BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016725
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 21/285 (7%)
Query: 86 TKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE 143
T+ V++P L+ES++++F+ + A+ G LS EG VY++ D +LGH
Sbjct: 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDR 149
Query: 144 PHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLI 203
P ++ +L I VV + +Y+ D+ P+L+
Sbjct: 150 PR-VIESLRGIEVVDVAAGGAHSACVTAAGD---LYTWGKGRYGRLGHSDSEDQLKPKLV 205
Query: 204 EQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDV 263
E Q + D V +WG G YG LG G + VP + +L +
Sbjct: 206 EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGL 265
Query: 264 KAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQV 323
+ V G + +++ G VY++G G+ LGH + +V P+ V L+
Sbjct: 266 GVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHVRRPRQVQGLQ-- 315
Query: 324 NERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVN 368
++V+ I+ T S+ H TE G++Y +G D+GQLG N
Sbjct: 316 GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLGDGTTN 355
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 119/280 (42%), Gaps = 14/280 (5%)
Query: 60 MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSRE 119
+ +S G+VY++G+ G+ +G + P+++ESL+ I VV A G +A ++
Sbjct: 120 LALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVAAGGAHSACVTAA 177
Query: 120 GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVY 179
G +YT+ G RLGH + ++P L+ L+ VV I V+
Sbjct: 178 GDLYTWGKGRYGRLGHSDSEDQLKP-KLVEALQGHRVVDIACGSGDAQTLCLTDDDT-VW 235
Query: 180 SVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGR 239
S K P I+ L + + G V TWG G
Sbjct: 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT--KSGAVYTWGKGD 293
Query: 240 YGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA 299
Y LGHG+++ P+ VQ L K I +ATG +EDG+VY++G + LG
Sbjct: 294 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG--- 350
Query: 300 IADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWN 339
DG N + P+LV +L+ V +++ W+
Sbjct: 351 --DGTTN---AIQRPRLVAALQGKKVNRVACGSAHTLAWS 385
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 230 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 289
G + WG G LG VP +AL ++ + + G+ T F V+ DG +Y
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLY---- 75
Query: 290 GESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 349
+ G+ A +V TP L+ S++ V + V ++ H AL+ G
Sbjct: 76 ----ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK-----HCLALSSEG 126
Query: 350 KLYAFGAGDKGQLG 363
++Y++G + G+LG
Sbjct: 127 EVYSWGEAEDGKLG 140
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 25 GKRNLLGREVNGTPLYCRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQ 84
GK G + P+ SL ++ ++ +G VY +GK + +G
Sbjct: 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302
Query: 85 GTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 144
V P+ V+ L+ V+ A G+ + +G VYT+ ++ +LG T N ++
Sbjct: 303 --DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT-TNAIQR 359
Query: 145 HPLLGTLENIPVVQI 159
L+ L+ V ++
Sbjct: 360 PRLVAALQGKKVNRV 374
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 118/290 (40%), Gaps = 25/290 (8%)
Query: 91 SPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTFSWGNDARLGHHTEPNDVEPHPLLG 149
SP + +L +V G T S+ G VY++ WG+ RLGH + P P+
Sbjct: 46 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK- 104
Query: 150 TLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLL 209
L I + QI + V S D P+ I+ F+ +
Sbjct: 105 ALHGIRIKQIACGDSHCLAVTMEGE---VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 161
Query: 210 NLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 269
++ +DG + WGWGRYG LG G+ VP+ V + K VA
Sbjct: 162 RIKMVAAGAEHTAAVT--EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 270 TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQ 329
G T VS G +Y++G + LGH + D L P + +L N + Q
