Query 016725
Match_columns 384
No_of_seqs 143 out of 1753
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 7.6E-50 1.6E-54 369.3 26.8 341 17-380 68-440 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.4E-40 3.1E-45 307.8 23.2 305 57-380 59-389 (476)
3 KOG1427 Uncharacterized conser 100.0 1.7E-40 3.7E-45 288.9 17.0 318 32-380 41-376 (443)
4 KOG1427 Uncharacterized conser 100.0 3E-37 6.5E-42 268.7 15.3 306 16-348 76-399 (443)
5 KOG0783 Uncharacterized conser 99.9 1.8E-27 4E-32 230.9 12.9 275 60-358 136-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.3E-25 2.8E-30 218.2 14.5 301 15-356 140-456 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.8E-21 3.8E-26 196.3 20.8 271 46-332 568-884 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 1.7E-20 3.6E-25 189.4 23.7 322 16-380 497-869 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 7.4E-12 1.6E-16 84.0 5.6 50 65-116 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 2.7E-11 5.8E-16 81.3 4.3 50 229-278 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 2E-10 4.4E-15 67.3 4.4 30 103-132 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 2.7E-10 5.8E-15 66.8 4.2 30 49-78 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 2.4E-11 5.3E-16 120.5 -7.6 146 37-187 4-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.8 1.3E-10 2.8E-15 115.5 -5.0 135 211-360 14-156 (850)
15 KOG0943 Predicted ubiquitin-pr 94.5 0.0049 1.1E-07 64.5 -2.3 166 14-188 327-509 (3015)
16 KOG3669 Uncharacterized conser 94.4 3.1 6.8E-05 41.2 16.3 108 108-235 190-299 (705)
17 KOG3669 Uncharacterized conser 93.8 7.9 0.00017 38.6 17.7 69 212-287 228-299 (705)
18 KOG0315 G-protein beta subunit 93.7 4.9 0.00011 35.8 17.4 109 155-290 85-197 (311)
19 PF11725 AvrE: Pathogenicity f 93.5 1 2.2E-05 50.0 12.3 245 48-354 490-769 (1774)
20 KOG0315 G-protein beta subunit 93.4 5.4 0.00012 35.6 17.4 169 153-357 8-197 (311)
21 KOG0646 WD40 repeat protein [G 92.5 11 0.00023 36.6 19.8 157 102-288 83-245 (476)
22 KOG0943 Predicted ubiquitin-pr 90.9 0.026 5.7E-07 59.4 -2.8 133 100-242 373-509 (3015)
23 PF07569 Hira: TUP1-like enhan 88.4 3 6.5E-05 36.9 8.5 68 48-125 14-92 (219)
24 PF07569 Hira: TUP1-like enhan 86.5 4.2 9.1E-05 35.9 8.3 30 262-291 12-41 (219)
25 KOG0649 WD40 repeat protein [G 84.6 26 0.00057 31.3 11.8 47 100-147 62-109 (325)
26 KOG1900 Nuclear pore complex, 79.0 1.1E+02 0.0024 34.0 20.0 176 59-245 92-279 (1311)
27 KOG0291 WD40-repeat-containing 78.6 89 0.0019 32.6 21.2 120 49-186 300-424 (893)
28 PF11725 AvrE: Pathogenicity f 74.4 30 0.00066 39.2 10.9 110 155-282 704-815 (1774)
29 PF02239 Cytochrom_D1: Cytochr 73.0 74 0.0016 30.5 12.4 118 46-181 26-155 (369)
30 PLN02153 epithiospecifier prot 72.6 86 0.0019 29.5 23.3 17 164-184 130-146 (341)
31 TIGR03548 mutarot_permut cycli 72.2 83 0.0018 29.3 12.5 17 342-358 217-233 (323)
32 KOG1408 WD40 repeat protein [F 70.6 76 0.0017 32.9 11.9 67 59-126 170-247 (1080)
33 KOG1274 WD40 repeat protein [G 69.7 1.4E+02 0.003 31.9 13.7 70 108-183 13-85 (933)
34 smart00706 TECPR Beta propelle 67.9 13 0.00029 21.9 4.0 25 47-71 8-33 (35)
35 KOG0293 WD40 repeat-containing 67.8 44 0.00096 32.1 9.1 75 153-239 395-471 (519)
36 PF04841 Vps16_N: Vps16, N-ter 66.9 1.3E+02 0.0028 29.3 19.0 69 47-125 81-152 (410)
37 PHA03098 kelch-like protein; P 66.7 1.2E+02 0.0026 30.6 13.1 17 220-237 381-397 (534)
38 cd00200 WD40 WD40 domain, foun 66.3 87 0.0019 27.0 27.7 108 48-183 53-164 (289)
39 KOG4441 Proteins containing BT 65.7 1.7E+02 0.0036 30.1 15.6 57 225-289 471-530 (571)
40 COG4257 Vgb Streptogramin lyas 65.0 74 0.0016 29.2 9.5 140 54-235 61-205 (353)
41 cd00200 WD40 WD40 domain, foun 62.9 1E+02 0.0022 26.6 28.6 109 48-184 11-123 (289)
42 PF04762 IKI3: IKI3 family; I 58.6 2.5E+02 0.0055 30.7 14.1 172 39-234 421-605 (928)
43 KOG4441 Proteins containing BT 57.5 2.3E+02 0.005 29.1 14.9 60 277-356 471-530 (571)
44 KOG0293 WD40 repeat-containing 55.9 2E+02 0.0044 27.9 11.8 69 156-239 443-514 (519)
45 PHA02713 hypothetical protein; 55.5 2.4E+02 0.0053 28.7 13.2 14 276-289 458-471 (557)
46 PF06739 SBBP: Beta-propeller 55.2 13 0.00028 22.7 2.3 18 222-239 16-33 (38)
47 PF12341 DUF3639: Protein of u 55.1 36 0.00078 19.1 3.8 25 47-71 2-26 (27)
48 KOG0278 Serine/threonine kinas 54.6 1.7E+02 0.0036 26.5 12.9 83 141-243 133-218 (334)
49 PHA02790 Kelch-like protein; P 53.8 1.8E+02 0.0039 29.0 11.5 13 278-290 443-455 (480)
50 KOG4693 Uncharacterized conser 52.3 1.5E+02 0.0032 27.1 9.2 19 218-237 78-96 (392)
51 KOG1274 WD40 repeat protein [G 49.8 3.6E+02 0.0078 29.0 21.3 69 55-127 14-85 (933)
52 COG4257 Vgb Streptogramin lyas 47.5 1.6E+02 0.0036 27.0 8.8 108 48-182 94-206 (353)
53 KOG1900 Nuclear pore complex, 46.3 3.5E+02 0.0077 30.4 12.5 165 168-360 94-275 (1311)
54 PHA03098 kelch-like protein; P 46.2 3.2E+02 0.007 27.4 17.7 15 60-74 289-303 (534)
55 KOG1034 Transcriptional repres 45.9 2.6E+02 0.0057 26.3 10.3 114 167-289 263-382 (385)
56 KOG0291 WD40-repeat-containing 45.2 4E+02 0.0086 28.1 23.4 70 48-129 147-220 (893)
57 PLN03215 ascorbic acid mannose 42.4 1E+02 0.0023 29.6 7.3 62 48-126 161-225 (373)
58 KOG1587 Cytoplasmic dynein int 42.1 3.9E+02 0.0085 27.3 11.7 150 57-239 306-473 (555)
59 KOG2106 Uncharacterized conser 41.5 3.8E+02 0.0082 26.8 17.7 90 103-234 214-303 (626)
60 KOG1034 Transcriptional repres 40.5 76 0.0016 29.7 5.8 60 58-127 321-382 (385)
61 KOG0646 WD40 repeat protein [G 40.0 3.7E+02 0.0081 26.4 12.1 79 106-185 225-308 (476)
62 KOG0649 WD40 repeat protein [G 38.9 2.8E+02 0.0062 25.0 8.8 34 151-188 60-93 (325)
63 PLN03215 ascorbic acid mannose 38.9 1.3E+02 0.0028 28.9 7.4 61 213-288 162-225 (373)
64 PRK14131 N-acetylneuraminic ac 38.9 3.5E+02 0.0077 25.8 11.4 18 58-75 132-149 (376)
65 TIGR03548 mutarot_permut cycli 38.5 3.3E+02 0.0071 25.3 10.7 17 275-291 217-233 (323)
66 PF03785 Peptidase_C25_C: Pept 36.8 72 0.0016 23.2 4.0 41 91-133 8-49 (81)
67 KOG1230 Protein containing rep 36.6 3.6E+02 0.0077 26.4 9.6 22 270-291 231-252 (521)
68 PRK05560 DNA gyrase subunit A; 36.2 5.8E+02 0.013 27.5 23.1 270 54-363 496-778 (805)
69 TIGR01063 gyrA DNA gyrase, A s 35.7 5.9E+02 0.013 27.4 24.7 268 54-363 494-775 (800)
70 KOG1240 Protein kinase contain 34.9 6.3E+02 0.014 28.4 12.1 122 155-291 1050-1182(1431)
71 PRK14131 N-acetylneuraminic ac 33.5 4.3E+02 0.0093 25.2 15.5 16 343-358 338-353 (376)
72 PRK05560 DNA gyrase subunit A; 33.4 6.4E+02 0.014 27.2 19.7 223 46-291 536-773 (805)
73 PF13418 Kelch_4: Galactose ox 32.6 41 0.00089 21.2 2.2 18 220-237 3-20 (49)
74 KOG4693 Uncharacterized conser 31.4 4.1E+02 0.009 24.3 8.9 65 110-184 80-148 (392)
75 PF10168 Nup88: Nuclear pore c 31.3 5E+02 0.011 27.5 10.9 126 223-356 35-178 (717)
76 KOG1240 Protein kinase contain 31.2 8.1E+02 0.018 27.7 12.4 76 48-130 1050-1130(1431)
77 KOG0282 mRNA splicing factor [ 30.6 5.5E+02 0.012 25.5 15.9 79 265-365 390-470 (503)
78 PF00167 FGF: Fibroblast growt 29.8 2.7E+02 0.0059 21.7 7.1 64 48-124 1-65 (122)
79 smart00442 FGF Acidic and basi 29.5 2.9E+02 0.0062 21.9 8.2 65 212-286 3-67 (126)
80 PF01436 NHL: NHL repeat; Int 28.5 1E+02 0.0022 17.1 3.0 18 58-75 5-22 (28)
81 PF00167 FGF: Fibroblast growt 27.9 2.9E+02 0.0063 21.5 8.0 65 213-287 2-66 (122)
82 KOG1275 PAB-dependent poly(A) 27.9 8.2E+02 0.018 26.7 15.3 185 31-247 154-351 (1118)
83 KOG1408 WD40 repeat protein [F 27.2 7.6E+02 0.017 26.1 12.3 102 106-237 138-248 (1080)
84 smart00442 FGF Acidic and basi 27.1 3.2E+02 0.0069 21.6 7.4 65 48-124 3-67 (126)
85 PHA02713 hypothetical protein; 26.9 2.4E+02 0.0052 28.8 7.6 15 224-238 346-360 (557)
86 TIGR01063 gyrA DNA gyrase, A s 26.7 8.3E+02 0.018 26.3 20.3 223 46-291 534-770 (800)
87 KOG0275 Conserved WD40 repeat- 26.2 5.5E+02 0.012 24.1 9.2 24 56-79 360-383 (508)
88 cd00058 FGF Acidic and basic f 23.9 3.6E+02 0.0079 21.2 6.8 59 52-123 3-62 (123)
89 PLN02772 guanylate kinase 23.8 1.7E+02 0.0037 28.4 5.5 21 270-290 75-95 (398)
90 cd00058 FGF Acidic and basic f 23.8 3.7E+02 0.0079 21.2 7.9 62 215-286 2-63 (123)
91 TIGR03300 assembly_YfgL outer 23.2 6.4E+02 0.014 23.8 13.5 56 221-287 321-376 (377)
92 KOG2111 Uncharacterized conser 23.2 6.3E+02 0.014 23.7 17.2 163 66-288 75-254 (346)
93 PF13938 DUF4213: Domain of un 23.0 1.3E+02 0.0028 22.0 3.6 24 43-66 8-31 (87)
94 TIGR03300 assembly_YfgL outer 22.9 6.5E+02 0.014 23.7 13.7 15 221-235 362-376 (377)
95 PLN02193 nitrile-specifier pro 22.8 7.5E+02 0.016 24.5 18.7 17 57-74 168-184 (470)
96 KOG2055 WD40 repeat protein [G 22.4 4.2E+02 0.0091 26.2 7.6 206 4-240 307-514 (514)
97 KOG0278 Serine/threonine kinas 22.3 6E+02 0.013 23.1 12.7 95 89-205 133-229 (334)
98 KOG0282 mRNA splicing factor [ 21.3 7.8E+02 0.017 24.5 9.2 34 157-191 436-469 (503)
99 KOG2445 Nuclear pore complex c 21.3 3.9E+02 0.0084 25.0 6.8 56 282-356 199-255 (361)
100 PF13938 DUF4213: Domain of un 21.3 1.3E+02 0.0028 22.0 3.3 23 98-120 9-31 (87)
101 PF07646 Kelch_2: Kelch motif; 20.9 1E+02 0.0023 19.4 2.5 17 164-184 4-20 (49)
102 PF13964 Kelch_6: Kelch motif 20.7 1.1E+02 0.0024 19.3 2.5 18 164-185 4-21 (50)
103 PF07312 DUF1459: Protein of u 20.3 67 0.0014 23.1 1.4 12 350-361 57-69 (84)
104 PLN02153 epithiospecifier prot 20.3 7.1E+02 0.015 23.2 18.4 16 275-290 308-323 (341)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.6e-50 Score=369.28 Aligned_cols=341 Identities=25% Similarity=0.402 Sum_probs=279.5
Q ss_pred cceecccCCcccccCCCC----CCcceeeccc--CCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCC------
Q 016725 17 PDIINERNGKRNLLGREV----NGTPLYCRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQ------ 84 (384)
Q Consensus 17 ~~~~~~g~~~~g~~g~~~----~~~P~~~~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~------ 84 (384)
..+|.||.|-.+++|+++ ...|++.+.. +...|++++||..|+++|+.||+||+||.|..|+||....
T Consensus 68 ~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~ 147 (476)
T COG5184 68 ASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQ 147 (476)
T ss_pred eeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccc
Confidence 578999999777776642 3678888776 6788999999999999999999999999999999998761
Q ss_pred --------CceeeecCEEecC----CCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCc----ccccccc
Q 016725 85 --------GTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND----VEPHPLL 148 (384)
Q Consensus 85 --------~~~~~~~p~~i~~----~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~----~~~~~i~ 148 (384)
+......|..++. ....++++++||++++++|+++|+||.||.+..+.++.+..... ..++++.
