Query 016722
Match_columns 384
No_of_seqs 251 out of 1463
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vj8_A Squalene synthase; farn 100.0 2.2E-78 7.6E-83 597.7 34.2 332 32-366 8-342 (343)
2 3acx_A Dehydrosqualene synthas 100.0 4.4E-58 1.5E-62 444.4 26.5 269 33-325 10-286 (293)
3 4hd1_A Squalene synthase HPNC; 100.0 9.8E-57 3.3E-61 435.2 24.7 271 32-325 10-282 (294)
4 3rmg_A Octaprenyl-diphosphate 95.2 0.51 1.7E-05 45.6 15.7 144 134-280 132-308 (334)
5 3tc1_A Octaprenyl pyrophosphat 94.3 0.95 3.2E-05 43.3 14.9 94 134-230 121-229 (315)
6 1yhl_A Farnesyl pyrophosphate 94.0 2.1 7.3E-05 41.6 16.9 92 136-230 152-278 (362)
7 3lom_A Geranyltranstransferase 93.9 0.92 3.2E-05 43.4 13.8 130 136-280 144-287 (313)
8 1rtr_A Geranyltranstransferase 93.7 0.84 2.9E-05 43.4 13.0 122 145-280 148-275 (301)
9 2qis_A Farnesyl pyrophosphate 93.6 3.6 0.00012 40.2 17.7 92 136-230 177-292 (374)
10 3lmd_A Geranylgeranyl pyrophos 93.6 0.42 1.5E-05 46.7 10.9 142 135-280 160-334 (360)
11 4dhd_A Polyprenyl synthetase; 93.5 1.2 4.2E-05 43.3 14.1 141 136-280 133-321 (358)
12 1wmw_A Geranylgeranyl diphosph 93.4 3.7 0.00013 39.3 17.2 93 135-230 130-240 (330)
13 2q80_A Geranylgeranyl pyrophos 93.4 3.7 0.00013 38.9 16.9 92 136-231 112-219 (301)
14 1v4e_A Octoprenyl-diphosphate 93.2 1.6 5.5E-05 41.4 14.1 93 135-230 127-232 (299)
15 3ts7_A Geranyltranstransferase 93.2 0.93 3.2E-05 43.6 12.5 122 145-280 158-286 (324)
16 2ftz_A Geranyltranstransferase 93.0 1.4 4.8E-05 41.5 13.3 129 135-279 134-267 (284)
17 3mzv_A Decaprenyl diphosphate 93.0 0.72 2.5E-05 44.7 11.5 143 135-281 139-316 (341)
18 4f62_A Geranyltranstransferase 93.0 0.96 3.3E-05 43.4 12.2 121 146-280 152-279 (317)
19 3m0g_A Farnesyl diphosphate sy 92.8 0.42 1.4E-05 45.4 9.3 122 145-280 147-273 (297)
20 3aqb_B Component B of hexapren 92.8 1.8 6.2E-05 41.5 13.9 93 135-230 130-240 (325)
21 3uca_A Geranyltranstransferase 92.7 2.2 7.7E-05 40.9 14.4 122 145-280 180-308 (324)
22 1uby_A FPS, farnesyl diphospha 92.7 3.6 0.00012 40.1 16.1 92 136-230 170-285 (367)
23 2h8o_A Geranyltranstransferase 92.3 0.99 3.4E-05 43.6 11.4 121 145-279 192-318 (335)
24 3p8l_A Geranyltranstransferase 92.3 1.4 4.9E-05 41.9 12.3 121 145-279 156-282 (302)
25 3dyh_A Farnesyl pyrophosphate 92.2 8 0.00027 38.0 18.0 92 136-230 180-306 (390)
26 3p8r_A Geranyltranstransferase 92.1 0.88 3E-05 43.3 10.6 122 145-280 158-286 (302)
27 1wy0_A Geranylgeranyl pyrophos 92.0 3.7 0.00013 39.5 15.2 91 137-230 139-247 (342)
28 3ipi_A Geranyltranstransferase 92.0 1.6 5.4E-05 41.4 12.2 129 135-280 127-266 (295)
29 3nf2_A Putative polyprenyl syn 92.0 2.3 8E-05 41.2 13.7 91 137-230 145-253 (352)
30 3pde_A Farnesyl-diphosphate sy 91.9 1.9 6.4E-05 41.2 12.6 120 145-278 155-280 (309)
31 2ihi_A Pyrophosphate synthase; 91.8 5.4 0.00018 39.3 16.3 92 136-230 179-314 (395)
32 3lsn_A Geranyltranstransferase 91.8 1 3.4E-05 43.0 10.6 121 146-280 153-280 (304)
33 1rqj_A Geranyltranstransferase 91.5 1.3 4.4E-05 42.0 11.0 121 145-279 152-279 (299)
34 3pko_A Geranylgeranyl pyrophos 90.4 3.2 0.00011 39.9 12.8 93 135-230 143-253 (334)
35 3oyr_A Trans-isoprenyl diphosp 90.3 4 0.00014 39.5 13.4 142 135-280 151-327 (345)
36 3apz_A Geranyl diphosphate syn 89.9 13 0.00046 35.6 16.9 94 135-231 153-264 (348)
37 2e8v_A Geranylgeranyl pyrophos 88.3 5.2 0.00018 38.5 12.6 91 137-230 133-243 (340)
38 3lk5_A Geranylgeranyl pyrophos 88.2 5.6 0.00019 38.9 12.9 89 139-230 179-286 (380)
39 3v1v_A 2-MIB synthase, 2-methy 88.1 19 0.00065 35.7 16.9 200 60-272 173-391 (433)
40 2azj_A Geranylgeranyl pyrophos 87.9 18 0.0006 33.9 16.9 120 135-279 135-261 (289)
41 2her_A Fragment, farnesyl pyro 87.5 13 0.00043 36.3 14.8 91 137-230 170-278 (368)
42 3npk_A Geranyltranstransferase 86.3 6.8 0.00023 36.9 11.8 121 144-280 144-270 (291)
43 3llw_A Geranyltranstransferase 85.3 8.1 0.00028 36.7 11.9 117 145-277 159-282 (311)
44 3kb9_A EPI-isozizaene synthase 84.7 30 0.001 33.4 21.3 197 59-274 102-315 (382)
45 1n1b_A (+)-bornyl diphosphate 78.6 62 0.0021 33.1 24.3 231 9-270 240-497 (549)
46 3mav_A Farnesyl pyrophosphate 77.8 54 0.0018 31.9 15.4 33 195-230 272-314 (395)
47 2q58_A Fragment, farnesyl pyro 75.5 29 0.00099 33.6 12.3 89 139-230 172-278 (368)
48 2j1p_A Geranylgeranyl pyrophos 73.0 47 0.0016 31.0 12.7 105 146-278 161-274 (293)
49 1di1_A Aristolochene synthase; 66.2 78 0.0027 28.8 20.8 188 60-272 59-265 (300)
50 3kra_B Geranyl diphosphate syn 65.6 25 0.00086 32.6 9.0 73 137-209 136-219 (274)
51 1ps1_A Pentalenene synthase; a 62.0 1E+02 0.0035 28.6 21.7 193 61-272 64-271 (337)
52 1yyq_A Trichodiene synthase; t 54.2 1.6E+02 0.0054 28.4 18.1 168 57-242 80-257 (374)
53 4fp4_A Polyprenyl synthetase; 46.5 66 0.0023 30.0 8.3 75 135-215 133-210 (285)
54 3qkc_B Geranyl diphosphate syn 45.8 80 0.0027 29.1 8.8 72 137-209 138-220 (273)
55 3bny_A Aristolochene synthase; 37.6 2.4E+02 0.0082 25.7 20.8 186 61-270 74-277 (320)
56 2ong_A 4S-limonene synthase; m 31.9 4.1E+02 0.014 26.8 26.8 232 9-269 234-489 (543)
57 2j5c_A 1,8-cineole synthase; t 29.2 4.7E+02 0.016 26.6 21.6 187 63-270 309-517 (569)
58 3n0f_A Isoprene synthase; terp 28.5 4.8E+02 0.016 26.5 22.6 187 62-269 290-498 (555)
59 1yfb_A Transition state regula 24.9 29 0.00099 24.5 1.5 21 223-243 21-41 (59)
60 2l66_A SSO7C4, transcriptional 21.5 43 0.0015 22.7 1.8 21 223-243 11-31 (53)
No 1
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=2.2e-78 Score=597.72 Aligned_cols=332 Identities=49% Similarity=0.858 Sum_probs=315.7
Q ss_pred CCchhHHHHHHHHhhcCCcHHHHHHhcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC
Q 016722 32 PPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG 111 (384)
Q Consensus 32 ~~~~~~~~C~~~l~~~srSF~~a~~~Lp~~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G 111 (384)
.+++++++|+++++++|+|||+++++||+++|++|+++|+|||.+|||+|+++.++++|..+|++|++.+.+.+|.|..|
T Consensus 8 ~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~ 87 (343)
T 3vj8_A 8 SLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMES 87 (343)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCC
T ss_pred cchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcCC
Confidence 46899999999999999999999999999999999999999999999999998888899999999999999888888745
Q ss_pred CCcchHHHhhHHHHHHHHHhcCHHHHHHHHHHHHhhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC
Q 016722 112 TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED 191 (384)
Q Consensus 112 ~~~~~~l~~~~~~v~~~~~~l~~~~~~lI~~i~~~m~~gm~~dl~~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~ 191 (384)
++.+++++..++.++.+|..++..++++|.+++++|++||++|+.++|+|++||+.|||+|||+||+|+++||+.++.++
T Consensus 88 ~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~ 167 (343)
T 3vj8_A 88 KEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFED 167 (343)
T ss_dssp CSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSC
T ss_pred ChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCcc
Confidence 66778899999999999999999999999999999999999999989999999999999999999999999999754322
Q ss_pred C---ChhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHH
Q 016722 192 L---APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVE 268 (384)
Q Consensus 192 ~---~~~~~A~~lG~alQltNIlRDv~eD~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~ 268 (384)
+ ...+.|.+||.|+|+||||||++||+. +||+|||.|+|.+||++.+||..+++++++++|+++++.+|+.|+.
T Consensus 168 ~~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 168 PLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhHHHHh---CCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 2 245899999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhccchhhhhHHHHHHHHHHHhcCCCCccCccccChHHHHHHHHHhcChhHHHHHHHHHHHHhcccCCC
Q 016722 269 DCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINK 348 (384)
Q Consensus 269 ~a~~y~~~L~~~~~~~f~aiP~~~AiatL~~~~~~~~vf~~~vki~k~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 348 (384)
+|+.|++.|+++++++||++|++||++||..+++|++||+++|||+|++++|++|+++|+++|+.+|++|+++|++|++|
T Consensus 245 ~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~~~~v~~~rvkisr~~~~~l~~ra~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
T 3vj8_A 245 DVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPD 324 (343)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHhCCccccCCCcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHhhCCC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 016722 349 NDPNATKTLSRVEAIQKA 366 (384)
Q Consensus 349 ~dp~~~~~~~~~~~i~~~ 366 (384)
+||||.+|.++|++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (343)
T 3vj8_A 325 SDPSSSKTRQIISTIRTQ 342 (343)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999999874
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=4.4e-58 Score=444.43 Aligned_cols=269 Identities=19% Similarity=0.220 Sum_probs=244.9
Q ss_pred CchhHHHHHHHHhhcCCcHHHHHHhcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCC
Q 016722 33 PEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT 112 (384)
Q Consensus 33 ~~~~~~~C~~~l~~~srSF~~a~~~Lp~~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~ 112 (384)
.+.++++|.++++++|+|||+++++||+++|++++++|+|||++|||+|+++.|.. |+||++.+.+ .+. |.