Sbjct: 220 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLED--------HLIPHKLEALS--NSFISQ 269
Query: 330 ISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERV 379
IS W HT ALT GKLY +G GQ+G V N ++ +P +V
Sbjct: 270 ISGG----WR-HTMALTSDGKLYGWGWNKFGQVG---VGNNLDQCSPVQV 311
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 28/268 (10%)
Query: 99 KNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHP---LLGTLENIP 155
+ + ++ A + A+LS + V ++ G D +LGH D E P L L+
Sbjct: 4 RKVLIISAGA-SHSVALLSGD-IVCSWGRGEDGQLGH----GDAEDRPSPTQLSALDGHQ 57
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
+V + SGM VYS + +D P I+ + ++
Sbjct: 58 IVSVTCGADHTVAYSQ--SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
+G V +WG + G LG G+ E VP+ +QA ++ VA G T
Sbjct: 116 CGDSHCLAVT--MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Query: 276 FVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNS 335
V+EDGD+Y +G G +L G G+R + L P+ VTS E++ ++
Sbjct: 174 AAVTEDGDLYGWGWGRYGNL-------GLGDR-TDRLVPERVTSTG--GEKMSMVACG-- 221
Query: 336 IYWNAHTFALTESGKLYAFGAGDKGQLG 363
W HT +++ SG LY +G GQLG
Sbjct: 222 --WR-HTISVSYSGALYTYGWSKYGQLG 246
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 34/312 (10%)
Query: 59 TMLISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 117
T+ S +G +VY++G FG +G + L T P +++L I + Q A G+ ++
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVT 125
Query: 118 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMA 177
EG V ++ + +LG + + P + E I + +
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGD--- 181
Query: 178 VYSVXXXXXXXXXXXSRTDEKHPRLI-----EQFQLLNLQPXXXXXXXXXXXXXGQDGRV 232
+Y RTD P + E+ ++ G +
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC-------GWRHTISVSYSGAL 234
Query: 233 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGES 292
T+GW +YG LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G +
Sbjct: 235 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 294
Query: 293 ASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 352
+ G GN N+ V +++VVQ+S W HT A+TE ++
Sbjct: 295 GQV-------GVGN---NLDQCSPVQVRFPDDQKVVQVSCG----WR-HTLAVTERNNVF 339
Query: 353 AFGAGDKGQLGI 364
A+G G GQLGI
Sbjct: 340 AWGRGTNGQLGI 351
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 232 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 290
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 84
Query: 291 ESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350
+ LGH +D + TP + +L + R+ QI+ +S H A+T G+
Sbjct: 85 DFGRLGHGNSSD--------LFTPLPIKALHGI--RIKQIACGDS-----HCLAVTMEGE 129
Query: 351 LYAFGAGDKGQLGI 364
+ ++G GQLG+
Sbjct: 130 VQSWGRNQNGQLGL 143
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)
Query: 37 TPLYCRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE 96
TPL ++L + ++ G+V ++G++ G+ G LV PQ ++
Sbjct: 99 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQ 156
Query: 97 SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIP 155
+ + I + A G TA ++ +G +Y + WG LG + + P + T E +
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
+V A+Y+ D P +E L N
Sbjct: 217 MVACGWRHTISVSYSG-----ALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQ 269
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
DG++ WGW ++G +G GN + P V+ +D K + V+ G T
Sbjct: 270 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHT 329
Query: 276 FVVSEDGDVYSFGCGESASLG 296
V+E +V+++G G + LG
Sbjct: 330 LAVTERNNVFAWGRGTNGQLG 350
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 118/290 (40%), Gaps = 25/290 (8%)
Query: 91 SPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTFSWGNDARLGHHTEPNDVEPHPLLG 149
SP + +L +V G T S+ G VY++ WG+ RLGH + P P+
Sbjct: 58 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK- 116
Query: 150 TLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLL 209
L I + QI + V S D P+ I+ F+ +
Sbjct: 117 ALHGIRIKQIACGDSHCLAVTMEGE---VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 173