T Consensus 148 ~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~ 227 (476)
T COG5184 148 NNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLK 227 (476)
T ss_pred cccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeee
Confidence 2234566777776 23558999999999999999999999999999888888844433 3355555
Q ss_pred cccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeC
Q 016725 149 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQ 228 (384)
Q Consensus 149 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~ 228 (384)
.+ +..|+++++|..|.++|+. +| ++|.||+|..||||....+...++..+..+-. -..|+.|+||.+|++||++
T Consensus 228 v~--~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~-i~~i~~vacG~~h~~al~~ 301 (476)
T COG5184 228 VP--KKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPFA-IRNIKYVACGKDHSLALDE 301 (476)
T ss_pred cC--chheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChhh-hhhhhhcccCcceEEEEcC
Confidence 42 5679999999999999998 99 99999999999999998888777777654321 1237889999999999999
Q ss_pred CCCEEEEeCCCCCccCCCCC----CCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCC
Q 016725 229 DGRVCTWGWGRYGCLGHGNE----ECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQ 304 (384)
Q Consensus 229 ~g~vy~wG~n~~gqlg~~~~----~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~ 304 (384)
+|++|+||.|.++|||.+.. .....|+....+.+..|..++++..|+++|..+|.+|.||++.++|||.++
T Consensus 302 ~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~----- 376 (476)
T COG5184 302 DGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQE----- 376 (476)
T ss_pred CCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcc-----
Confidence 99999999999999999821 122345555556677899999999999999999999999999999999986
Q ss_pred CCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 305 GNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 305 ~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
..+.....|..+.. ..++.+++| |..|+++.+++|++|.||++++|+||+++ ....+..|+.|+
T Consensus 377 -~~~~~~~~~~~ls~----~~~~~~v~~-----gt~~~~~~t~~gsvy~wG~ge~gnlG~g~--~~~~~~~pt~i~ 440 (476)
T COG5184 377 -EITIDVSTPTKLSV----AIKLEQVAC-----GTHHNIARTDDGSVYSWGWGEHGNLGNGP--KEADVLVPTLIR 440 (476)
T ss_pred -cceeecCCcccccc----ccceEEEEe-----cCccceeeccCCceEEecCchhhhccCCc--hhhhcccccccc
Confidence 12344444444442 267999999 99999999999999999999999999997 456677787776
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.4e-40 Score=307.78 Aligned_cols=305 Identities=27% Similarity=0.427 Sum_probs=239.2
Q ss_pred CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCC--CCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCccc
Q 016725 57 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL--KNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLG 134 (384)
Q Consensus 57 ~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~--~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg 134 (384)
.|...++.-..||+||+|...|||.++.. .....|...+.. +...|++++||..|+++|++||.||+||.|..|+||
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de-~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNGMNELGLGNDE-TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred cchhhhhheeeeEEEecCcceeeccCCch-hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 35557888899999999999999999843 336888888876 567799999999999999999999999999999999
Q ss_pred CCCC--------------C--Cccccccccc---ccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCC
Q 016725 135 HHTE--------------P--NDVEPHPLLG---TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 195 (384)
Q Consensus 135 ~~~~--------------~--~~~~~~~i~~---~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 195 (384)
.... . ...+|..++. .....++++++||+++++++++ +| .||.||....+.++.+...
T Consensus 138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~--~G-~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTA--DG-RVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEcc--CC-cEEEecCcccccccccccc
Confidence 7761 1 1344555543 0113379999999999999999 99 9999999888888777444
Q ss_pred CCCC----CeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCC-CcEEEEEc
Q 016725 196 DEKH----PRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND-VKAIHVAT 270 (384)
Q Consensus 196 ~~~~----p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~-~~i~~i~~ 270 (384)
.... ++++.. ....|+++++|..|.++|+++|++|.||+|..||||....+....+..+..+.. ..|+.|+|
T Consensus 215 ~s~k~~~~~~p~~v---~~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vac 291 (476)
T COG5184 215 NSQKTSIQFTPLKV---PKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVAC 291 (476)
T ss_pred ccccceeeeeeeec---CchheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhccc
Confidence 3333 334433 145799999999999999999999999999999999998777666666654332 34789999
Q ss_pred CCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCC
Q 016725 271 GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350 (384)
Q Consensus 271 g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~ 350 (384)
|.+|++||+++|+||+||.|.+||||.++ . .........|.....+ ....|..|++ |..|+++|.++|.
T Consensus 292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~-~---~~~~a~~tk~~~~~~~--~~~~i~~is~-----ge~H~l~L~~~G~ 360 (476)
T COG5184 292 GKDHSLALDEDGEIYAWGVNIFGQLGAGS-D---GEIGALTTKPNYKQLL--SGVTICSISA-----GESHSLILRKDGT 360 (476)
T ss_pred CcceEEEEcCCCeEEEeccchhcccccCc-c---cccceeeccccccccC--CCceEEEEec-----CcceEEEEecCce
Confidence 99999999999999999999999999883 1 1111222333333333 4456889999 9999999999999
Q ss_pred EEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 351 LYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 351 l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
||+||.++++|||.... ....+..|+++.
T Consensus 361 l~a~Gr~~~~qlg~~~~-~~~~~~~~~~ls 389 (476)
T COG5184 361 LYAFGRGDRGQLGIQEE-ITIDVSTPTKLS 389 (476)
T ss_pred EEEecCCccccccCccc-ceeecCCccccc
Confidence 99999999999998842 244555566554
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.7e-40 Score=288.90 Aligned_cols=318 Identities=27% Similarity=0.428 Sum_probs=262.9
Q ss_pred CCCCCcceeecccCCCcEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC
Q 016725 32 REVNGTPLYCRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG 109 (384)
Q Consensus 32 ~~~~~~P~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G 109 (384)
.++...|.++..+.+.+|+-|+.| ..|+++|+-+|+.|.||.|..||||.++ ......|+.|+.+...+|++.+||
T Consensus 41 ~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD--~k~~e~Ptvi~gL~~~~iv~AA~G 118 (443)
T KOG1427|consen 41 EGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGD--MKQRERPTVISGLSKHKIVKAAAG 118 (443)
T ss_pred ccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccc--hhhccCCchhhhhhhhhHHHHhhc
Confidence 347889999999999999999876 5699999999999999999999999996 777888999999999999999999
Q ss_pred CCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcc
Q 016725 110 NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKL 189 (384)
Q Consensus 110 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gql 189 (384)
++|+++|+++|.||.||+|.+||||.++..+....++++. ....+|..|+||..|++.|.. .+ ++..+|.-.||||
T Consensus 119 rnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~--~~-si~t~glp~ygql 194 (443)
T KOG1427|consen 119 RNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSS--TE-SILTAGLPQYGQL 194 (443)
T ss_pred cCcEEEEecCCcEEEecccccccccccccccccccCCCcc-ccCccceeeccccceEEEeec--cc-ceeecCCcccccc
Confidence 9999999999999999999999999999887766666665 556679999999999999998 99 9999999999999
Q ss_pred cCCCCCC--------------CCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcE
Q 016725 190 GHGSRTD--------------EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPK 255 (384)
Q Consensus 190 g~~~~~~--------------~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~ 255 (384)
|+++... ...|..|.. .-.+.|++++||.+|++|++++++||.||-.-||.||.........|+
T Consensus 195 gh~td~~~~~~~~~~~~~~e~~pr~~~i~~--~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpR 272 (443)
T KOG1427|consen 195 GHGTDNEFNMKDSSVRLAYEAQPRPKAIAS--LDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPR 272 (443)
T ss_pred ccCcchhhccccccceeeeecCCCcccccc--ccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHH
Confidence 9996421 112333332 246789999999999999999999999999999999998888888888
Q ss_pred Eeeec--CCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeee
Q 016725 256 VVQAL--NDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLT 333 (384)
Q Consensus 256 ~i~~~--~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~ 333 (384)
.++.+ .+.---.+.||..+++.+.+-|.+|.||.+... -++...|..+..+ ...++..+-+
T Consensus 273 lik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~--------------ge~~mypkP~~dl--sgwnl~~~~~- 335 (443)
T KOG1427|consen 273 LIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN--------------GEDWMYPKPMMDL--SGWNLRWMDS- 335 (443)
T ss_pred HHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC--------------cccccCCCchhhc--CCccCCCcCc-
Confidence 77544 344456678999999999999999999987532 3556677777777 4455667777
Q ss_pred ccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 334 NSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 334 ~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
+..|. ++..|..+.+||...+|.++-++ +-|..-..|-+++
T Consensus 336 ----~~~h~-~v~ad~s~i~wg~~~~g~~lggp-~~Qkss~~Pk~v~ 376 (443)
T KOG1427|consen 336 ----GSMHH-FVGADSSCISWGHAQYGELLGGP-NGQKSSAAPKKVD 376 (443)
T ss_pred ----cceee-eecccccccccccccccccccCc-cccccccCccccc
Confidence 75554 56678889999998877665443 2466666676554
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3e-37 Score=268.70 Aligned_cols=306 Identities=26% Similarity=0.374 Sum_probs=257.7
Q ss_pred CcceecccCCcccccCCCCC---CcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecC
Q 016725 16 RPDIINERNGKRNLLGREVN---GTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSP 92 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~~---~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p 92 (384)
..+.|.||.|..||||..+. ..|+.|+-|+..+|++.+||++|+++||++|+||+||.|.+||||+++...+....|
T Consensus 76 egk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~ 155 (443)
T KOG1427|consen 76 EGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTP 155 (443)
T ss_pred ccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCC
Confidence 36788999999999999864 579999999999999999999999999999999999999999999998433333333
Q ss_pred EEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCc--------------ccccccccccCCCCeEE
Q 016725 93 QLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND--------------VEPHPLLGTLENIPVVQ 158 (384)
Q Consensus 93 ~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~--------------~~~~~i~~~~~~~~i~~ 158 (384)
.+.- ....|+.|+||..++++|+..+.+.++|...+||||.++.... ..|..|. ++.+..|++
T Consensus 156 ~~~~--~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~-~~dgvqiv~ 232 (443)
T KOG1427|consen 156 LPCV--VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIA-SLDGVQIVK 232 (443)
T ss_pred Cccc--cCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccc-cccceeeEE
Confidence 2222 2446999999999999999999999999999999998875421 2233333 377889999
Q ss_pred EEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCC
Q 016725 159 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 159 i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n 238 (384)
++||.+|++++.+ ++ +||+||..-||.||+...++...|+.++.|+..+.---.+.||+..++.+.+-|.||.||.+
T Consensus 233 ~acg~nhtvavd~--nk-rVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~ 309 (443)
T KOG1427|consen 233 VACGTNHTVAVDK--NK-RVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKI 309 (443)
T ss_pred EeccCcceeeecC--Cc-cEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecc
Confidence 9999999999998 99 99999999999999999999999999998876666667899999999999999999999987
Q ss_pred CCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCC-CCCCCCCCCCCCCcccccCeee
Q 016725 239 RYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASL-GHNAIADGQGNRHANVLTPQLV 317 (384)
Q Consensus 239 ~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~l-g~~~~~~~~~~~~~~~~~p~~v 317 (384)
.. +.+....|.++..+.+.++..+.++..|.+ +..|.....||...++.+ |.+. .......|.++
T Consensus 310 k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~-------~Qkss~~Pk~v 375 (443)
T KOG1427|consen 310 KN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPN-------GQKSSAAPKKV 375 (443)
T ss_pred cc------CcccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCcc-------ccccccCcccc
Confidence 64 344556788888888999999999977755 567778999999877654 5554 46777889999
Q ss_pred ecccccCccEEEEeeeccccccceEEEEeCC
Q 016725 318 TSLKQVNERVVQISLTNSIYWNAHTFALTES 348 (384)
Q Consensus 318 ~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~ 348 (384)
+.+ ....|.+|++ |..|+++|.++
T Consensus 376 ~~l--~~i~v~~Vam-----GysHs~vivd~ 399 (443)
T KOG1427|consen 376 DML--EGIHVMGVAM-----GYSHSMVIVDR 399 (443)
T ss_pred chh--cceeccceee-----ccceEEEEEcc
Confidence 888 7889999999 99999999754
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=230.87 Aligned_cols=275 Identities=24% Similarity=0.339 Sum_probs=215.0
Q ss_pred EEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCC--CCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCC
Q 016725 60 MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK--NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 137 (384)
Q Consensus 60 ~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~--~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 137 (384)
.+++.-.+||+||.|...-||.|+ ......|..+..++ +.-+.+|+.+..|+++|++.|+||+||.+..|+||.++
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign--~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGN--GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccC--CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc
Confidence 345566899999999999999997 56666777776553 66688899999999999999999999999999999999
Q ss_pred CCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCC-CCCCCeEEeecccCCC-CcEE
Q 016725 138 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-DEKHPRLIEQFQLLNL-QPVV 215 (384)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~-~~~~p~~i~~~~~~~~-~i~~ 215 (384)
......|++++. +.+.+|.+|++...|+++|++ .| .||.||.|.+.|||..+.. ....|.+|........ .|+.
T Consensus 214 eq~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~--~g-~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIg 289 (1267)
T KOG0783|consen 214 EQYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTK--FG-SVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIG 289 (1267)
T ss_pred cccccccccccc-ccccceEEEEeecceeEEEee--cc-eEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhh
Confidence 988999999998 888899999999999999999 99 9999999999999987654 4556777765433343 6899
Q ss_pred EEcCCcceEEEeCCCCEEEEeCCCCCccCCCC-CCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCC
Q 016725 216 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 294 (384)
Q Consensus 216 i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~-~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~ 294 (384)
+++|..|+++.++. .||+||.|. ||||..+ ......|+.+. .....|..|.|....+++++.++.+|++-+.....
T Consensus 290 vaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 290 VAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred hhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 99999999999877 599999995 9999987 55566787663 34568999999999999999999999988644322
Q ss_pred CCCCCCCCCCCCCCcccccCeeeeccc--ccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCC
Q 016725 295 LGHNAIADGQGNRHANVLTPQLVTSLK--QVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 358 (384)
Q Consensus 295 lg~~~~~~~~~~~~~~~~~p~~v~~~~--~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~ 358 (384)
+-.. .....-..|..-+ -....+.+..+ .....++||+-|+||.|-.++
T Consensus 367 ~~~n----------~~~lks~~V~gg~l~~~~~~~~k~~a-----~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 367 LPFN----------VDFLKSLKVTGGPLSLTRFNVRKLLA-----SENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred cCcc----------hhccceeEEecCccchhhhhhhhcch-----hhhheeeeccCCeEEEEecCC
Confidence 2111 0111111121110 01123445444 566788999999999998754
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.3e-25 Score=218.17 Aligned_cols=301 Identities=20% Similarity=0.275 Sum_probs=224.0
Q ss_pred cCcceecccCCcccccCCCC---CCcceeecccC--CCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceee
Q 016725 15 LRPDIINERNGKRNLLGREV---NGTPLYCRSLQ--GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLV 89 (384)
Q Consensus 15 ~~~~~~~~g~~~~g~~g~~~---~~~P~~~~~~~--~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~ 89 (384)
+..+||.||.|....||.++ ...|.++..+. +.-+.+|..+..|+++|++.|+||++|.+.-|+||.|+ ....