T Consensus 10 ~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~-----L~~w~~~l~~---~~~-g~ 80 (293)
T 3acx_A 10 MDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF-----LNQIKEDIQS---IEK-YP 80 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH-----HHHHHHHHHH---HHH-CT
T ss_pred hHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH-----HHHHHHHHHH---HhC-CC
Confidence 45679999999999999999999999999999999999999999999999876542 9999999986 355 65
Q ss_pred C------cchHHHhhHHHHHHHHHhcCHHHHHHHHHHHHhhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhc
Q 016722 113 K------EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFY 185 (384)
Q Consensus 113 ~------~~~~l~~~~~~v~~~~~~l~~~~~~lI~~i~~~m~~gm~~dl~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~ 185 (384)
+ +++|++.+|..++++|..+.+.+.++|+ ||++|+. ++|+|++||+.|||+|||+||+|++++||
T Consensus 81 ~~~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g 152 (293)
T 3acx_A 81 YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLID--------TVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILS 152 (293)
T ss_dssp TSCCCCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH--------HHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CcccCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 4 6789999999999999888888888887 9999997 68999999999999999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 016722 186 ASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (384)
Q Consensus 186 ~~~~~~~~~~~~A~~lG~alQltNIlRDv~eD~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~ 265 (384)
.++ .....+.|.+||.|+|+||||||++||+. +||+|||.|+|.+||++.+||.++++++++++++++++.+|+.
T Consensus 153 ~~~--~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~ 227 (293)
T 3acx_A 153 DHE--THQTYDVARRLGESLQLINILRDVGEDFE---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEK 227 (293)
T ss_dssp SSC--CHHHHHHHHHHHHHHHHHHHHHCHHHHHH---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 632 13356899999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhccchhhhhHHHHHHHHHHHh-cCCCCccCccccChHHHHHHHHHh
Q 016722 266 HVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCY-NNIEVFRGVVKMRRGLTAKVIDRT 325 (384)
Q Consensus 266 ~~~~a~~y~~~L~~~~~~~f~aiP~~~AiatL~~~~-~~~~vf~~~vki~k~~~~~l~~~~ 325 (384)
|+.+|+.++..+|+.+ ..+|.++..++.++|..+. +|++ |++++++++++++|+++++
T Consensus 228 ~~~~a~~~~~~lp~~~-r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a 286 (293)
T 3acx_A 228 DFRDVMDQIKVFSIEA-QPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEI 286 (293)
T ss_dssp HHHHHHHTGGGSCTTH-HHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhHHhCCHHH-HHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHH
Confidence 9999999999999876 2356667899999999885 7899 9999999999999999876
No 3
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=9.8e-57 Score=435.19 Aligned_cols=271 Identities=17% Similarity=0.217 Sum_probs=225.7
Q ss_pred CCchhHHHHHHHHhhcCCcHHHHHHhcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC
Q 016722 32 PPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG 111 (384)
Q Consensus 32 ~~~~~~~~C~~~l~~~srSF~~a~~~Lp~~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G 111 (384)
.+++++++|.++++++|+|||+++++||+++|++++++|+|||.+|||+|+.. +.+..+|++|++.+.. .+. |
T Consensus 10 ~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~---~~~~~~L~~~~~~l~~---~~~-g 82 (294)
T 4hd1_A 10 ELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFA---GDRMAALDAYEEELRR---AFA-G 82 (294)
T ss_dssp GGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCC---SCHHHHHHHHHHHHHH---HHH-T
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHH---Hhc-C
Confidence 35789999999999999999999999999999999999999999999999854 3477899999999986 355 7
Q ss_pred CCcchHHHhhHHHHHHHHHhcCHHHHHHHHHHHHhhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCC
Q 016722 112 TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTE 190 (384)
Q Consensus 112 ~~~~~~l~~~~~~v~~~~~~l~~~~~~lI~~i~~~m~~gm~~dl~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~ 190 (384)
++. +|++.+|..++.+|..+.+.+.++|+ ||++|+. ++++|++||+.|||+|||+||+|+++|||..
T Consensus 83 ~~~-~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~--- 150 (294)
T 4hd1_A 83 EAT-TPAFRALQFTIATCNLPMEPFLRLIE--------ANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL--- 150 (294)
T ss_dssp CCC-SHHHHHHHHHHHHHTCCSHHHHHHHH--------HHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---
T ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---
Confidence 654 68999999999999988888999887 9999997 6899999999999999999999999999853
Q ss_pred CCChhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016722 191 DLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (384)
Q Consensus 191 ~~~~~~~A~~lG~alQltNIlRDv~eD~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a 270 (384)
+......|.++|.|||+||||||++||+. +||+|||.|+|.+||++++|+..++.+++++.++.+++.+|+.||.++
T Consensus 151 ~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a 227 (294)
T 4hd1_A 151 DDERARLSDATCTALQVANHMQDIDRDLA---LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEG 227 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhchhhhc---cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33456899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhccchhhhhHHHHHHHHHHHh-cCCCCccCccccChHHHHHHHHHh
Q 016722 271 LKYMSALRDHAIFRFCAIPQIMAIGTLALCY-NNIEVFRGVVKMRRGLTAKVIDRT 325 (384)
Q Consensus 271 ~~y~~~L~~~~~~~f~aiP~~~AiatL~~~~-~~~~vf~~~vki~k~~~~~l~~~~ 325 (384)
..++..+|.... ..+.++..+...++..+. +|++||++|+++++.+++++++++
T Consensus 228 ~~~~~~lp~~~r-~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~a 282 (294)
T 4hd1_A 228 RRLESLVPPRLA-RQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSV 282 (294)
T ss_dssp GGGGGSSCHHHH-HHHHHHHHHHHHHHHHHHTTTTCCC------------------
T ss_pred HHHHHhCCHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHH
Confidence 999999997752 223445555666777664 789999999999999999999876
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=95.24 E-value=0.51 Score=45.59 Aligned_cols=144 Identities=10% Similarity=0.047 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHH
Q 016722 134 KGYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQ 206 (384)
Q Consensus 134 ~~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQ 206 (384)
....+++.+.+..|..|-..|+.. .-.|.++|..-..+=.|......+++-.. +|... .....++.++|+|+|
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQ 211 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQ 211 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556667777888899999863 34688998877776666666666555322 22221 123478999999999
Q ss_pred HHHHHhchH----------hhhhcCCCCCccccHHHHHhccCCh-----hhhh-cccCCHHHHHH----------HHHHH
Q 016722 207 KTNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKL-----EDLK-YEENSDKAVQC----------LNDMV 260 (384)
Q Consensus 207 ltNIlRDv~----------eD~~~~~~gR~ylP~e~l~~~g~~~-----~dl~-~~~~~~~~~~~----------l~~lv 260 (384)
+.+=+-|+. .|+. .|.+=||.=..-+..... .++. .+..++.-.+. +..-.
T Consensus 212 i~DD~ld~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~ 288 (334)
T 3rmg_A 212 IKDDIFDYFDSKKIGKPTGNDML---EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYAC 288 (334)
T ss_dssp HHHHHHTTSCC------CCHHHH---TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHhccCCChhhcCCCchhhhh---cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHH
Confidence 999888873 7888 689989873322222111 1111 12222222221 22333
Q ss_pred HHHHHHHHHHHHHHHhcchh
Q 016722 261 TNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 261 ~~A~~~~~~a~~y~~~L~~~ 280 (384)
..+..+..+|...+..+|+.
T Consensus 289 ~~~~~~~~~A~~~L~~lp~~ 308 (334)
T 3rmg_A 289 RTIEQYKKKAFDLLAALPDS 308 (334)
T ss_dssp HHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 44666777777777777754
No 5
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=94.34 E-value=0.95 Score=43.34 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 016722 134 KGYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 209 (384)
Q Consensus 134 ~~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~~~~~~~A~~lG~alQltN 209 (384)
....+++.+.+..|..|-..|+.. .-.|.++|..-+.+=.|....+.+++-.. +|........++.++|+|+|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~D 200 (315)
T 3tc1_A 121 ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIID 200 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344456666677888899888862 25788888765655555555555554332 22221223478999999999999
Q ss_pred HHhch-----------HhhhhcCCCCCccccH
Q 016722 210 IIRDY-----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 210 IlRDv-----------~eD~~~~~~gR~ylP~ 230 (384)
=+-|+ +.|+. .|.+-||.
T Consensus 201 D~ld~~~d~~~~GK~~g~Dl~---egK~T~p~ 229 (315)
T 3tc1_A 201 DLLDITQDAKTLGKPNFSDFK---EGKTTLPY 229 (315)
T ss_dssp HHHTTSCCTTCCCCCCCCTGG---GTCCCHHH
T ss_pred HHhcccCCHHHhCCChhhHHH---cCChhHHH
Confidence 88887 56887 58999997
No 6
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=94.01 E-value=2.1 Score=41.56 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhh-------------------cCCHHHHHHHHHhhhhHH-HHHHHHH---hcc-cCCCC
Q 016722 136 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKL---FYA-SGTED 191 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~~~-------------------~~t~~dl~~Yc~~VAG~V-G~~l~~l---~~~-~~~~~ 191 (384)
..+++.+.+..|..|-..|+... -.|+++|..=+++=.|.. ....+.+ ++. ...+.
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 231 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHH
Confidence 44566667778888999998632 258888877666655555 3443333 321 11111
Q ss_pred -CChhHHHHHHHHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016722 192 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (384)
Q Consensus 192 -~~~~~~A~~lG~alQltNIlRDv~----------eD~~~~~~gR~ylP~ 230 (384)
.....++.++|+|+|+.+=+-|+- .|+. .|.+=||.
T Consensus 232 ~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~---egK~T~p~ 278 (362)
T 1yhl_A 232 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE---DAKCSWLA 278 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHh---cCCchHHH
Confidence 123478999999999998888874 6787 69999997
No 7
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=93.93 E-value=0.92 Score=43.40 Aligned_cols=130 Identities=10% Similarity=0.084 Sum_probs=75.5
Q ss_pred HHHHHHHHH-----HhhhhHHHhhhhh--h-cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC--CCC---CChhHHHHHH
Q 016722 136 YQDAIEDIT-----KRMGAGMAKFICK--E-VESIDDYDEYCYYVAGLVGLGLSKLFYA-SG--TED---LAPDSLSNSM 201 (384)
Q Consensus 136 ~~~lI~~i~-----~~m~~gm~~dl~~--~-~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~--~~~---~~~~~~A~~l 201 (384)
..+++..+. ..|..|...|+.. . -.|.++|..-..+=.|......+++ .. +| ... .....++.++
T Consensus 144 ~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~l 222 (313)
T 3lom_A 144 VVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHI 222 (313)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHH
Confidence 334555443 3677788888863 2 6789999887765555555666666 33 23 111 1234789999
Q ss_pred HHHHHHHHHHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 202 GLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 202 G~alQltNIlRDv~eD~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
|+|+|+.+=+-|+--|..+ ++|- .-+|+.+++.+=...-.+..-...+..+..+|...+..+++.
T Consensus 223 GlaFQI~DDilD~~gd~~~------------~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQI------------LGKG--RSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred HHHHHHHHHHHhccCCHHh------------hCCC--CcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999988887544331 2221 013455555554444445566677788888888888888754
No 8
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=93.70 E-value=0.84 Score=43.41 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=75.9
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016722 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (384)
Q Consensus 145 ~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~eD~ 218 (384)
..|..|-..|+. ....|.++|..-..+=.|......+++-.. +|... .....++.++|+|+|+.+=+-|+--|.
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567789888885 236789999887777666666665554322 22221 123378999999999999888886555
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 219 ~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
.+ .|.- . -+|+.+++.+-.....+..-...+..+..+|...+..+|+.
T Consensus 228 ~~--~GK~---------~---g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 228 AK--LGKK---------V---GSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp CC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HH--hCCC---------c---chHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 42 2221 0 14555566555555556666778888888999888888743
No 9
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=93.59 E-value=3.6 Score=40.20 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhh----c----CCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCC---CChhHHHHHH
Q 016722 136 YQDAIEDITKRMGAGMAKFICKE----V----ESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~~~----~----~t~~dl~~Yc~~VAG~V-G~~l~~l~~~-~~-~~~---~~~~~~A~~l 201 (384)
..+++.+.+..|..|-..|+... . .|+++|..-..+=.|.. ..+.+.+-.. +| ... .....++..+
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~l 256 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 256 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 45566677778888999998632 1 58899888777666655 4444333211 22 111 1234789999
Q ss_pred HHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016722 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (384)
Q Consensus 202 G~alQltNIlRDv~----------eD~~~~~~gR~ylP~ 230 (384)
|+|+|+.+=+-|+- .|+. .|.+=||.