Query: 210 NLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 269
++ +DG + WGWGRYG LG G+ VP+ V + K VA
Sbjct: 174 RIKMVAAGAEHTAAVT--EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 231
Query: 270 TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQ 329
G T VS G +Y++G + LGH + D L P + +L N + Q
Sbjct: 232 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLED--------HLIPHKLEALS--NSFISQ 281
Query: 330 ISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERV 379
IS W HT ALT GKLY +G GQ+G V N ++ +P +V
Sbjct: 282 ISGG----WR-HTMALTSDGKLYGWGWNKFGQVG---VGNNLDQCSPVQV 323
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 28/268 (10%)
Query: 99 KNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHP---LLGTLENIP 155
+ + ++ A + A+LS + V ++ G D +LGH D E P L L+
Sbjct: 16 RKVLIISAG-ASHSVALLSGD-IVCSWGRGEDGQLGH----GDAEDRPSPTQLSALDGHQ 69
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
+V + SGM VYS + +D P I+ + ++
Sbjct: 70 IVSVTCGADHTVAYSQ--SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 127
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
+G V +WG + G LG G+ E VP+ +QA ++ VA G T
Sbjct: 128 CGDSHCLAVT--MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 185
Query: 276 FVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNS 335
V+EDGD+Y +G G +L G G+R + L P+ VTS E++ ++
Sbjct: 186 AAVTEDGDLYGWGWGRYGNL-------GLGDR-TDRLVPERVTSTG--GEKMSMVACG-- 233
Query: 336 IYWNAHTFALTESGKLYAFGAGDKGQLG 363
W HT +++ SG LY +G GQLG
Sbjct: 234 --WR-HTISVSYSGALYTYGWSKYGQLG 258
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 34/312 (10%)
Query: 59 TMLISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 117
T+ S +G +VY++G FG +G + L T P +++L I + Q A G+ ++
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVT 137
Query: 118 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMA 177
EG V ++ + +LG + + P + E I + +
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGD--- 193
Query: 178 VYSVXXXXXXXXXXXSRTDEKHPRLI-----EQFQLLNLQPXXXXXXXXXXXXXGQDGRV 232
+Y RTD P + E+ ++ G +
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC-------GWRHTISVSYSGAL 246
Query: 233 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGES 292
T+GW +YG LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G +
Sbjct: 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306
Query: 293 ASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 352
+ G GN N+ V +++VVQ+S W HT A+TE ++
Sbjct: 307 GQV-------GVGN---NLDQCSPVQVRFPDDQKVVQVSCG----WR-HTLAVTERNNVF 351
Query: 353 AFGAGDKGQLGI 364
A+G G GQLGI
Sbjct: 352 AWGRGTNGQLGI 363
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 232 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 290
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 96
Query: 291 ESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350
+ LGH +D + TP + +L + R+ QI+ +S H A+T G+
Sbjct: 97 DFGRLGHGNSSD--------LFTPLPIKALHGI--RIKQIACGDS-----HCLAVTMEGE 141
Query: 351 LYAFGAGDKGQLGI 364
+ ++G GQLG+
Sbjct: 142 VQSWGRNQNGQLGL 155
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)
Query: 37 TPLYCRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE 96
TPL ++L + ++ G+V ++G++ G+ G LV PQ ++
Sbjct: 111 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQ 168
Query: 97 SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIP 155
+ + I + A G TA ++ +G +Y + WG LG + + P + T E +
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 228
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
+V A+Y+ D P +E L N
Sbjct: 229 MVACGWRHTISVSYSG-----ALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQ 281
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
DG++ WGW ++G +G GN + P V+ +D K + V+ G T
Sbjct: 282 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHT 341
Query: 276 FVVSEDGDVYSFGCGESASLG 296
V+E +V+++G G + LG
Sbjct: 342 LAVTERNNVFAWGRGTNGQLG 362
