BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016722
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53800|FDFT_NICBE Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1
Length = 411
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/376 (84%), Positives = 345/376 (91%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGT 60
MGSL A+L++P+DLYPL+KLK+A+R AEKQIPP P+W FCYSMLHKVSRSFALVIQQL
Sbjct: 1 MGSLRAILKNPEDLYPLVKLKLAARHAEKQIPPSPNWGFCYSMLHKVSRSFALVIQQLPV 60
Query: 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD 120
+LR+AVCIFYLVLRALDTVEDDTSIPTDVKVPILI+FH+HVYDREWHFSCGTKEYKVLMD
Sbjct: 61 ELRDAVCIFYLVLRALDTVEDDTSIPTDVKVPILISFHQHVYDREWHFSCGTKEYKVLMD 120
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL 180
QFHHVSTAFLEL K YQ AIEDIT RMGAGMAKFICKEVE+ DDYDEYC+YVAGLVGLGL
Sbjct: 121 QFHHVSTAFLELRKHYQQAIEDITMRMGAGMAKFICKEVETTDDYDEYCHYVAGLVGLGL 180
Query: 181 SKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL 240
SKLF+AS EDLA DSLSNSMGLFLQKTNIIRDYLEDINE+PKCRMFWPREIWSKYVNKL
Sbjct: 181 SKLFHASEKEDLASDSLSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVNKL 240
Query: 241 EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALC 300
E+LKYE+NS KAVQCLNDMVTNAL HVEDCL YMSALRD +IFRFCAIPQ+MAIGTLA+C
Sbjct: 241 EELKYEDNSAKAVQCLNDMVTNALPHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLAMC 300
Query: 301 YNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRV 360
Y+NIEVFRGVVKMRRGLTAKVIDRT + DVY AF+DFS +LK K+N NDPNATKTL R+
Sbjct: 301 YDNIEVFRGVVKMRRGLTAKVIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRL 360
Query: 361 EAIQKACMDSGVLNKR 376
E I K C DSG LNKR
Sbjct: 361 EVILKTCRDSGTLNKR 376
>sp|P53799|FDFT_ARATH Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1
Length = 410
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/378 (80%), Positives = 346/378 (91%), Gaps = 2/378 (0%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGT 60
MGSL +LR+PDD+YPLLK+K A +AEKQIPPEPHW FCYSMLHKVSRSF+LVIQQL T
Sbjct: 1 MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLNT 60
Query: 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD 120
+LRNAVC+FYLVLRALDTVEDDTSIPTD KVPILIAFHRH+YD +WH+SCGTKEYK+LMD
Sbjct: 61 ELRNAVCVFYLVLRALDTVEDDTSIPTDEKVPILIAFHRHIYDTDWHYSCGTKEYKILMD 120
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL 180
QFHHVS AFLEL KGYQ+AIE+IT+RMGAGMAKFIC+EVE++DDYDEYC+YVAGLVGLGL
Sbjct: 121 QFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL 180
Query: 181 SKLFYASGTEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
SKLF A+G+E L PD ++SNSMGLFLQKTNIIRDYLEDINEIPK RMFWPREIW KY +
Sbjct: 181 SKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYAD 240
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
KLEDLKYEEN++K+VQCLN+MVTNALMH+EDCLKYM +LRD +IFRFCAIPQIMAIGTLA
Sbjct: 241 KLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLA 300
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
LCYNN +VFRGVVK+RRGLTAKVIDRT M DVY AFYDFS +LK K++KNDPNA+KTL+
Sbjct: 301 LCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLN 360
Query: 359 RVEAIQKACMDSGVLNKR 376
R+EA+QK C D+GVL R
Sbjct: 361 RLEAVQKLCRDAGVLQNR 378
>sp|G0Y287|BOSS_BOTBR Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2
PE=1 SV=1
Length = 465
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/374 (50%), Positives = 244/374 (65%), Gaps = 8/374 (2%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGT 60
M L VL+HPD++ P+L++ + +A++ +P AFCY ML +VSRSF++VIQQL
Sbjct: 1 MVKLVEVLQHPDEIVPILQMLHKTYRAKRSYK-DPGLAFCYGMLQRVSRSFSVVIQQLPD 59
Query: 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD 120
+LR+ +C+FYL+LRALDTVEDD ++P +VK+P+L FH H++DR W CG Y LM+
Sbjct: 60 ELRHPICVFYLILRALDTVEDDMNLPNEVKIPLLRTFHEHLFDRSWKLKCGYGPYVDLME 119
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICK-EVESIDDYDEYCYYVAGLVGLG 179
+ V+ FL L G Q+ I D T+RMG GMA FI K EV S+ +YD YC+YVAGLVG
Sbjct: 120 NYPLVTDVFLTLSPGAQEVIRDSTRRMGNGMADFIGKDEVHSVAEYDLYCHYVAGLVGSA 179
Query: 180 LSKLFYASGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKY 236
++K+F SG E +A L+N+MG FLQKTN+IRDYLEDINE P RMFWPREIW KY
Sbjct: 180 VAKIFVDSGLEKENLVAEVDLANNMGQFLQKTNVIRDYLEDINEEPAPRMFWPREIWGKY 239
Query: 237 VNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGT 296
+L D K N AVQCLN MVT+AL H E L + L++ I R C IP++M + T
Sbjct: 240 AQELADFKDPANEKAAVQCLNHMVTDALRHCEIGLNVIPLLQNIGILRSCLIPEVMGLRT 299
Query: 297 LALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKIN---KNDPNA 353
L LCYNN +VFRGVVKMRRG TAK+ + Y + +N L+ K DP
Sbjct: 300 LTLCYNNPQVFRGVVKMRRGETAKLFMSIYDKRSFYQTYLRLANELEAKCKGEASGDPMV 359
Query: 354 TKTLSRVEAIQKAC 367
TL V IQK+C
Sbjct: 360 ATTLKHVHGIQKSC 373
>sp|Q9SDW9|BSS_BOTBR Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1
Length = 461
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/371 (51%), Positives = 250/371 (67%), Gaps = 12/371 (3%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVC 67
L++PD+L P+L++ A + + + P + FCY +L+ VSRSFA+VIQQL LR+ VC
Sbjct: 11 LQNPDELIPVLRMIYADKFGKIK-PKDEDRGFCYEILNLVSRSFAIVIQQLPAQLRDPVC 69
Query: 68 IFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG-TKEYKVLMDQFHHVS 126
IFYLVLRALDTVEDD I K+P+L F+ + DR + + G K+Y L+DQ+ V+
Sbjct: 70 IFYLVLRALDTVEDDMKIAATTKIPLLRDFYEKISDRSFRMTAGDQKDYIRLLDQYPKVT 129
Query: 127 TAFLELGKGYQDAIEDITKRMGAGMAKFICKEV-ESIDDYDEYCYYVAGLVGLGLSKLFY 185
+ FL+L Q+ I DITKRMG GMA F+ K V +++ DYD YC+YVAG+VGLGLS+LF
Sbjct: 130 SVFLKLTPREQEIIADITKRMGNGMADFVHKGVPDTVGDYDLYCHYVAGVVGLGLSQLFV 189
Query: 186 ASGTEDLA---PDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLED 242
ASG + + + LSN MGLFLQKTNIIRDY EDINE+P RMFWPREIW KY N L +
Sbjct: 190 ASGLQSPSLTRSEDLSNHMGLFLQKTNIIRDYFEDINELPAPRMFWPREIWGKYANNLAE 249