T Consensus 257 G~aFQI~DDiLD~~gd~~~~GK~g~Dl~---~gK~T~p~ 292 (374)
T 2qis_A 257 GEFFQIQDDYLDLFGDPSVTGKIGTDIQ---DNKCSWLV 292 (374)
T ss_dssp HHHHHHHHHHHHHHSCHHHHCSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHccCChhhcCCchhHHH---cCCccHHH
Confidence 99999998888874 5777 68999997
No 10
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=93.56 E-value=0.42 Score=46.69 Aligned_cols=142 Identities=12% Similarity=0.085 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQlt 208 (384)
...+++.+.+..|..|...|+.. ...|+++|..-..+=.|......+++-.. +|... .....++.++|+|+|+.
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~ 239 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIV 239 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677888899889862 23778888766665555555555554322 22211 12347899999999999
Q ss_pred HHHhch-----------HhhhhcCCCCCccccHHHHHhccCCh--h---hhhc-ccCCHH-HHHH---------HHHHHH
Q 016722 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKL--E---DLKY-EENSDK-AVQC---------LNDMVT 261 (384)
Q Consensus 209 NIlRDv-----------~eD~~~~~~gR~ylP~e~l~~~g~~~--~---dl~~-~~~~~~-~~~~---------l~~lv~ 261 (384)
|=+-|+ +.|+. .|.+-||.=..-+.. ++ + +++. +..++. ..++ +..-..
T Consensus 240 DDilD~~~d~~~~GK~~g~Dl~---egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~ 315 (360)
T 3lmd_A 240 DDIIDIFSETHESGKTPGTDLR---EGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALD 315 (360)
T ss_dssp HHHHHHHC--------CCHHHH---HTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHccCChhhhCCCchhHHh---cCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHH
Confidence 887777 46777 588889873322221 11 1 1121 112222 1111 233444
Q ss_pred HHHHHHHHHHHHHHhcchh
Q 016722 262 NALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 262 ~A~~~~~~a~~y~~~L~~~ 280 (384)
.+..+..+|...+..+|+.
T Consensus 316 ~a~~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 316 EVYRYMDIANAELDRLPDS 334 (360)
T ss_dssp HHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 5667777888888888754
No 11
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=93.47 E-value=1.2 Score=43.30 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhh---------------cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhH
Q 016722 136 YQDAIEDITKRMGAGMAKFICKE---------------VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDS 196 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~~~---------------~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~ 196 (384)
..+++.+.+..|..|-..|+... -.|.++|..-+.+=.|....+.+++-.. +|... .....
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~ 212 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWN 212 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34455566677888988888632 4588888776666666555555554322 22221 12247
Q ss_pred HHHHHHHHHHHHHHHhch-----------HhhhhcCCCCCc-cccHHHHHhccCChhh------hh-cccCCHHHHH---
Q 016722 197 LSNSMGLFLQKTNIIRDY-----------LEDINEIPKCRM-FWPREIWSKYVNKLED------LK-YEENSDKAVQ--- 254 (384)
Q Consensus 197 ~A~~lG~alQltNIlRDv-----------~eD~~~~~~gR~-ylP~e~l~~~g~~~~d------l~-~~~~~~~~~~--- 254 (384)
++.++|+|+|+.|=+-|+ +.|+. .|.+ =||.= ..-...++++ +. ++..++.-.+
T Consensus 213 ~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~---egK~~T~p~i-~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~ 288 (358)
T 4dhd_A 213 FGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK---EHKRGNAVVA-VALSHLGEGERRRLLEILAREVVEEADVREAV 288 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------CTTHHHH---TTBSCSHHHH-HHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHh---cCChhhHHHH-HHHHhCChhhHHHHHHHHcCCCCCHHHHHHHH
Confidence 899999999999877776 57888 6888 88863 2222222221 11 1222222111
Q ss_pred -H------HHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 255 -C------LNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 255 -~------l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
. +..-...+..+..+|...+..+|+.
T Consensus 289 ~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 289 ALLDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1223445667777777777777744
No 12
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=93.41 E-value=3.7 Score=39.28 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh-----hcCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCC-CChhHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK-----EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED-LAPDSLSNSMGLFLQ 206 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~-----~~~t~~dl~~Yc~~VAG~V-G~~l~~l~~~-~~~~~-~~~~~~A~~lG~alQ 206 (384)
...+++.+.+..|..|-..|+.. .-.|+++|..-+++=.|.. ..+.+++-.. +|... .....++.++|+|+|
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQ 209 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQ 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44456666777888899888864 3568888887776666666 5555554322 22221 114588999999999
Q ss_pred HHHHHhch----------HhhhhcCCCCCccccH
Q 016722 207 KTNIIRDY----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 207 ltNIlRDv----------~eD~~~~~~gR~ylP~ 230 (384)
+.|=+-|+ +.|+. .|.+=||.
T Consensus 210 i~DD~ld~~~d~~~GK~~g~Dl~---egK~T~p~ 240 (330)
T 1wmw_A 210 IVDDVLNLEGGEAYGKERAGDLY---EGKRTLIL 240 (330)
T ss_dssp HHHHHHHHSCSCCCSSSTTHHHH---HTCCCHHH
T ss_pred HHHccCcccCCcccCCCcCchhh---CCCCCHHH
Confidence 99888886 57888 58998987
No 13
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=93.38 E-value=3.7 Score=38.88 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhhHHHhhhhh--h--cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHH
Q 016722 136 YQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNI 210 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~~--~--~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~~~~~~~A~~lG~alQltNI 210 (384)
..+++.+.+.+|..|-..|+.. . ..|+++|..-+++=.|....+.+++-.. ++. +.....++.++|+|+|+.+=
T Consensus 112 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~-~~~l~~~g~~lG~aFQi~DD 190 (301)
T 2q80_A 112 AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY-KEDLKPLLNTLGLFFQIRDD 190 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHHHH
Confidence 3344555666788899889852 2 5689999887776666555555555433 222 23355899999999999887
Q ss_pred Hhch-----------HhhhhcCCCCCccccHH
Q 016722 211 IRDY-----------LEDINEIPKCRMFWPRE 231 (384)
Q Consensus 211 lRDv-----------~eD~~~~~~gR~ylP~e 231 (384)
+-|+ +.|+. .|.+-||.=
T Consensus 191 ~ld~~~~~~~~GK~~g~Dl~---egK~T~p~i 219 (301)
T 2q80_A 191 YANLHSKEYSENKSFCEDLT---EGKFSFPTI 219 (301)
T ss_dssp HHHHHCC------CTTHHHH---HTCCCHHHH
T ss_pred HhhhcCChhhhCCCccchhh---cCCcHHHHH
Confidence 7776 46787 588888873
No 14
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=93.21 E-value=1.6 Score=41.38 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNII 211 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~~~~~~~A~~lG~alQltNIl 211 (384)
...+++.+.+..|..|-..|+.. ...|+++|..-+++=.|......+++-.. +|.+......++.++|+|+|+.+=+
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~ 206 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDI 206 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777888899999862 23789998877766666655555554322 2222222348999999999999888
Q ss_pred hch----------HhhhhcCCCCCccccH
Q 016722 212 RDY----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 212 RDv----------~eD~~~~~~gR~ylP~ 230 (384)
-|+ +.|+. .|.+-||.
T Consensus 207 lD~~~d~~~GK~~g~Dl~---egK~T~p~ 232 (299)
T 1v4e_A 207 MDFAGMEKIGKDGFLDLK---NGVASFPL 232 (299)
T ss_dssp HHHTTCCSCCTTSSCCCT---TTTCCHHH
T ss_pred HHccCccccCCCcchHhh---CCCchHHH
Confidence 876 45566 57788886
No 15
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=93.19 E-value=0.93 Score=43.62 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=73.9
Q ss_pred HhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016722 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (384)
Q Consensus 145 ~~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~-~~~---~~~~~~A~~lG~alQltNIlRDv~eD 217 (384)
..|..|-..|+.. .-.|.++|..-..+=.|......+++-.. +| ... .....++.++|+|+|+.+=+-|+--|
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3577888888862 36789999887766666665666555432 22 111 12337899999999999988887544
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 218 ~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
.. .++|-. -+|+.+++.+=...-.+..-...|..+..+|...+..+|+.
T Consensus 238 ~~------------~~GK~~--g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 238 TQ------------TLGKTR--GKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp -----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HH------------HhCCCc--cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 33 122210 14555555555555556666677888888888888888764
No 16
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=93.05 E-value=1.4 Score=41.55 Aligned_cols=129 Identities=11% Similarity=-0.007 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--h--cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 209 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~--~--~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~~~~~~~A~~lG~alQltN 209 (384)
...+++.+.+..|..|-..|+.. . -.|.++|..-..+=.|......+++-.. +|........++.++|+|+|+.|
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~D 213 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYD 213 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Confidence 44455666667888899999852 2 5789999888877767666666555322 22222234589999999999999
Q ss_pred HHhchHhhhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016722 210 IIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (384)
Q Consensus 210 IlRDv~eD~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~ 279 (384)
=+-|+.-|..+ .|.- .| +|+. +.+-.....+..-...+..+..+|...+..++.
T Consensus 214 D~lD~~~d~~~--~GK~---------~g---~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 214 DLXDILGSFEK--VGKD---------LG---KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HHHHHHHHCCC--C-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhcCCHHh--hCCC---------cc---hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 88888777652 3331 01 2332 223233333445556677777777777777763
No 17
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=93.01 E-value=0.72 Score=44.65 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQl 207 (384)
...+++.+.+..|..|-..|+.. .-.|.++|..-..+=.|....+.+++-.. +|... .....++.++|+|+|+
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 218 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQI 218 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667888899888862 35788998776666666555555554332 22221 1234789999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccHHHHHhccCChh------hhhc-cc-CCHHHHHH---------HHHH
Q 016722 208 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE------DLKY-EE-NSDKAVQC---------LNDM 259 (384)
Q Consensus 208 tNIlRDv-----------~eD~~~~~~gR~ylP~e~l~~~g~~~~------dl~~-~~-~~~~~~~~---------l~~l 259 (384)
.|=+-|+ +.|+. .|.+=||.= ..-...+.+ ++.. +. ..+....+ +..-
T Consensus 219 ~DD~ld~~~d~~~~GK~~g~Dl~---egK~Tlp~i-~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a 294 (341)
T 3mzv_A 219 VDDLLDYGGKSAEIGKNTGDDFR---ERKLTMPVI-KAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEAT 294 (341)
T ss_dssp HHHHHHC----------CCHHHH---TTCCCHHHH-HHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCChhhcCCCCCcccc---cCchhHHHH-HHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHH
Confidence 9888876 46888 699999973 332222221 1111 11 12222222 2334
Q ss_pred HHHHHHHHHHHHHHHHhcchhh
Q 016722 260 VTNALMHVEDCLKYMSALRDHA 281 (384)
Q Consensus 260 v~~A~~~~~~a~~y~~~L~~~~ 281 (384)
...+..+..+|...+..+|+..
T Consensus 295 ~~~a~~~~~~A~~~L~~lp~~~ 316 (341)
T 3mzv_A 295 RLAAIGWTDTARKALAKLPDHP 316 (341)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCCH
Confidence 4556777788888888887543
No 18
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=92.96 E-value=0.96 Score=43.38 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=71.7
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016722 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (384)
Q Consensus 146 ~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~-~~~---~~~~~~A~~lG~alQltNIlRDv~eD~ 218 (384)
.|..|-..|+. ....|.++|..-..+=.|......+++-.. +| .+. .....++.++|+|+|+.+=+-|+--|.
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 47778888885 245788888877655555555555554332 22 111 123478999999999999888875443
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 219 ~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
. .++|- .-+|+.+++.+=.+.-.+..-...|..+..+|...+..+|+.
T Consensus 232 ~------------~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 E------------TLGKT--QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred H------------hhCCC--cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 3 12221 014555566555555566677778888888888888888753
No 19
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=92.79 E-value=0.42 Score=45.44 Aligned_cols=122 Identities=14% Similarity=0.010 Sum_probs=65.4
Q ss_pred HhhhhHHHhhhhh----hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhchHhhhh
Q 016722 145 KRMGAGMAKFICK----EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (384)
Q Consensus 145 ~~m~~gm~~dl~~----~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~~~~~~~A~~lG~alQltNIlRDv~eD~~ 219 (384)
..|..|...|+.. .-.|.++|..-..+=.|....+.+++-.. +|.+......++.++|+|+|+.|=+-|+--|..
