Consensus 230 sTtgs~~~~~~~~~~~~~~-~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~ 281 (384)
......++.+. +.... .......++ ++ .+|.+.+.+-+.+.+.+...
T Consensus 101 ~~~~~~y~~~~---~~~~~~~~~~~~~~~-D~-tnp~a~~~w~~~~~~~~~~~ 148 (292)
T cd06595 101 RAHEDQYPEMA---KALGVDPATEGPILF-DL-TNPKFMDAYFDNVHRPLEKQ 148 (292)
T ss_pred CCCcHHHHHHH---HhcCCCcccCCeEEe-cC-CCHHHHHHHHHHHHHHHHhc
Confidence 11112223222 11111 011112222 33 47999998888887776544
No 118
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.69 E-value=6.7e+02 Score=23.88 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCCEEEE-EecCCCccc----CcHHHHHHHHHHHHHHhccCC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Q 016721 204 EEAVQQIKRDRITRLVV-LPLYPQFSI----STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWYQREGYVNSMADLIQKE 277 (384)
Q Consensus 204 ~eaL~~L~~~G~~~Ivv-lPLyPqyS~----sTtgs~~~~~~~~~~~~~~~~-~~~l~~I~~~~~~p~yI~ala~~I~~~ 277 (384)
.+.++...+.|++.|-+ +|..+++.. .|....++.+.+.++..+..+ .+.+.........+.|+..+++.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC
Confidence 44566777789987655 455555332 223333444444444322222 122334444445678887777555432
Q ss_pred HhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHH
Q 016721 278 LGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (384)
Q Consensus 278 l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L 323 (384)
+ .+ .+-+ .+.-|--++.++.+.+..+.+.+
T Consensus 152 ----G-~~--~i~l---------~DT~G~~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 152 ----G-AD--RLRF---------ADTVGILDPFTTYELIRRLRAAT 181 (259)
T ss_pred ----C-CC--EEEe---------CCCCCCCCHHHHHHHHHHHHHhc
Confidence 2 12 1222 22346678888888887777765
No 119
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=22.65 E-value=8.4e+02 Score=24.94 Aligned_cols=87 Identities=15% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHHhhcCCCCCeeEEEecCccCC
Q 016721 264 EGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQSRVGPV 343 (384)
Q Consensus 264 p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L~~~g~~~~~~lafQSr~G~~ 343 (384)
..|++++.+-|+........ ..+.-||-.-|+|.-. =.+++.+.++.|.+.+ .+....+++.-++-+..
T Consensus 52 ~~Y~~~l~~ei~~~~~~~~~-~~i~siy~GGGTPs~L-------~~~~L~~ll~~i~~~~---~~~~~~eit~E~~p~~~ 120 (394)
T PRK08898 52 AAYLDALRADLEQALPLVWG-RQVHTVFIGGGTPSLL-------SAAGLDRLLSDVRALL---PLDPDAEITLEANPGTF 120 (394)
T ss_pred HHHHHHHHHHHHHHHHhccC-CceeEEEECCCCcCCC-------CHHHHHHHHHHHHHhC---CCCCCCeEEEEECCCCC
Confidence 44777777666543221111 1233445444444322 1344555555555544 22222344444432211
Q ss_pred CCCCCcHHHHHHHHHhCCCCeEEE
Q 016721 344 KWLKPYTDEVLVELGQKGVKSLLA 367 (384)
Q Consensus 344 ~WL~P~t~d~L~~L~~~Gvk~VvV 367 (384)
+.+.|+.|++.|+.+|-+
T Consensus 121 ------~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 121 ------EAEKFAQFRASGVNRLSI 138 (394)
T ss_pred ------CHHHHHHHHHcCCCeEEE
Confidence 235566666666665543
No 120
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.61 E-value=2.2e+02 Score=25.99 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeeecCCC-CHHHHHHHHHhcCCCEEEEEecCC
Q 016721 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYP-FTEEAVQQIKRDRITRLVVLPLYP 225 (384)