Query: 243 LKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYN 302
K N A+ CLN+MVT+AL H CL+YMS + D IF FCAIPQ MA GTL+LCYN
Sbjct: 250 FKDPANKAAAMCCLNEMVTDALRHAVYCLQYMSMIEDPQIFNFCAIPQTMAFGTLSLCYN 309
Query: 303 NIEVFRG---VVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKIN---KNDPNATKT 356
N +F G VK+RRG TAK++ +NNM +Y F +F+ L+ + N DP+ T T
Sbjct: 310 NYTIFTGPKAAVKLRRGTTAKLMYTSNNMFAMYRHFLNFAEKLEVRCNTETSEDPSVTTT 369
Query: 357 LSRVEAIQKAC 367
L + I+ AC
Sbjct: 370 LEHLHKIKAAC 380
>sp|P53798|FDFT_MOUSE Squalene synthase OS=Mus musculus GN=Fdft1 PE=2 SV=2
Length = 416
Score = 351 bits (900), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 181/383 (47%), Positives = 246/383 (64%), Gaps = 13/383 (3%)
Query: 8 LRHPDDLYPLLKLKMASRQ----AEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLR 63
L HP++ Y LL+ +M R+ Q CY L++ SRSFA VIQ L D+R
Sbjct: 7 LGHPEEFYNLLRFRMGGRRNFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGDIR 66
Query: 64 NAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFH 123
+A+C+FYLVLRALDTVEDD SI + K+P+L FH +YD EW F+ ++ + +++ F
Sbjct: 67 HAICVFYLVLRALDTVEDDMSISVEKKIPLLCNFHTFLYDPEWRFTESKEKDRQVLEDFP 126
Query: 124 HVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKL 183
+S F L + YQ I+DI RMG GMA+F+ K+V S D+D+YC+YVAGLVG+GLS+L
Sbjct: 127 TISLEFRNLAEKYQTVIDDICHRMGCGMAEFVDKDVTSKQDWDKYCHYVAGLVGIGLSRL 186
Query: 184 FYASGTED--LAPD-SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL 240
F AS ED + D +NSMGLFLQKTNIIRDYLED E R FWP+E+W +Y+ KL
Sbjct: 187 FSASEFEDPIVGEDIECANSMGLFLQKTNIIRDYLEDQQE---GRKFWPQEVWGRYIKKL 243
Query: 241 EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALC 300
ED EN D AVQCLN+++TN L H+ D L Y+S LR+ ++F FCAIPQ+MAI TLA C
Sbjct: 244 EDFAKPENVDVAVQCLNELITNTLQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATLAAC 303
Query: 301 YNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRV 360
YNN +VF+GVVK+R+G ++ NM V Y + + +I +DP+++KT +
Sbjct: 304 YNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTKQVI 363
Query: 361 EAIQKACMDSGVLNKRFKILHYS 383
I+ + + L R HYS
Sbjct: 364 SKIRTQNLPNCQLISR---SHYS 383
>sp|Q02769|FDFT_RAT Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1
Length = 416
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 180/385 (46%), Positives = 249/385 (64%), Gaps = 17/385 (4%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y LL+ +M R+ IP + CY L + SRSFA VIQ L D
Sbjct: 7 LGHPEEFYNLLRFRMGGRR--NFIPKMDRNSLSNSLKTCYKYLDQTSRSFAAVIQALDGD 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVC+FYL+LRA+DTVEDD +I + K+P+L FH +Y+ EW F+ ++++V+++
Sbjct: 65 IRHAVCVFYLILRAMDTVEDDMAISVEKKIPLLRNFHTFLYEPEWRFTESKEKHRVVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI RMG GMA+F+ K+V S D+D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIADICHRMGCGMAEFLNKDVTSKQDWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED E R FWP+E+W KYV
Sbjct: 185 RLFSASEFEDPIVGEDTECANSMGLFLQKTNIIRDYLEDQQE---GRQFWPQEVWGKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
KLED EN D AV+CLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA
Sbjct: 242 KLEDFVKPENVDVAVKCLNELITNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLA 301
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
CYNN +VF+GVVK+R+G ++ NM V Y + + ++ +DP+A+K
Sbjct: 302 ACYNNHQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAKQ 361
Query: 359 RVEAIQKACMDSGVLNKRFKILHYS 383
+ I+ + + L R HYS
Sbjct: 362 LISNIRTQSLPNCQLISR---SHYS 383
>sp|Q54DR1|FDFT_DICDI Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1
Length = 416
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 175/371 (47%), Positives = 242/371 (65%), Gaps = 12/371 (3%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPPE--PHWAFCYSMLHKVSRSFALVIQQLGTDLRNA 65
L HPD+ LLK+ K E + +CY +L+K SRSFA VI +L L++A
Sbjct: 7 LAHPDEFLSLLKIGYTESFKPKSQLKENLGNKEWCYELLNKTSRSFAFVINELEPSLKDA 66
Query: 66 VCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWH-FSCG-TKEYKVLMDQFH 123
+CIFYLVLR LDT+EDDT++ + K+P+L +F +Y + F G + K L++ F
Sbjct: 67 ICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNNDEKNLVENFD 126
Query: 124 HVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKL 183
V FL LG GY I DIT+RM GM++F+ K V ++ ++D YC+YVAGLVG+GLSK+
Sbjct: 127 KVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAGLVGIGLSKI 186
Query: 184 FYASGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL 240
F+ASG E D SN MGLFLQKTNIIRDYLEDINE R+FWPR++W++Y L
Sbjct: 187 FHASGLESEWFATADDESNQMGLFLQKTNIIRDYLEDINE---KRIFWPRDVWARYTLHL 243
Query: 241 EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALC 300
E+ K + A+ CLND++TNAL H L YMS L++ + FCAIPQ+MAIGTL C
Sbjct: 244 ENFKEAKYQIPALHCLNDLITNALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNAC 303
Query: 301 YNNIEVFRGVVKMRRGLTAKVID--RTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
YNN VF GVVK+R+G A ++D ++ +T Y F+ F+N ++ K+ NDP+A KT+
Sbjct: 304 YNNYNVFTGVVKIRKGQRALIVDAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQ 363
Query: 359 RVEAIQKACMD 369
+E+I+K C++
Sbjct: 364 HLESIEKLCIE 374
>sp|Q32KR6|FDFT_BOVIN Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1
Length = 417
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 180/385 (46%), Positives = 247/385 (64%), Gaps = 17/385 (4%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPP------EPHWAFCYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y LL+ +M R+ K IP CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLLRFQMGGRR--KVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+R+AVCIFYLVLRALDT+EDD +I + KVP+L FH ++Y+ +W F+ ++ + +++