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4577788888853 35788998887666555555555544322 222222345899999999999876666533322
Q ss_pred cCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 220 ~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
.++|- .-+|+.+++.+=...-.+..-...+..++.+|...+..++..
T Consensus 227 ------------~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 227 ------------AAGKR--LGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp ----------------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred ------------HhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 12221 013444444444444444445566777778888877777754
No 20
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=92.78 E-value=1.8 Score=41.45 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQl 207 (384)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|....+.+++-.. +|.+. .....++.++|+|+|+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi 209 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQI 209 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667888899999862 25789998877776666666666655432 22221 1233789999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccH
Q 016722 208 TNIIRDY-----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 208 tNIlRDv-----------~eD~~~~~~gR~ylP~ 230 (384)
.|=+-|+ +.|+. .|.+=||.
T Consensus 210 ~DD~ld~~~~~~~~GK~~g~Dl~---~gk~T~p~ 240 (325)
T 3aqb_B 210 IDDILDYTSDEATLGKPVGSDIR---NGHITYPL 240 (325)
T ss_dssp HHHHHHHHSCHHHHSSCTTHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhcCCccchHhh---CCCccHHH
Confidence 8877776 56887 68998987
No 21
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=92.72 E-value=2.2 Score=40.92 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=69.1
Q ss_pred HhhhhHHHhhhhhh---cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016722 145 KRMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (384)
Q Consensus 145 ~~m~~gm~~dl~~~---~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~eD 217 (384)
..|..|-..|+... -.|.++|..-..+=.|......+++-.. +|... .....++.++|+|+|+.+=+-|+--|
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35778888888632 5688888876644444445555544322 22221 12337899999999999988777433
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 218 ~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
.. .++|- .-+|+.+++.+=.....+..-...+..+..+|...+..+|..
T Consensus 260 ~~------------~~GK~--~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 260 AK------------DLGKN--VHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp -------------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HH------------HhCCC--cchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 32 12221 013555555554444455566677888888888888888754
No 22
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=92.71 E-value=3.6 Score=40.12 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhh--------cCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCC---CChhHHHHHH
Q 016722 136 YQDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~~~--------~~t~~dl~~Yc~~VAG~V-G~~l~~l~~~-~~-~~~---~~~~~~A~~l 201 (384)
..+++.+.+..|..|-..|+... -.|+++|..=+.+=.|.. ....+.+-.. +| ... .....++.++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~l 249 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEM 249 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 44566677778888999998631 358888877665544444 3333322111 12 111 1234789999
Q ss_pred HHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016722 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (384)
Q Consensus 202 G~alQltNIlRDv~----------eD~~~~~~gR~ylP~ 230 (384)
|+|+|+.+=+-|+- .|+. .|.+=||.
T Consensus 250 G~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~ 285 (367)
T 1uby_A 250 GEYFQIQDDYLDCFGDPALTGAVGTDIQ---DNKCSWLV 285 (367)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCCCCCSS---SCCCCHHH
T ss_pred HHHHHHHHHHHHhcCChhhcCCchhhHH---cCCchHHH
Confidence 99999999888875 5777 69999997
No 23
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=92.31 E-value=0.99 Score=43.62 Aligned_cols=121 Identities=13% Similarity=0.040 Sum_probs=69.2
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016722 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (384)
Q Consensus 145 ~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~eD~ 218 (384)
..|..|...|+. ..-.|.++|..-..+=.|......+++-.. +|... .....++.++|+|+|+.+=+-|+--|.
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567788888885 236789999887777666665555544321 22221 123478999999999998888875443
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016722 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (384)
Q Consensus 219 ~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~ 279 (384)
.+ ++|- .-+|+.+++.+-.+...+..-...+..+..+|...+..++.
T Consensus 272 ~~------------~GK~--~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 AT------------MGKA--TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HH------------hCCC--cchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 21 1110 01344444444444444555566777777888877777764
No 24
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=92.27 E-value=1.4 Score=41.87 Aligned_cols=121 Identities=11% Similarity=-0.018 Sum_probs=69.4
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016722 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (384)
Q Consensus 145 ~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~eD~ 218 (384)
..|..|...|+. ..-.|.++|..-..+=.|....+.+++-.. +|... .....++.++|+|+|+.+=+-|+--|.
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 357778888885 235688888876555445455555554322 22221 123478999999999999888875443
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016722 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (384)
Q Consensus 219 ~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~ 279 (384)
. .++|-. -+|+.+++.+=.....+..--..+..+..+|...+..+|+
T Consensus 236 ~------------~~GK~~--g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 236 A------------DLGKKV--GRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp -----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------HhCCCh--hhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 122210 1456556666555556666667778888888888888864
No 25
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=92.18 E-value=8 Score=37.97 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhh-------------------cCCHHHHHHHHHhhhhHH-HHHHHH---HhcccCCCC-
Q 016722 136 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSK---LFYASGTED- 191 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~~~-------------------~~t~~dl~~Yc~~VAG~V-G~~l~~---l~~~~~~~~- 191 (384)
..+++.+.+..|..|...|+... -.|+++|..-+.+=.|.. ....+. +++....+.
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~ 259 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVD 259 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 34556666778888988888531 257888876565555543 333332 232211111
Q ss_pred -CChhHHHHHHHHHHHHHHHHhchH----------hhhhcCCCCCccccH
Q 016722 192 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (384)
Q Consensus 192 -~~~~~~A~~lG~alQltNIlRDv~----------eD~~~~~~gR~ylP~ 230 (384)
.....++.++|+|+|+.+=+-|+- .|+. .|.+=||-
T Consensus 260 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~pv 306 (390)
T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ---DAKCSWLA 306 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhh---cCCccHHH
Confidence 123478999999999999888874 5888 69998886
No 26
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=92.11 E-value=0.88 Score=43.31 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=74.1
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC---CCC-CChhHHHHHHHHHHHHHHHHhchHhh
Q 016722 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG---TED-LAPDSLSNSMGLFLQKTNIIRDYLED 217 (384)
Q Consensus 145 ~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~---~~~-~~~~~~A~~lG~alQltNIlRDv~eD 217 (384)
..|..|...|+. ....|.++|..-..+=.|....+.+++-.. +| .+. .....++.++|+|+|+.|=+-|+--|
T Consensus 158 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~ 237 (302)
T 3p8r_A 158 QGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 367778888886 346788888877655555555555554322 22 111 12347899999999999977777544
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 218 ~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
.. .++|- .-+|+.+++.+=.....+..-...|..+..+|...+..+|..
T Consensus 238 ~~------------~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 238 TE------------TLGKP--QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HH------------HhCCC--cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 43 22221 114666666666666667777788888999999988888764
No 27
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=92.05 E-value=3.7 Score=39.52 Aligned_cols=91 Identities=18% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 016722 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (384)
Q Consensus 137 ~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltN 209 (384)
.+++.+.+..|..|-..|+.. .-.|.++|..-+.+=.|....+.+++-.. +|.+. .....++.++|+|+|+.|
T Consensus 139 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~D 218 (342)
T 1wy0_A 139 LEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWD 218 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667788899899862 24588888887777666666666655322 22221 123478999999999998
Q ss_pred HHhch-----------HhhhhcCCCCCccccH
Q 016722 210 IIRDY-----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 210 IlRDv-----------~eD~~~~~~gR~ylP~ 230 (384)
=+-|+ +.|+. .|.+=||.
T Consensus 219 D~lD~~~d~~~~GK~~g~Dl~---egK~Tlp~ 247 (342)
T 1wy0_A 219 DVLDLIADEKKLGKPVGSDIR---KGKKTLIV 247 (342)
T ss_dssp HHHHHHSCHHHHTSCSCHHHH---HTCCCHHH
T ss_pred HHHhccCChhhhCCCchhHHh---CCCCcHHH
Confidence 77776 37777 58888887
No 28
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=92.04 E-value=1.6 Score=41.42 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQlt 208 (384)
...+++.+....|..|-..|+.. ...|.++|..-.++-.|......+++-.. +|.+. .....++.++|+|+|+.
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~ 206 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIV 206 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666788898888852 34677777766666556555555554322 22221 12347899999999999
Q ss_pred HHHhchHh-----hhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 209 NIIRDYLE-----DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 209 NIlRDv~e-----D~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
|=+-|+-- |.. .|.+-||. ++... ..+ ...+..-...|..+..+|...+..+|+.
T Consensus 207 DDilD~~~~~~gkd~~---~gk~Tlp~-l~al~-----------~~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 207 DDILEFLEVVEGKESK---FTSETLPH-IYMKS-----------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHHHHHHHC----------CCHHH-HHTTT-----------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHhcCCccCCCcc---cCcccHHH-HHHHh-----------cCc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 98888854 444 46667775 22211 011 1124555566777888888888888754
No 29
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=92.01 E-value=2.3 Score=41.23 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 016722 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (384)
Q Consensus 137 ~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltN 209 (384)
.+++.+.+..|..|...|+.. .-.|.++|..=..+=.|......+++-.. +|.+. .....++.++|+|+|+.+
T Consensus 145 ~~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~D 224 (352)
T 3nf2_A 145 TRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777898888852 35689998876666666555565554322 22221 122478999999999998
Q ss_pred HHhch-----------HhhhhcCCCCCccccH
Q 016722 210 IIRDY-----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 210 IlRDv-----------~eD~~~~~~gR~ylP~ 230 (384)
=+-|+ +.|+. .|.+=||-
T Consensus 225 D~ld~~gd~~~~GK~~g~Dl~---egK~Tlpv 253 (352)
T 3nf2_A 225 DLLGIWGDPDATGKQTWSDLR---QRKKSLPV 253 (352)
T ss_dssp HHHHHHCCHHHHSSCTTHHHH---TTCCCHHH
T ss_pred HHHhccCChhhhCCCcCcccc---cCCccHHH
Confidence 77776 57888 69998986
No 30
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=91.86 E-value=1.9 Score=41.20 Aligned_cols=120 Identities=15% Similarity=0.009 Sum_probs=71.6
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016722 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (384)
Q Consensus 145 ~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~eD~ 218 (384)
..|..|...|+. ..-.|.++|..-..+=.|....+.+++-.. +|... .....++.++|+|+|+.+=+-|+--|.
T Consensus 155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 234 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 357778888885 235688998877655555555555544321 22221 123478999999999999887775443
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016722 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (384)
Q Consensus 219 ~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~ 278 (384)
. .++|- .-+|+.+++.+=.+.-.+..--..+..++.+|...+..++
T Consensus 235 ~------------~~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~ 280 (309)
T 3pde_A 235 A------------EMGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLP 280 (309)
T ss_dssp ------------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred H------------HhCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 3 22221 0145666666655555666666777778888887777743
No 31
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=91.84 E-value=5.4 Score=39.31 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhh------------------h-----h----cCCHHHHHHHHHhhhhHH-HH---HHHHHh
Q 016722 136 YQDAIEDITKRMGAGMAKFIC------------------K-----E----VESIDDYDEYCYYVAGLV-GL---GLSKLF 184 (384)
Q Consensus 136 ~~~lI~~i~~~m~~gm~~dl~------------------~-----~----~~t~~dl~~Yc~~VAG~V-G~---~l~~l~ 184 (384)
..+++.+.+..|..|...|+. . . -.|+++|..-+.+=.|.. .. .+..++
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~l 258 (395)
T 2ihi_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 345566667788889888882 1 1 357888876555444443 22 222233
Q ss_pred cccCCCC--C-ChhHHHHHHHHHHHHHHHHhch----------HhhhhcCCCCCccccH
Q 016722 185 YASGTED--L-APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 185 ~~~~~~~--~-~~~~~A~~lG~alQltNIlRDv----------~eD~~~~~~gR~ylP~ 230 (384)
+..+.+. . ....++.++|+|+|+.+=+-|+ +.|+. .|.+=||.
T Consensus 259 ag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~ 314 (395)
T 2ihi_A 259 AGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPL 314 (395)
T ss_dssp TTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT---TTCCCHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh---cCCchHHH
Confidence 3221111 1 1237899999999999988887 56888 68998887
No 32
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=91.78 E-value=1 Score=42.95 Aligned_cols=121 Identities=17% Similarity=0.069 Sum_probs=73.0
Q ss_pred hhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCC-CC---CChhHHHHHHHHHHHHHHHHhchHhhh
Q 016722 146 RMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGT-ED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (384)
Q Consensus 146 ~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~-~~---~~~~~~A~~lG~alQltNIlRDv~eD~ 218 (384)
.|..|...|+.. ...|.++|..-+.+=.|....+.+++-.. +|. +. .....++.++|+|+|+.+=+-|+--|.