Q Consensus 172 T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P-~i~eaL~~L~~~G~~~IvvlPLyP 225 (384)
.....+.+++.+++.|.++.+. +.....+ .-.+.++++.+.|++-|++.|..|
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~ 66 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP 66 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSST
T ss_pred HHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH
Confidence 3344455555665555444332 3333333 223456677777888888887775
No 121
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=22.61 E-value=1.9e+02 Score=25.96 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=16.5
Q ss_pred ceEEEeeecCCCCHHHH--------HHHHHhcCCCEEEEEec
Q 016721 190 VNVYVGMRYWYPFTEEA--------VQQIKRDRITRLVVLPL 223 (384)
Q Consensus 190 ~~V~~aMrY~~P~i~ea--------L~~L~~~G~~~IvvlPL 223 (384)
+-.+.+|.|..-.-.+. -++|++.|.++|+++.-
T Consensus 52 v~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~ 93 (142)
T PF10673_consen 52 VLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTS 93 (142)
T ss_pred EEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 44455555554433332 22455556666655543
No 122
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=22.61 E-value=6.8e+02 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=9.6
Q ss_pred CCCCCCcHH-HHHHHHHh
Q 016721 343 VKWLKPYTD-EVLVELGQ 359 (384)
Q Consensus 343 ~~WL~P~t~-d~L~~L~~ 359 (384)
.+||+=.++ +.+++|.+
T Consensus 148 ~~~LGr~id~~~~~~L~~ 165 (222)
T TIGR00289 148 ESWLGRRIDKECIDDLKR 165 (222)
T ss_pred hHHcCCccCHHHHHHHHH
Confidence 456666655 45555543
No 123
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=22.56 E-value=6.6e+02 Score=27.74 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=30.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhc-CC-CceEEEeeecCCCCHH--HHHHHHH
Q 016721 162 IGGGSPLRKITDEQAQALKTALEAK-NL-PVNVYVGMRYWYPFTE--EAVQQIK 211 (384)
Q Consensus 162 IgggSPL~~~T~~qa~~L~~~L~~~-g~-~~~V~~aMrY~~P~i~--eaL~~L~ 211 (384)
++|.|||...-++||++|.+.|+.. .. ...| |..|... ++.+-+.
T Consensus 438 ~~Gd~pLt~~G~~qA~~l~~~l~~~~~~~~~~V-----~sSpl~Ra~~TA~~i~ 486 (664)
T PTZ00322 438 IGGNSRLTERGRAYSRALFEYFQKEISTTSFTV-----MSSCAKRCTETVHYFA 486 (664)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHhccCCCCcEE-----EcCCcHHHHHHHHHHH
Confidence 4678999999999999999999753 11 1123 5667644 4444443
No 124
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=22.45 E-value=93 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEece
Q 016721 347 KPYTDEVLVELGQKGVKSLLAIPVR 371 (384)
Q Consensus 347 ~P~t~d~L~~L~~~Gvk~VvVvP~g 371 (384)
+-.+.+++.+|.+.|.+.|+++|+-
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-S
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4578899999999999999999974
No 125
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=22.23 E-value=2e+02 Score=26.36 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCceEEEeeecCC-C-CHHHHHHHHHhcCCCEEEEEecC
Q 016721 175 QAQALKTALEAKNLPVNVYVGMRYWY-P-FTEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 175 qa~~L~~~L~~~g~~~~V~~aMrY~~-P-~i~eaL~~L~~~G~~~IvvlPLy 224 (384)
..+.+++.+++.|.++ .+...+.. + ...+.++.+...+++-|++.|..