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 118/290 (40%), Gaps = 25/290 (8%)
Query: 91 SPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTFSWGNDARLGHHTEPNDVEPHPLLG 149
SP + +L +V G T S+ G VY++ WG+ RLGH + P P+
Sbjct: 48 SPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIK- 106
Query: 150 TLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLL 209
L I + QI + V S D P+ I+ F+ +
Sbjct: 107 ALHGIRIKQIACGDSHCLAVTXEGE---VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 163
Query: 210 NLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 269
++ +DG + WGWGRYG LG G+ VP+ V + K VA
Sbjct: 164 RIKXVAAGAEHTAAVT--EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVA 221
Query: 270 TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQ 329
G T VS G +Y++G + LGH + D L P + +L N + Q
Sbjct: 222 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLED--------HLIPHKLEALS--NSFISQ 271
Query: 330 ISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERV 379
IS HT ALT GKLY +G GQ+G V N ++ +P +V
Sbjct: 272 ISGGAR-----HTXALTSDGKLYGWGWNKFGQVG---VGNNLDQCSPVQV 313
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 232 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 290
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 27 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWG 86
Query: 291 ESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350
+ LGH +D + TP + +L + R+ QI+ +S H A+T G+
Sbjct: 87 DFGRLGHGNSSD--------LFTPLPIKALHGI--RIKQIACGDS-----HCLAVTXEGE 131
Query: 351 LYAFGAGDKGQLGI 364
+ ++G GQLG+
Sbjct: 132 VQSWGRNQNGQLGL 145
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 10/261 (3%)
Query: 37 TPLYCRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE 96
TPL ++L + ++ G+V ++G++ G+ G LV PQ ++
Sbjct: 101 TPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQ 158
Query: 97 SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIP 155
+ + I + A G TA ++ +G +Y + WG LG + + P + T E
Sbjct: 159 AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXS 218
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
V A+Y+ D P +E L N
Sbjct: 219 XVACGWRHTISVSYSG-----ALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQ 271
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
DG++ WGW ++G +G GN + P V+ +D K + V+ G T
Sbjct: 272 ISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHT 331
Query: 276 FVVSEDGDVYSFGCGESASLG 296
V+E +V+++G G + LG
Sbjct: 332 LAVTERNNVFAWGRGTNGQLG 352
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 117/290 (40%), Gaps = 25/290 (8%)
Query: 91 SPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTFSWGNDARLGHHTEPNDVEPHPLLG 149
SP + +L +V G T S+ G VY++ WG+ RLGH + P P+
Sbjct: 46 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK- 104
Query: 150 TLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLL 209
L I + QI + V S D P+ I+ F+ +
Sbjct: 105 ALHGIRIKQIACGDSHCLAVTMEGE---VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 161
Query: 210 NLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 269
++ +DG + WGWGRYG LG G+ VP+ V + K VA
Sbjct: 162 RIKMVAAGAEHTAAVT--EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 270 TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQ 329
G T VS G +Y++G + LGH + D L P + +L N + Q
Sbjct: 220 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLED--------HLIPHKLEALS--NSFISQ 269
Query: 330 ISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERV 379
IS HT ALT GKLY +G GQ+G V N ++ +P +V
Sbjct: 270 ISGGFR-----HTMALTSDGKLYGWGWNKFGQVG---VGNNLDQCSPVQV 311
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 28/268 (10%)
Query: 99 KNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHP---LLGTLENIP 155
+ + ++ A + A+LS + V ++ G D +LGH D E P L L+
Sbjct: 4 RKVLIISAGA-SHSVALLSGD-IVCSWGRGEDGQLGH----GDAEDRPSPTQLSALDGHQ 57
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
+V + SGM VYS + +D P I+ + ++