T Consensus 153 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~ 232 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232 (304)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 377788888852 35788998877665555555555554322 232 11 123478999999999999888876554
Q ss_pred hcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 219 ~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
.+ .|. - .-+|+.+++.+=...-.+..--..+..+..+|...+..+|+.
T Consensus 233 ~~--~GK----------~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 233 AT--LGK----------R--QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HH--C------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HH--hCC----------C--cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 32 222 1 014555555555555556666777888888888888888753
No 33
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=91.51 E-value=1.3 Score=42.04 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=73.9
Q ss_pred HhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhccc--CCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016722 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYAS--GTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (384)
Q Consensus 145 ~~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~--~~~~---~~~~~~A~~lG~alQltNIlRDv~eD 217 (384)
..|..|...|+.. ...|.++|..-..+=.|......+++-... |... .....++.++|+|+|+.|=+-|+--|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4677898888852 356889988877655555555555543211 1111 12337899999999999877777544
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016722 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (384)
Q Consensus 218 ~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~ 279 (384)
.. .++|- .-+|+..++.+-.....+......+..+..+|...+..++.
T Consensus 232 ~~------------~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TA------------TLGKR--QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HH------------HHSSC--TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH------------HhCCC--hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33 12220 01455555555444444555566777778888887777765
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=90.40 E-value=3.2 Score=39.95 Aligned_cols=93 Identities=17% Similarity=0.046 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQl 207 (384)
...+++.+.+..|..|-..|+.. .-.|.++|..-+.+=.|....+.+++-.. +|... .....++.++|+|+|+
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 222 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQM 222 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667787888888753 35688887766655555555555554332 22221 1233788999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccH
Q 016722 208 TNIIRDY-----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 208 tNIlRDv-----------~eD~~~~~~gR~ylP~ 230 (384)
.+=+-|+ +.|+. .|.+=||.
T Consensus 223 ~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~ 253 (334)
T 3pko_A 223 LDDILDYAGDPKRTQKPVLEDLR---SGVYSLPL 253 (334)
T ss_dssp HHHHHHHCSCTTSCCHHHHHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhcCCCCCCccc---cCchhHHH
Confidence 9877776 56888 69999997
No 35
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=90.28 E-value=4 Score=39.47 Aligned_cols=142 Identities=12% Similarity=0.026 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQl 207 (384)
...+++.+.+..|..|-..|+.. .-.|.++|..-..+-.|......+++-.. +|... .....++.++|+|+|+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 230 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQL 230 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677888899888863 35789999877766666666666555332 22221 1233789999999999
Q ss_pred HHHHhch-----------HhhhhcCCCCCccccHHHHHhccCChhh------hhc-c----cCCHHHHHH------HHHH
Q 016722 208 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLED------LKY-E----ENSDKAVQC------LNDM 259 (384)
Q Consensus 208 tNIlRDv-----------~eD~~~~~~gR~ylP~e~l~~~g~~~~d------l~~-~----~~~~~~~~~------l~~l 259 (384)
.+=+-|+ +.|+. .|.+=||.=..-+.+ ++++ +.. + +.-+.+++. +..-
T Consensus 231 ~DD~lD~~~d~~~~GK~~g~Dl~---egK~TlP~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a 306 (345)
T 3oyr_A 231 ADDALDYGGATETLGKNAGDDFR---EGKATLPLLLAIARS-GPREAEFWERAIGRREQTEADFRRARELIIGSGALDAT 306 (345)
T ss_dssp HHHHTTC----------------------CCHHHHHHHHHS-CSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCChhhcCCCccchhh---cCchHHHHHHHHHhC-CHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHH
Confidence 9988886 36777 588889873222222 1111 111 1 111223332 2334
Q ss_pred HHHHHHHHHHHHHHHHhcchh
Q 016722 260 VTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 260 v~~A~~~~~~a~~y~~~L~~~ 280 (384)
...+..+..+|...+..+|+.
T Consensus 307 ~~~a~~~~~~A~~~L~~lp~~ 327 (345)
T 3oyr_A 307 LDLAADYADKAKAALAMFPAN 327 (345)
T ss_dssp HHHHHHHHHHHHHTTTTSCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 455677777787777777754
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=89.91 E-value=13 Score=35.60 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQl 207 (384)
...+++.+.+..|..|-..|+.. .-.|+++|..=.++=.|......+++-.. +|... .....++.++|+|+|+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 232 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 232 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888898888852 24678888765555444444445444322 22221 1123788999999999
Q ss_pred HHHHhchH-----------hhhhcCCCCCccccHH
Q 016722 208 TNIIRDYL-----------EDINEIPKCRMFWPRE 231 (384)
Q Consensus 208 tNIlRDv~-----------eD~~~~~~gR~ylP~e 231 (384)
.+=+-|+- .|+. .|.+=||.=
T Consensus 233 ~DD~lD~~gd~~~~GK~~g~Dl~---egK~Tlp~l 264 (348)
T 3apz_A 233 IDDILDFTGTSASLGKGSLSDIR---HGVITAPIL 264 (348)
T ss_dssp HHHHHHHHTTTTCTTCSCCHHHH---TTCCCHHHH
T ss_pred HHHHhhccCChhhcCCcchhhHh---CCChhHHHH
Confidence 99888874 5677 588888873
No 37
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=88.34 E-value=5.2 Score=38.47 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhHHHhhhhh--h----cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCC--CCChhHHHHHHHHHHHH
Q 016722 137 QDAIEDITKRMGAGMAKFICK--E----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTE--DLAPDSLSNSMGLFLQK 207 (384)
Q Consensus 137 ~~lI~~i~~~m~~gm~~dl~~--~----~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~--~~~~~~~A~~lG~alQl 207 (384)
.+++.+.+..|..|-..|+.. . ..|+++|..-+++=.|....+.+++-.. +|.. ......++.++|+|+|+
T Consensus 133 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi 212 (340)
T 2e8v_A 133 ITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQI 212 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 344555566777798888852 1 4589999887776666665555555432 2222 12234899999999999
Q ss_pred HHHHhchH-----------hhhhcCCCCCccccH
Q 016722 208 TNIIRDYL-----------EDINEIPKCRMFWPR 230 (384)
Q Consensus 208 tNIlRDv~-----------eD~~~~~~gR~ylP~ 230 (384)
.+=+-|+- .|+. .|.+-||.
T Consensus 213 ~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~ 243 (340)
T 2e8v_A 213 RDDYLNLKDFQMSSEKGFAEDIT---EGKLSFPI 243 (340)
T ss_dssp HHHHHHHHC-----CCCTTHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhhCCCchhhHh---cCCchHHH
Confidence 98888773 6777 58888886
No 38
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=88.22 E-value=5.6 Score=38.95 Aligned_cols=89 Identities=15% Similarity=0.009 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHH
Q 016722 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNI 210 (384)
Q Consensus 139 lI~~i~~~m~~gm~~dl~~---~~~t~~dl~~Yc~~VAG~V-G~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNI 210 (384)
++.+....|..|-..|+.. ...|.++|..-..+=.|.. ....+++-.. +|... .....++.++|+|+|+.+=
T Consensus 179 ~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 179 AWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677788888852 3468888877555544443 3333333211 22221 1234789999999999987
Q ss_pred Hhch-----------HhhhhcCCCCCccccH
Q 016722 211 IRDY-----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 211 lRDv-----------~eD~~~~~~gR~ylP~ 230 (384)
+-|+ +.|+. .|.+=||.
T Consensus 259 iLd~~gd~~~~GK~~g~Dl~---egK~T~p~ 286 (380)
T 3lk5_A 259 LLGVFGDPAITGKPAGDDIR---EGKRTVLL 286 (380)
T ss_dssp HHHHHSCHHHHSSCTTHHHH---TTCCCHHH
T ss_pred HHhccCChhhhCCCchhhHh---cCCchHHH
Confidence 7776 57888 58888886
No 39
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=88.14 E-value=19 Score=35.74 Aligned_cols=200 Identities=12% Similarity=-0.037 Sum_probs=103.3
Q ss_pred hhhhhHHHHHHHHHHhhhhh-ccCCCCChhhhHHHHHHHHHHHcccccccccCCC------cchHHHhhHHHHHHHHHhc
Q 016722 60 TDLRNAVCIFYLVLRALDTV-EDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK------EYKVLMDQFHHVSTAFLEL 132 (384)
Q Consensus 60 ~~~R~av~alYaf~R~lD~I-~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~~------~~~~l~~~~~~v~~~~~~l 132 (384)
.+.-..++-+..+.-.+||. .|+.....+....++..++..+..-.-... |.+ .+.++...|..+..++...
T Consensus 173 ~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~-g~p~~~~~~~~dp~~~al~d~~~~l~~~ 251 (433)
T 3v1v_A 173 VDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAE-YTPTWQASLAADAPRRAYDSAMGYFVRA 251 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTT-THHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccC-CCCccccccCCchHHHHHHHHHHHHHhh
Confidence 45666777888888999999 787432122223344444433321000001 211 1335677888888877543
Q ss_pred C-HHHHHHHHHHHHhhhhHHHhhhh----hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC-----CChhHHHHHHH
Q 016722 133 G-KGYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-----LAPDSLSNSMG 202 (384)
Q Consensus 133 ~-~~~~~lI~~i~~~m~~gm~~dl~----~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~-----~~~~~~A~~lG 202 (384)
- +...+-+.+-++++..++..... ..++|++||..+-..+++.....+...+......+ .....+-+..+
T Consensus 252 a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~ 331 (433)
T 3v1v_A 252 ATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQRVIALAG 331 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHH
Confidence 2 22222222233334445444332 35899999999987763322122222221111111 11124566777
Q ss_pred HHHHHHHHHhchHhhhhcCCCC-Cc-cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016722 203 LFLQKTNIIRDYLEDINEIPKC-RM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (384)
Q Consensus 203 ~alQltNIlRDv~eD~~~~~~g-R~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~ 272 (384)
...-++|=|-.+..+.. +| .+ =.-.=.|.++|++.++ +.+-+.+++.+....+.+...
T Consensus 332 ~i~rL~NDI~Sy~kE~~---~gg~~~N~V~~~mke~g~S~ee---------A~~~v~~~i~~~~~~F~~~~~ 391 (433)
T 3v1v_A 332 NATTIVNDLYSYTKELN---SPGRHLNLPVVIAEREQLCERD---------AYLKAVEVHNELQHSFEAAAA 391 (433)
T ss_dssp HHHHHHHHHHSHHHHTT---SSSCCCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHh---cCCCCCcHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887777 53 33 2333356778877654 344455666666555554443
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=87.94 E-value=18 Score=33.95 Aligned_cols=120 Identities=12% Similarity=0.022 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHHhcccC-CCC--CChhHHHHHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TED--LAPDSLSNSMGLFLQKTNII 211 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~-~~~--~~~~~~A~~lG~alQltNIl 211 (384)
...+++.+.+..|..|-..|+.. .++|....++=.|......+.+-..-+ .+. .....++.++|+|+|+.+=+
T Consensus 135 ~~~~~~~~~~~~~~~GQ~~dl~~----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDi 210 (289)
T 2azj_A 135 DALNTSIELWKDTSVGALRDMYD----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDF 210 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666667788898888763 566666565555555554444422211 111 11247899999999999988
Q ss_pred hchHh----hhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016722 212 RDYLE----DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (384)
Q Consensus 212 RDv~e----D~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~ 279 (384)
-|+.- |+. .|..-||. ++.+.|. + +.+ -..+..+..+|...+..+|.