T Consensus 17 ~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 17 IQLGALDACRDTGYQL--VIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred HHHHHHHHHHhCCCeE--EEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3355555665555443 33333322 2 34445555667788888887654
No 126
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.14 E-value=2.8e+02 Score=26.83 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCC
Q 016721 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (384)
Q Consensus 171 ~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyP 225 (384)
+.+..++.+++.+.+.|.++.-..-+.-+.+.+...+.++++.|.+-|+ +-.++
T Consensus 149 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi-~~~~~ 202 (344)
T cd06348 149 FSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIV-ISALA 202 (344)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEE-ECCcc
Confidence 5677888888888877766543344455678889999999999988544 44453
No 127
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=22.13 E-value=1.3e+02 Score=29.48 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCch
Q 016721 265 GYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPV 298 (384)
Q Consensus 265 ~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~ 298 (384)
.|-+++++.|.+..+.++ ..+++..||+|-
T Consensus 122 PYH~al~~~L~~~~~~~g----~~~liD~HSm~s 151 (263)
T TIGR02017 122 PYHAALQAEIERLRAQHG----YAVLYDAHSIRS 151 (263)
T ss_pred HHHHHHHHHHHHHHHhCC----CEEEEEeccCCc
Confidence 488888888887777664 379999998885
No 128
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=21.95 E-value=2.6e+02 Score=29.81 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCc-eEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHH
Q 016721 168 LRKITDEQAQALKTALEAKNLPV-NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (384)
Q Consensus 168 L~~~T~~qa~~L~~~L~~~g~~~-~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~ 241 (384)
...-|+++|.++.+.+..-+... .+.+++-||-=++..-+++|.. |++=|| .|.|-.+|.+.+
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivV----------aTPGRllD~i~~ 167 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVV----------ATPGRLLDLIKR 167 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEE----------ECccHHHHHHHc
Confidence 34457788887777775533222 4667889998888888888876 765443 355666655443
No 129
>PRK10481 hypothetical protein; Provisional
Probab=21.88 E-value=47 Score=31.92 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCCCCCcHHHHHHHHHhCCCCeEEEEece
Q 016721 343 VKWLKPYTDEVLVELGQKGVKSLLAIPVR 371 (384)
Q Consensus 343 ~~WL~P~t~d~L~~L~~~Gvk~VvVvP~g 371 (384)
.+|..|.+.+.+.+|.++|++-+++.|.|
T Consensus 72 ~~~v~~~lq~~i~~l~~~g~d~ivl~Ctg 100 (224)
T PRK10481 72 KQKVERDLQSVIEVLDNQGYDVILLLCTG 100 (224)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 46899999999999999999999999976
No 130
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=21.79 E-value=2e+02 Score=26.12 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeeecCCCC-HHHHHHHHHhcCCCEEEEEecC
Q 016721 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPF-TEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 173 ~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~-i~eaL~~L~~~G~~~IvvlPLy 224 (384)
....+.+++.+.+.|.. +.+..-...|. ..+.+++|...+++-+++.|..
T Consensus 15 ~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~ 65 (259)
T cd01542 15 SRTVKGILAALYENGYQ--MLLMNTNFSIEKEIEALELLARQKVDGIILLATT 65 (259)
T ss_pred HHHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 34556666677666644 33322222333 3456778888888888888654
No 131
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=21.76 E-value=1.3e+02 Score=30.35 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHHH
Q 016721 263 REGYVNSMADLIQKEL 278 (384)
Q Consensus 263 ~p~yI~ala~~I~~~l 278 (384)
.+.-++.+++.|++.+
T Consensus 362 ~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 362 TDADVDRVITALQQIA 377 (379)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4455666666665543
No 132
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=21.71 E-value=3.4e+02 Score=28.03 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=46.7
Q ss_pred CceEEEeeecCCCC-HHHHHHHHHh-cCCCEEEEEec-CCCcccCcHHHHHHHHHHHHHHhccCCCCCEEEecCCCCCHH
Q 016721 189 PVNVYVGMRYWYPF-TEEAVQQIKR-DRITRLVVLPL-YPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREG 265 (384)
Q Consensus 189 ~~~V~~aMrY~~P~-i~eaL~~L~~-~G~~~IvvlPL-yPqyS~sTtgs~~~~~~~~~~~~~~~~~~~l~~I~~~~~~p~ 265 (384)
+..|-+|..=.+.. --|+|++|++ .|-+.-|++|| || .+...+.+++.+..++. .+.-.+.++.+|=..+.
T Consensus 185 ~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg----~~n~~Yi~~V~~~~~~l--F~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYG----ANNQAYIQQVIQAGKEL--FGAENFQILTEFMPFDE 258 (360)
T ss_pred ceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCC----CchHHHHHHHHHHHHHh--cCccceeEhhhhCCHHH
Confidence 45566676544333 3567777775 45556688888 54 12345666666655542 22224677777888888
Q ss_pred HHHHHH
Q 016721 266 YVNSMA 271 (384)
Q Consensus 266 yI~ala 271 (384)
|.+.+.
