BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016723
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 227/375 (60%), Gaps = 14/375 (3%)
Query: 13 SSVALIVGVTGISGLSLAEALKNPTTQGSPWKVYGAARRSPPGWFPTALVDRYITFDALD 72
SSVALIVGVTGI G SLAE L T G PWKVYG ARR+ P W ++ Y+ D D
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPIN-YVQCDISD 59
Query: 73 SADTALKLSLISQEITHLFWLPLQVQESEEVNIFKNSTMLKNVLSALVDSSNGRSCLRHV 132
D+ KLS ++ ++TH+F++ + +E+ N NS M +NVL A++ + L+H+
Sbjct: 60 PDDSQAKLSPLT-DVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN---LKHI 115
Query: 133 ALLTGTKHYMGPIFDPSLAGRLMPYDVPFKEDSPRLPFPNFYYALEDV---AASYSPAIT 189
+L TG KHYMGP G++ +D P+ ED PRL + NFYY LED+ +T
Sbjct: 116 SLQTGRKHYMGPF---ESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLT 172
Query: 190 YSVHRSSVIIGASPRSLYNSLLTLAVYATICKHQGLPFRYFGNKYTWEHFFDVSDSRLLA 249
+SVHR I G SP S+ N + TL VYA ICKH+G R+ G K W+ + D SD+ L+A
Sbjct: 173 WSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIA 232
Query: 250 EQQIWAATTDKAKNQAFNCTNGDVFMWKSLWKLLSEIFDVEFVPFDDEKNEKFDVVEMMK 309
E IWAA AKN+AFN +NGDVF WK WK+L+E F VE +++ + K ++MK
Sbjct: 233 EHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQ--DLMK 290
Query: 310 EKGEIWDEIVEKHGLYKTKLEEITCFEAMKLVLHFEFQHVSSMNKSREFGFFGFVDTMKS 369
K +W+EIV ++GL TKL+++ + ++L E + SMNKS+E GF GF ++ +
Sbjct: 291 GKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNEC-FLDSMNKSKEHGFLGFRNSKNA 349
Query: 370 IRMWVGKLREMKIIP 384
W+ K + KI+P
Sbjct: 350 FISWIDKAKAYKIVP 364
>pdb|4AAY|B Chain B, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|D Chain D, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|F Chain F, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|H Chain H, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 175
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 216 YATICKHQGLPFRYFGNKYTWE--HFFDVSDSRLLAEQQIWAATTDKAKNQAFNCT-NGD 272
++TIC H+G P Y + T+ F V D QQ+W T NGD
Sbjct: 99 FSTICPHKGFPLSYSADNKTFNCPGHFSVFDPE-KGGQQVWGQATQNLPQYVLRVADNGD 157
Query: 273 VF 274
+F
Sbjct: 158 IF 159
>pdb|1V4B|A Chain A, The Crystal Structure Of Azor (Azo Reductase) From
Escherichia Coli: Oxidized Form
pdb|2D5I|A Chain A, The Crystal Structure Of Azor (Azo Reductase) From
Escherichia Coli
pdb|2Z98|A Chain A, The Crystal Structure Of Azor (Azoreductase) From
Escherichia Coli: Oxidized Azor In Tetragonal Crystals
(The Resolution Has Improved From 1.8 (1v4b) To 1.4
Angstrom)
pdb|2Z9B|A Chain A, The Crystal Structure Of Azor (Azoreductase) From
Escherichia Coli: Reduced Azor In Tetragonal Crystals
pdb|2Z9C|A Chain A, The Crystal Structure Of Azor (azoreductase) From
Escherichia Coli: Azor In Complex With Dicoumarol
pdb|2Z9D|A Chain A, The Crystal Structure Of Azor (Azoreductase) From
Escherichia Coli: Oxidized Azor In Orthorhombic Crystals
pdb|2Z9D|B Chain B, The Crystal Structure Of Azor (Azoreductase) From
Escherichia Coli: Oxidized Azor In Orthorhombic Crystals
Length = 200
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 144 PIFDPSLAGRLMPYDVPFKEDSPRLPFPNFYYALEDVAASYSPAITYSVHRSSVIIGASP 203
P+ D L G L P D P +PR + A + S + + VI+ A+P
Sbjct: 48 PVLDGELVGALRPSDAPL---TPR----------QQEALALSDELIAELKAHDVIVIAAP 94
Query: 204 RSLYNSLLTLAVYATICKHQGLPFRYFGN 232
+N L Y + G+ FRY N
Sbjct: 95 MYNFNISTQLKNYFDLVARAGVTFRYTEN 123
>pdb|1TIK|A Chain A, Crystal Structure Of Acyl Carrier Protein
Phosphodiesterase
Length = 213
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 144 PIFDPSLAGRLMPYDVPFKEDSPRLPFPNFYYALEDVAASYSPAITYSVHRSSVIIGASP 203
P+ D L G L P D P +PR + A + S + + VI+ A+P
Sbjct: 51 PVLDGELVGALRPSDAPL---TPR----------QQEALALSDELIAELKAHDVIVIAAP 97
Query: 204 RSLYNSLLTLAVYATICKHQGLPFRYFGN 232
+N L Y + G+ FRY N
Sbjct: 98 XYNFNISTQLKNYFDLVARAGVTFRYTEN 126
>pdb|1T5B|A Chain A, Structural Genomics, A Protein From Salmonella Typhimurium
Similar To E. Coli Acyl Carrier Protein
Phosphodiesterase
pdb|1T5B|B Chain B, Structural Genomics, A Protein From Salmonella Typhimurium
Similar To E. Coli Acyl Carrier Protein
Phosphodiesterase
Length = 201
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 144 PIFDPSLAGRLMPYDVPFKEDSPRLPFPNFYYALEDVAASYSPAITYSVHRSSVIIGASP 203
P+ D L G + P D P +PR + A + S + + VI+ A+P
Sbjct: 49 PVLDGELVGAMRPGDAPL---TPR----------QQDALALSDELIAELKAHDVIVIAAP 95
Query: 204 RSLYNSLLTLAVYATICKHQGLPFRY 229
+N L Y + G+ FRY
Sbjct: 96 MYNFNIPTQLKNYFDLIARAGITFRY 121
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 1 MEKQDQNPKYLSSSVALIVGVTGISGLSLAEALKNPTTQGSPWKVYG 47
+E Q Q P + + LI+GV G G L++ + T W+V+G
Sbjct: 12 LEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTD----WEVFG 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,549,982
Number of Sequences: 62578
Number of extensions: 479543
Number of successful extensions: 1058
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 10
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)