T Consensus 211 lD~~~~~K~dl~---~gk~Tlp~-l~~~~g~--~------------~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 211 VDYKTKKVEEID---GSAKQLFK-YYREGKL--E------------EYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp HHHTTSCTTTCC---TTGGGGHH-HHTTTCH--H------------HHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred hhhcCCCChhhh---cCcccHHH-HHHcCCH--H------------HHH---HHHHHHHHHHHHHHHHhCCC
Confidence 88853 444 46577776 2311111 1 111 13677788888888888876
No 41
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=87.49 E-value=13 Score=36.31 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhHHHhhhhhh----cCCH-HHHHHHHHhhhhHH-HHHHHH---HhcccCCCC---CChhHHHHHHHHH
Q 016722 137 QDAIEDITKRMGAGMAKFICKE----VESI-DDYDEYCYYVAGLV-GLGLSK---LFYASGTED---LAPDSLSNSMGLF 204 (384)
Q Consensus 137 ~~lI~~i~~~m~~gm~~dl~~~----~~t~-~dl~~Yc~~VAG~V-G~~l~~---l~~~~~~~~---~~~~~~A~~lG~a 204 (384)
.+++.+.+..|..|-..|+... -.+. ++|..=..+=.|.. ..+.+. +++..+.+. .....++.++|+|
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~a 249 (368)
T 2her_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEF 249 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 3455566677888998898632 2344 55544333333333 222222 232221221 2234899999999
Q ss_pred HHHHHHHhch------HhhhhcCCCCCccccH
Q 016722 205 LQKTNIIRDY------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 205 lQltNIlRDv------~eD~~~~~~gR~ylP~ 230 (384)
+|+.+=+-|+ +.|+. .|.+=||-
T Consensus 250 FQI~DD~LD~~~~GK~g~Dl~---egK~T~pv 278 (368)
T 2her_A 250 YQVHNDVSDYLFNDSNADDIC---RFKLTWPL 278 (368)
T ss_dssp HHHHHHHHHHHSCCSSSCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHhcCCCCChHh---CCcccHHH
Confidence 9999988887 48998 69999986
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=86.27 E-value=6.8 Score=36.91 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=69.0
Q ss_pred HHhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHhh
Q 016722 144 TKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (384)
Q Consensus 144 ~~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~eD 217 (384)
+..|..|...|+. ..-.|.++|..-..+=.|......+++-.. +|... .....++..+|+|+|+.|=+-|+--|
T Consensus 144 ~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 223 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223 (291)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4457778888885 245688888877665555555555553221 22221 12347899999999999988888766
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 016722 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (384)
Q Consensus 218 ~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~~~ 280 (384)
..+ .|.-. |. | +++.+=.....+..--..+..++.+|...+..++..
T Consensus 224 ~~~--~GK~~---------~~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 224 QEQ--SGKPT---------NN---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ------------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hHH--HCCcc---------ch---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 542 23321 11 1 344454445555555566777788888777777643
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=85.27 E-value=8.1 Score=36.74 Aligned_cols=117 Identities=20% Similarity=0.047 Sum_probs=68.4
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHhchHhh
Q 016722 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLED 217 (384)
Q Consensus 145 ~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~~----~~~~~A~~lG~alQltNIlRDv~eD 217 (384)
..|..|...|+. ..-.|.++|..-+.+=.|......+++-.. +|.+.. ....++.++|+|+|+.|=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467788888885 345688888876655555544444443221 222221 2337899999999999988888766
Q ss_pred hhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016722 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSAL 277 (384)
Q Consensus 218 ~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L 277 (384)
..+ ++|-+ .+ .+++.+=.....+..--..+..++.+|...+..+
T Consensus 239 ~~~------------~GK~~---g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~ 282 (311)
T 3llw_A 239 EEE------------SGKTT---HL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDAL 282 (311)
T ss_dssp ----------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHH------------HCccc---cc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 542 22322 12 4455555555556666677777888888777774
No 44
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=84.71 E-value=30 Score=33.45 Aligned_cols=197 Identities=9% Similarity=-0.018 Sum_probs=109.9
Q ss_pred ChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC----CCcchHHHhhHHHHHHHHHhc-C
Q 016722 59 GTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG----TKEYKVLMDQFHHVSTAFLEL-G 133 (384)
Q Consensus 59 p~~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G----~~~~~~l~~~~~~v~~~~~~l-~ 133 (384)
+.+....++-+..+.-.+||+-|+.... .....++.+.+.+.. ..+ | .....++...|.++..++... .
T Consensus 102 s~erL~l~a~~~~w~f~~DD~~D~~~~g--~~~~~~~~~~~~l~~---~l~-~~~~~p~~~~p~~~al~dl~~~~~~~~~ 175 (382)
T 3kb9_A 102 PDEVLQAIADYSAWFFVWDDRHDRDIVH--GRAGAWRRLRGLLHT---ALD-SPGDHLHHEDTLVAGFADSVRRLYAFLP 175 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH---HHH-SCGGGTTCSSHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccc--cCHHHHHHHHHHHHH---Hhc-CCCCCCCCCChHHHHHHHHHHHHHccCC
Confidence 3444446778888899999999863210 011233333333322 011 2 123457888888888877643 3
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhh----hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC-------CChhHHHHHHH
Q 016722 134 KGYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-------LAPDSLSNSMG 202 (384)
Q Consensus 134 ~~~~~lI~~i~~~m~~gm~~dl~----~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~-------~~~~~~A~~lG 202 (384)
+....-+.+.++.+..++..... ..++|++||..+...+.|.--.+..-.++. |.+- +....+-+..+
T Consensus 176 ~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~~ 254 (382)
T 3kb9_A 176 ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLSQ 254 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHH
Confidence 33233333334445556655432 358999999999887777533322222221 1111 11123566777
Q ss_pred HHHHHHHHHhchHhhhhcCCCCCc-cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016722 203 LFLQKTNIIRDYLEDINEIPKCRM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYM 274 (384)
Q Consensus 203 ~alQltNIlRDv~eD~~~~~~gR~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~ 274 (384)
...-++|=|-.+..... +|-+ =.-.=.+..+|++.++ +.+.+.+++.++...+.++..-+
T Consensus 255 ~i~rL~NDi~S~~kE~~---~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~~L 315 (382)
T 3kb9_A 255 EFAAWYNDLCSLPKEIA---GDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVERDA 315 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---cCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788887778877777 5653 1112245667776554 56667777777777666655433
No 45
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=78.64 E-value=62 Score=33.07 Aligned_cols=231 Identities=12% Similarity=0.097 Sum_probs=114.1
Q ss_pred cChhhHHHHHHHHHhcccccCCCC-CchhHHHHHHHHhhcCCcHHHHHHhcCh---hhhhHHHHHHHHHHhhhhhccCCC
Q 016722 9 RHPDDLYPLLKLKMASRQAEKQIP-PEPHWAFCYSMLHKVSRSFALVIQQLGT---DLRNAVCIFYLVLRALDTVEDDTS 84 (384)
Q Consensus 9 ~hp~e~~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~l~~~srSF~~a~~~Lp~---~~R~av~alYaf~R~lD~I~D~~~ 84 (384)
.|-.||..+-+|.---.-.. ..+ .++-+..|+ |..+.....| ..|-.++-+-++.-.+||+=|.-.
T Consensus 240 ~hq~El~~l~rWwke~~l~~-kl~faRdR~ve~Y---------fw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~g 309 (549)
T 1n1b_A 240 THQQELKDLSRWWSRLCFPE-KLPFVRDRLVESF---------FWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYG 309 (549)
T ss_dssp HHHHHHHHHHHHHHHHTHHH-HCTTSCCCHHHHH---------HHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCCcc-cccHHHHHHHHHH---------HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCC
Confidence 58889999887754322111 011 122233343 2222323333 335566777778888999988753
Q ss_pred CChhhhHHHHHHHHHHHcccccccc-cCCCcc--hHHHhhHHHHHHHHHhc--CH-H--HHHHHHHHHHhhhhHHHhhh-
Q 016722 85 IPTDVKVPILIAFHRHVYDREWHFS-CGTKEY--KVLMDQFHHVSTAFLEL--GK-G--YQDAIEDITKRMGAGMAKFI- 155 (384)
Q Consensus 85 ~~~~~k~~~L~~~~~~l~~~~~~~~-~G~~~~--~~l~~~~~~v~~~~~~l--~~-~--~~~lI~~i~~~m~~gm~~dl- 155 (384)
. ...|+.|-+.+.. |... .+.-++ .++..++..+..++..- +. . ....+.+..+++..++..-.
T Consensus 310 -t----~eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAk 382 (549)
T 1n1b_A 310 -T----LDELELFTDTFKR--WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAK 382 (549)
T ss_dssp -C----HHHHHHHHHHHHH--TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -C----HHHHHHHHHHHHh--cCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2356777777753 4321 011122 44555666665554311 00 0 01112222333333443322
Q ss_pred --h-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCCh--------hHHHHHHHHHHHHHHHHhchHhhhhcCCCC
Q 016722 156 --C-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAP--------DSLSNSMGLFLQKTNIIRDYLEDINEIPKC 224 (384)
Q Consensus 156 --~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~~~~--------~~~A~~lG~alQltNIlRDv~eD~~~~~~g 224 (384)
. ..++|++|+......+.|.--..+.-.++....-.... ..+....+...=+.|=|..+..+.. +|
T Consensus 383 W~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~---rG 459 (549)
T 1n1b_A 383 WYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELA---RG 459 (549)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC------------
T ss_pred HHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhc---cC
Confidence 2 34899999999988777654444444444321111111 1334444555555555555555555 56
Q ss_pred CccccHH---HHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016722 225 RMFWPRE---IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (384)
Q Consensus 225 R~ylP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a 270 (384)
.+ +.- .|.++|++.++ +.+-++.++.++...+.+.