T Consensus 259 Yl~lL~ 264 (360)
T PF07429_consen 259 YLALLS 264 (360)
T ss_pred HHHHHH
Confidence 887665
No 133
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.62 E-value=8.1e+02 Score=24.86 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 016721 264 EGYVNSMADLIQKEL 278 (384)
Q Consensus 264 p~yI~ala~~I~~~l 278 (384)
..|++++.+.|+...
T Consensus 34 ~~Y~~aL~~Ei~~~~ 48 (380)
T PRK09057 34 ARFAAAFLRELATEA 48 (380)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666665433
No 134
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.43 E-value=2.5e+02 Score=27.97 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEeceeeecC
Q 016721 347 KPYTDEVLVELGQKGVKSLLAIPVRYTLLT 376 (384)
Q Consensus 347 ~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~ 376 (384)
-|+..+.+++|.++|+|-++.+-|.+..|.
T Consensus 70 FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~ 99 (317)
T cd06594 70 YPGLDELIEELKARGIRVLTYINPYLADDG 99 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEecCceecCC
Confidence 499999999999999999988888877653
No 135
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.38 E-value=2.5e+02 Score=20.62 Aligned_cols=48 Identities=27% Similarity=0.230 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCC------------ceEEEeeecCCCCHHHHHHHHH-hcCCCEEEE
Q 016721 173 DEQAQALKTALEAKNLP------------VNVYVGMRYWYPFTEEAVQQIK-RDRITRLVV 220 (384)
Q Consensus 173 ~~qa~~L~~~L~~~g~~------------~~V~~aMrY~~P~i~eaL~~L~-~~G~~~Ivv 220 (384)
++.|+++.+.|...|.+ +.|.+|---..-..++++++|+ ..|.+-.|+
T Consensus 15 ~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~vv 75 (76)
T PF05036_consen 15 EENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDAFVV 75 (76)
T ss_dssp HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--EEE
T ss_pred HHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCCEEE
Confidence 44555555555544433 3444443333344455666666 556655543
No 136
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=21.32 E-value=2.1e+02 Score=26.16 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeecCCCC-HHHHHHHHHhcCCCEEEEEecC
Q 016721 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPF-TEEAVQQIKRDRITRLVVLPLY 224 (384)
Q Consensus 171 ~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~-i~eaL~~L~~~G~~~IvvlPLy 224 (384)
+.....+.+++.+++.|.+ +.+-..+..+. ..+.++.+...+++-+++.|..
T Consensus 13 ~~~~i~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (260)
T cd06286 13 YFSQLVDGIEKAALKHGYK--VVLLQTNYDKEKELEYLELLKTKQVDGLILCSRE 65 (260)
T ss_pred hHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3344556677777766644 44433344443 3367888888899999998864
No 137
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.25 E-value=7.7e+02 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=32.6
Q ss_pred CceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHH
Q 016721 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (384)
Q Consensus 189 ~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~ 244 (384)
+++|..+-- . +++++++.. .+.|++-++++| |.|...+-...++.+.+..+
T Consensus 69 ~~pvi~gv~--~-~t~~~i~~a~~a~~~Gad~v~~~p--P~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 69 RVPVLAGAG--Y-GTATAIAYAQAAEKAGADGILLLP--PYLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred CCCEEEecC--C-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 566777653 4 788887744 467999998877 44655554444555555443
No 138
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.91 E-value=7.8e+02 Score=23.93 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEE
Q 016721 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (384)
Q Consensus 170 ~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~Ivvl 221 (384)
.+.+.+++.+++.+.+.|.++.-...+..+.......+.++++.+++-|++.
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~ 206 (347)
T cd06340 155 EFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPA 206 (347)
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEc
Confidence 4667788888888887775533223344456678888999999999855543
No 139
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=20.69 E-value=2.1e+02 Score=28.50 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCceEEEee--ecCCCCHHHHHHHHHhcCCCEEEEEecCCCc
Q 016721 177 QALKTALEAKNLPVNVYVGM--RYWYPFTEEAVQQIKRDRITRLVVLPLYPQF 227 (384)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aM--rY~~P~i~eaL~~L~~~G~~~IvvlPLyPqy 227 (384)
++++ .|.+.|..+.|-.-. +.....+++.++.+.+.|++.+.+.|.||..