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd--eq~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD--EQYN 217 (1267)
T ss_pred CccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc--cccc
Confidence 45899999999999888754 56678876553 56678899999999999999999999999999999996 7888
Q ss_pred ecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCC------cccccccccccCCCCeEEEEEeC
Q 016725 90 TSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN------DVEPHPLLGTLENIPVVQIAAGY 163 (384)
Q Consensus 90 ~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~------~~~~~~i~~~~~~~~i~~i~~g~ 163 (384)
..|.+++.+.+.++.+|+....|+++||++|-||+||.|..+|||..+... +.++.++.. ++ .|+-+++|.
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg-~~--~iIgvaAg~ 294 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKG-FK--QIIGVAAGK 294 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcc-hh--hhhhhhccc
Confidence 899999999999999999999999999999999999999999999876542 233444333 22 589999999
Q ss_pred CceeEEEeeCCCCEEEEEecCCCCcccCCCCC-CCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCc
Q 016725 164 CYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-DEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 242 (384)
Q Consensus 164 ~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~-~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gq 242 (384)
.|+++-+ +- .||+||.| .||||..+.. ....|+.+.. ....+..++|...-++++++++.+|++-+-..-.
T Consensus 295 ~hsVawt---~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 295 SHSVAWT---DT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred ceeeeee---cc-eEEEeccc-CceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 9999999 55 89999998 4999987663 3556766644 5668899999999999999999999987533222
Q ss_pred cCCCCCCCccCcEEeee----cCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeee
Q 016725 243 LGHGNEECESVPKVVQA----LNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVT 318 (384)
Q Consensus 243 lg~~~~~~~~~p~~i~~----~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~ 318 (384)
+-.+... .+-..+.. +.-..+.+..+.....+++|+-|+||.|-.+... ...+...|..+-
T Consensus 367 ~~~n~~~--lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-------------~~~c~ftp~r~~ 431 (1267)
T KOG0783|consen 367 LPFNVDF--LKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-------------RTSCKFTPLRIF 431 (1267)
T ss_pred cCcchhc--cceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-------------eeeeecccceee
Confidence 2211100 00011110 0112355666777888999999999999975421 133334444332
Q ss_pred cccccCccEEEEeeeccccccceEEEEeCCCCEEEEeC
Q 016725 319 SLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 356 (384)
Q Consensus 319 ~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~ 356 (384)
. |.+|+- -.+..+++|+|| .|--|.
T Consensus 432 ~-------isdIa~-----~~N~~~~~t~dG-c~~Rg~ 456 (1267)
T KOG0783|consen 432 E-------ISDIAW-----TANSLILCTRDG-CWKRGL 456 (1267)
T ss_pred e-------hhhhhh-----ccceEEEEecCc-ceehhh
Confidence 2 335544 456788889999 443343
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-21 Score=196.33 Aligned_cols=271 Identities=23% Similarity=0.359 Sum_probs=185.5
Q ss_pred CCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEE
Q 016725 46 GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 125 (384)
Q Consensus 46 ~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~ 125 (384)
.++|+.+.+...---++.+||++|..|... -...-.-..+..+++.-|.+++.|..|.++++.+|+||+|
T Consensus 568 ~rKIv~v~~s~~VY~~vSenGkifM~G~~t----------m~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~ 637 (3738)
T KOG1428|consen 568 RRKIVHVCASGHVYGYVSENGKIFMGGLHT----------MRVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTW 637 (3738)
T ss_pred cceeEEEeeeeEEEEEEccCCeEEeeccee----------EEecchHHHhhccccceeehhhccccceeEEEeCCeEEEE
Confidence 346777655444445688999999998743 1111223455667788899999999999999999999999
Q ss_pred EcCCCCcccCCCCCCcc---------ccccccc----ccCCCCeEEEEEeCCceeEEEe----eCCCCEEEEEecCCCCc
Q 016725 126 SWGNDARLGHHTEPNDV---------EPHPLLG----TLENIPVVQIAAGYCYLLALAC----QPSGMAVYSVGCGLGGK 188 (384)
Q Consensus 126 G~n~~gqlg~~~~~~~~---------~~~~i~~----~~~~~~i~~i~~g~~~~~~l~~----~~~G~~vy~~G~n~~gq 188 (384)
|.|+.+|+|.-...... +....+. =+.+.+-+...||.....-+.. -..| .+-.+|..+.+.
T Consensus 638 GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G-~mC~CG~GES~C 716 (3738)
T KOG1428|consen 638 GLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKG-TMCHCGVGESTC 716 (3738)
T ss_pred ecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCC-cccccCCCcccc
Confidence 99999999964332211 1111110 0122334455555433322221 1144 666677666555
Q ss_pred ccCCCC---------------------------CCCCCCeEEeec-ccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCC
Q 016725 189 LGHGSR---------------------------TDEKHPRLIEQF-QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRY 240 (384)
Q Consensus 189 lg~~~~---------------------------~~~~~p~~i~~~-~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~ 240 (384)
+-.+-. .....|..+..- ..-+.++.+++||++|++.|.+|++||.+|.|.+
T Consensus 717 ~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~H 796 (3738)
T KOG1428|consen 717 LRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCH 796 (3738)
T ss_pred eeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcc
Confidence 432210 111123333221 1245678999999999999999999999999999
Q ss_pred CccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecc
Q 016725 241 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSL 320 (384)
Q Consensus 241 gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~ 320 (384)
||||.++......|+++..+.+..+++|++|.+|++++..||.||.||.-..|||+.+.- +.....-.|.+++.+
T Consensus 797 GQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~-----e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 797 GQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG-----EKAGWNAIPEKVSGF 871 (3738)
T ss_pred cccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccc-----cccccccCCCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999998851 123333455555544
Q ss_pred -cccCccEEEEee
Q 016725 321 -KQVNERVVQISL 332 (384)
Q Consensus 321 -~~~~~~i~~i~~ 332 (384)
+..+...-.|.+
T Consensus 872 G~~f~~~A~WIGA 884 (3738)
T KOG1428|consen 872 GPGFNAFAGWIGA 884 (3738)
T ss_pred Cccccccceeecc
Confidence 234445555555
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-20 Score=189.40 Aligned_cols=322 Identities=22% Similarity=0.294 Sum_probs=212.0
Q ss_pred CcceecccCCccc-ccCCCCCCcceeecccCCCcEEEEEeCCCeeEEEEc--CCCEEEEecCCCCCcccCCCCceeeecC
Q 016725 16 RPDIINERNGKRN-LLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISD--AGQVYAFGKDSFGEAEYGVQGTKLVTSP 92 (384)
Q Consensus 16 ~~~~~~~g~~~~g-~~g~~~~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~--~g~vy~~G~n~~gqlG~~~~~~~~~~~p 92 (384)
++++|..|++... ....++.+.-..+. + +|++|+.|-+...++.- +|-++.-|... +... -
T Consensus 497 sGKvYYaGn~t~~Gl~e~G~nWmEL~l~--~--~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k-----------~~~~-~ 560 (3738)
T KOG1428|consen 497 SGKVYYAGNGTRFGLFETGNNWMELCLP--E--PIVQISVGIDTIMFRSGAGHGWIASVDDKK-----------RNGR-L 560 (3738)
T ss_pred CccEEEecCccEEeEEccCCceEEecCC--C--ceEEEEeccchhheeeccCcceEEeccCcc-----------cccc-h
Confidence 5778888887653 32333444333332 3 89999999888777764 45566555322 1111 1
Q ss_pred EEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEee
Q 016725 93 QLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQ 172 (384)
Q Consensus 93 ~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~ 172 (384)
..+...+..+|+.+.+...---.+.+||++|..|.... ........+. .+++.-|.+++.|..|.+++++
T Consensus 561 Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm--------~~n~SSqmln-~L~~~~isslAlGKsH~~av~r- 630 (3738)
T KOG1428|consen 561 RRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM--------RVNVSSQMLN-GLDNVMISSLALGKSHGVAVTR- 630 (3738)
T ss_pred hhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE--------EecchHHHhh-ccccceeehhhccccceeEEEe-
Confidence 12222234567776543333346899999998775431 1112233333 3788889999999999999999
Q ss_pred CCCCEEEEEecCCCCcccCCCCCCCCCCeEEee-ccc-----------CCCCcEEEEcCCcce--EEE----eCCCCEEE
Q 016725 173 PSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ-FQL-----------LNLQPVVVAAGAWHA--AVV----GQDGRVCT 234 (384)
Q Consensus 173 ~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~-~~~-----------~~~~i~~i~~g~~~~--~~l----t~~g~vy~ 234 (384)
|| .||.||.|..+|.|+-............. .+. .+..-+-..||.-.. ++- .-.|.+.-
T Consensus 631 -NG-~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~ 708 (3738)
T KOG1428|consen 631 -NG-HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCH 708 (3738)
T ss_pred -CC-eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccc
Confidence 99 99999999999999875433221111110 000 000111111221110 000 12556666
Q ss_pred EeCCCCCccCCC--------CC-------------------CCccCcEEe---eecCCCcEEEEEcCCceEEEEecCCCE
Q 016725 235 WGWGRYGCLGHG--------NE-------------------ECESVPKVV---QALNDVKAIHVATGDYTTFVVSEDGDV 284 (384)
Q Consensus 235 wG~n~~gqlg~~--------~~-------------------~~~~~p~~i---~~~~~~~i~~i~~g~~~~~~lt~~g~v 284 (384)
+|.+..+++-.+ .+ ....-|..+ +.+-+.++.+|+||..|+++|.+|++|
T Consensus 709 CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~V 788 (3738)
T KOG1428|consen 709 CGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRV 788 (3738)
T ss_pred cCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcE
Confidence 666554443221 10 001122222 123456899999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCc
Q 016725 285 YSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 364 (384)
Q Consensus 285 y~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~ 364 (384)
|.||+|-|||||.++ ......|+.|..+ .+..+++|++ |.+|++++..||.||++|+=..|||+.
T Consensus 789 fTFG~~~HGQLG~GD--------t~Sk~~Pq~V~~~--~~t~~vQVaA-----GSNHT~l~~~DGsVFTFGaF~KGQL~R 853 (3738)
T KOG1428|consen 789 FTFGSNCHGQLGVGD--------TLSKNTPQQVILP--SDTVIVQVAA-----GSNHTILRANDGSVFTFGAFGKGQLAR 853 (3738)
T ss_pred EEecCCcccccCcCc--------cccCCCcceEEcC--CCCceEEEec-----CCCceEEEecCCcEEEeccccCccccC
Confidence 999999999999998 7788899998877 6678999999 999999999999999999999999999
Q ss_pred cccCCcccCCCceEEe
Q 016725 365 ELVNNQTERGNPERVD 380 (384)
Q Consensus 365 ~~~~~~~~~~~p~~i~ 380 (384)
+.-+...|...|.+++
T Consensus 854 P~~e~~~WNA~Pe~v~ 869 (3738)
T KOG1428|consen 854 PAGEKAGWNAIPEKVS 869 (3738)
T ss_pred ccccccccccCCCcCC
Confidence 9888888888888764
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.28 E-value=7.4e-12 Score=84.05 Aligned_cols=50 Identities=34% Similarity=0.519 Sum_probs=46.1
Q ss_pred CCCEEEEecCCCCCcc-cCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEE
Q 016725 65 AGQVYAFGKDSFGEAE-YGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 116 (384)
Q Consensus 65 ~g~vy~~G~n~~gqlG-~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~l 116 (384)
||+||+||.|.+|||| .++ ......|.+++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~--~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGD--NKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSS--SSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCC--CCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 554 7888999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.18 E-value=2.7e-11 Score=81.30 Aligned_cols=50 Identities=42% Similarity=0.728 Sum_probs=47.3
Q ss_pred CCCEEEEeCCCCCccC-CCCCCCccCcEEeeecCCCcEEEEEcCCceEEEE
Q 016725 229 DGRVCTWGWGRYGCLG-HGNEECESVPKVVQALNDVKAIHVATGDYTTFVV 278 (384)
Q Consensus 229 ~g~vy~wG~n~~gqlg-~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l 278 (384)
||+||+||.|.++||| .........|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7788889999999999999999999999999986
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.08 E-value=2e-10 Score=67.30 Aligned_cols=30 Identities=37% Similarity=0.590 Sum_probs=25.9
Q ss_pred EEEEEeCCCeEEEEEcCCCEEEEEcCCCCc
Q 016725 103 VVQAAIGNFFTAVLSREGRVYTFSWGNDAR 132 (384)
Q Consensus 103 i~~I~~G~~~~~~lt~~G~vy~~G~n~~gq 132 (384)
|++|+||..|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.05 E-value=2.7e-10 Score=66.80 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=26.0
Q ss_pred EEEEEeCCCeeEEEEcCCCEEEEecCCCCC
Q 016725 49 IIQAAAGAGRTMLISDAGQVYAFGKDSFGE 78 (384)
Q Consensus 49 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gq 78 (384)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-11 Score=120.52 Aligned_cols=146 Identities=29% Similarity=0.418 Sum_probs=122.1
Q ss_pred cceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEE
Q 016725 37 TPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 116 (384)
Q Consensus 37 ~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~l 116 (384)
.|+++..+.-+++++++||..|+++++..|++|+||.|.+||+|.+. ......|.+++.+++.+..+|++|..|++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~--~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~l 81 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRAL--YFPDAKPEPVESLKGVPLAQVSAGEAHSFAL 81 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhc--cCCCCCCccchhhcCCcHHHHhcCCCcchhh
Confidence 45666666667899999999999999999999999999999999984 3333339999999999999999999998776
Q ss_pred Ec-------CCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCC
Q 016725 117 SR-------EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGG 187 (384)
Q Consensus 117 t~-------~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~g 187 (384)
.. +|+++.+|....+|+|.....+...|..+.. .-+..+.+++|+..|+.++.. .-| ++|.+|.+..|
T Consensus 82 S~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e-~i~~~~t~ia~~~~ht~a~v~-~l~-qsf~~~~~~sG 156 (850)
T KOG0941|consen 82 SSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLE-LIGSRVTRIACVRGHTLAIVP-RLG-QSFSFGKGASG 156 (850)
T ss_pred hhchhhcchhccccccCCcccccccccccccccccHHHHH-HHhhhhHHHHHHHHHHHhhhh-hhc-ceeecccCCCC
Confidence 55 9999999999999999977777777766655 556679999999988887775 245 99999998776
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-10 Score=115.48 Aligned_cols=135 Identities=31% Similarity=0.573 Sum_probs=118.0
Q ss_pred CCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEec-------CCC
Q 016725 211 LQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSE-------DGD 283 (384)
Q Consensus 211 ~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~-------~g~ 283 (384)
.++.+++||++|+++++..|++++||.|.++|+|.+.......|..++++.+.+...|++|..|+++++. +|.