T Consensus 460 ~v--~n~V~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e 497 (549)
T 1n1b_A 460 DV--PKTIQCYMKETNASEEE---------AVEHVKFLIREAWKDMNTA 497 (549)
T ss_dssp CC--CCHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred Cc--cHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 53 222 45677876544 6667888988888876654
No 46
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=77.80 E-value=54 Score=31.91 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHhch----------HhhhhcCCCCCccccH
Q 016722 195 DSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 195 ~~~A~~lG~alQltNIlRDv----------~eD~~~~~~gR~ylP~ 230 (384)
..++..+|+|+|+.+=+-|+ +.|+. .|.+=||-
T Consensus 272 ~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~p~ 314 (395)
T 3mav_A 272 EDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPL 314 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------CCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh---cCCchHHH
Confidence 37889999999999988886 46888 68888886
No 47
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=75.45 E-value=29 Score=33.57 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhHHHhhhhh-----hcCCHHHHHHH-HHhhhhHHHHHHHH---HhcccCC--CC-CChhHHHHHHHHHHH
Q 016722 139 AIEDITKRMGAGMAKFICK-----EVESIDDYDEY-CYYVAGLVGLGLSK---LFYASGT--ED-LAPDSLSNSMGLFLQ 206 (384)
Q Consensus 139 lI~~i~~~m~~gm~~dl~~-----~~~t~~dl~~Y-c~~VAG~VG~~l~~---l~~~~~~--~~-~~~~~~A~~lG~alQ 206 (384)
++.+.+..|..|...|+.. .-.|.+++..- -+.+|+......+. +++..+. +. .....++..+|+|+|
T Consensus 172 ~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2q58_A 172 IYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 3444455666788888741 13355665443 44555554433332 2221111 11 224489999999999
Q ss_pred HHHHHhch------HhhhhcCCCCCccccH
Q 016722 207 KTNIIRDY------LEDINEIPKCRMFWPR 230 (384)
Q Consensus 207 ltNIlRDv------~eD~~~~~~gR~ylP~ 230 (384)
+.+=+-|+ +.|+. .|.+=||-
T Consensus 252 I~DDiLD~~~gK~~g~Dl~---egK~T~p~ 278 (368)
T 2q58_A 252 VHNDVSDYLFNDSNADDIC---RFKLTWPL 278 (368)
T ss_dssp HHHHHHHHHSCCCSSCTTT---SCCCCHHH
T ss_pred HHHHHhhcccCCCCCchHh---cCCcHHHH
Confidence 99988884 58999 69999996
No 48
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=73.02 E-value=47 Score=31.00 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=58.9
Q ss_pred hhhhHHHhhhhhh-----cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhchHh
Q 016722 146 RMGAGMAKFICKE-----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLE 216 (384)
Q Consensus 146 ~m~~gm~~dl~~~-----~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~alQltNIlRDv~e 216 (384)
.|..|...|+... -.|.++|..-+.+=.|......+++-.. +|... .....++.++|+|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5778888888532 2355666655544444444444444321 22221 1233789999999999987777754
Q ss_pred hhhcCCCCCccccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016722 217 DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (384)
Q Consensus 217 D~~~~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~y~~~L~ 278 (384)
|. ..-+|. ++ .+..-...+..+..+|...+..++
T Consensus 241 ~~------K~T~p~-l~---------------------gle~a~~~a~~~~~~A~~~L~~l~ 274 (293)
T 2j1p_A 241 SS------KLTYPK-LM---------------------GLEKSREFAEKLNTEARDQLLGFD 274 (293)
T ss_dssp --------CCCHHH-HH---------------------HHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred Cc------cccHHH-HH---------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 43 234443 11 223334556666777777777775
No 49
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=66.20 E-value=78 Score=28.77 Aligned_cols=188 Identities=14% Similarity=0.018 Sum_probs=100.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC-CCcchHHHhhHHHHHHHHHhcCHHH-H
Q 016722 60 TDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG-TKEYKVLMDQFHHVSTAFLELGKGY-Q 137 (384)
Q Consensus 60 ~~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G-~~~~~~l~~~~~~v~~~~~~l~~~~-~ 137 (384)
++....++-+..+.-.+||+-|+.+ .++ ++.+.+.+.. |.-... .+...++...+..+..++....+.+ +
T Consensus 59 ~~rl~~~~k~~~~~~~~DD~~D~~~--~~e----~~~~~~~~~~--~~~~~~lp~~~~~~~~~l~d~~~~~~~~~~~~~~ 130 (300)
T 1di1_A 59 DDRIHFACRLLTVLFLIDDVLEHMS--FAD----GEAYNNRLIP--ISRGDVLPDRTKPEEFILYDLWESMRAHDAELAN 130 (300)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHSC--HHH----HHHHHHHHHH--HHHTSSCCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCC--HHH----HHHHHHHHHH--HccCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 3334467788999999999999854 221 2223333321 110001 1123456666666666554322222 2
Q ss_pred HHHHHHHHhhhhHHHh--hhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-----ChhHHHHHHHHHHHHHH
Q 016722 138 DAIEDITKRMGAGMAK--FIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-----APDSLSNSMGLFLQKTN 209 (384)
Q Consensus 138 ~lI~~i~~~m~~gm~~--dl~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~~-----~~~~~A~~lG~alQltN 209 (384)
.+++.++ .++.. +.. ..++|++||..+-..+.|.--.+.+-.++. |..-+ ....+.+..+...-++|
T Consensus 131 ~~~~~~~----~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~N 205 (300)
T 1di1_A 131 EVLEPTF----VFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVN 205 (300)
T ss_dssp HHHHHHH----HHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333 34421 111 358999999999888777433333323332 11110 12356667777777777
Q ss_pred HHhchHhhhhcCCCCCc---------cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016722 210 IIRDYLEDINEIPKCRM---------FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (384)
Q Consensus 210 IlRDv~eD~~~~~~gR~---------ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~ 272 (384)
=|-.+..... +|-. =.-.=.+..+|++.++ +.+.+.+++.++...+....+
T Consensus 206 Dl~S~~kE~~---~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~~~ 265 (300)
T 1di1_A 206 DIYSYDKEEE---ASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVA 265 (300)
T ss_dssp HHHHTTTTCC---C----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH---hhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666 5541 1222256667776543 566777888887777666553
No 50
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=65.62 E-value=25 Score=32.59 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=44.8
Q ss_pred HHHHHHHH-----HhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHH
Q 016722 137 QDAIEDIT-----KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 205 (384)
Q Consensus 137 ~~lI~~i~-----~~m~~gm~~dl~~--~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~al 205 (384)
.+++..+. ..|..|...|+.. ...|.++|..-+.+=.|....+.+++-.. +|... .....++..+|+|+
T Consensus 136 ~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aF 215 (274)
T 3kra_B 136 LRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLR 215 (274)
T ss_dssp HHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555 3467788888852 36788888776655555555555554322 22221 12347899999999
Q ss_pred HHHH
Q 016722 206 QKTN 209 (384)
Q Consensus 206 QltN 209 (384)
|+.+
T Consensus 216 QI~D 219 (274)
T 3kra_B 216 GMME 219 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9954
No 51
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=61.96 E-value=1e+02 Score=28.61 Aligned_cols=193 Identities=8% Similarity=-0.151 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCC--CcchHHHhhHHHHHHHHHhcC-HHHH
Q 016722 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT--KEYKVLMDQFHHVSTAFLELG-KGYQ 137 (384)
Q Consensus 61 ~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~--~~~~~l~~~~~~v~~~~~~l~-~~~~ 137 (384)
+....++-+..+.-.+||+-|.... .....++.+.+.+.. |. . |. +...++...+..+..++...- +...
T Consensus 64 ~rl~~~ak~~~~~~~~DD~~D~~~~---~~~ee~~~~~~~l~~--~~-~-~~~p~~~~~~~~~l~d~~~~~~~~~~~~~~ 136 (337)
T 1ps1_A 64 ADLDLGVDLMSWFFLFDDLFDGPRG---ENPEDTKQLTDQVAA--AL-D-GPLPDTAPPIAHGFADIWRRTCEGMTPAWC 136 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSGGG---GCHHHHHHHHHHHHG--GG-T-SCCCTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCcCC---CCHHHHHHHHHHHHH--Hc-C-CCCCCCCChHHHHHHHHHHHHhccCCHHHH
Confidence 3334677788899999999987521 112345666666654 22 2 32 123467677777777665432 2323
Q ss_pred HHHHHHHHhhhhHHHhhhh----hhcC-CHHHHHHHHHhhhhHHHHHHHHHhccc-CCCC-----CChhHHHHHHHHHHH
Q 016722 138 DAIEDITKRMGAGMAKFIC----KEVE-SIDDYDEYCYYVAGLVGLGLSKLFYAS-GTED-----LAPDSLSNSMGLFLQ 206 (384)
Q Consensus 138 ~lI~~i~~~m~~gm~~dl~----~~~~-t~~dl~~Yc~~VAG~VG~~l~~l~~~~-~~~~-----~~~~~~A~~lG~alQ 206 (384)
..+.+.+..+..++..-.. ..++ |++||..+-..+.|.--.+.+-.++.. ...+ +....+-+..+...-
T Consensus 137 ~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~r 216 (337)
T 1ps1_A 137 ARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNL 216 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHH
Confidence 3333344444455544332 3578 999999888777765433333333321 1111 111246667788888
Q ss_pred HHHHHhchHhhhhcCCCCCc-cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016722 207 KTNIIRDYLEDINEIPKCRM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (384)
Q Consensus 207 ltNIlRDv~eD~~~~~~gR~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a~~ 272 (384)
++|=|-.+..+.. +|-+ =.-.=.+.++|++.++ +.+.+.+++.++...+.....
T Consensus 217 L~NDl~S~~kE~~---~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 217 LLNDIASLEKEEA---RGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHHHHHTHHHHHH---TTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHh---cCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887 6763 1122356677776544 566677777777777666554
No 52
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=54.22 E-value=1.6e+02 Score=28.44 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=91.3
Q ss_pred hcChhhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccCCCcchHHHhhHHHHHHHHHhcCHHH
Q 016722 57 QLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGY 136 (384)
Q Consensus 57 ~Lp~~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G~~~~~~l~~~~~~v~~~~~~l~~~~ 136 (384)
..+.+....++.+..++=.+||+.|+.. ..+..|.+.+.. |.+..+|++.+|.++..+....-.++
T Consensus 80 ~a~~e~l~liad~~~~~F~lDD~~d~~~-------~~l~~~~~~ll~-------G~~~~~Pl~~al~dl~~rl~~~~~p~ 145 (374)
T 1yyq_A 80 KVSKECMADLSIHYTYTLVLDDSKDDPY-------PTMVNYFDDLQA-------GREQAHPWWALVNEHFPNVLRHFGPF 145 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCSH-------HHHTTHHHHHHH-------TCCCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccccCcH-------HHHHHHHHHHhc-------CCCCCChHHHHHHHHHHHHHHhcCHH
Confidence 4478889999999999999999988632 356666666643 54456789889999887766543332
Q ss_pred --HHHHHHHHHhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHh-cccCC-CCCC---hhHHHHHHHHHHHH
Q 016722 137 --QDAIEDITKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLF-YASGT-EDLA---PDSLSNSMGLFLQK 207 (384)
Q Consensus 137 --~~lI~~i~~~m~~gm~~dl~--~~~~t~~dl~~Yc~~VAG~VG~~l~~l~-~~~~~-~~~~---~~~~A~~lG~alQl 207 (384)
..++..+.. -.+|...... ..+.+.++|-.|-+...|. ++...... ..... +... ...+-..|....-.
T Consensus 146 ~~~rf~~s~~~-~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~ 223 (374)
T 1yyq_A 146 CSLNLIRSTLD-FFEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVW 223 (374)
T ss_dssp HHHHHHHHHHH-HHHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHHhhccccccchhhcchhHHHHHHHHHHHHHh
Confidence 333332221 1123222111 2355777777777777775 44444333 22111 1111 12334444443333
Q ss_pred HHHHhchHhhhh-cCCCCCccccHHHHHhccCChhh
Q 016722 208 TNIIRDYLEDIN-EIPKCRMFWPREIWSKYVNKLED 242 (384)
Q Consensus 208 tNIlRDv~eD~~-~~~~gR~ylP~e~l~~~g~~~~d 242 (384)
+|=|=.+..... + ..+.-+..-+...+|++..+
T Consensus 224 ~NDIlSf~KE~~~~--Gd~~NlV~vl~~~~g~S~~e 257 (374)
T 1yyq_A 224 VNDLMSFYKEFDDE--RDQISLVKNYVVSDEISLHE 257 (374)
T ss_dssp HHHHHHHHHHTTCS--SCCCCHHHHHHHHHTCCHHH
T ss_pred hhhhhccchhhhcc--CCccchhhhehhcCCCCHHH
Confidence 333333333332 1 23455566666677776554
No 53
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=46.50 E-value=66 Score=29.98 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCC-C-CChhHHHHHHHHHHHHHHHH
Q 016722 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTE-D-LAPDSLSNSMGLFLQKTNII 211 (384)
Q Consensus 135 ~~~~lI~~i~~~m~~gm~~dl~~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~-~~~~-~-~~~~~~A~~lG~alQltNIl 211 (384)
...+++.+.+..|..|-..|+...... ..-+.+|+. ..+.+++-.. +|.+ . .....++..+|+|+|+.|=+
T Consensus 133 ~~~~~ls~~~~~~~~GQ~lDl~~~~~~-----~i~~KTg~L-f~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDi 206 (285)
T 4fp4_A 133 DVVTYLADVAQRLSVGQALDLEGERDK-----AAEFKTAPL-IEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDY 206 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHTHHH-HHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccccc-----hhhcCcHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666778888988888522111 333344443 3333332211 1211 1 12347899999999987755
Q ss_pred hchH
Q 016722 212 RDYL 215 (384)
Q Consensus 212 RDv~ 215 (384)
-|+.