T Consensus 153 ~~I~-~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 153 EAIR-EAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHH-HHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 4444 344556554443221 3344567788888888999999999999864
No 140
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.65 E-value=4.3e+02 Score=26.15 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=33.2
Q ss_pred CCCceEEEeeecCCCCHHHHHHHH---HhcCCCEEEEEecCCCcccCcHHHHHHHHHHHHHH
Q 016721 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (384)
Q Consensus 187 g~~~~V~~aMrY~~P~i~eaL~~L---~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~~~ 245 (384)
+.+++|..| -+..+++++++.. .+.|++-++++|- .|-..+....++.+.+..+.
T Consensus 75 ~grvpvi~G--v~~~~t~~ai~~a~~A~~~Gad~vlv~~P--~y~~~~~~~l~~yf~~va~a 132 (309)
T cd00952 75 AGRVPVFVG--ATTLNTRDTIARTRALLDLGADGTMLGRP--MWLPLDVDTAVQFYRDVAEA 132 (309)
T ss_pred CCCCCEEEE--eccCCHHHHHHHHHHHHHhCCCEEEECCC--cCCCCCHHHHHHHHHHHHHh
Confidence 334556544 3456677877744 4569999988874 35555555555555555443
No 141
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.58 E-value=1.1e+03 Score=25.76 Aligned_cols=157 Identities=16% Similarity=0.265 Sum_probs=83.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceEEEeeecCCCCHHHHHHHHHhcCCCEEEEEecCCCcccCcHHHHHHHHHHHH
Q 016721 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (384)
Q Consensus 164 ggSPL~~~T~~qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eaL~~L~~~G~~~IvvlPLyPqyS~sTtgs~~~~~~~~~ 243 (384)
||-|...++++-.+++++-| ..++-.++-++.-|+.-+|++=-||. .|....+.+++..
T Consensus 339 gg~~~~~l~~en~Eal~sGl-----------------~NL~RHIenvr~FGvPvVVAINKFd~----DTe~Ei~~I~~~c 397 (557)
T PRK13505 339 GGVAKDDLKEENVEALKKGF-----------------ANLERHIENIRKFGVPVVVAINKFVT----DTDAEIAALKELC 397 (557)
T ss_pred CCCChhhccccCHHHHHHHH-----------------HHHHHHHHHHHHcCCCEEEEEeCCCC----CCHHHHHHHHHHH
Confidence 34455555555555555444 22445566667778888888888863 4455566666666
Q ss_pred HHhccCCCCCEEEecCCCCCHHHHHHHHHHHHHHHhhcCCCCceEEEEeeCCCchhhhccCCCchHHHHHHHHHHHHHHH
Q 016721 244 REDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (384)
Q Consensus 244 ~~~~~~~~~~l~~I~~~~~~p~yI~ala~~I~~~l~~~~~~~~~~LLFSaHGlP~~~v~~~GDpY~~q~~~T~~~i~~~L 323 (384)
++. .+++-+-+.|.+--.=---+++.+-+++++- . .+..++. ...++-.+ -.+.|++++
T Consensus 398 ~e~----Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~-~-s~f~~lY-----------~~d~sl~e----KIe~IAkkI 456 (557)
T PRK13505 398 EEL----GVEVALSEVWAKGGEGGVELAEKVVELIEEG-E-SNFKPLY-----------DDEDSLEE----KIEKIATKI 456 (557)
T ss_pred HHc----CCCEEEecccccCCcchHHHHHHHHHHHhcC-C-CCCceec-----------CCCCcHHH----HHHHHHHHc
Confidence 542 2345555566653322222333333444321 1 1111111 11233332 344455554
Q ss_pred hhcCCCCCeeEEEecCccCCCCCCCcHHHHHHHHHhCCCCeEEEE----eceeeecCc
Q 016721 324 KDRGINNDHTLAYQSRVGPVKWLKPYTDEVLVELGQKGVKSLLAI----PVRYTLLTE 377 (384)
Q Consensus 324 ~~~g~~~~~~lafQSr~G~~~WL~P~t~d~L~~L~~~Gvk~VvVv----P~gFVsd~~ 377 (384)
- | -..++ ..|...+.|+++.+.|..+.=|| |.||.-|..