Sbjct: 65 MRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I D+ ++MG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED E R FWP+E WSKYV
Sbjct: 185 RLFPASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQRE---GREFWPQETWSKYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
KL D EN D AVQCLN+++TN L H+ D + Y+S LR+ +IF FCAIPQ+MAI TLA
Sbjct: 242 KLGDFAKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLA 301
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
CYNN +VF+GVVK+R+G ++ NM V + + + +I +DP +TKT
Sbjct: 302 ACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQQ 361
Query: 359 RVEAIQKACMDSGVLNKRFKILHYS 383
+ I+ + + L R HYS
Sbjct: 362 IISTIRTQNLPNCQLVSRS---HYS 383
>sp|Q5R6U3|FDFT_PONAB Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1
Length = 417
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/385 (45%), Positives = 245/385 (63%), Gaps = 17/385 (4%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPP------EPHWAFCYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y L++ ++ ++ K +P CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++
Sbjct: 65 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI +RMG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV
Sbjct: 185 RLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA
Sbjct: 242 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLA 301
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
CYNN +VF+G VK+R+G ++ NM V Y + + +I +DP+++KT
Sbjct: 302 ACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQ 361
Query: 359 RVEAIQKACMDSGVLNKRFKILHYS 383
+ I+ + + L R HYS
Sbjct: 362 IISTIRTQNLPNCQLISRS---HYS 383
>sp|P37268|FDFT_HUMAN Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1
Length = 417
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/385 (45%), Positives = 245/385 (63%), Gaps = 17/385 (4%)
Query: 8 LRHPDDLYPLLKLKMASRQAEKQIPP------EPHWAFCYSMLHKVSRSFALVIQQLGTD 61
L HP++ Y L++ ++ ++ K +P CY L++ SRSFA VIQ L +
Sbjct: 7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGE 64
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
+RNAVCIFYLVLRALDT+EDD +I + KVP+L FH +Y +W F ++ + +++
Sbjct: 65 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLED 124
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
F +S F L + YQ I DI +RMG GMA+F+ K V S ++D+YC+YVAGLVG+GLS
Sbjct: 125 FPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLS 184
Query: 182 KLFYASGTED--LAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+LF AS ED + D+ +NSMGLFLQKTNIIRDYLED R FWP+E+WS+YV
Sbjct: 185 RLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVK 241
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
KL D EN D AVQCLN+++TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA
Sbjct: 242 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLA 301
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
CYNN +VF+G VK+R+G ++ NM V Y + + +I +DP+++KT
Sbjct: 302 ACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQ 361
Query: 359 RVEAIQKACMDSGVLNKRFKILHYS 383
+ I+ + + L R HYS
Sbjct: 362 IISTIRTQNLPNCQLISRS---HYS 383
>sp|G0Y288|BOCS_BOTBR Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1
Length = 383
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/369 (41%), Positives = 234/369 (63%), Gaps = 7/369 (1%)
Query: 3 SLAAVLRHPDDLYPLLKLK-MASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTD 61
L VL+HP ++ PLL++ MA R+ K P +P+ A+C+ L KVSRS+ LVIQQL
Sbjct: 2 KLREVLQHPGEIIPLLQMMVMAYRRKRK--PQDPNLAWCWETLIKVSRSYVLVIQQLPEV 59
Query: 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQ 121
L++ +C+ YLVLR LDT++DD +IP + +VP+L+ ++ H+ D W CG +Y L+++
Sbjct: 60 LQDPICVNYLVLRGLDTLQDDMAIPAEKRVPLLLDYYNHIGDITWKPPCGYGQYVELIEE 119
Query: 122 FHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLS 181
+ V+ FL+L K Q I D+ R+GA M F+ ++V ++ D D Y + G V + L+
Sbjct: 120 YPRVTKEFLKLNKQDQQFITDMCMRLGAEMTVFLKRDVLTVPDLDLYAFTNNGPVAICLT 179
Query: 182 KLFYASGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
KL+ D L + LS M +FL K N+IRD ED+ E P R++WP+EIW KY+
Sbjct: 180 KLWVDRKFADPKLLDREDLSGHMAMFLGKINVIRDIKEDVLEDPP-RIWWPKEIWGKYLK 238
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
L D+ E +A+ CLND++T+AL H+E CL+YM + D +F+FCA+P++M++ T++
Sbjct: 239 DLRDIIKPEYQKEALACLNDILTDALRHIEPCLQYMEMVWDEGVFKFCAVPELMSLATIS 298
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLS 358
+CYNN +VF GVVKMRRG TAK+ NM +Y +F + ++ K + DPN T+
Sbjct: 299 VCYNNPKVFTGVVKMRRGETAKLFLSVTNMPALYKSFSAIAEEMEAKCVREDPNFALTVK 358
Query: 359 RVEAIQKAC 367
R++ +Q C
Sbjct: 359 RLQDVQALC 367
>sp|G0Y286|PSDS_BOTBR Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1
PE=1 SV=1
Length = 403
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 217/375 (57%), Gaps = 6/375 (1%)
Query: 2 GSLAAVLRHPDDLYPLLKLKMASRQAEK-QIPPEPHWAFCYSMLHKVSRSFALVIQQLGT 60
G + +++HP++ LL+L + + IP EP AFCY+ LH VS+ F + +L
Sbjct: 8 GVMKDLVKHPNEFPYLLQLAATTYGSPAAPIPKEPDRAFCYNTLHTVSKGFPRFVMRLPQ 67
Query: 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD 120
+L++ +CIFYL+LRALDTVEDD ++ ++ K+ +L FH H DR W Y LM+
Sbjct: 68 ELQDPICIFYLLLRALDTVEDDMNLKSETKISLLRVFHEHCSDRNWSMKSDYGIYADLME 127
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL 180
+F V + +L Q + K MG GMA FI K++ ++D+YD YC+YVAG G+ +
Sbjct: 128 RFPLVVSVLEKLPPATQQTFRENVKYMGNGMADFIDKQILTVDEYDLYCHYVAGSCGIAV 187
Query: 181 SKLFYASGTEDLAPDS--LSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVN 238
+K+ DS SNS+GL LQK NII DY EDINE P+ RMFWP+EIW KY
Sbjct: 188 TKVIVQFNLATPEADSYDFSNSLGLLLQKANIITDYNEDINEEPRPRMFWPQEIWGKYAE 247
Query: 239 KLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLA 298
KL D EN D AV+CLN MVT+A+ H+E LK M D +FR A+ + A G L+
Sbjct: 248 KLADFNEPENIDTAVKCLNHMVTDAMRHIEPSLKGMVYFTDKTVFRALALLLVTAFGHLS 307