Sbjct: 58 IVSVTCGADHTVAYSQ--SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
+G V +WG + G LG G+ E VP+ +QA ++ VA G T
Sbjct: 116 CGDSHCLAVT--MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Query: 276 FVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNS 335
V+EDGD+Y +G G +L G G+R + L P+ VTS E++ ++
Sbjct: 174 AAVTEDGDLYGWGWGRYGNL-------GLGDR-TDRLVPERVTSTG--GEKMSMVACG-- 221
Query: 336 IYWNAHTFALTESGKLYAFGAGDKGQLG 363
W HT +++ SG LY +G GQLG
Sbjct: 222 --WR-HTISVSYSGALYTYGWSKYGQLG 246
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 34/312 (10%)
Query: 59 TMLISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 117
T+ S +G +VY++G FG +G + L T P +++L I + Q A G+ ++
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVT 125
Query: 118 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMA 177
EG V ++ + +LG + + P + E I + +
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGD--- 181
Query: 178 VYSVXXXXXXXXXXXSRTDEKHPRLI-----EQFQLLNLQPXXXXXXXXXXXXXGQDGRV 232
+Y RTD P + E+ ++ G +
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC-------GWRHTISVSYSGAL 234
Query: 233 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGES 292
T+GW +YG LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G +
Sbjct: 235 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKF 294
Query: 293 ASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 352
+ G GN N+ V +++VVQ+S W HT A+TE ++
Sbjct: 295 GQV-------GVGN---NLDQCSPVQVRFPDDQKVVQVSCG----WR-HTLAVTERNNVF 339
Query: 353 AFGAGDKGQLGI 364
A+G G GQLGI
Sbjct: 340 AWGRGTNGQLGI 351
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 232 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 290
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 84
Query: 291 ESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350
+ LGH +D + TP + +L + R+ QI+ +S H A+T G+
Sbjct: 85 DFGRLGHGNSSD--------LFTPLPIKALHGI--RIKQIACGDS-----HCLAVTMEGE 129
Query: 351 LYAFGAGDKGQLGI 364
+ ++G GQLG+
Sbjct: 130 VQSWGRNQNGQLGL 143
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 10/261 (3%)
Query: 37 TPLYCRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE 96
TPL ++L + ++ G+V ++G++ G+ G LV PQ ++
Sbjct: 99 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQ 156
Query: 97 SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL-ENIP 155
+ + I + A G TA ++ +G +Y + WG LG + + P + T E +
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 156 VVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXX 215
+V A+Y+ D P +E L N
Sbjct: 217 MVACGWRHTISVSYSG-----ALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQ 269
Query: 216 XXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTT 275
DG++ WGW ++G +G GN + P V+ +D K + V+ G T
Sbjct: 270 ISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHT 329
Query: 276 FVVSEDGDVYSFGCGESASLG 296
V+E +V+++G G + LG
Sbjct: 330 LAVTERNNVFAWGRGTNGQLG 350
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 228 QDGRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 286
+ G V T G G G LG G E P +V DV + G T +S+ G VYS
Sbjct: 25 EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYS 82
Query: 287 FGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALT 346
FGC + +LG + +G ++V ++ E+VVQ+S +S HT ALT
Sbjct: 83 FGCNDEGALGRDTSVEGS----------EMVPGKVELQEKVVQVSAGDS-----HTAALT 127
Query: 347 ESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 383
+ G+++ +G+ I L+ + P +V +D+
Sbjct: 128 DDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV 164
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 229 DGRVCTWGWGR--YGCLGHGNEECES-VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 285
DGRV WG R G +G +S VP VQ DV + VA+G+ +++ DGD+Y
Sbjct: 129 DGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLY 186
Query: 286 SFGCGESASLGH-NAIADGQGNRHA--NVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT 342
+ GCGE LG + +G R +L P+ V LK R + ++ T