T Consensus 207 LD~~ 210 (285)
T 4fp4_A 207 SDEN 210 (285)
T ss_dssp ----
T ss_pred hccC
Confidence 5553
No 54
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=45.77 E-value=80 Score=29.05 Aligned_cols=72 Identities=10% Similarity=-0.026 Sum_probs=38.9
Q ss_pred HHHHHHHH-----HhhhhHHHhhhhh-hcCCHHHHHHH-HHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHH
Q 016722 137 QDAIEDIT-----KRMGAGMAKFICK-EVESIDDYDEY-CYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 205 (384)
Q Consensus 137 ~~lI~~i~-----~~m~~gm~~dl~~-~~~t~~dl~~Y-c~~VAG~VG~~l~~l~~~-~~~~~---~~~~~~A~~lG~al 205 (384)
.+++.++. ..|..|...|+.. .-.+.+.++.- -+.+|+. ....+++-.. +|... .....++..+|+|+
T Consensus 138 ~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lGlaF 216 (273)
T 3qkc_B 138 LRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGTL-HACGAACGAILGGCDEDKIEKLRRFGLYVGTVQ 216 (273)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44555554 3567788888862 22355555433 3445544 4444444221 22211 12347899999999
Q ss_pred HHHH
Q 016722 206 QKTN 209 (384)
Q Consensus 206 QltN 209 (384)
|+.+
T Consensus 217 QI~D 220 (273)
T 3qkc_B 217 GLLG 220 (273)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9854
No 55
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=37.60 E-value=2.4e+02 Score=25.72 Aligned_cols=186 Identities=13% Similarity=0.011 Sum_probs=94.7
Q ss_pred hhhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccccC-CCcchHHHhhHHHHHHHHHhcCHHHHHH
Q 016722 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG-TKEYKVLMDQFHHVSTAFLELGKGYQDA 139 (384)
Q Consensus 61 ~~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~G-~~~~~~l~~~~~~v~~~~~~l~~~~~~l 139 (384)
+....++-+..+.-.+||+-|..+. + .++.|.+.+.. |.-... .+...++...+..+..++....+.+
T Consensus 74 ~rl~~~ak~~~~~~~~DD~~D~~~~--~----e~~~~~~~l~~--~~~~~~~p~~~~~~~~al~d~~~e~~~~~~~~--- 142 (320)
T 3bny_A 74 DRIHFACRLLTVLFLIDDLLEYMSF--E----EGSAYNEKLIP--ISRGDVLPDRSIPVEYIIYDLWESMRAHDREM--- 142 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTSCH--H----HHHHHHHHHHH--HHHTSSCCCTTSHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhhcccccCCh--h----hHHHHHHHHHH--HhcCCCCCCCcCHHHHHHHHHHHHHHhhCHHH---
Confidence 4444678899999999999998542 2 12223333321 110001 1123466666777666654322222
Q ss_pred HHHHHHhhhhHHHh--hhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-----ChhHHHHHHHHHHHHHHHH
Q 016722 140 IEDITKRMGAGMAK--FIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-----APDSLSNSMGLFLQKTNII 211 (384)
Q Consensus 140 I~~i~~~m~~gm~~--dl~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~~-----~~~~~A~~lG~alQltNIl 211 (384)
...+.+.+...+.. ... ..++|++||..+-..+.|.--.+..-.++. |..-+ ....+-+..+...-++|=|
T Consensus 143 ~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl 221 (320)
T 3bny_A 143 ADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDI 221 (320)
T ss_dssp HHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22222222222211 111 358999999999888777433333323332 21111 1124566677777777877
Q ss_pred hchHhhhhcCCCCC--------c-cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016722 212 RDYLEDINEIPKCR--------M-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (384)
Q Consensus 212 RDv~eD~~~~~~gR--------~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a 270 (384)
-.+..... +|- + =.-.=.+..+|++.++ +.+.+.+++......+.+.
T Consensus 222 ~S~~kE~~---~g~~~~~~~~~~~N~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~l 277 (320)
T 3bny_A 222 YSYEKELY---TSKTAHSEGGILCTSVQILAQEADVTAEA---------AKRVLFVMCREWELRHQLL 277 (320)
T ss_dssp HHHHHHCC--------------CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH---hhcccccccccccchHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 77777666 554 1 1122256677776543 4555666666665544443
No 56
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=31.92 E-value=4.1e+02 Score=26.78 Aligned_cols=232 Identities=10% Similarity=0.099 Sum_probs=120.6
Q ss_pred cChhhHHHHHHHHHhcccccCCCC-CchhHHHHHHHHhhcCCcHHHHHHhcCh--hhhhHHHHHHHHHHhhhhhccCCCC
Q 016722 9 RHPDDLYPLLKLKMASRQAEKQIP-PEPHWAFCYSMLHKVSRSFALVIQQLGT--DLRNAVCIFYLVLRALDTVEDDTSI 85 (384)
Q Consensus 9 ~hp~e~~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~l~~~srSF~~a~~~Lp~--~~R~av~alYaf~R~lD~I~D~~~~ 85 (384)
.|-.||..+-+|.---.-.. ..+ .++-+..|+- ..+++.+=|. ..|-.++-.-++.-.+||+=|.-.
T Consensus 234 ~hq~El~~l~rWwk~~~l~~-kl~faRdR~ve~Yf--------w~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~g- 303 (543)
T 2ong_A 234 QFQEELKESFRWWRNTGFVE-KLPFARDRLVECYF--------WNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYG- 303 (543)
T ss_dssp HHHHHHHHHHHHHHHHTHHH-HSCSSCCCHHHHHH--------THHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHHHHcCCcc-cccHHHHHHHHHHH--------HHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 58889999887754322111 011 1222333432 1122233232 335556667778888999998743
Q ss_pred ChhhhHHHHHHHHHHHccccccccc-CC-Cc-chHHHhhHHHHHHHHHhcC--H-H--HHHHHHHHHHhhhhHHHhhh--
Q 016722 86 PTDVKVPILIAFHRHVYDREWHFSC-GT-KE-YKVLMDQFHHVSTAFLELG--K-G--YQDAIEDITKRMGAGMAKFI-- 155 (384)
Q Consensus 86 ~~~~k~~~L~~~~~~l~~~~~~~~~-G~-~~-~~~l~~~~~~v~~~~~~l~--~-~--~~~lI~~i~~~m~~gm~~dl-- 155 (384)
.. ..|+.|-+.+.. |.... +. |. -.++..++..+..++..-- . . ....+.+..+++..++..-.
T Consensus 304 t~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW 377 (543)
T 2ong_A 304 TL----EELEQFTDLIRR--WDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARW 377 (543)
T ss_dssp CH----HHHHHHHHHHHT--TCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHh--cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 347778888764 53220 11 21 3455556666665544211 0 0 01112222333334544333
Q ss_pred -h-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCC-------hhHHHHHHHHHHHHHHHHhchHhhhhcCCCCCc
Q 016722 156 -C-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLA-------PDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM 226 (384)
Q Consensus 156 -~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~~~-------~~~~A~~lG~alQltNIlRDv~eD~~~~~~gR~ 226 (384)
. ..++|++|+......+.|.--.++.-.++..+.-... ...+....+...=+.|=|..+..+.. +|-+
T Consensus 378 ~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~---rG~~ 454 (543)
T 2ong_A 378 FYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVS---RGDV 454 (543)
T ss_dssp HHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHH---TSCC
T ss_pred HHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccc---cCCc
Confidence 2 3488999999988887775444444444432111100 11344444555555666666666666 6653
Q ss_pred --cccHHHHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016722 227 --FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (384)
Q Consensus 227 --ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~ 269 (384)
.+.- .|.++|++.++ +.+-++.++.++...+.+
T Consensus 455 ~n~V~c-yMke~g~s~ee---------A~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 455 PKSLQC-YMSDYNASEAE---------ARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp CCHHHH-HHHHTCCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 2222 45677776544 566688888888886665
No 57
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=29.20 E-value=4.7e+02 Score=26.58 Aligned_cols=187 Identities=9% Similarity=0.097 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHcccccccc-cCCCc--chHHHhhHHHHHHHHHhcC--H-H-
Q 016722 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGTKE--YKVLMDQFHHVSTAFLELG--K-G- 135 (384)
Q Consensus 63 R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~-~G~~~--~~~l~~~~~~v~~~~~~l~--~-~- 135 (384)
|-.++-+-++.-.+||+=|.-. .. ..|+.|-+.+.. |... .+.-+ -.++..++..+..++..-- . .
T Consensus 309 Rl~~aK~~~litviDD~fD~yg-T~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~ 381 (569)
T 2j5c_A 309 RIMLTKINALVTTIDDVFDIYG-TL----EELQLFTTAIQR--WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF 381 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CH----HHHHHHHHHHHH--TSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhccCC-CH----HHHHHHHHHHHH--cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5555667777888999988643 22 346677777763 4321 01112 2455556666655543210 0 0
Q ss_pred -HHHHHHHHHHhhhhHHHhhh---h-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCC-------hhHHHHHHHH
Q 016722 136 -YQDAIEDITKRMGAGMAKFI---C-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLA-------PDSLSNSMGL 203 (384)
Q Consensus 136 -~~~lI~~i~~~m~~gm~~dl---~-~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~~~~~~-------~~~~A~~lG~ 203 (384)
....+.+..+++..++..-. . ..++|++|+......+.|.--.++.-+++....-... ...+....+.
T Consensus 382 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~ 461 (569)
T 2j5c_A 382 DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCT 461 (569)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHH
Confidence 01112222333333544332 2 3479999999988877765444444444432111100 0123333333
Q ss_pred HHHHHHHHhchHhhhhcCCCCCccccHH---HHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016722 204 FLQKTNIIRDYLEDINEIPKCRMFWPRE---IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (384)
Q Consensus 204 alQltNIlRDv~eD~~~~~~gR~ylP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~a 270 (384)
..=+.|=|..+..+.. +|- .+.- .|.++|++. +.+.+-++.++.++...+.+.
T Consensus 462 i~RL~NDI~S~~~E~~---rG~--v~s~V~cyMke~g~s~---------eeA~~~i~~~ie~~wk~ln~e 517 (569)
T 2j5c_A 462 ILRLADDMGTSLDEVE---RGD--VPKSVQCYMNEKNASE---------EEAREHVRSLIDQTWKMMNKE 517 (569)
T ss_dssp HHHHHHHHHC---------------CCHHHHC------CC---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhcc---cCC--ccHHHHHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 444 2221 244556543 446677888999888876553
No 58
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=28.53 E-value=4.8e+02 Score=26.49 Aligned_cols=187 Identities=11% Similarity=0.090 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCCChhhhHHHHHHHHHHHccccccccc--CCCcc-hHHHhhHHHHHHHHHh--cCHH-
Q 016722 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC--GTKEY-KVLMDQFHHVSTAFLE--LGKG- 135 (384)
Q Consensus 62 ~R~av~alYaf~R~lD~I~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~--G~~~~-~~l~~~~~~v~~~~~~--l~~~- 135 (384)
.|..+.-.-++.-.+||+=|.-. . ...|+.|-+.+.. |.... .-|.+ ..+..++..++.++.. .+..
T Consensus 290 ~R~~~aK~~~l~tviDD~yD~yg-t----~eEl~~ft~ai~R--WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g 362 (555)
T 3n0f_A 290 CRNSVAKMFSFVTIIDDIYDVYG-T----LDELELFTDAVER--WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKG 362 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-C----HHHHHHHHHHHHH--TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhccccC-C----HHHHHHHHHHHHh--cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36777788888889999988642 2 2467777777764 54320 11111 2345555555554421 1110
Q ss_pred --HHHHHHHHHHhhhhHHHhhhh----hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccC-CCCC------ChhHHHHHHH
Q 016722 136 --YQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TEDL------APDSLSNSMG 202 (384)
Q Consensus 136 --~~~lI~~i~~~m~~gm~~dl~----~~~~t~~dl~~Yc~~VAG~VG~~l~~l~~~~~-~~~~------~~~~~A~~lG 202 (384)
....+.+..+.+..|+..-.. ..++|++|+.....-+.|.--..++-.++... .... ....+....+
T Consensus 363 ~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 363 ENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHH
Confidence 011222223333445544332 34899999999988877753333333443211 1110 0013344455
Q ss_pred HHHHHHHHHhchHhhhhcCCCCCccccHH---HHHhccCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016722 203 LFLQKTNIIRDYLEDINEIPKCRMFWPRE---IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (384)
Q Consensus 203 ~alQltNIlRDv~eD~~~~~~gR~ylP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~ 269 (384)
...=+.|=|..+..... +|-+ +.- .|.++|++.++ +.+-++.++.++...+.+
T Consensus 443 ~i~RL~NDi~S~~~E~~---rG~v--as~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 443 HIFRLCNDLASASAEIA---RGET--ANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHHHHHHHHHHHHHT---TTCC--CSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhhhh---cCCc--chHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 55555565555555555 5643 332 35567876654 566788888888775543
No 59
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.88 E-value=29 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.7
Q ss_pred CCCccccHHHHHhccCChhhh
Q 016722 223 KCRMFWPREIWSKYVNKLEDL 243 (384)
Q Consensus 223 ~gR~ylP~e~l~~~g~~~~dl 243 (384)
.||+.+|+++..+.|+.+.|-
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDA 41 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCE
T ss_pred CCEEEeCHHHHHHcCCCCCCE
Confidence 699999999999999987764
No 60
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=21.55 E-value=43 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.7
Q ss_pred CCCccccHHHHHhccCChhhh
Q 016722 223 KCRMFWPREIWSKYVNKLEDL 243 (384)
Q Consensus 223 ~gR~ylP~e~l~~~g~~~~dl 243 (384)
.|++-+|+++..+.|+...|-
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCE
T ss_pred CCEEEeCHHHHHHcCcCCCCE
Confidence 699999999999999987764
Done!