Query: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINK---NDPNATK 355
YNN VF+ V+ R+G A+++ + N+ ++ +N + + + NDP
Sbjct: 308 TLYNNPNVFKEKVRQRKGRIARLVMSSRNVPGLFRTCLKLANNFESRCKQETANDPTVAM 367
Query: 356 TLSRVEAIQKACMDS 370
T+ R+++IQ C D
Sbjct: 368 TIKRLQSIQATCRDG 382
>sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=erg9 PE=1 SV=1
Length = 460
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 222/356 (62%), Gaps = 21/356 (5%)
Query: 40 CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHR 99
CY +L SRSFA+VI++L +R AV IFYLVLR LDTVEDD ++P D K+PIL F++
Sbjct: 38 CYQLLDMTSRSFAVVIKELPNGIREAVMIFYLVLRGLDTVEDDMTLPLDKKLPILRDFYK 97
Query: 100 HVYDREWHF--SCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICK 157
+ W F S ++ + L+ +F V +L L +GY++ I +ITK MG GMA +
Sbjct: 98 TIEVEGWTFNESGPNEKDRQLLVEFDVVIKEYLNLSEGYRNVISNITKEMGDGMAYYASL 157
Query: 158 -------EVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPD-----SLSNSMGLFL 205
VE+I+D+++YC+YVAGLVG+GLS+LF S ED PD ++SNS+GLFL
Sbjct: 158 AEKNDGFSVETIEDFNKYCHYVAGLVGIGLSRLFAQSKLED--PDLAHSQAISNSLGLFL 215
Query: 206 QKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265
QK NIIRDY ED ++ R FWPREIWSKY + DL +NS+KA++CL+DM NAL
Sbjct: 216 QKVNIIRDYREDFDD---NRHFWPREIWSKYTSSFGDLCLPDNSEKALECLSDMTANALT 272
Query: 266 HVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRT 325
H D L Y+S L+ IF FCAIPQ+MAI TLA + N +VF+ VK+R+G ++I +
Sbjct: 273 HATDALVYLSQLKTQEIFNFCAIPQVMAIATLAAVFRNPDVFQTNVKIRKGQAVQIILHS 332
Query: 326 NNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRFKILH 381
N+ +V F ++ + K DPN K I++ + + +RF+ ++
Sbjct: 333 VNLKNVCDLFLRYTRDIHYKNTPKDPNFLKISIECGKIEQ--VSESLFPRRFREMY 386
>sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1
Length = 448
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/385 (41%), Positives = 230/385 (59%), Gaps = 22/385 (5%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQA---EKQIPPEPHWAFCYSMLHKVSRSFALVIQQ 57
MG +L HP +L +++L RQ K+ + CY +L+ SRSFA VI++
Sbjct: 1 MGKFLQLLSHPTELKAVIQL-FGFRQPLHPGKRDVNDKELGRCYELLNLTSRSFAAVIEE 59
Query: 58 LGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF-SCGTKEY- 115
L +LR+AV IFYLVLRALDT+EDD +I + +K+P+L F + + W F G E
Sbjct: 60 LHPELRDAVMIFYLVLRALDTIEDDMTIKSSIKIPLLREFDTKLNTKNWTFDGYGPNEKD 119
Query: 116 KVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYC 169
+ ++ +F + + L YQD I+ IT +MG GMA +I E V +++DY+ YC
Sbjct: 120 RTVLVEFDKILNVYHRLKPQYQDIIKSITFKMGNGMADYILDEEFNVYGVATVEDYNLYC 179
Query: 170 YYVAGLVGLGLSKLFYAS--GTEDLAPDSLS--NSMGLFLQKTNIIRDYLEDINEIPKCR 225
+YVAGLVG GL+ LF + G + L ++ + +SMGLFLQKTNIIRDY ED+ + R
Sbjct: 180 HYVAGLVGEGLTNLFVLANFGDKTLTENNFAKADSMGLFLQKTNIIRDYHEDLQD---GR 236
Query: 226 MFWPREIWSKYVNKLEDLKYEENSDK---AVQCLNDMVTNALMHVEDCLKYMSALRDHAI 282
FWPREIWSKY L+D + K V C+N++V NAL HV DCL Y+S ++D +
Sbjct: 237 SFWPREIWSKYTENLQDFHKVKTPAKEFAGVSCINELVLNALGHVTDCLDYLSLVKDPSS 296
Query: 283 FRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNIL 342
F FCAIPQ+MA+ TLA YNN +V GVVK+R+G T ++I + + V F ++ ++
Sbjct: 297 FSFCAIPQVMAVATLAEVYNNPKVLHGVVKIRKGTTCRLILESRTLPGVVKIFKEYIQVI 356
Query: 343 KPKINKNDPNATKTLSRVEAIQKAC 367
K + DPN K + I++ C
Sbjct: 357 NHKSSVRDPNYLKIGIKCGEIEQYC 381
>sp|P29704|FDFT_YEAST Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ERG9 PE=1 SV=2
Length = 444
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 224/379 (59%), Gaps = 18/379 (4%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQI---PPEPHWAFCYSMLHKVSRSFALVIQQ 57
MG L + HP ++ LKLK R I P+ C+ +L+ SRSFA VI++
Sbjct: 1 MGKLLQLALHPVEMKAALKLKFC-RTPLFSIYDQSTSPYLLHCFELLNLTSRSFAAVIRE 59
Query: 58 LGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK- 116
L +LRN V +FYL+LRALDT+EDD SI D+K+ +L FH + +W F + K
Sbjct: 60 LHPELRNCVTLFYLILRALDTIEDDMSIEHDLKIDLLRHFHEKLLLTKWSFDGNAPDVKD 119
Query: 117 -VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYC 169
++ F + F +L YQ+ I++IT++MG GMA +I E ++++ DYD YC
Sbjct: 120 RAVLTDFESILIEFHKLKPEYQEVIKEITEKMGNGMADYILDENYNLNGLQTVHDYDVYC 179
Query: 170 YYVAGLVGLGLSKLFYAS--GTEDL-APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM 226
+YVAGLVG GL++L + E L + + L SMGLFLQKTNIIRDY ED+ + R
Sbjct: 180 HYVAGLVGDGLTRLIVIAKFANESLYSNEQLYESMGLFLQKTNIIRDYNEDLVD---GRS 236
Query: 227 FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFC 286
FWP+EIWS+Y +L+D EN + C+N +V NAL HV D L Y++ + + + F+FC
Sbjct: 237 FWPKEIWSQYAPQLKDFMKPENEQLGLDCINHLVLNALSHVIDVLTYLAGIHEQSTFQFC 296
Query: 287 AIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKI 346
AIPQ+MAI TLAL +NN EV G VK+R+G T +I ++ + F + +K K+
Sbjct: 297 AIPQVMAIATLALVFNNREVLHGNVKIRKGTTCYLILKSRTLRGCVEIFDYYLRDIKSKL 356
Query: 347 NKNDPNATKTLSRVEAIQK 365
DPN K ++ I++
Sbjct: 357 AVQDPNFLKLNIQISKIEQ 375
>sp|Q752X9|FDFT_ASHGO Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1
Length = 441
Score = 271 bits (693), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 215/373 (57%), Gaps = 25/373 (6%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPE-----PHWAFCYSMLHKVSRSFALVI 55
MG + + HP +L LKLK E P + CY +L + SRSFA VI
Sbjct: 1 MGKVVQLFTHPLELKAALKLKFLR---EPLYPADDTQGSAELKRCYQLLQRTSRSFAAVI 57
Query: 56 QQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF--SCGTK 113
+L +LRNAV +FYL+LRALDTVEDD +I VKVP+L F + + W F + T+
Sbjct: 58 MELHPELRNAVMLFYLILRALDTVEDDMTISPKVKVPLLREFDQKLKLDTWSFDGNAKTE 117
Query: 114 EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDE 167
+ + ++ +F + F +L YQ I DIT +MG GMA +I E +E+I DYD
Sbjct: 118 KDRDVLVEFSTILAEFHKLKPEYQQVIADITHKMGNGMADYILDEKFNLSGLETIQDYDR 177
Query: 168 YCYYVAGLVGLGLSKL-----FYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIP 222