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 3688999999999999999999999999999999996444455999999999999999999999888776 999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEe-CCCCEEEEeCCCCC
Q 016725 284 VYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALT-ESGKLYAFGAGDKG 360 (384)
Q Consensus 284 vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt-~~g~l~~~G~n~~g 360 (384)
++.+|....+|+|..- ......|..+... .+..+.+|+| |..|+++.. .-|+.|..|.+..|
T Consensus 94 ~fs~Ga~~~~q~~h~~--------~~~~~~~~~v~e~--i~~~~t~ia~-----~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGHSL--------TENEVLPLLVLEL--IGSRVTRIAC-----VRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ccccCCcccccccccc--------cccccccHHHHHH--HhhhhHHHHH-----HHHHHHhhhhhhcceeecccCCCC
Confidence 9999999999999954 5566677777766 7889999999 988988885 56899999998887
No 15
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.0049 Score=64.52 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=101.9
Q ss_pred CcCcceecccCCcccccCCCC-------CCcceeec-------ccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCc
Q 016725 14 ILRPDIINERNGKRNLLGREV-------NGTPLYCR-------SLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEA 79 (384)
Q Consensus 14 ~~~~~~~~~g~~~~g~~g~~~-------~~~P~~~~-------~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gql 79 (384)
++-+.-+.|-.|.-|..|.+. ...|+.+- ..+..+++.|.+-.+-.++|..+|++|.|-+...--|
T Consensus 327 i~~Gah~d~~RGapgd~~~ehldkknaktdaPVk~gedlqwwpDddan~~I~I~A~s~el~AlhrkGelYqWaWdESEgl 406 (3015)
T KOG0943|consen 327 ILDGAHFDNERGAPGDEGEEHLDKKNAKTDAPVKLGEDLQWWPDDDANKFICIGALSSELLALHRKGELYQWAWDESEGL 406 (3015)
T ss_pred eccccccccccCCCCCCCCcccccccCccCCCcccccccccCcCCCCCeeEEeehhHHHHHHHhhCCceeeeecccccCC
Confidence 444555556666665555432 12355441 2344567777777778899999999999998764332
Q ss_pred ccCCCCceeeecCE-EecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCc--ccccccccccCCCCe
Q 016725 80 EYGVQGTKLVTSPQ-LVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND--VEPHPLLGTLENIPV 156 (384)
Q Consensus 80 G~~~~~~~~~~~p~-~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~--~~~~~i~~~~~~~~i 156 (384)
-....-.....-|. -...+.+.+|+.+++..-..-++|++|+|.+|=. ++|.+-.... ...+.+ ...+..+
T Consensus 407 ddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWlD----EcgagV~fkLa~ea~Tki--eed~~ma 480 (3015)
T KOG0943|consen 407 DDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWLD----ECGAGVAFKLAHEAQTKI--EEDGEMA 480 (3015)
T ss_pred CChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHHh----hhhhhhhhhhhhhhhhhh--hhhhHHH
Confidence 21110011111121 1124457899999999999999999999998833 2232222211 112222 2455667
Q ss_pred EEEEEeCCceeEEEeeCCCCEEEEEecCCCCc
Q 016725 157 VQIAAGYCYLLALACQPSGMAVYSVGCGLGGK 188 (384)
Q Consensus 157 ~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq 188 (384)
++-.|...|.++... +. .+|.||--.+.|
T Consensus 481 Vqd~~~adhlaAf~~--dn-iihWcGiVPf~e 509 (3015)
T KOG0943|consen 481 VQDHCCADHLAAFLE--DN-IIHWCGIVPFSE 509 (3015)
T ss_pred HHHHHHHHHHHHHhh--hc-eeeEEeeeeehh
Confidence 777888888888887 88 999999765544
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.39 E-value=3.1 Score=41.22 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=68.4
Q ss_pred eCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCc-ccccccccccCCCCeEEEEEeC-CceeEEEeeCCCCEEEEEecCC
Q 016725 108 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND-VEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGL 185 (384)
Q Consensus 108 ~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~-~~~~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~ 185 (384)
.|.....+|..+|++|. +-|....... ...+.+.. ..++.+|++|. .-..+++. ||.-+|--|-..
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~---~t~L~qISagPtg~VwAvt~--nG~vf~R~GVsR 257 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICP---YTDLSQISAGPTGVVWAVTE--NGAVFYREGVSR 257 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCC---CCccceEeecCcceEEEEee--CCcEEEEecccc
Confidence 34556677888888883 1222222221 11222221 22488999999 77889998 994556667776
Q ss_pred CCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEE
Q 016725 186 GGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW 235 (384)
Q Consensus 186 ~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 235 (384)
+.+.|..-. ....|.... .++.|+.|....-+|+.+|.+|.=
T Consensus 258 qNp~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 258 QNPEGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred cCCCCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEEE
Confidence 666665433 333333222 278999999999999999999863
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.77 E-value=7.9 Score=38.55 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=51.9
Q ss_pred CcEEEEcCC-cceEEEeCCCCEE-EEeCCCCCccCCCCCCCccCcEEeeecCCCc-EEEEEcCCceEEEEecCCCEEEE
Q 016725 212 QPVVVAAGA-WHAAVVGQDGRVC-TWGWGRYGCLGHGNEECESVPKVVQALNDVK-AIHVATGDYTTFVVSEDGDVYSF 287 (384)
Q Consensus 212 ~i~~i~~g~-~~~~~lt~~g~vy-~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~-i~~i~~g~~~~~~lt~~g~vy~w 287 (384)
.+..|++|. .-..+++.+|.|+ -.|-.++.+.|.. .+.|.++.+.. ++.|+.|....-+|+++|++|+=
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gds-------WkdI~tP~~a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDS-------WKDIVTPRQALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCch-------hhhccCcccccceEEEEeccceEEEEecCCcEEEE
Confidence 578999999 5678999999976 5677776666653 22333333333 89999999999999999999974
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.70 E-value=4.9 Score=35.84 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=57.6
Q ss_pred CeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC--cceEEEeCCCCE
Q 016725 155 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRV 232 (384)
Q Consensus 155 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v 232 (384)
.|..|..-..--...+-..|| .+..|-... ...++... .+.+|..|.-.. .+-+.-+++|++
T Consensus 85 NVtaVgF~~dgrWMyTgseDg-t~kIWdlR~-----------~~~qR~~~----~~spVn~vvlhpnQteLis~dqsg~i 148 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDG-TVKIWDLRS-----------LSCQRNYQ----HNSPVNTVVLHPNQTELISGDQSGNI 148 (311)
T ss_pred ceEEEEEeecCeEEEecCCCc-eEEEEeccC-----------cccchhcc----CCCCcceEEecCCcceEEeecCCCcE
Confidence 344444433333444444477 788885432 11111111 122344444443 356677899999
Q ss_pred EEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCc--eEEEEecCCCEEEEeCC
Q 016725 233 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 233 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~n 290 (384)
++|-.... .-.....|... ..|.++....+ -.++..+.|+.|+|-.-
T Consensus 149 rvWDl~~~------~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 149 RVWDLGEN------SCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred EEEEccCC------ccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 99975432 12223333322 34555555544 45567888999999853
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.46 E-value=1 Score=50.03 Aligned_cols=245 Identities=16% Similarity=0.208 Sum_probs=123.2
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEe--------------cCC-C--CCcEEEE---E
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV--------------ESL-K--NIFVVQA---A 107 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i--------------~~~-~--~~~i~~I---~ 107 (384)
...+|.....+.++.+.+|+||.--..... -.. -.....|... +.+ . +..+..+ .
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~~--~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DNE--PKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CCC--cceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 466777777788899999999975433321 111 2223333322 111 0 1122222 4
Q ss_pred eCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccc-cccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCC
Q 016725 108 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP-HPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLG 186 (384)
Q Consensus 108 ~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~-~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~ 186 (384)
.|..|++.|.+++.=|.=|||-...|=...+.--..+ .+- .-.-+-.+..-.++|. +| +|..|=....
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~-------~~~~ldl~r~G~v~L~---~G-~i~~wD~ttq 633 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPA-------PHEILDLGRAGLVGLQ---DG-KIQYWDSTTQ 633 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCC-------hHHhhccccccceeec---cc-eEeeecCcch
Confidence 5667777777777777777775433332222111111 000 0112335677778887 88 9999965432
Q ss_pred C----------cc--cCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCc
Q 016725 187 G----------KL--GHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 254 (384)
Q Consensus 187 g----------ql--g~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p 254 (384)
+ || |.........--++..+. ....--.|+-|.+|.++++.-..-+..|
T Consensus 634 ~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~-i~~~~~~~~~g~~~~~a~~~~r~~~e~G------------------ 694 (1774)
T PF11725_consen 634 CWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLS-INQEHPSIAHGDNNVFALPQRRNKVELG------------------ 694 (1774)
T ss_pred hhhhccCcCHHHHhccccCCceEecCCceeeee-cccCCCccccCCCcccccccccCCCCCC------------------
Confidence 1 11 110111111111111100 0111123444444555444322222211
Q ss_pred EEeeecCCCcEEEEE-cCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeee
Q 016725 255 KVVQALNDVKAIHVA-TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLT 333 (384)
Q Consensus 255 ~~i~~~~~~~i~~i~-~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~ 333 (384)
..|+.+.+..|..++ .+.+++++|++.|+|-..-. ...|+.++.. ....+|..|+.
T Consensus 695 ~~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k---------------------~g~p~~l~~~-gl~G~ik~l~l- 751 (1774)
T PF11725_consen 695 DALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK---------------------PGRPVPLSRP-GLSGEIKDLAL- 751 (1774)
T ss_pred ccccCCCcCcceeEEEEcCCceEEeccCCccccccC---------------------CCCCccCCCC-CCCcchhheee-
Confidence 134445555565555 46688999999999875331 1125554433 24677888887
Q ss_pred ccccccc-eEEEEeCCCCEEEE
Q 016725 334 NSIYWNA-HTFALTESGKLYAF 354 (384)
Q Consensus 334 ~~~~G~~-~~~~lt~~g~l~~~ 354 (384)
=.. .-++++++|+||.-
T Consensus 752 ----D~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 752 ----DEKQNLYALTSTGELFRL 769 (1774)
T ss_pred ----ccccceeEecCCCceeec
Confidence 544 67889999999973
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.44 E-value=5.4 Score=35.56 Aligned_cols=169 Identities=16% Similarity=0.224 Sum_probs=84.5
Q ss_pred CCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCC-------------------CCCCCeEEeecc--cCCC
Q 016725 153 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-------------------DEKHPRLIEQFQ--LLNL 211 (384)
Q Consensus 153 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~-------------------~~~~p~~i~~~~--~~~~ 211 (384)
+.++.-+++|+.|++-+=.-..| ..+.-=.-..+|+..-... ....|.++..++ ..++
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred CCceEEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCce
Confidence 35688889999998865543344 4333222222332211100 011122222222 2333
Q ss_pred CcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCC
Q 016725 212 QPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 212 ~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~ 291 (384)
..+.+.|-..-.+-=.+||.+-+|-... + ..++.++.....+-+-+.....+-+.-+++|.|++|--..
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~---~--------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRS---L--------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccC---c--------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 3344444444555556788888886543 1 1122222222222334555666777778999999997543
Q ss_pred CCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCC
Q 016725 292 SASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAG 357 (384)
Q Consensus 292 ~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n 357 (384)
+. -.....|. ....|..+...+ -+....+....|++|+|-.=
T Consensus 156 ~~--------------c~~~liPe-------~~~~i~sl~v~~---dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 156 NS--------------CTHELIPE-------DDTSIQSLTVMP---DGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred Cc--------------cccccCCC-------CCcceeeEEEcC---CCcEEEEecCCccEEEEEcc
Confidence 21 11112222 123455555411 34556677889999999763
No 21
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.55 E-value=11 Score=36.55 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=87.0
Q ss_pred cEEEEEeCCC-eEEE-EEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEE
Q 016725 102 FVVQAAIGNF-FTAV-LSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 179 (384)
Q Consensus 102 ~i~~I~~G~~-~~~~-lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 179 (384)
++..+++... +.++ =+..|++|.|--+..--|..- ... .+ .|.++....+-+++++-.+|| .|.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-------~aH----YQ--~ITcL~fs~dgs~iiTgskDg-~V~ 148 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-------SAH----YQ--SITCLKFSDDGSHIITGSKDG-AVL 148 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-------Hhh----cc--ceeEEEEeCCCcEEEecCCCc-cEE
Confidence 4666655443 3333 348899999965542211100 001 11 277888888888999988899 999
Q ss_pred EEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcc--eEE--EeCCCCEEEEeCCCCCccCCCCCCCccCcE
Q 016725 180 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH--AAV--VGQDGRVCTWGWGRYGCLGHGNEECESVPK 255 (384)
Q Consensus 180 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~--~~~--lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~ 255 (384)
+|=.-..- +......|.++..+..-...|+++.+|..- +.+ ...|..+.+|-...- ..-.