Sbjct: 187 TLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM-LKSRGSR-GHVRFQDAFCGAYFT 244
Query: 343 FALTESGKLYAFGAGDKGQLG 363
FA++ G +Y FG + QLG
Sbjct: 245 FAISHEGHVYGFGLSNYHQLG 265
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 229 DGRVCTWGWGRYGCLGH---------GNEECES--VPKVVQALNDVKAIHVA-----TGD 272
DG + T G G G LG G + E VPK V + HV G
Sbjct: 182 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241
Query: 273 YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISL 332
Y TF +S +G VY FG LG + PQ +TS K + V S
Sbjct: 242 YFTFAISHEGHVYGFGLSNYHQLGTPGTE--------SCFIPQNLTSFKNSTKSWVGFSG 293
Query: 333 TNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 364
HT + GK Y+ G + G+LG+
Sbjct: 294 GQH-----HTVCMDSEGKAYSLGRAEYGRLGL 320
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 59 TMLISDAGQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 116
T+ +S +GQVY+FG + G + V+G+++V P VE + VVQ + G+ TA L
Sbjct: 71 TVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV--PGKVELQEK--VVQVSAGDSHTAAL 126
Query: 117 SREGRVYTFSWG----NDARLGHHTEPNDVEPHPLLGTLENIPVVQI 159
+ +GRV F WG N+ +G EP P+ L ++PVV++
Sbjct: 127 TDDGRV--FLWGSFRDNNGVIG-LLEPMKKSMVPVQVQL-DVPVVKV 169
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 59 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 118
T+ + G+ Y+ G+ +G G +G + + P L+ L + V A G +++
Sbjct: 298 TVCMDSEGKAYSLGRAEYGRLGLG-EGAEEKSIPTLISRLPAVSSV--ACGASVGYAVTK 354
Query: 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQI 159
+GRV+ + G + +LG + + P ++G LEN V+ +
Sbjct: 355 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 396
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 28/157 (17%)
Query: 228 QDGRVCTWGWGRYGCLGH-GNEECESVPKVVQALNDVKA-IHVATGDYTTFVVSEDGDVY 285
+G V +G Y LG G E C + N K+ + + G + T + +G Y
Sbjct: 249 HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAY 308
Query: 286 SFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFAL 345
S G E LG G+G ++ P L++ L V+ S+ +A+
Sbjct: 309 SLGRAEYGRLGL-----GEGAEEKSI--PTLISRLPAVSSVACGASVG---------YAV 352
Query: 346 TESGKLYAFGAGDKGQLG----------IELVNNQTE 372
T+ G+++A+G G QLG +E++ Q E
Sbjct: 353 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLE 389
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 59 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFV--VQAAIGNFFTAVL 116
T IS G VY FG ++ + G GT+ PQ + S KN V + G T +
Sbjct: 244 TFAISHEGHVYGFGLSNY--HQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCM 301
Query: 117 SREGRVYTFSWGNDARLG 134
EG+ Y+ RLG
Sbjct: 302 DSEGKAYSLGRAEYGRLG 319
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 103 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHP 146
VVQA G T LS+ G+VY+F ++ LG T E P
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVP 104
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 230 GRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 288
G V T G G G LG G E P +V DV + G T +S+ G VYSFG
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYSFG 73
Query: 289 CGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTES 348
C + +LG + +G ++V ++ E+VVQ+S +S HT ALT+
Sbjct: 74 CNDEGALGRDTSVEGS----------EMVPGKVELQEKVVQVSAGDS-----HTAALTDD 118
Query: 349 GKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 383
G+++ +G+ I L+ + P +V +D+
Sbjct: 119 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV 153
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 229 DGRVCTWGWGR--YGCLGHGNEECES-VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 285
DGRV WG R G +G +S VP VQ DV + VA+G+ +++ DGD+Y
Sbjct: 118 DGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLY 175
Query: 286 SFGCGESASLGH-NAIADGQGNRHA--NVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT 342
+ GCGE LG + +G R +L P+ V LK R + ++ T
Sbjct: 176 TLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM-LKSRGSR-GHVRFQDAFCGAYFT 233
Query: 343 FALTESGKLYAFGAGDKGQLG 363