YC+YVAGLVG GL+ L F + G +PD L SMGLFLQKTNIIRDY ED+ +
Sbjct: 178 YCHYVAGLVGDGLTHLIMLAKFSSPGLYYDSPD-LYESMGLFLQKTNIIRDYAEDLAD-- 234
Query: 223 KCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAI 282
R FWP+EIWS Y + L EN+ V C+N +V NAL HV+ L Y+++LR+ +
Sbjct: 235 -GRSFWPKEIWSHYADDLASFSKPENATAGVYCINHLVLNALGHVQHVLTYLASLREQSS 293
Query: 283 FRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNIL 342
F+FCAIPQ+MAI TLAL + N V + VK+R+G T +I ++ F + +
Sbjct: 294 FQFCAIPQVMAIATLALVFGNERVLQTSVKIRKGTTCYLILKSRTFQGCVEIFEHYLRDI 353
Query: 343 KPKINKNDPNATK 355
+ ++ DPN K
Sbjct: 354 RKRLTVADPNYLK 366
>sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SQS1 PE=3 SV=1
Length = 445
Score = 271 bits (692), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 219/368 (59%), Gaps = 22/368 (5%)
Query: 1 MGSLAAVLRHPDDL-----YPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVI 55
MG L +L HP +L Y L + + R K+ CY +L SRSFA VI
Sbjct: 1 MGKLIELLLHPSELSAAIHYKLWRQPLHPRDLSKE---STELRRCYELLDVCSRSFAAVI 57
Query: 56 QQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF--SCGTK 113
++L ++R+AV +FYL+LRALDT+EDD ++ D+K+PIL F + + W F S +
Sbjct: 58 RELHPEVRDAVMLFYLILRALDTIEDDMTLSRDIKIPILRDFTKCMKTPGWKFTDSDPNE 117
Query: 114 EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDE 167
+V++ +F V T F +L YQ+ I DIT RMG GMA ++ + V++I YD
Sbjct: 118 RDRVVLQEFPVVMTEFNKLKPKYQEVIYDITDRMGNGMADYVIDDDFNNNGVDTIAAYDL 177
Query: 168 YCYYVAGLVGLGLSKL--FYASGTEDLAPDS-LSNSMGLFLQKTNIIRDYLEDINEIPKC 224
YC++VAG+VG GL+++ GT+ L + L SMGLFLQK NIIRDY EDI+
Sbjct: 178 YCHHVAGIVGEGLTRITILAGFGTDVLHENPRLQESMGLFLQKVNIIRDYREDID---VN 234
Query: 225 RMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFR 284
R FWPREIW KY ++ D K + S KA+ C +D+V NAL H DCL Y+ + D + F
Sbjct: 235 RAFWPREIWHKYAEEMRDFKDPKYSKKALHCTSDLVANALGHATDCLDYLDNVTDPSTFT 294
Query: 285 FCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKP 344
FCAIPQ+MAI TL L Y N +VF+ VK+R+G T +I +N++ V F ++ +
Sbjct: 295 FCAIPQVMAIATLDLVYRNPDVFQKNVKLRKGTTVSLILEASNVSGVCDIFTRYARKVYK 354
Query: 345 KINKNDPN 352
K + NDPN
Sbjct: 355 KSDPNDPN 362
>sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1
Length = 443
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/377 (40%), Positives = 221/377 (58%), Gaps = 19/377 (5%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF--CYSMLHKVSRSFALVIQQL 58
MG L + HPD+L +++ K+ + + P CY +L+ SRSFA VI++L
Sbjct: 1 MGKLLQLALHPDELASIVQFKLFRKNENARNPATESAELIRCYELLNLTSRSFAAVIEEL 60
Query: 59 GTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK-- 116
+LRN + +FYLVLRALDTVE D SI VK+P+L FH + ++W F + K
Sbjct: 61 HPELRNVIMVFYLVLRALDTVEVDMSIENSVKLPVLRQFHEKLDTKDWTFDGNSPNEKDR 120
Query: 117 VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCY 170
++ +F + + EL YQ I++IT++MG GMA +I E + +I+DYD YCY
Sbjct: 121 CVLVEFDRILGQYHELKPQYQKVIKEITEKMGNGMADYIENENFNSNGLLTIEDYDLYCY 180
Query: 171 YVAGLVGLGLSKLFYAS--GTEDLAPD-SLSNSMGLFLQKTNIIRDYLEDINEIPKCRMF 227
YVAGLVG GL++L + G +L+ + L SMGLFLQKTNIIRDY ED + R F
Sbjct: 181 YVAGLVGDGLTQLIVLAKFGNSELSVNKQLFKSMGLFLQKTNIIRDYEEDQVD---GRAF 237
Query: 228 WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCA 287
WP+EIW KY N+L D EN + + C++++V NAL HV D L+Y++ + + F FCA
Sbjct: 238 WPKEIWGKYANELSDFMKPENQSQGLWCISELVCNALDHVIDVLQYLALVEEQTSFNFCA 297
Query: 288 IPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKIN 347
IPQ+MAI TL L + N +V VK+R+G T +I + + F + + K +
Sbjct: 298 IPQVMAIATLELVFQNPQVLTQHVKIRKGTTVSLILESRTLEGCARIFRRYLRKIHHKSH 357
Query: 348 KNDPNATK---TLSRVE 361
+DPN + T+ ++E
Sbjct: 358 PSDPNYLRLGITIGKIE 374
>sp|Q9HGZ6|FDFT_CANGA Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2
Length = 443
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 223/381 (58%), Gaps = 19/381 (4%)
Query: 1 MGSLAAVLRHPDDLYPLLKLKMASRQ--AEKQIPPEPHWAFCYSMLHKVSRSFALVIQQL 58
MG + + HP +L LKLK + + P CY +L+ SRSFA VI +L
Sbjct: 1 MGKVLDLALHPLELRAALKLKFIRQPLFSTNDTRATPQLERCYELLNLTSRSFAAVIMEL 60
Query: 59 GTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG--TKEYK 116
+LRN + +FYL+LRALDTVEDD +I +KV +L F + +W F ++ +
Sbjct: 61 HPELRNVIMVFYLILRALDTVEDDMTIDPQLKVKVLREFDSKLDTTDWSFDGNDLKEKDR 120
Query: 117 VLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCY 170
V++ +F + + +L YQ I+ IT MG GMA +I E V+++ DYD+YC+
Sbjct: 121 VVLTEFPCILGEYHKLKPEYQKVIKRITGLMGNGMADYILDENFNLNGVQTVKDYDKYCH 180
Query: 171 YVAGLVGLGLSKLFYASG--TEDLAPD----SLSNSMGLFLQKTNIIRDYLEDINEIPKC 224
YVAGLVG GL++L +G ++DL L SMGLFLQKTNIIRDY ED+++
Sbjct: 181 YVAGLVGDGLTELIVLAGFGSDDLYHGKNSFQLYESMGLFLQKTNIIRDYAEDLDD---G 237
Query: 225 RMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFR 284
R FWP+EIWS+Y KL D + +N+ K V C+N +V NAL HV D L Y+S++ + + F+
Sbjct: 238 RSFWPKEIWSEYATKLTDFRDPKNTQKGVDCINHLVLNALTHVIDVLTYLSSIHEQSSFQ 297
Query: 285 FCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKP 344
FCAIPQ+MAI TLA +NN EV R VK+R+G T +I + + F + +K
Sbjct: 298 FCAIPQVMAIATLAKVFNNPEVLRKNVKIRKGTTCDLILNSRTLKGCVDIFQYYLRDMKQ 357
Query: 345 KINKNDPNATKTLSRVEAIQK 365
++ DPN K +V I++
Sbjct: 358 RLPVEDPNYLKFNIQVAKIEQ 378
>sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=ERG9 PE=3 SV=2
Length = 572
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 202/356 (56%), Gaps = 31/356 (8%)
Query: 40 CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHR 99
C+ L SRSFA VI++L +L +C+FYLVLRALDTVEDD +IP K+P+L+ F++
Sbjct: 50 CWGFLDLTSRSFAAVIKELKGELSRVICLFYLVLRALDTVEDDMTIPAQRKIPLLVNFYK 109
Query: 100 HVYDREWHFS-CGTKEY-KVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFI-- 155
++ W+F+ G E + L+ +F V + L GY+ I DIT +MGAGMA +I
Sbjct: 110 YLEQPGWNFTESGPNEKDRQLLVEFDKVIAEYQLLDVGYKTVISDITAKMGAGMASYIEL 169