T Consensus 149 vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-----------~LLl 212 (476)
T KOG0646|consen 149 VWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-----------VLLL 212 (476)
T ss_pred EEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----------eeeE
Confidence 99643211 111122455555555566678888777663 222 235555666643221 0011
Q ss_pred EeeecCCCcEEEEEcCCceEEEEecCCCEEEEe
Q 016725 256 VVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 288 (384)
Q Consensus 256 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG 288 (384)
.+..+...+.+-+.....++++=+++|.+|..-
T Consensus 213 ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 213 TITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 111122223445556677777778888888654
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=0.026 Score=59.41 Aligned_cols=133 Identities=17% Similarity=0.087 Sum_probs=88.2
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCC--CCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCE
Q 016725 100 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTE--PNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 177 (384)
Q Consensus 100 ~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~--~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~ 177 (384)
..+++.|.+-.+..++|..+|++|.|-|...--+-..-. .+..-|..-...+.+.+|+.+++..-...++++ +| +
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~--ng-h 449 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE--NG-H 449 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec--CC-c
Confidence 346777777777788999999999999987433322111 222333332223678899999999988889998 99 9
Q ss_pred EEEEecCCCCcccCCCCCCC--CCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCc
Q 016725 178 VYSVGCGLGGKLGHGSRTDE--KHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 242 (384)
Q Consensus 178 vy~~G~n~~gqlg~~~~~~~--~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gq 242 (384)
|.+|=+- .|.+-.... ...+.+.. ..+.+++..|...|..+..+|+.+|-||.-.+.+
T Consensus 450 lasWlDE----cgagV~fkLa~ea~Tkiee---d~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 450 LASWLDE----CGAGVAFKLAHEAQTKIEE---DGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hhhHHhh----hhhhhhhhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 9999432 121111111 11222222 4567788889999999999999999999644433
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.41 E-value=3 Score=36.85 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=43.4
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEe-cC---------CCCCcEEEEEeC-CCeEEEE
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV-ES---------LKNIFVVQAAIG-NFFTAVL 116 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i-~~---------~~~~~i~~I~~G-~~~~~~l 116 (384)
+++.+.|...+.++||++|.+|+|--... .....|..+ +. .....|+.+.-. ...-++.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~----------k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKG----------KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCC----------eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 78889999999999999999999965442 222222111 11 123456555443 3345666
Q ss_pred EcCCCEEEE
Q 016725 117 SREGRVYTF 125 (384)
Q Consensus 117 t~~G~vy~~ 125 (384)
.++|+.|+|
T Consensus 84 lsng~~y~y 92 (219)
T PF07569_consen 84 LSNGDSYSY 92 (219)
T ss_pred EeCCCEEEe
Confidence 777888865
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.53 E-value=4.2 Score=35.93 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCceEEEEecCCCEEEEeCCC
Q 016725 262 DVKAIHVATGDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 262 ~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~ 291 (384)
+.+++.+.+...+-+++|++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 447888999999999999999999998543
No 25
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.58 E-value=26 Score=31.27 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCc-ccCCCCCCccccccc
Q 016725 100 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR-LGHHTEPNDVEPHPL 147 (384)
Q Consensus 100 ~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gq-lg~~~~~~~~~~~~i 147 (384)
+.+|-.++.-..|. .-..||.||+|-|+..-+ ++.-.--....|.+.
T Consensus 62 dgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 45677777765554 345579999999998655 443333333444444
No 26
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=1.1e+02 Score=33.96 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=90.2
Q ss_pred eEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCC
Q 016725 59 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTE 138 (384)
Q Consensus 59 ~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 138 (384)
-+.+|.|++||.|-.++.+++---+.-......=.++..-.+.-+-. =.|.+++...-+++..|-...-..+....
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcccc
Confidence 45689999999999988665433221011111111111111211111 24888998888999888765322221111
Q ss_pred CCcccccccccccCCCCeEEEEEeCCceeEEE-eeCCCCEEEEE----ecCCCCcccCCCC-----CCCCCCeEEeeccc
Q 016725 139 PNDVEPHPLLGTLENIPVVQIAAGYCYLLALA-CQPSGMAVYSV----GCGLGGKLGHGSR-----TDEKHPRLIEQFQL 208 (384)
Q Consensus 139 ~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~-~~~~G~~vy~~----G~n~~gqlg~~~~-----~~~~~p~~i~~~~~ 208 (384)
.. +.+..+.++..|.+|.+..+--+++. . +| .||-. +++.+++-.+.-. -....|..+..+..
T Consensus 168 f~----~~~~i~~dg~~V~~I~~t~nGRIF~~G~--dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 168 FN----TSFKISVDGVSVNCITYTENGRIFFAGR--DG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred cc----cceeeecCCceEEEEEeccCCcEEEeec--CC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 11 11222345666777776666666666 3 55 55432 2333333111100 11123543333212
Q ss_pred CCCCcEEEEcCCcce--EEEeCCCCEEEEeCCCCCccCC
Q 016725 209 LNLQPVVVAAGAWHA--AVVGQDGRVCTWGWGRYGCLGH 245 (384)
Q Consensus 209 ~~~~i~~i~~g~~~~--~~lt~~g~vy~wG~n~~gqlg~ 245 (384)
...+|.+|+...... .++++.|.+-+|=....|+-+.
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCccce
Confidence 455788888887764 5567888888886555444433
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=78.64 E-value=89 Score=32.59 Aligned_cols=120 Identities=15% Similarity=0.048 Sum_probs=66.7
Q ss_pred EEEEEeCCC--eeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEe-cCCCCCcEEEEEeCCCeEEE--EEcCCCEE
Q 016725 49 IIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV-ESLKNIFVVQAAIGNFFTAV--LSREGRVY 123 (384)
Q Consensus 49 i~~i~~G~~--~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i-~~~~~~~i~~I~~G~~~~~~--lt~~G~vy 123 (384)
|.+.+.++. .++++...|+=.++|....|||+.-+ . ..+-..+ +.-.-.++..++-..+-.++ =.+||+|-
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe--W--qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE--W--QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEE--e--eccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 455555544 35566667888889998888887653 1 1111111 11112246666655553333 35788888
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCC
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLG 186 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~ 186 (384)
+|-..+.-. ..++..- -.....++++.-.+..+...- || .|..|-...|
T Consensus 376 vWn~~SgfC--------~vTFteH---ts~Vt~v~f~~~g~~llssSL--DG-tVRAwDlkRY 424 (893)
T KOG0291|consen 376 VWNTQSGFC--------FVTFTEH---TSGVTAVQFTARGNVLLSSSL--DG-TVRAWDLKRY 424 (893)
T ss_pred EEeccCceE--------EEEeccC---CCceEEEEEEecCCEEEEeec--CC-eEEeeeeccc
Confidence 885433111 1222222 223345566666666666665 99 9999977654
No 28
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=74.36 E-value=30 Score=39.16 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=67.4
Q ss_pred CeEEEEE-eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcc-eEEEeCCCCE
Q 016725 155 PVVQIAA-GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH-AAVVGQDGRV 232 (384)
Q Consensus 155 ~i~~i~~-g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~-~~~lt~~g~v 232 (384)
.|..++. +.++.++|++ .| +|-.. . ..-.|..+.. +.....|++++.-..| -+|++.+|+|
T Consensus 704 ~i~a~Avv~~~~fvald~--qg-~lt~h-----------~--k~g~p~~l~~-~gl~G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 704 VITAFAVVNDNKFVALDD--QG-DLTAH-----------Q--KPGRPVPLSR-PGLSGEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred cceeEEEEcCCceEEecc--CC-ccccc-----------c--CCCCCccCCC-CCCCcchhheeeccccceeEecCCCce
Confidence 3443333 6667777776 66 55432 1 1112555544 2234578899988886 5788999999
Q ss_pred EEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCC
Q 016725 233 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG 282 (384)
Q Consensus 233 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g 282 (384)
|..=.-. -|-+.........++++..+.+.++..+....+|.+.+.-++
T Consensus 767 f~~~k~~-WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 767 FRLPKEA-WQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eecCHHH-hhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 9743211 111111222335677777778889999999999988877665
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=73.03 E-value=74 Score=30.54 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=57.1
Q ss_pred CCcEEEEEeCCC-ee-EEEEcCCC-EEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC-eEEEEEcCCC
Q 016725 46 GIRIIQAAAGAG-RT-MLISDAGQ-VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGR 121 (384)
Q Consensus 46 ~~~i~~i~~G~~-~~-~~lt~~g~-vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~-~~~~lt~~G~ 121 (384)
...+..|..|.. |. ++.+.||+ +|..+. .|.+ ..+...+...+..|..|.. +.++++.||+
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-------------SVIDLATGKVVATIKVGGNPRGIAVSPDGK 90 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-------------EEEETTSSSEEEEEE-SSEEEEEEE--TTT
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-------------EEEECCcccEEEEEecCCCcceEEEcCCCC
Confidence 335677777654 54 45678887 887653 2221 1233334556888888777 7889999998
Q ss_pred EEEEEcCCCCcccCCCCCCccccccccc-----ccCCCCeEEEEEeCCce---eEEEeeCCCCEEEEE
Q 016725 122 VYTFSWGNDARLGHHTEPNDVEPHPLLG-----TLENIPVVQIAAGYCYL---LALACQPSGMAVYSV 181 (384)
Q Consensus 122 vy~~G~n~~gqlg~~~~~~~~~~~~i~~-----~~~~~~i~~i~~g~~~~---~~l~~~~~G~~vy~~ 181 (384)
...-+....+++..-+......-..|+. .....++..|.+....- +.+.+ .+ ++|.-
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--~~-~I~vV 155 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--TG-EIWVV 155 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--TT-EEEEE
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--CC-eEEEE
Confidence 6665655555555433222111112211 11344677776644433 33333 46 88766
No 30
>PLN02153 epithiospecifier protein
Probab=72.59 E-value=86 Score=29.48 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=12.1
Q ss_pred CceeEEEeeCCCCEEEEEecC
Q 016725 164 CYLLALACQPSGMAVYSVGCG 184 (384)
Q Consensus 164 ~~~~~l~~~~~G~~vy~~G~n 184 (384)
.|++++. ++ ++|++|-.
T Consensus 130 ~~~~~~~---~~-~iyv~GG~ 146 (341)
T PLN02153 130 FHSMASD---EN-HVYVFGGV 146 (341)
T ss_pred eeEEEEE---CC-EEEEECCc
Confidence 4555554 77 99999864
No 31
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=72.16 E-value=83 Score=29.32 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=11.8
Q ss_pred EEEEeCCCCEEEEeCCC
Q 016725 342 TFALTESGKLYAFGAGD 358 (384)
Q Consensus 342 ~~~lt~~g~l~~~G~n~ 358 (384)
+.+...++++|..|-.+
T Consensus 217 ~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 217 ASIKINESLLLCIGGFN 233 (323)
T ss_pred eEEEECCCEEEEECCcC
Confidence 33445678999998754
No 32
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=70.59 E-value=76 Score=32.92 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred eEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecC-------CCCCcEEEEEeCCC----eEEEEEcCCCEEEEE
Q 016725 59 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVES-------LKNIFVVQAAIGNF----FTAVLSREGRVYTFS 126 (384)
Q Consensus 59 ~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~-------~~~~~i~~I~~G~~----~~~~lt~~G~vy~~G 126 (384)
++++++||.-|.---|.|-.++.-+ .......|.+++. +..-.+.+|+||.. .+++||..|.|.-+.
T Consensus 170 av~fsEdgSYfvT~gnrHvk~wyl~-~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 170 AVAFSEDGSYFVTSGNRHVKLWYLQ-IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred EEEEccCCceeeeeeeeeEEEEEee-ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 3444555544444444444433332 1233444555442 22335888999998 899999999998654
No 33
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=69.72 E-value=1.4e+02 Score=31.88 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=39.1
Q ss_pred eCCCeEEEEEcCCC-EEEEEcCCCCcccCCCCCCc-ccccccccccCCCCeEEEEEeCCceeEEEeeCCC-CEEEEEec
Q 016725 108 IGNFFTAVLSREGR-VYTFSWGNDARLGHHTEPND-VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSG-MAVYSVGC 183 (384)
Q Consensus 108 ~G~~~~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~-~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G-~~vy~~G~ 183 (384)
.+....++++.+|+ |++||.+ |-+-.-..... ..|..|. ..+..|..|++-.++.+.-+. ++ -.+|-++.
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd--g~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~--~~tv~~y~fps 85 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD--GDIRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSE--QNTVLRYKFPS 85 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC--CceEEeecCCcccCCchhh--ccCceeEEEeecccceEEeec--cceEEEeeCCC
Confidence 34455677777775 4444443 32222222222 4555554 256778888888887777766 44 15565544
No 34
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=67.94 E-value=13 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.7
Q ss_pred CcEEEEEeCC-CeeEEEEcCCCEEEE
Q 016725 47 IRIIQAAAGA-GRTMLISDAGQVYAF 71 (384)
Q Consensus 47 ~~i~~i~~G~-~~~~~lt~~g~vy~~ 71 (384)
..+++|++|. ...-+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4799999999 888999999999863
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.77 E-value=44 Score=32.15 Aligned_cols=75 Identities=13% Similarity=0.036 Sum_probs=41.8
Q ss_pred CCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEE--eCCC
Q 016725 153 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVV--GQDG 230 (384)
Q Consensus 153 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~l--t~~g 230 (384)
+.+|..++-+.+--++|..-.+. .+..|-.-+ ...+.+-..-+....-|.+.+.|.+-.++. .+|+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e-----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQ-EIHLWDLEE-----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccC-eeEEeecch-----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 34577666666555555543455 777774321 111111112122333456777777755555 5899
Q ss_pred CEEEEeCCC
Q 016725 231 RVCTWGWGR 239 (384)
Q Consensus 231 ~vy~wG~n~ 239 (384)
+||.|-.-+
T Consensus 463 kvyIWhr~s 471 (519)
T KOG0293|consen 463 KVYIWHRIS 471 (519)
T ss_pred eEEEEEccC
Confidence 999997643
No 36
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=66.95 E-value=1.3e+02 Score=29.33 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=39.6
Q ss_pred CcEEEEEe-CCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEec--CCCCCcEEEEEeCCCeEEEEEcCCCEE
Q 016725 47 IRIIQAAA-GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE--SLKNIFVVQAAIGNFFTAVLSREGRVY 123 (384)
Q Consensus 47 ~~i~~i~~-G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~--~~~~~~i~~I~~G~~~~~~lt~~G~vy 123 (384)
.+|+.+.- -....++|++||.++.+ +.+|.. ....+..+. ...+.++-.+..+..=.++||.++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~--------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF--------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce--------eechhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 35666543 45578888889988876 333331 111222221 112223444455555578899999999
Q ss_pred EE
Q 016725 124 TF 125 (384)
Q Consensus 124 ~~ 125 (384)
..
T Consensus 151 ~v 152 (410)
T PF04841_consen 151 VV 152 (410)
T ss_pred EE
Confidence 77
No 37
>PHA03098 kelch-like protein; Provisional
Probab=66.66 E-value=1.2e+02 Score=30.56 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=11.7
Q ss_pred CcceEEEeCCCCEEEEeC
Q 016725 220 AWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~ 237 (384)
..|+++ .-+|++|++|-
T Consensus 381 ~~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVV-NVNNLIYVIGG 397 (534)
T ss_pred ccceEE-EECCEEEEECC
Confidence 445554 45789999985
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=66.26 E-value=87 Score=27.04 Aligned_cols=108 Identities=11% Similarity=-0.026 Sum_probs=50.7
Q ss_pred cEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC-eEEEEEc-CCCEE
Q 016725 48 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSR-EGRVY 123 (384)
Q Consensus 48 ~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~-~~~~lt~-~G~vy 123 (384)
.+..+..-. ...++...+|.|+.|-..... ....+.. ....|..+..... ..++... +|.|+
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~ 118 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGE-------------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIK 118 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-------------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEE
Confidence 343444332 355555668888888654311 0111111 1224566655443 3444444 88888
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEec
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 183 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 183 (384)
.|-......+ ..+. .....+..+.......+++....+| .|+.|-.