FA++ G +Y FG + QLG
Sbjct: 234 FAISHEGHVYGFGLSNYHQLG 254
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 229 DGRVCTWGWGRYGCLGH---------GNEECES--VPKVVQALNDVKAIHVA-----TGD 272
DG + T G G G LG G + E VPK V + HV G
Sbjct: 171 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 230
Query: 273 YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISL 332
Y TF +S +G VY FG LG + PQ +TS K + V S
Sbjct: 231 YFTFAISHEGHVYGFGLSNYHQLGTPGTE--------SCFIPQNLTSFKNSTKSWVGFSG 282
Query: 333 TNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 364
HT + GK Y+ G + G+LG+
Sbjct: 283 GQH-----HTVCMDSEGKAYSLGRAEYGRLGL 309
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 59 TMLISDAGQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 116
T+ +S +GQVY+FG + G + V+G+++V P VE + VVQ + G+ TA L
Sbjct: 60 TVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV--PGKVELQEK--VVQVSAGDSHTAAL 115
Query: 117 SREGRVYTFSWG----NDARLGHHTEPNDVEPHPLLGTLENIPVVQI 159
+ +GRV F WG N+ +G EP P+ L ++PVV++
Sbjct: 116 TDDGRV--FLWGSFRDNNGVIG-LLEPMKKSMVPVQVQL-DVPVVKV 158
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 59 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 118
T+ + G+ Y+ G+ +G G +G + + P L+ L + V A G +++
Sbjct: 287 TVCMDSEGKAYSLGRAEYGRLGLG-EGAEEKSIPTLISRLPAVSSV--ACGASVGYAVTK 343
Query: 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQI 159
+GRV+ + G + +LG + + P ++G LEN V+ +
Sbjct: 344 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 385
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 28/157 (17%)
Query: 228 QDGRVCTWGWGRYGCLGH-GNEECESVPKVVQALNDVKA-IHVATGDYTTFVVSEDGDVY 285
+G V +G Y LG G E C + N K+ + + G + T + +G Y
Sbjct: 238 HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAY 297
Query: 286 SFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFAL 345
S G E LG G+G ++ P L++ L V+ S+ +A+
Sbjct: 298 SLGRAEYGRLGL-----GEGAEEKSI--PTLISRLPAVSSVACGASVG---------YAV 341
Query: 346 TESGKLYAFGAGDKGQLG----------IELVNNQTE 372
T+ G+++A+G G QLG +E++ Q E
Sbjct: 342 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLE 378
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 59 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFV--VQAAIGNFFTAVL 116
T IS G VY FG ++ + G GT+ PQ + S KN V + G T +
Sbjct: 233 TFAISHEGHVYGFGLSNY--HQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCM 290
Query: 117 SREGRVYTFSWGNDARLG 134
EG+ Y+ RLG
Sbjct: 291 DSEGKAYSLGRAEYGRLG 308
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 103 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHP 146
VVQA G T LS+ G+VY+F ++ LG T E P
Sbjct: 50 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVP 93
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 230 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 289
G V G G G LG G + E ++ A+ ++ G V+++ GD+YSFGC
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILER-KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC 101
Query: 290 GESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 349
+ +LG + DG ++ P L+ + + + IS +S H+ L E G
Sbjct: 102 NDEGALGRDTSEDGSESK------PDLI----DLPGKALCISAGDS-----HSACLLEDG 146
Query: 350 KLYAFGA--GDKGQLGIELVNNQTERGNPERVDIDL 383
+++A+G+ G +G+ + N+ R IDL
Sbjct: 147 RVFAWGSFRDSHGNMGLTIDGNK-------RTPIDL 175
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 260 LNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTS 319
L D++ H+A G + T +++ D G E LG + D V P +V
Sbjct: 293 LKDIR--HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-------VVEKPTIV-- 341
Query: 320 LKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 364
K++ E++V + ++A+T GKLY++G+G QLG+
Sbjct: 342 -KKLTEKIVSVGCGEVC-----SYAVTIDGKLYSWGSGVNNQLGV 380
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 240 YGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHN 298
YG LG G+ ++ P +V+ L + K + V G+ ++ V+ DG +YS+G G + LG
Sbjct: 323 YGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG-- 379