Query: 156 ----CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPD---SLSNSMGLFLQKT 208
+V +D YC++VAGLVG GLS+LF S E LSN MGLFLQKT
Sbjct: 170 SAKGPLKVAMWKHFDLYCHFVAGLVGEGLSRLFSESKLERPWLGHQLELSNHMGLFLQKT 229
Query: 209 NIIRDYLEDINEIPKCRMFWPREIWSKYVNKLE----------DLKY-------EENSDK 251
NIIRDY ED E R FWP++ W K E ++K E +
Sbjct: 230 NIIRDYAEDCEE---GRYFWPQQCWGDDFAKFESQPDVAKGIIEIKPGHFRPADNELGQR 286
Query: 252 AVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVV 311
++ L+ M+ +A+ H L Y++ L++ ++F FCAIPQ+MAI TL L +NN +VF+ V
Sbjct: 287 SMYVLSSMLLDAMSHATHALDYLALLKEQSVFNFCAIPQVMAIATLELMFNNPDVFKKNV 346
Query: 312 KMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 367
K+R+G+ +I R N DV F +S + +++ DPN T+ + I++ C
Sbjct: 347 KIRKGVAVGLILRAVNPRDVAYTFLHYSRKMHARLSPADPNFTRWSVELARIEQWC 402
>sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=erg-9 PE=3 SV=1
Length = 481
Score = 241 bits (614), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 205/362 (56%), Gaps = 17/362 (4%)
Query: 5 AAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWA--FCYSMLHKVSRSFALVIQQLGTDL 62
A L HP+ L +++ K+ ++ P + C+ L SRSF+ VIQ+L +L
Sbjct: 8 AYFLLHPNQLRSIVQWKVWHEPVHRRDPSKETETEKACFRHLELTSRSFSAVIQELNPEL 67
Query: 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGTKEY-KVLMD 120
+C+FYLVLR LDT+EDD +I K P+L F + W F+ G E + L+
Sbjct: 68 LMPICLFYLVLRGLDTIEDDMTIDLAKKEPLLREFADLMEIDGWTFTENGPNEKDRELLV 127
Query: 121 QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKE------VESIDDYDEYCYYVAG 174
F V ++ K Y D I +IT +MG GMA + V +I++Y+ YC+YVAG
Sbjct: 128 HFDDVIAELKKVKKPYYDIIREITVKMGNGMADYALNAEHNTNGVNTIEEYELYCHYVAG 187
Query: 175 LVGLGLSKLFYASGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPRE 231
LVG GL++LF S + L L+ SMG FLQKTNIIRD ED + R FWP+
Sbjct: 188 LVGEGLTRLFVESNLANPALLERMELTESMGQFLQKTNIIRDIHEDYVD---KRRFWPKT 244
Query: 232 IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQI 291
IWSKYVN +D+ EN +KA+QC ++MV NAL H EDCL YM+ +RD ++F F AIPQ
Sbjct: 245 IWSKYVNTWDDMFKPENREKALQCSSEMVLNALKHTEDCLFYMAGMRDQSVFNFVAIPQA 304
Query: 292 MAIGTLALCYNNIEVFRGVVKMRRGLTAKV-IDRTNNMTDVYLAFYDFSNILKPKINKND 350
MAI TL L + N +F VK+ +G ++ ++ T N+ V F ++ + K + D
Sbjct: 305 MAIATLELVFRNPAIFERNVKITKGDACQLMMESTQNLRVVCEVFRRYARRIHKKNDPRD 364
Query: 351 PN 352
PN
Sbjct: 365 PN 366
>sp|P21683|CRTB_PANAN Phytoene synthase OS=Pantoea ananas GN=crtB PE=3 SV=2
Length = 309
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 48 SRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWH 107
S+SFA + R +V + Y R D V DD ++ + P L + + E
Sbjct: 18 SKSFATASKLFDAKTRRSVLMLYAWCRHCDDVIDDQTLGFQARQPALQTPEQRLMQLEMK 77
Query: 108 FS---CGTKEYKVLMDQFHHVSTAFLELGKGYQ-DAIEDITKRMGAGMAKFICKEVESID 163
G++ ++ F V+ A ++ Y D +E M A++ +D
Sbjct: 78 TRQAYAGSQMHEPAFAAFQEVAMAH-DIAPAYAFDHLEGFA--MDVREAQY-----SQLD 129
Query: 164 DYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDIN 219
D YCY+VAG+VGL ++++ G D A + +GL Q TNI RD ++D +
Sbjct: 130 DTLRYCYHVAGVVGLMMAQIM---GVRDNATLDRACDLGLAFQLTNIARDIVDDAH 182
>sp|P37294|CRTB_SYNY3 Phytoene synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=crtB PE=3 SV=1
Length = 337
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 160 ESIDDYDEYCYYVAGLVGLGLSKLF---YASGTEDLAPDSL------SNSMGLFLQKTNI 210
++ ++ D YCY VAG VGL S + +G PD++ + ++G+ Q TNI
Sbjct: 159 QTFEELDLYCYRVAGTVGLMSSAVLGVDTGNGQAPWQPDAVYIPQEEAIALGVANQLTNI 218
Query: 211 IRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270
+RD ED+ + R++ P E ++ +DL N D+ + + A + ED
Sbjct: 219 LRDVGEDVE---RGRIYLPLEDLERFNYSEQDLLNGVNDDRWRSLMKFEIDRARHYFEDA 275
Query: 271 LKYMSALRDHA 281
+ + AL A
Sbjct: 276 ERGIRALNRDA 286
>sp|Q9UUQ6|LCPS_MUCCL Bifunctional lycopene cyclase/phytoene synthase OS=Mucor
circinelloides f. lusitanicus GN=CARRP PE=2 SV=1
Length = 614
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 90/239 (37%), Gaps = 65/239 (27%)
Query: 34 EPHWAFC-----------------YSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRAL 76
E WAFC + +L K S+SF D+R + + Y RA
Sbjct: 269 EMTWAFCLPDQVLHSDTFHDLSVSWDILRKASKSFYTASAVFPGDVRQELGVLYAFCRAT 328
Query: 77 DTVEDDTSIPTDVKVPILIAFHRHVYDR-----------EWHF-------SCGTKEYKVL 118
D + D+ +P + LI H+ V D +W F SC +K
Sbjct: 329 DDLCDNEQVPVQTRKEQLILTHQFVSDLFGQKTSAPTAIDWDFYNDQLPASC-ISAFKSF 387
Query: 119 MDQFHHV--STAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYY---VA 173
+ HV + A EL GY+ D+ +R SI D ++ YY VA
Sbjct: 388 -TRLRHVLEAGAIKELLDGYK---WDLERR--------------SIRDQEDLRYYSACVA 429
Query: 174 GLVGLGLSKLFYASGTEDLAPDSL------SNSMGLFLQKTNIIRDYLEDINEIPKCRM 226
VG +++ A + + + MGL LQ TNI RD + D E+ +C +
Sbjct: 430 SSVGEMCTRIILAHADKPASRQQTQWIIQRAREMGLVLQYTNIARDIVTDSEELGRCYL 488
>sp|Q8NUQ5|CRTM_STAAW Dehydrosqualene synthase OS=Staphylococcus aureus (strain MW2)
GN=crtM PE=3 SV=1
Length = 287
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERIYFSKQRLKQY 192
>sp|Q6G6B2|CRTM_STAAS Dehydrosqualene synthase OS=Staphylococcus aureus (strain MSSA476)
GN=crtM PE=3 SV=1
Length = 287
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERIYFSKQRLKQY 192
>sp|O07854|CRTM_STAAE Dehydrosqualene synthase OS=Staphylococcus aureus (strain Newman)
GN=crtM PE=3 SV=3
Length = 287
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERIYFSKQRLKQY 192
>sp|Q5HCY8|CRTM_STAAC Dehydrosqualene synthase OS=Staphylococcus aureus (strain COL)
GN=crtM PE=3 SV=1
Length = 287
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERIYFSKQRLKQY 192
>sp|Q2FV59|CRTM_STAA8 Dehydrosqualene synthase OS=Staphylococcus aureus (strain NCTC
8325) GN=crtM PE=1 SV=1
Length = 287
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERIYFSKQRLKQY 192
>sp|Q2FDU5|CRTM_STAA3 Dehydrosqualene synthase OS=Staphylococcus aureus (strain USA300)