T Consensus 119 ~~~~~~~~~~-----------~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~ 164 (289)
T cd00200 119 VWDVETGKCL-----------TTLR--GHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDL 164 (289)
T ss_pred EEECCCcEEE-----------EEec--cCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEc
Confidence 8865421110 1111 1122355555555333333332266 8888854
No 39
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=65.68 E-value=1.7e+02 Score=30.08 Aligned_cols=57 Identities=16% Similarity=0.038 Sum_probs=31.0
Q ss_pred EEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEE---EcCCceEEEEecCCCEEEEeC
Q 016725 225 VVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHV---ATGDYTTFVVSEDGDVYSFGC 289 (384)
Q Consensus 225 ~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i---~~g~~~~~~lt~~g~vy~wG~ 289 (384)
+..-++.||+.|-.+. ..... + .....+...+...+ .....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~------~-VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALS------S-VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccc------e-EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5556779999995432 11010 0 11112222233333 345566667788999999986
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=64.97 E-value=74 Score=29.17 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=70.8
Q ss_pred eCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC--CC-eEEEEEcCCCEEEEEcCC-
Q 016725 54 AGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NF-FTAVLSREGRVYTFSWGN- 129 (384)
Q Consensus 54 ~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G--~~-~~~~lt~~G~vy~~G~n~- 129 (384)
.+.-|.++...||.||-- ..-.+.+|.-++ . ..+++.+..| .. |.+++..||..|.+-...
T Consensus 61 G~ap~dvapapdG~VWft-~qg~gaiGhLdP--------~------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~a 125 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFT-AQGTGAIGHLDP--------A------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLA 125 (353)
T ss_pred CCCccccccCCCCceEEe-cCccccceecCC--------C------CCceEEEecCCCCCCceEEECCCCCeeEecCcce
Confidence 455688889999999954 334444555431 1 1123333332 22 677777777777663332
Q ss_pred CCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecC-CCCcccCCCCCCCCCCeEEeeccc
Q 016725 130 DARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG-LGGKLGHGSRTDEKHPRLIEQFQL 208 (384)
Q Consensus 130 ~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n-~~gqlg~~~~~~~~~p~~i~~~~~ 208 (384)
.+++ +.. ....++.+.+ .+.+-+.-.+.+++. .| .||.-|.+ .||.|.......+.-|..
T Consensus 126 I~R~--dpk--t~evt~f~lp------~~~a~~nlet~vfD~--~G-~lWFt~q~G~yGrLdPa~~~i~vfpaP------ 186 (353)
T COG4257 126 IGRL--DPK--TLEVTRFPLP------LEHADANLETAVFDP--WG-NLWFTGQIGAYGRLDPARNVISVFPAP------ 186 (353)
T ss_pred eEEe--cCc--ccceEEeecc------cccCCCcccceeeCC--Cc-cEEEeeccccceecCcccCceeeeccC------
Confidence 1122 111 1222222211 112223344566776 88 99998874 344332221111111111
Q ss_pred CCCCcEEEEcCCcceEEEeCCCCEEEE
Q 016725 209 LNLQPVVVAAGAWHAAVVGQDGRVCTW 235 (384)
Q Consensus 209 ~~~~i~~i~~g~~~~~~lt~~g~vy~w 235 (384)
..+.-.-++.|-||+||.-
T Consensus 187 --------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 --------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred --------CCCCCcceEECCCCcEEEE
Confidence 1233457889999999976
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=62.95 E-value=1e+02 Score=26.62 Aligned_cols=109 Identities=9% Similarity=-0.060 Sum_probs=53.7
Q ss_pred cEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC--CeEEEEEcCCCEE
Q 016725 48 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 123 (384)
Q Consensus 48 ~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~--~~~~~lt~~G~vy 123 (384)
.|..++... ...++...+|.|+.|-...... ...+.. ....+..+..-. .+.++...+|.|+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTLKG-HTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEEec-CCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 455554433 4555556689999986543210 011111 112233443332 2455566688898
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecC
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 184 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 184 (384)
.|-..... ....+. .....+..+.......+++....+| .|+.|-..
T Consensus 77 i~~~~~~~-----------~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 123 (289)
T cd00200 77 LWDLETGE-----------CVRTLT--GHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDVE 123 (289)
T ss_pred EEEcCccc-----------ceEEEe--ccCCcEEEEEEcCCCCEEEEecCCC-eEEEEECC
Confidence 88654321 111111 1122466666655444444442367 89988654
No 42
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.59 E-value=2.5e+02 Score=30.73 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred eeecccCCCcEEEEEeCCCe--eEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCC----CcEEEEEeCCCe
Q 016725 39 LYCRSLQGIRIIQAAAGAGR--TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKN----IFVVQAAIGNFF 112 (384)
Q Consensus 39 ~~~~~~~~~~i~~i~~G~~~--~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~----~~i~~I~~G~~~ 112 (384)
..+.... .|.+|+....+ .++++.||+|..|-..... ......|.....+.. ..-.......-+
T Consensus 421 ~~l~~~~--~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 421 YELELPS--PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN--------MWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred eEEcCCC--CcEEEEEeCCCCeEEEEECCCCEEEEEecCCC--------cccccCcchhhhcccccccccccccccccEE
Q ss_pred EEEEEcCCCEEEEEcC--CCCcccCCCCCCcccccccccccCCCCeEEEEEeCCcee-EEEeeCCCCEEEEEecCCCCcc
Q 016725 113 TAVLSREGRVYTFSWG--NDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLL-ALACQPSGMAVYSVGCGLGGKL 189 (384)
Q Consensus 113 ~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~-~l~~~~~G~~vy~~G~n~~gql 189 (384)
-++..++..+++.-.. ....+-.-.......+..+........++.+.+...+.. ++....+| ++|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G-~v~---------- 559 (928)
T PF04762_consen 491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDG-KVF---------- 559 (928)
T ss_pred EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCC-EEE----------
Q ss_pred cCCCCCCCCCCeEEeecccCCCCcEEEEcCCcc----eEEEeCCCCEEE
Q 016725 190 GHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH----AAVVGQDGRVCT 234 (384)
Q Consensus 190 g~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~----~~~lt~~g~vy~ 234 (384)
..........+..|+..-..+.-...+... .+.|+..|++|+
T Consensus 560 ---~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~ 605 (928)
T PF04762_consen 560 ---QLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA 605 (928)
T ss_pred ---EeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE
No 43
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=57.53 E-value=2.3e+02 Score=29.05 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=33.7
Q ss_pred EEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeC
Q 016725 277 VVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 356 (384)
Q Consensus 277 ~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~ 356 (384)
+..-+++||+.|-... . .....++.+......+..++. -.....+..+..-++++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~-----------------~~~~~VE~ydp~~~~W~~v~~--m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-T-----------------SALSSVERYDPETNQWTMVAP--MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-C-----------------CccceEEEEcCCCCceeEccc--CccccccccEEEECCEEEEEec
Confidence 5667889999996432 0 011113333333344444321 1115566667777999999987
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.85 E-value=2e+02 Score=27.88 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=37.9
Q ss_pred eEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeeccc--CCCCcEEEEcCCcceEEE-eCCCCE
Q 016725 156 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL--LNLQPVVVAAGAWHAAVV-GQDGRV 232 (384)
Q Consensus 156 i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~--~~~~i~~i~~g~~~~~~l-t~~g~v 232 (384)
|.....|.+..++..-+.|+ +||.|-.-. -..+..++. ....++.-.--..+++|- .+||++
T Consensus 443 IrSCFgg~~~~fiaSGSED~-kvyIWhr~s--------------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDS-KVYIWHRIS--------------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred EEeccCCCCcceEEecCCCc-eEEEEEccC--------------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 55666677777777766688 999995422 112222111 111122222222344443 578999
Q ss_pred EEEeCCC
Q 016725 233 CTWGWGR 239 (384)
Q Consensus 233 y~wG~n~ 239 (384)
..||...
T Consensus 508 RIWg~~~ 514 (519)
T KOG0293|consen 508 RIWGPSD 514 (519)
T ss_pred EEecCCc
Confidence 9999754
No 45
>PHA02713 hypothetical protein; Provisional
Probab=55.55 E-value=2.4e+02 Score=28.73 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=10.4
Q ss_pred EEEecCCCEEEEeC
Q 016725 276 FVVSEDGDVYSFGC 289 (384)
Q Consensus 276 ~~lt~~g~vy~wG~ 289 (384)
.+..-+|+||+.|-
T Consensus 458 ~~~~~~~~IYv~GG 471 (557)
T PHA02713 458 GVVSHKDDIYVVCD 471 (557)
T ss_pred cEEEECCEEEEEeC
Confidence 34566789999985
No 46
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=55.21 E-value=13 Score=22.66 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=15.5
Q ss_pred ceEEEeCCCCEEEEeCCC
Q 016725 222 HAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 222 ~~~~lt~~g~vy~wG~n~ 239 (384)
+.++++.+|++|+.|...
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 579999999999999643
No 47
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=55.10 E-value=36 Score=19.10 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCeeEEEEcCCCEEEE
Q 016725 47 IRIIQAAAGAGRTMLISDAGQVYAF 71 (384)
Q Consensus 47 ~~i~~i~~G~~~~~~lt~~g~vy~~ 71 (384)
..|..|+.|....++.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 4789999999999999998876543
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=54.57 E-value=1.7e+02 Score=26.51 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=39.2
Q ss_pred cccccccccccCCCCeEE-EEEeCCceeEE-EeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEc
Q 016725 141 DVEPHPLLGTLENIPVVQ-IAAGYCYLLAL-ACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA 218 (384)
Q Consensus 141 ~~~~~~i~~~~~~~~i~~-i~~g~~~~~~l-~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~ 218 (384)
...|+.+..-... |.. +-|-..++++- ++ ++ .|..|-... -+.+..+. .+..+.++-.
T Consensus 133 ~App~E~~ghtg~--Ir~v~wc~eD~~iLSSad--d~-tVRLWD~rT--------------gt~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 133 KAPPKEISGHTGG--IRTVLWCHEDKCILSSAD--DK-TVRLWDHRT--------------GTEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred CCCchhhcCCCCc--ceeEEEeccCceEEeecc--CC-ceEEEEecc--------------CcEEEEEe-cCCCCcceee
Confidence 3445555442223 333 34444555444 34 77 899995432 12222211 2223333322
Q ss_pred C-CcceEEEeCCCCEEEEeCCCCCcc
Q 016725 219 G-AWHAAVVGQDGRVCTWGWGRYGCL 243 (384)
Q Consensus 219 g-~~~~~~lt~~g~vy~wG~n~~gql 243 (384)
. ..+.+.+..-+.|-.|-.+.++.|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccce
Confidence 2 334555556666777776666544
No 49
>PHA02790 Kelch-like protein; Provisional
Probab=53.81 E-value=1.8e+02 Score=29.03 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=9.8
Q ss_pred EecCCCEEEEeCC
Q 016725 278 VSEDGDVYSFGCG 290 (384)
Q Consensus 278 lt~~g~vy~wG~n 290 (384)
..-+|+||+.|-.
T Consensus 443 ~v~~~~IYviGG~ 455 (480)
T PHA02790 443 IIVDNKLLLIGGF 455 (480)
T ss_pred EEECCEEEEECCc
Confidence 3458899999953
No 50
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=52.27 E-value=1.5e+02 Score=27.11 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=13.7
Q ss_pred cCCcceEEEeCCCCEEEEeC
Q 016725 218 AGAWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 218 ~g~~~~~~lt~~g~vy~wG~ 237 (384)
..+.|+++.-+ +++|+||-
T Consensus 78 qRYGHtvV~y~-d~~yvWGG 96 (392)
T KOG4693|consen 78 QRYGHTVVEYQ-DKAYVWGG 96 (392)
T ss_pred hhcCceEEEEc-ceEEEEcC
Confidence 34568877755 48999985
No 51
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=49.82 E-value=3.6e+02 Score=28.97 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=39.8
Q ss_pred CCCeeEEEEcCCC-EEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCC--EEEEEc
Q 016725 55 GAGRTMLISDAGQ-VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR--VYTFSW 127 (384)
Q Consensus 55 G~~~~~~lt~~g~-vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~--vy~~G~ 127 (384)
+....+.++.+|+ |+++|.+..-..=.. ......|.-+.. .+..|..|+|-..|.+.-++++. +|.++.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~---~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKT---NSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeec---CCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 3355666666665 566665542211000 011134555543 46679999999999999999985 454443
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=47.46 E-value=1.6e+02 Score=27.02 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=56.4
Q ss_pred cEEEEEeC---CCeeEEEEcCCCEEEEecCC-CCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEE
Q 016725 48 RIIQAAAG---AGRTMLISDAGQVYAFGKDS-FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 123 (384)
Q Consensus 48 ~i~~i~~G---~~~~~~lt~~g~vy~~G~n~-~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy 123 (384)
.++.+..| .-|.+++.+||..|.+-... .++++..+ -+...-|.. .+-+-+.--+.+++..|+||
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt--~evt~f~lp---------~~~a~~nlet~vfD~~G~lW 162 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKT--LEVTRFPLP---------LEHADANLETAVFDPWGNLW 162 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcc--cceEEeecc---------cccCCCcccceeeCCCccEE
Confidence 34444443 23788888888888875432 22222211 111111111 22334455678899999999
Q ss_pred EEEcCC-CCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEe
Q 016725 124 TFSWGN-DARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 182 (384)
Q Consensus 124 ~~G~n~-~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 182 (384)
.-|.+. +|+|--........|.+ . -+.-+-++.+- || +||.--
T Consensus 163 Ft~q~G~yGrLdPa~~~i~vfpaP--q-----------G~gpyGi~atp--dG-svwyas 206 (353)
T COG4257 163 FTGQIGAYGRLDPARNVISVFPAP--Q-----------GGGPYGICATP--DG-SVWYAS 206 (353)
T ss_pred EeeccccceecCcccCceeeeccC--C-----------CCCCcceEECC--CC-cEEEEe
Confidence 988754 55442221111111111 0 23455667777 99 999763
No 53
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.31 E-value=3.5e+02 Score=30.36 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=77.0
Q ss_pred EEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC-----cceEEEeCCCCEEEEeCCCCCc
Q 016725 168 ALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-----WHAAVVGQDGRVCTWGWGRYGC 242 (384)
Q Consensus 168 ~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~n~~gq 242 (384)
-++. |. +||.|-.+..+++..-+.-. .+.. ++..++..+|- .|.+++..--+++..|-.....
T Consensus 94 WiTi--Dn-~L~lWny~~~~e~~~~d~~s-htIl--------~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 94 WITI--DN-NLFLWNYESDNELAEYDGLS-HTIL--------KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF 161 (1311)
T ss_pred EEEe--CC-eEEEEEcCCCCccccccchh-hhhe--------eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc
Confidence 4565 77 99999987755542211111 1111 11222333332 3889998888899998633211
Q ss_pred cCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCC-----CCCCCC--C---CCCCCCCCCcccc
Q 016725 243 LGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGES-----ASLGHN--A---IADGQGNRHANVL 312 (384)
Q Consensus 243 lg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~-----g~lg~~--~---~~~~~~~~~~~~~ 312 (384)
.+..+... .--.|. ..+..|..|. -+++|+||.-|.+.. .+...+ . .+-..+.......