Query: 299 AIADG 303
+ DG
Sbjct: 380 -VGDG 383
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 120/302 (39%), Gaps = 45/302 (14%)
Query: 92 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEPNDVEPHPL 147
P L E K VVQ A + + L G VY +WG N+ LG + + ++ P
Sbjct: 142 PPLAEGHK---VVQLAATDNMSCALFSNGEVY--AWGTFRCNEGILGFYQDKIKIQKTPW 196
Query: 148 -LGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQF 206
+ T +VQ+ P + + + ++ +++E+F
Sbjct: 197 KVPTFSKYNIVQLA------------PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244
Query: 207 QLLNLQPXXXXXXXXXXXXXGQ--------DGRVCTWGWGRYGCLGHGNEECE-----SV 253
+L L P G+ D ++ +WG ++G G +E+ E +
Sbjct: 245 RLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGV-SEDVEDGALVTK 303
Query: 254 PKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG---HNAIADGQGNRHAN 310
PK + ++V +A G++ + ++S+DGD+YS G + +G N + H
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363
Query: 311 VLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQ 370
L T L V + + + H+ A+ ++G Y++G G+ +G+ +
Sbjct: 364 ARAVPLPTKLNNVPK------FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417
Query: 371 TE 372
TE
Sbjct: 418 TE 419
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 232 VCTWGWGRYGCLGHG----NEECESVPKVVQAL--NDVKAIHVATGDYTTFVVSEDGDVY 285
+ WG G LG G N+E + P++ L ++ K I A G T + E+ +V+
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKR-PRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 286 SFGCGESASLGHN 298
S+GC + +LG +
Sbjct: 90 SWGCNDVGALGRD 102
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 66 GQVYAFGKDSFGEAEYGV--QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 123
G+VYA+G E G K+ +P V + +VQ A G L EG V
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV- 225
Query: 124 TFSWGN 129
F+WGN
Sbjct: 226 -FAWGN 230
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 24 NGKRNLLGREV----NGTPLYCRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEA 79
NG++N LGR+V L R ++ ++ ++G + FG+
Sbjct: 230 NGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQC 289
Query: 80 --EYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 124
V+ LVT P+ + N+ + A G + +LS++G +Y+
Sbjct: 290 GVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYS 336
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 278 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIY 337
++ D V+SF ++A ++ ++ G + P+L++ +K+V++ VQ LT
Sbjct: 85 LNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRP-- 142
Query: 338 WNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID 382
E+ L L E + + G PE++D++
Sbjct: 143 ---------EAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLN 178
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 278 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIY 337
++ D V+SF ++A ++ ++ G + P+L++ +K+V++ VQ LT
Sbjct: 85 LNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRP-- 142
Query: 338 WNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID 382
E+ L L E + + G PE++D++
Sbjct: 143 ---------EAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLN 178
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 249 ECESVPKVVQALNDVKAIHVATGDYTTFVVS-------EDGDVYSFGCGESASLGHNAIA 301
EC+++ K L V+ H +G Y ++V G Y F CG G +
Sbjct: 295 ECQNLGK----LTTVQIGHDNSGLYAKWLVECVMVRNEVTGHTYKFPCGRWLGKGMD--- 347
Query: 302 DGQGNRHANVLTPQLVTSLKQVNER 326
DG R VL +L+TSL +V+ER
Sbjct: 348 DGSLER---VLVGELLTSLPEVDER 369
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 274 TTFVVSEDGDVYSF-GCGESASLGHNAIAD 302
+ + + EDGD +++ GCG + +L H A+ D
Sbjct: 286 SYYWIREDGDYHNWTGCGNTLNLSHPAVVD 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,618,958
Number of Sequences: 62578
Number of extensions: 397829
Number of successful extensions: 1060
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 96
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)