GN=crtM PE=3 SV=1
Length = 287
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERIYFSKQRLKQY 192
>sp|Q7A3E1|CRTM_STAAN Dehydrosqualene synthase OS=Staphylococcus aureus (strain N315)
GN=crtM PE=3 SV=1
Length = 287
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERVYFSKQRLKQY 192
>sp|Q99R75|CRTM_STAAM Dehydrosqualene synthase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=crtM PE=1 SV=1
Length = 287
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDINEIPKCRMFWPREIWSKY 236
ED + R+++ ++ +Y
Sbjct: 173 VGEDFD---NERVYFSKQRLKQY 192
>sp|Q2YWE7|CRTM_STAAB Dehydrosqualene synthase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=crtM PE=3 SV=1
Length = 287
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEHH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDI-NEIPKCRMFWPREIWSKY 236
ED NE R+++ ++ +Y
Sbjct: 173 VGEDFENE----RIYFSKQRLKQY 192
>sp|A9JQL9|CRTM_STAAU Dehydrosqualene synthase OS=Staphylococcus aureus GN=crtM PE=1 SV=1
Length = 287
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 37 WAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED---DTSIPTDVKVPI 93
+ +C+ ++ K S+SF+ L D R AV Y V R +D D D +K I
Sbjct: 8 FKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDI 67
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
+ ++ Y+ HF + L H + AF + + + I+ + K M
Sbjct: 68 Q-SIEKYPYEYH-HFQSDRRIMMALQHVAQHKNIAF----QSFYNLIDTVYKDQHFTM-- 119
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ + YCY VAG VG L+ + S E ++ +G LQ NI+RD
Sbjct: 120 -----FETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLINILRD 172
Query: 214 YLEDI-NEIPKCRMFWPREIWSKY 236
ED NE R+++ ++ +Y
Sbjct: 173 VGEDFENE----RIYFSKQRLKQY 192
>sp|Q4L976|CRTM_STAHJ Dehydrosqualene synthase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=crtM PE=3 SV=1
Length = 285
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 14/184 (7%)
Query: 34 EPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPI 93
E ++ +C+ ++ S+SF+ L R A+ Y V R + D SI V
Sbjct: 5 EENYQYCHQIMKDYSKSFSYAFDMLPEQQRRAIWAIYAVCRIV-----DDSIDVHQDVEY 59
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
L +R V E + + +M F +T F + D I+ + M
Sbjct: 60 LHKINRDVKAIEHQTTTTFESDDRIMTAFADAATHFQMNFQALYDLIDTVEADQHFEM-- 117
Query: 154 FICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
E+ +YCY VAG VG+ L + A+ D A + +G LQ TNI+RD
Sbjct: 118 -----FETDRGLLDYCYGVAGTVGVLLIPIL-ATPPSDEAYE-YGKQLGEALQLTNILRD 170
Query: 214 YLED 217
ED
Sbjct: 171 VGED 174
>sp|P54975|CRTB_PARSN Phytoene synthase OS=Paracoccus sp. (strain N81106 / MBIC 01143)
GN=crtB PE=3 SV=2
Length = 304
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 156 CKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYL 215
++ ++DD EY Y+VAG+VG+ ++++ G D + +GL Q TNI RD +
Sbjct: 118 ARDYRTLDDVLEYSYHVAGIVGVMMARVM---GVRDDPVLDRACDLGLAFQLTNIARDVI 174
Query: 216 EDINEIPKC 224
+D I +C
Sbjct: 175 DD-ARIGRC 182
>sp|P22872|CRTB_ESCVU Phytoene synthase OS=Escherichia vulneris GN=crtB PE=3 SV=1
Length = 309
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 161 SIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINE 220
+ +D YCY+VAG+VGL ++++ G D + +GL Q TNI RD ++D
Sbjct: 127 TFEDTLRYCYHVAGVVGLMMARVM---GVRDERVLDRACDLGLAFQLTNIARDIIDDA-A 182
Query: 221 IPKC 224
I +C
Sbjct: 183 IDRC 186
>sp|P37270|CRTB_THET2 Phytoene synthase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=crtB PE=3 SV=1
Length = 289
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 35/217 (16%)
Query: 34 EPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPI 93
EP W +L S +F L + R Y R D D +
Sbjct: 8 EPDWKALLRVLRAHSATFYLGSLLFPKEARKGAWAVYAACRLGDEAVDGEGGGPEALEAW 67
Query: 94 LIAFHRHVYDR---EWH--FSCGTKEYKVLMDQFHHVSTAFL-ELGKGYQDAIEDITKRM 147
R R EW + + + + + F H+ FL +LG R+
Sbjct: 68 WAGVERAYRGRPLAEWEKGLAWALERWDIPFEAFLHMREGFLTDLG----------PVRL 117
Query: 148 GAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQK 207
G E E + YCY VAG VG ++ + A G ++ ++ + +G +Q
Sbjct: 118 GT--------EAELL----RYCYQVAGTVGRMMAPI--AGGGKE--AEARAVKLGQAMQL 161
Query: 208 TNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLK 244
TNI+RD ED+ + R++ P ++ + ++EDL+
Sbjct: 162 TNILRDVGEDLE---RDRVYLPLDLLRAHGVEVEDLR 195
>sp|P37271|PSY_ARATH Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1
PE=2 SV=2
Length = 422
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 136 YQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPD 195
++D IE + RM +++ ++ DD YCYYVAG VGL + +
Sbjct: 225 FRDMIEGM--RMDLKKSRY-----QNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTE 277
Query: 196 SLSN---SMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKA 252
S+ N ++G+ Q TNI+RD ED + R++ P++ ++ ED+ + +DK
Sbjct: 278 SVYNAALALGIANQLTNILRDVGEDAR---RGRVYLPQDELAQAGLSDEDIFAGKVTDKW 334
Query: 253 VQCLNDMVTNALMHVEDCLKYMSAL 277
+ + A M ++ K ++ L
Sbjct: 335 RNFMKMQLKRARMFFDEAEKGVTEL 359
>sp|P53797|PSY_NARPS Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus
GN=PSY PE=2 SV=1
Length = 423
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 164 DYDE---YCYYVAGLVGLGLSKLFYASGTEDLA-PDSLSN---SMGLFLQKTNIIRDYLE 216
++DE YCYYVAG VGL +S E LA +S+ N ++G+ Q TNI+RD E
Sbjct: 240 NFDELYLYCYYVAGTVGL-MSVPVMGIAPESLAEAESVYNAALALGIANQLTNILRDVGE 298
Query: 217 DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSA 276
D + R++ P++ ++ ED+ + +DK + + A E K ++
Sbjct: 299 DAR---RGRIYLPQDELAEAGLSDEDVFTGKVTDKWRSFMKRQIKRARTFFEQAEKGVTE 355
Query: 277 L 277
L
Sbjct: 356 L 356
>sp|P55350|Y4AC_RHISN Putative phytoene synthase OS=Rhizobium sp. (strain NGR234)
GN=NGR_a00440 PE=3 SV=1
Length = 279
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 50 SFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS 109