T Consensus 162 ~~~~~~f~--~~~~i~-~dg~~V~~I~--------~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 162 TGELSIFN--TSFKIS-VDGVSVNCIT--------YTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred cCcccccc--cceeee-cCCceEEEEE--------eccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 11111000 001111 1233333333 266666666665431 111111 0 0001111233445
Q ss_pred cCeeeecccccCccEEEEeeeccccccceEE--EEeCCCCEEEEeCCCCC
Q 016725 313 TPQLVTSLKQVNERVVQISLTNSIYWNAHTF--ALTESGKLYAFGAGDKG 360 (384)
Q Consensus 313 ~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~--~lt~~g~l~~~G~n~~g 360 (384)
.|..+..+-...+.|.+|+. .....+ .+++.|.+=+|--...|
T Consensus 231 vPs~~~~~~~~~dpI~qi~I-----D~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITI-----DNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEe-----ccccceeeeeccCceEEEEEccCCC
Confidence 55532222134678999998 766554 45677877666444434
No 54
>PHA03098 kelch-like protein; Provisional
Probab=46.21 E-value=3.2e+02 Score=27.42 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=10.6
Q ss_pred EEEEcCCCEEEEecC
Q 016725 60 MLISDAGQVYAFGKD 74 (384)
Q Consensus 60 ~~lt~~g~vy~~G~n 74 (384)
.++.-++.||..|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 345566789999954
No 55
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=45.88 E-value=2.6e+02 Score=26.29 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=59.2
Q ss_pred eEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCc--EEEEcCCc--ceEEEeCCCCEEEEeCCCCCc
Q 016725 167 LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQP--VVVAAGAW--HAAVVGQDGRVCTWGWGRYGC 242 (384)
Q Consensus 167 ~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i--~~i~~g~~--~~~~lt~~g~vy~wG~n~~gq 242 (384)
++|.+.-++ .+-+|-...+++--+.........+.+..++.....| +..++-.. -.++..+.|+||+|-...
T Consensus 263 ~ilSkscen-aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~--- 338 (385)
T KOG1034|consen 263 FILSKSCEN-AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN--- 338 (385)
T ss_pred heeecccCc-eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC---
Confidence 355553344 8888865433221111222333334444433232222 22222211 234446889999998643
Q ss_pred cCCCCCCCccCcEEeeecCCCcEEEEEcCCce--EEEEecCCCEEEEeC
Q 016725 243 LGHGNEECESVPKVVQALNDVKAIHVATGDYT--TFVVSEDGDVYSFGC 289 (384)
Q Consensus 243 lg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~--~~~lt~~g~vy~wG~ 289 (384)
.++...++......+..|.+.+...+- .++.++++.||.|-+
T Consensus 339 -----~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 339 -----NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -----CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 222244455555556667766665544 445688899999864
No 56
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.20 E-value=4e+02 Score=28.14 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=40.6
Q ss_pred cEEEEEeCCCeeEEE--EcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcCCCEE
Q 016725 48 RIIQAAAGAGRTMLI--SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVY 123 (384)
Q Consensus 48 ~i~~i~~G~~~~~~l--t~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~G~vy 123 (384)
.|+.|.-..+.=+++ .+|-.+..||-+.. +. ..|..+...++ .|+.-..+.+ +.+.+.+||.++
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~----------k~-~~~~~l~gHkd-~VvacfF~~~~~~l~tvskdG~l~ 214 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGN----------KN-LFTYALNGHKD-YVVACFFGANSLDLYTVSKDGALF 214 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEeccc----------cc-cceEeccCCCc-ceEEEEeccCcceEEEEecCceEE
Confidence 566665444433333 35556666766542 11 33444444433 3555444443 778899999999
Q ss_pred EEEcCC
Q 016725 124 TFSWGN 129 (384)
Q Consensus 124 ~~G~n~ 129 (384)
.|.++.
T Consensus 215 ~W~~~~ 220 (893)
T KOG0291|consen 215 VWTCDL 220 (893)
T ss_pred EEEecC
Confidence 999884
No 57
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=42.36 E-value=1e+02 Score=29.56 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=43.6
Q ss_pred cEEEEEeCCCe---eEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEE
Q 016725 48 RIIQAAAGAGR---TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 124 (384)
Q Consensus 48 ~i~~i~~G~~~---~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~ 124 (384)
.++.+++++.+ .+++..+|++.-|..+. .+.++. ....+.+|..=....+|++..|+||.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~----------------Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV----------------LKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe----------------eeEccC-CCceeeEEEEECCEEEEEcCCCeEEE
Confidence 34445667665 66777888888886432 222221 35569999998889999999999998
Q ss_pred EE
Q 016725 125 FS 126 (384)
Q Consensus 125 ~G 126 (384)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 76
No 58
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=42.10 E-value=3.9e+02 Score=27.30 Aligned_cols=150 Identities=17% Similarity=0.083 Sum_probs=71.1
Q ss_pred CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCC--------------CCcEEEEEeCCCeEEEEEcCCCE
Q 016725 57 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK--------------NIFVVQAAIGNFFTAVLSREGRV 122 (384)
Q Consensus 57 ~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~--------------~~~i~~I~~G~~~~~~lt~~G~v 122 (384)
.-++-+..||+|-.|- .+....|+....+. ...++-...-..|+++-|+.|.|
T Consensus 306 ~~f~s~ssDG~i~~W~-------------~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWD-------------TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CceEEEecCCcEeeee-------------ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 3366677799999991 33334443332211 11133334556789999999999
Q ss_pred EEEEcCCCCcccCCCCC-CcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCe
Q 016725 123 YTFSWGNDARLGHHTEP-NDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPR 201 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~-~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~ 201 (384)
|.+-+... .... ...++.... .....+|..|.....+--.+...-|- .|..|=. .....|.
T Consensus 373 ~~~~r~g~-----~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~-----------~~~~~Pl 434 (555)
T KOG1587|consen 373 YKGCRKGY-----TPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSE-----------DVIASPL 434 (555)
T ss_pred EEEeccCC-----cccccccccccccc-cccCcceEeeecCCCccceeeeeccc-eeEeccc-----------cCCCCcc
Confidence 97433221 1111 111111111 13344566666655544444431233 4444421 1122222
Q ss_pred EEeecccCCCCcEEEEcCCcc---eEEEeCCCCEEEEeCCC
Q 016725 202 LIEQFQLLNLQPVVVAAGAWH---AAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 202 ~i~~~~~~~~~i~~i~~g~~~---~~~lt~~g~vy~wG~n~ 239 (384)
.... .....+.+++=...| .++.+.+|+++.|-.+.
T Consensus 435 ~~~~--~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 435 LSLD--SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred hhhh--hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 2111 111124455544444 33345699999997654
No 59
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.47 E-value=3.8e+02 Score=26.85 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=48.9
Q ss_pred EEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEe
Q 016725 103 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 182 (384)
Q Consensus 103 i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 182 (384)
=.-|.||+.|..+.+-.|..+.=-..-. ...+.+-|..+..+.+-- +++-+++| .++.|+
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~~~f------------------ek~ekk~Vl~v~F~engd-viTgDS~G-~i~Iw~ 273 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQGIF------------------EKREKKFVLCVTFLENGD-VITGDSGG-NILIWS 273 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEeecc------------------ccccceEEEEEEEcCCCC-EEeecCCc-eEEEEe
Confidence 4457899999888877776553211111 001112244555555444 34444577 999998
Q ss_pred cCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEE
Q 016725 183 CGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 234 (384)
Q Consensus 183 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 234 (384)
.... ++. +-+.+.-|.-+++++..+|.|..
T Consensus 274 ~~~~---------------~~~-------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 274 KGTN---------------RIS-------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred CCCc---------------eEE-------eEeeecCCceEEEEEecCccEee
Confidence 6321 011 11224455556777777777776
No 60
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=40.49 E-value=76 Score=29.69 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=41.6
Q ss_pred eeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeE--EEEEcCCCEEEEEc
Q 016725 58 RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFT--AVLSREGRVYTFSW 127 (384)
Q Consensus 58 ~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~--~~lt~~G~vy~~G~ 127 (384)
-.++..+.|+||.|--.. .+....++......+..|.+.+....-+ ++.++++-||-|-+
T Consensus 321 ~la~gnq~g~v~vwdL~~----------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDN----------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHhhccCCCcEEEEECCC----------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 344566789999997644 2222566676677788899998877744 55677888887743
No 61
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=40.03 E-value=3.7e+02 Score=26.40 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=42.5
Q ss_pred EEeCCCeEEEEEcCCCEEEEEcCC-CCc-ccCCCCCCccccccccc---ccCCCCeEEEEEeCCceeEEEeeCCCCEEEE
Q 016725 106 AAIGNFFTAVLSREGRVYTFSWGN-DAR-LGHHTEPNDVEPHPLLG---TLENIPVVQIAAGYCYLLALACQPSGMAVYS 180 (384)
Q Consensus 106 I~~G~~~~~~lt~~G~vy~~G~n~-~gq-lg~~~~~~~~~~~~i~~---~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 180 (384)
+.-+..+.++=+++|++|..=... .|| .+.........-+++.. --.+..|...+....-++++.-+.+| +|-+
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg-~Vcv 303 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG-KVCV 303 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-CEEE
Confidence 334566777778999988543222 111 00000001111122221 01124577777788888888877788 8888
Q ss_pred EecCC
Q 016725 181 VGCGL 185 (384)
Q Consensus 181 ~G~n~ 185 (384)
|-..+
T Consensus 304 Wdi~S 308 (476)
T KOG0646|consen 304 WDIYS 308 (476)
T ss_pred Eecch
Confidence 86544
No 62
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.93 E-value=2.8e+02 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=23.2
Q ss_pred cCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCc
Q 016725 151 LENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK 188 (384)
Q Consensus 151 ~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq 188 (384)
..+.+|-.++.-+.|-+.-- +| .||+|--|+.-.
T Consensus 60 ahdgpiy~~~f~d~~Lls~g---dG-~V~gw~W~E~~e 93 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGG---DG-LVYGWEWNEEEE 93 (325)
T ss_pred ccCCCeeeeeeehhheeecc---Cc-eEEEeeehhhhh
Confidence 34566777777665544333 78 999998887655
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=38.93 E-value=1.3e+02 Score=28.94 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=45.2
Q ss_pred cEEEEcCCcc---eEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEe
Q 016725 213 PVVVAAGAWH---AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 288 (384)
Q Consensus 213 i~~i~~g~~~---~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG 288 (384)
++.+.++..+ .+++..+|++..|-.+ .++.++. ....+.+|.--....+|++..|++|++.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 4456777775 7888899999888632 3445542 5567888888888888998889999876
No 64
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=38.92 E-value=3.5e+02 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=12.8
Q ss_pred eeEEEEcCCCEEEEecCC
Q 016725 58 RTMLISDAGQVYAFGKDS 75 (384)
Q Consensus 58 ~~~~lt~~g~vy~~G~n~ 75 (384)
|+++...+++||.+|-..
T Consensus 132 ~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 132 HVAVSLHNGKAYITGGVN 149 (376)
T ss_pred eEEEEeeCCEEEEECCCC
Confidence 454444689999999753
No 65
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=38.53 E-value=3.3e+02 Score=25.25 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=11.7
Q ss_pred EEEEecCCCEEEEeCCC
Q 016725 275 TFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 275 ~~~lt~~g~vy~wG~n~ 291 (384)
+.+...+++||++|-..
T Consensus 217 ~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 217 ASIKINESLLLCIGGFN 233 (323)
T ss_pred eEEEECCCEEEEECCcC
Confidence 33445678999999643
No 66
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=36.76 E-value=72 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=27.0
Q ss_pred cCEEecCCCCCcEEEEEeC-CCeEEEEEcCCCEEEEEcCCCCcc
Q 016725 91 SPQLVESLKNIFVVQAAIG-NFFTAVLSREGRVYTFSWGNDARL 133 (384)
Q Consensus 91 ~p~~i~~~~~~~i~~I~~G-~~~~~~lt~~G~vy~~G~n~~gql 133 (384)
-|..+.. +..=..|+|. ....++|++||.+|+-+--+.|.+
T Consensus 8 ~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 3444443 3346779999 889999999999998776666543
No 67
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=36.62 E-value=3.6e+02 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.5
Q ss_pred cCCceEEEEecCCCEEEEeCCC
Q 016725 270 TGDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 270 ~g~~~~~~lt~~g~vy~wG~n~ 291 (384)
+-..|.++++-+|.||+||-..