T Consensus 457 Y--G------------A~~V~-~s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s~d~~ 499 (557)
T PRK13505 457 Y--G------------AKGVE-FSPKAKKQLKQIEKNGWDKLPVCMAKTQYSFSDDPK 499 (557)
T ss_pred c--C------------CCCee-ECHHHHHHHHHHHHcCCCCCCeEEEccCCCcCCChh
Confidence 1 1 12244 36778888888888888887776 667766654
No 142
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=20.57 E-value=82 Score=31.54 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=7.5
Q ss_pred HHHHHHHHHhcCCC
Q 016721 203 TEEAVQQIKRDRIT 216 (384)
Q Consensus 203 i~eaL~~L~~~G~~ 216 (384)
-++.++.|.+.|+.
T Consensus 309 r~~l~~~L~~~gI~ 322 (380)
T TIGR03588 309 RKEVFEALRAAGIG 322 (380)
T ss_pred HHHHHHHHHHCCCC
Confidence 34455556556653
No 143
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.55 E-value=2.5e+02 Score=27.51 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCCCee---EEEec---------CccCCCC---CCCcHHHHHHHHHhCCCCeEEEEecee
Q 016721 315 CIYLIMQRLKDRGINNDHT---LAYQS---------RVGPVKW---LKPYTDEVLVELGQKGVKSLLAIPVRY 372 (384)
Q Consensus 315 T~~~i~~~L~~~g~~~~~~---lafQS---------r~G~~~W---L~P~t~d~L~~L~~~Gvk~VvVvP~gF 372 (384)
.++.+++.+.+.|++.+.. +-|+. ..+.=.| .-|+..+.+++|.++|+|=++.+-|..
T Consensus 26 ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 26 EYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3445555555558864422 33543 1111122 349999999999999999888887764
No 144
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.34 E-value=7.9e+02 Score=23.77 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHh--cCCCceEEEeeecCC-CCHHHHHHHHHhcCCCEEEEEe
Q 016721 169 RKITDEQAQALKTALEA--KNLPVNVYVGMRYWY-PFTEEAVQQIKRDRITRLVVLP 222 (384)
Q Consensus 169 ~~~T~~qa~~L~~~L~~--~g~~~~V~~aMrY~~-P~i~eaL~~L~~~G~~~IvvlP 222 (384)
..+.+...+.+++.|.+ .|.++.-...+..+. +.....+.++++.+.+-|++..
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~ 209 (342)
T cd06329 153 YSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGN 209 (342)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcc
Confidence 35677778888888887 554433233344455 7778889999999998666544
No 145
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=20.18 E-value=60 Score=23.53 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=10.6
Q ss_pred EeeecCCCCHHHHHHHH
Q 016721 194 VGMRYWYPFTEEAVQQI 210 (384)
Q Consensus 194 ~aMrY~~P~i~eaL~~L 210 (384)
.||+|.+|.+++|++++
T Consensus 31 ~GF~F~~p~l~~AL~~l 47 (48)
T PF08338_consen 31 AGFQFRYPTLEEALRDL 47 (48)
T ss_dssp TT---S-SSHHHHHHH-
T ss_pred CCCcccCCCHHHHHhcc
Confidence 46788889999999986
No 146
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.06 E-value=2.5e+02 Score=27.83 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC-e--eEEEecCcc----CCCC---CCCcHHHHHHHHHhCCCCeEEEEeceeeecC
Q 016721 309 RDQMEECIYLIMQRLKDRGINND-H--TLAYQSRVG----PVKW---LKPYTDEVLVELGQKGVKSLLAIPVRYTLLT 376 (384)
Q Consensus 309 ~~q~~~T~~~i~~~L~~~g~~~~-~--~lafQSr~G----~~~W---L~P~t~d~L~~L~~~Gvk~VvVvP~gFVsd~ 376 (384)
++++++.++.+.++ +++-+ + ...|++.-| .-.| .-|+..+.+++|.++|+|=++.+.|....|+
T Consensus 28 q~~v~~~~~~~r~~----~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~ 101 (317)
T cd06599 28 QEALLEFIDKCREH----DIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDH 101 (317)
T ss_pred HHHHHHHHHHHHHc----CCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCC
Confidence 55666666665554 77543 2 235665411 1133 3599999999999999998888887765543
Done!