SF L ++ L R A+ Y R +D + D P + ++ L + H+ + +
Sbjct: 19 SFYLGMRTLPPVQREAIFQIYSFCRQVDDIADSDE-PREHRLAALQQWRDHI---DALYQ 74
Query: 110 C----GTKEYKVLMDQFHHVSTAFLELGKGYQ-DAIEDITKRMGAGMAKFICKEVESIDD 164
C K+Y + F FL + G + D ++DI MA
Sbjct: 75 CVPPPRLKDYLASVTTFGLKREDFLAVVDGMEMDVLQDIR---APKMATL---------- 121
Query: 165 YDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKC 224
D YC VA VG ++F S + +A L++ +G LQ TNI+RD ED
Sbjct: 122 -DLYCDRVASAVGRMSVRVFGLSEEDGIA---LAHHLGRALQLTNILRDIDEDAG---LG 174
Query: 225 RMFWPRE 231
R++ PRE
Sbjct: 175 RLYIPRE 181
>sp|P49085|PSY_MAIZE Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1
Length = 410
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 163 DDYDE---YCYYVAGLVGLGLSKLFYASGTEDLAPD----SLSNSMGLFLQKTNIIRDYL 215
+++DE YCYYVAG VGL +S TE A S + ++G+ Q TNI+RD
Sbjct: 229 NNFDELYMYCYYVAGTVGL-MSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVG 287
Query: 216 EDINEIPKCRMFWPRE 231
ED + R++ P++
Sbjct: 288 EDAR---RGRIYLPQD 300
>sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1
Length = 398
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 160 ESIDDYDEYCYYVAGLVGL------GLSKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRD 213
++ D+ YCYYVAG VGL G++ A+ TE + +L ++G+ Q TNI+RD
Sbjct: 221 QTFDELYLYCYYVAGTVGLMSVPVMGIAPESKAT-TESVYSAAL--ALGIANQLTNILRD 277
Query: 214 YLEDINEIPKCRMFWPRE 231
ED + R++ P+E
Sbjct: 278 VGEDAR---RGRIYLPQE 292
>sp|P08196|PSY1_SOLLC Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1
PE=1 SV=2
Length = 412
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 164 DYDE---YCYYVAGLVGLGLSKLFYASGTEDLAPDSLSN---SMGLFLQKTNIIRDYLED 217
++DE YCYYVAG VGL + + +S+ N ++G+ Q TNI+RD ED
Sbjct: 232 NFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGED 291
Query: 218 INEIPKCRMFWPRE 231
+ R++ P++
Sbjct: 292 AR---RGRVYLPQD 302
>sp|P37272|PSY_CAPAN Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2
SV=1
Length = 419
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 164 DYDE---YCYYVAGLVGLGLSKLFYASGTEDLAPDSLSN---SMGLFLQKTNIIRDYLED 217
++DE YCYYVAG VGL + + +S+ N ++G+ Q TNI+RD ED
Sbjct: 244 NFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGED 303
Query: 218 INEIPKCRMFWPRE 231
+ R++ P++
Sbjct: 304 AR---RGRVYLPQD 314
>sp|P37273|PSY2_SOLLC Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum
lycopersicum GN=PSY2 PE=2 SV=1
Length = 310
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 163 DDYDE---YCYYVAGLVGLGLSKLFYASGTEDLAPDSLSN---SMGLFLQKTNIIRDYLE 216
+++DE YCYYVAG VGL + + +S+ N ++G+ Q TNI+RD E
Sbjct: 127 NNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGE 186
Query: 217 DINEIPKCRMFWPRE 231
D + R++ P++
Sbjct: 187 DAR---RGRVYLPQD 198
>sp|Q9P854|LCPS_PHYB8 Bifunctional lycopene cyclase/phytoene synthase OS=Phycomyces
blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC
33097 / NRRL 1555) GN=carRA PE=1 SV=1
Length = 602
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 41 YSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVED--DTSIPTDVK-VPILIAF 97
+ +L + S SF + R + + Y RA D + D D S+P K + ++ F
Sbjct: 288 WRILREASASFYTASSVFSFEARQDLGVLYGFCRATDDLADNNDVSVPDRKKQLELVRGF 347
Query: 98 HRHVYD-REWHFSCGTKEYK-VLMDQFHHVSTAFLELGKGYQ-DAIEDITKRMGAGMAKF 154
R ++D + H +Y + D F +F L + A+E++ + +
Sbjct: 348 VRQMFDSKHGHPDIDWTQYSGSIPDSFIAAFRSFTRLRDVLEIKAVEELLDGYTFDLEQ- 406
Query: 155 ICKEVESIDDYDEYCYYVAGLVGLGLSKLFYAS---GTEDLAPDSLSNS--MGLFLQKTN 209
+EV++ DD Y VA VG +++ AS G + ++ + MGL LQ TN
Sbjct: 407 --REVKNEDDLVYYSACVASSVGEMCTRVLMASEPGGNRTMLKWTVERARDMGLALQLTN 464
Query: 210 IIRDYLEDINEIPKCRMFWPRE 231
I RD + D ++ R + PR+
Sbjct: 465 IARDIVTDSKQLG--RSYVPRD 484
>sp|B2UTR2|DAPF_HELPS Diaminopimelate epimerase OS=Helicobacter pylori (strain Shi470)
GN=dapF PE=1 SV=1
Length = 273
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 84 SIPT----DVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFH-HVSTAFLE-----LG 133
+IPT D VP L+ F V ++EW S T E + L F+ +++ AF+E
Sbjct: 139 NIPTFYLIDTGVPHLVGF---VKNKEWLNSLNTLELRALRHAFNANINIAFIENKETIFL 195
Query: 134 KGYQDAIEDITKRMGAGMA 152
+ Y+ +ED T G GMA
Sbjct: 196 QTYERGVEDFTLACGTGMA 214
>sp|C3Y3G4|LIAS_BRAFL Lipoyl synthase, mitochondrial OS=Branchiostoma floridae
GN=BRAFLDRAFT_125969 PE=3 SV=1
Length = 376
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 117 VLMDQFHHVSTAFLELGKGY---QDAIEDITKRMGAGMAKFICKEVESIDDYDEY 168
+LM F + + L+ G G Q+ E ITK G G+ FI EVES D +++Y
Sbjct: 5 LLMSTFTFIRCSVLKWGSGSSLPQEQKEKITK--GPGLGDFISGEVESTDSWEDY 57
>sp|P65860|CRTB_MYCTU Probable phytoene synthase OS=Mycobacterium tuberculosis GN=crtB
PE=3 SV=1
Length = 302
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 51/213 (23%)
Query: 34 EPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPI 93
E + S+ +R+F I+ L + R A+ Y + R +D V D P + K+
Sbjct: 5 EQAYRITESITRTAARNFYYGIRLLPREKRAALSAVYALGRRIDDVADGELAP-ETKITE 63
Query: 94 LIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAK 153
L A + +D S L A+ D +R +A
Sbjct: 64 LDAIRKS------------------LDNIDDSSDPVLV-------ALADAARRFPVPIAM 98
Query: 154 FICKEVESID------------DYDE---YCYYVAGLVGLGLSKLFYASGTEDLAPDSLS 198
F E ID D+DE YC AG +G +F G A +
Sbjct: 99 F----AELIDGARMEIDWTGCRDFDELIVYCRRGAGTIGKLCLSIF---GPVSTATSRYA 151
Query: 199 NSMGLFLQKTNIIRDYLEDINEIPKCRMFWPRE 231
+G+ LQ+TNI+RD ED R++ PR+
Sbjct: 152 EQLGIALQQTNILRDVREDFL---NGRIYLPRD 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,217,021
Number of Sequences: 539616
Number of extensions: 5601912
Number of successful extensions: 16664
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 16531
Number of HSP's gapped (non-prelim): 68
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)