T Consensus 231 pRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCcceEEecCCCcEEEEcchh
Confidence 3457888999999999999543
No 68
>PRK05560 DNA gyrase subunit A; Validated
Probab=36.18 E-value=5.8e+02 Score=27.48 Aligned_cols=270 Identities=12% Similarity=0.061 Sum_probs=127.8
Q ss_pred eCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEE--EeCCCeEEEEEcCCCEEEEEcCCCC
Q 016725 54 AGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDA 131 (384)
Q Consensus 54 ~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I--~~G~~~~~~lt~~G~vy~~G~n~~g 131 (384)
.-....++|+.+|.+-.--...+.....+ ......+..-.+..+..+ +....+.+++|+.|++|..-...--
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~------~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP 569 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRG------GKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIP 569 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhccc------CCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCc
Confidence 34667888999998877644333210000 000000000112233333 3445568899999999988665432
Q ss_pred cccCCCCCCcccccccccccCCCCeEEEEEeC-----CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeec
Q 016725 132 RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF 206 (384)
Q Consensus 132 qlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-----~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~ 206 (384)
..+...... .....+.. ..+++|+.+.+-. ...++++. +| .+.-.-...+..... .-...+. +
T Consensus 570 ~~~~~~~G~-~i~~ll~L-~~~E~Iv~~i~~~~~~~e~~lvlvTk--~G-yiKRi~l~~~~~~~r------~G~~~ik-L 637 (805)
T PRK05560 570 EASRTARGR-PIVNLLPL-EPGEKITAILPVREFDDDKYLFFATK--NG-TVKKTSLSEFSNIRS------NGIIAIN-L 637 (805)
T ss_pred CCCcCCCCe-EHHHhcCC-CCCceEEEEEeccCCCCCCEEEEEeC--CC-EEEEEEhHHhhhccc------CCceeec-c
Confidence 222111000 11111222 3466788777644 34566666 88 666554333221100 0011111 1
Q ss_pred ccCCCCcEEEEcCC--cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEe-eecCCCcEEEEEcCC---ceEEEEec
Q 016725 207 QLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV-QALNDVKAIHVATGD---YTTFVVSE 280 (384)
Q Consensus 207 ~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i-~~~~~~~i~~i~~g~---~~~~~lt~ 280 (384)
. .+..++.+.... .+.+++|++|++|.+-...-...+.... ...+ ..-.+.+|+.+.+.. .+.+++|+
T Consensus 638 k-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk 711 (805)
T PRK05560 638 D-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGDEVVSMDVVREDSQEILTVTE 711 (805)
T ss_pred C-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCCEEEEEEEEcCCCcEEEEEEe
Confidence 1 123444443333 4589999999999886544333333221 1111 112355666655443 25677788
Q ss_pred CCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCC
Q 016725 281 DGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 360 (384)
Q Consensus 281 ~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g 360 (384)
.|.+--.--..+-....+ ......-.+...+..++.+.... +.+..+++|++|++..+-.++--
T Consensus 712 ~G~iKr~~l~e~~~~~R~-------------~kG~~~lkl~~~~d~lv~v~~v~---~~~~v~i~T~~G~~lrf~~~eI~ 775 (805)
T PRK05560 712 NGYGKRTPVSEYRLQGRG-------------GKGVITIKITEKNGKLVGALPVD---DDDEIMLITDSGKLIRTRVSEIS 775 (805)
T ss_pred CCeEEEEEHHHhhccCCC-------------CCcEEeeeccCCCCeEEEEEEec---CCCeEEEEecCCeEEEEEHHHCC
Confidence 886665432222111100 00111111111123444433211 55678888999998887766544
Q ss_pred CCC
Q 016725 361 QLG 363 (384)
Q Consensus 361 ~lg 363 (384)
.+|
T Consensus 776 ~~g 778 (805)
T PRK05560 776 ITG 778 (805)
T ss_pred ccc
Confidence 443
No 69
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=35.70 E-value=5.9e+02 Score=27.41 Aligned_cols=268 Identities=13% Similarity=0.077 Sum_probs=125.9
Q ss_pred eCCCeeEEEEcCCCEEEEecCCCCC--cc-cCCCCceeeecCEEecCCCCCcEEEE--EeCCCeEEEEEcCCCEEEEEcC
Q 016725 54 AGAGRTMLISDAGQVYAFGKDSFGE--AE-YGVQGTKLVTSPQLVESLKNIFVVQA--AIGNFFTAVLSREGRVYTFSWG 128 (384)
Q Consensus 54 ~G~~~~~~lt~~g~vy~~G~n~~gq--lG-~~~~~~~~~~~p~~i~~~~~~~i~~I--~~G~~~~~~lt~~G~vy~~G~n 128 (384)
.-....++|+.+|.+-..-...+.. ++ .+. . .+..-.+..+..+ +....+.+++|+.|++|..-..
T Consensus 494 ~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~------s---~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~ 564 (800)
T TIGR01063 494 ARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGV------S---GADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVY 564 (800)
T ss_pred CcceEEEEEcCCCEEEecchhhhhhhcccCcCc------c---ccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhh
Confidence 3455678889999776654433321 10 110 0 0000012233333 3345568899999999987433
Q ss_pred CCCcccCCCCCCcccccccccccCCCCeEEEEEeC-----CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEE
Q 016725 129 NDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 203 (384)
Q Consensus 129 ~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-----~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i 203 (384)
.--..+...... .....+.. ..+++|+.+.+-. ...++++. +| .+.-.=.+.+..... .-...
T Consensus 565 ~IP~~~r~~~G~-~i~~ll~L-~~~E~Iv~~i~~~~~~~~~~lvliT~--~G-yiKRi~l~~~~~~~r-------~G~~a 632 (800)
T TIGR01063 565 QIPEASRTAKGK-PIVNLLPL-QPDERITAILSVKEFDDGLYLFFATK--NG-VVKKTSLTEFSNIRS-------NGIIA 632 (800)
T ss_pred hCcCCCcCCCCc-CHHHhccC-CCCCeEEEEEEeccCCCCCEEEEEeC--CC-EEEEEEhHHhhhhcc-------CCccc
Confidence 322221111000 11011121 3466777766622 24566666 88 766554433321100 00000
Q ss_pred eecccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEEe
Q 016725 204 EQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVS 279 (384)
Q Consensus 204 ~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt 279 (384)
-.+. .+..++.+... ..+.+++|++|++|..-...-...+....-.. .+..-.+.+|+.+.+- ..+.+++|
T Consensus 633 iklk-e~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT 707 (800)
T TIGR01063 633 IKLD-DGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNEDFVVSLLVVSEESYLLIVT 707 (800)
T ss_pred ccCC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCCEEEEEEEeccccEEEEEe
Confidence 0011 12234443333 34589999999999886655444443221111 1222245567666543 23467778
Q ss_pred cCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCC
Q 016725 280 EDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDK 359 (384)
Q Consensus 280 ~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~ 359 (384)
++|.+.-.--..+-....+ ......-.+...+..++.+... ...+..++++++|++..+-.++-
T Consensus 708 ~~G~~Kr~~l~e~~~~~R~-------------~kGv~~ikl~~~~d~lv~~~~v---~~~~~v~liT~~G~~lrf~~~eI 771 (800)
T TIGR01063 708 ENGYGKRTSIEEYRETSRG-------------GKGVKSIKITDRNGQVVGAIAV---DDDDELMLITSAGKLIRTSVQDV 771 (800)
T ss_pred cCCcEEEEEHHHccccCCC-------------CcceEEEEccCCCCeEEEEEEe---cCCCeEEEEecCCeEEEeeHhhC
Confidence 8887666543322111100 0111111111112344443331 14556888899999888776654
Q ss_pred CCCC
Q 016725 360 GQLG 363 (384)
Q Consensus 360 g~lg 363 (384)
-.+|
T Consensus 772 ~~~g 775 (800)
T TIGR01063 772 SEQG 775 (800)
T ss_pred Cccc
Confidence 4444
No 70
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=34.91 E-value=6.3e+02 Score=28.43 Aligned_cols=122 Identities=15% Similarity=0.093 Sum_probs=64.7
Q ss_pred CeEEEEEeCCc-eeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEE-EcCCcceEEE-eCCCC
Q 016725 155 PVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV-AAGAWHAAVV-GQDGR 231 (384)
Q Consensus 155 ~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i-~~g~~~~~~l-t~~g~ 231 (384)
.+.+++....| +++++-..|| .|..|-... -.|.+ ...+.+.+... .+.++..+ .|+..+.+|+ ++||.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DG-tVKvW~~~k--~~~~~-~s~rS~ltys~----~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDG-TVKVWNLRK--LEGEG-GSARSELTYSP----EGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred cccceeecCCCCceEEEecCCc-eEEEeeehh--hhcCc-ceeeeeEEEec----cCCceEEEEeccCCCeEEEEcCCCe
Confidence 35577888877 8888887788 999996532 22221 11111111111 22233333 2334444433 79999
Q ss_pred EEEEeCCCCCccCCCCCCCccCcEEeeec---CCCcEEEEEcCC----c-eEEEEecCCCEEEEeCCC
Q 016725 232 VCTWGWGRYGCLGHGNEECESVPKVVQAL---NDVKAIHVATGD----Y-TTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 232 vy~wG~n~~gqlg~~~~~~~~~p~~i~~~---~~~~i~~i~~g~----~-~~~~lt~~g~vy~wG~n~ 291 (384)
|-+.+-+.+. .....+..+..+ ..-.+++..+-. . -.++.|..+++..|+...
T Consensus 1122 v~~~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1122 VRVLRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEEEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 9998877641 111222222211 122344444332 1 245578889999999654
No 71
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=33.52 E-value=4.3e+02 Score=25.18 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=11.8
Q ss_pred EEEeCCCCEEEEeCCC
Q 016725 343 FALTESGKLYAFGAGD 358 (384)
Q Consensus 343 ~~lt~~g~l~~~G~n~ 358 (384)
.++.-+++||..|-..
T Consensus 338 ~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 338 VSVSWNNGVLLIGGET 353 (376)
T ss_pred EEEEeCCEEEEEcCCC
Confidence 3556678999998743
No 72
>PRK05560 DNA gyrase subunit A; Validated
Probab=33.35 E-value=6.4e+02 Score=27.15 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=106.8
Q ss_pred CCcEEEE--EeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC-----CeEEEEEc
Q 016725 46 GIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSR 118 (384)
Q Consensus 46 ~~~i~~i--~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~-----~~~~~lt~ 118 (384)
+..++.+ +....+.++.|+.|++|..-...--..+... ........+....+++|+.+.+-. ...+++|.
T Consensus 536 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~---~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk 612 (805)
T PRK05560 536 DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA---RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATK 612 (805)
T ss_pred CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC---CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeC
Confidence 3355554 3345568889999999998776433322111 111111122333567788887654 35688899
Q ss_pred CCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE--eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCC
Q 016725 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 196 (384)
Q Consensus 119 ~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 196 (384)
+|.+.-.-...+-....+ -.....+. .+..++.+.. .....+++++ +| ++|.+-.......+....
T Consensus 613 ~GyiKRi~l~~~~~~~r~----G~~~ikLk---e~D~lv~v~~~~~~d~lll~T~--~G-r~~r~~~~eIp~~gr~~~-- 680 (805)
T PRK05560 613 NGTVKKTSLSEFSNIRSN----GIIAINLD---EGDELIGVRLTDGDDDILLATK--NG-KAIRFPESDVRPMGRTAR-- 680 (805)
T ss_pred CCEEEEEEhHHhhhcccC----CceeeccC---CCCEEEEEEEeCCCCEEEEEEC--CC-cEEEEEhhhcCccCcccC--
Confidence 997664433222110000 00011111 2233444433 3345677776 88 999886654433332211
Q ss_pred CCCCeEEeecccCCCCcEEEEcCC---cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecC-CCcEEEE--Ec
Q 016725 197 EKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN-DVKAIHV--AT 270 (384)
Q Consensus 197 ~~~p~~i~~~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-~~~i~~i--~~ 270 (384)
...+..+ ..+.+|+.+.+.. .+.+++|+.|.+.-.-...+-.-..+. ..-..+.... +..++.+ ..
T Consensus 681 ---Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~----kG~~~lkl~~~~d~lv~v~~v~ 752 (805)
T PRK05560 681 ---GVRGIKL-REGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG----KGVITIKITEKNGKLVGALPVD 752 (805)
T ss_pred ---CcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC----CcEEeeeccCCCCeEEEEEEec
Confidence 1111121 1344566555433 256777888865544322221111100 0001111101 1233332 23
Q ss_pred CCceEEEEecCCCEEEEeCCC
Q 016725 271 GDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 271 g~~~~~~lt~~g~vy~wG~n~ 291 (384)
+.+..+++|.+|++..+-.+.
T Consensus 753 ~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 753 DDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred CCCeEEEEecCCeEEEEEHHH
Confidence 445688889999988876554
No 73
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.57 E-value=41 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=11.9
Q ss_pred CcceEEEeCCCCEEEEeC
Q 016725 220 AWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~ 237 (384)
..|+++...++++|++|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 568888887889999984
No 74
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=31.38 E-value=4.1e+02 Score=24.32 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCEEEEEcCCC--CcccCCCCCCcccccccccccCCCCeEEEE--EeCCceeEEEeeCCCCEEEEEecC
Q 016725 110 NFFTAVLSREGRVYTFSWGND--ARLGHHTEPNDVEPHPLLGTLENIPVVQIA--AGYCYLLALACQPSGMAVYSVGCG 184 (384)
Q Consensus 110 ~~~~~~lt~~G~vy~~G~n~~--gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~--~g~~~~~~l~~~~~G~~vy~~G~n 184 (384)
..|++++-+| ++|.||-.++ |.+..--. ..|..-+ ....+|.-.. +-+.|++++. .. +.|.+|--
T Consensus 80 YGHtvV~y~d-~~yvWGGRND~egaCN~Ly~---fDp~t~~--W~~p~v~G~vPgaRDGHsAcV~---gn-~MyiFGGy 148 (392)
T KOG4693|consen 80 YGHTVVEYQD-KAYVWGGRNDDEGACNLLYE---FDPETNV--WKKPEVEGFVPGARDGHSACVW---GN-QMYIFGGY 148 (392)
T ss_pred cCceEEEEcc-eEEEEcCccCcccccceeee---ecccccc--ccccceeeecCCccCCceeeEE---Cc-EEEEecCh
Confidence 3478766655 8999975543 33321110 1111000 1111122222 3456787776 55 99999853
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.34 E-value=5e+02 Score=27.52 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=65.0
Q ss_pred eEEEeCCCCEEEEeCCCCCccCCC------C-CCC-ccCc-EEeee-cCCCcEEEEEcCCce-EEEEecCCCEEE-----
Q 016725 223 AAVVGQDGRVCTWGWGRYGCLGHG------N-EEC-ESVP-KVVQA-LNDVKAIHVATGDYT-TFVVSEDGDVYS----- 286 (384)
Q Consensus 223 ~~~lt~~g~vy~wG~n~~gqlg~~------~-~~~-~~~p-~~i~~-~~~~~i~~i~~g~~~-~~~lt~~g~vy~----- 286 (384)
-+....++.+|+|=.+...-+..+ . ... .... +.+.. ...-.|..|...... -++|.-...|.+
T Consensus 35 NLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~ 114 (717)
T PF10168_consen 35 NLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPR 114 (717)
T ss_pred eeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEecc
Confidence 344445689999987664333221 0 010 0111 11111 122346666654433 234433334333
Q ss_pred -EeCCCCCCCCCCCCCCCCCCCCcccccCeeeeccc-ccCccEEEEeeeccccccceEEEEeCCCCEEEEeC
Q 016725 287 -FGCGESASLGHNAIADGQGNRHANVLTPQLVTSLK-QVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 356 (384)
Q Consensus 287 -wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~ 356 (384)
||.+..-..|-.. ..+...|+.-..+. .....|.++.=++.+..+.|.++||+|+.+-.+-.
T Consensus 115 r~g~~~~~~~g~~~--------i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 115 RWGKNGEFEDGKKE--------INCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred ccCccccccCCCcc--------eeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 6665433333222 34444444433332 24568899988888888899999999987554443
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=31.17 E-value=8.1e+02 Score=27.66 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=44.0
Q ss_pred cEEEEEeCCCe-eEEEE--cCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEE-EeCCCeEEEE-EcCCCE
Q 016725 48 RIIQAAAGAGR-TMLIS--DAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQA-AIGNFFTAVL-SREGRV 122 (384)
Q Consensus 48 ~i~~i~~G~~~-~~~lt--~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I-~~G~~~~~~l-t~~G~v 122 (384)
.+.+++....| .++++ +||.|-.|-.... .|.+. .....-+.. ..+.++..| .|++.+.+++ +.||.|
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~---s~rS~ltys--~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGG---SARSELTYS--PEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcc---eeeeeEEEe--ccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 46677777777 66665 7899999976442 22211 111111111 134456666 4666655444 778888
Q ss_pred EEEEcCCC
Q 016725 123 YTFSWGND 130 (384)
Q Consensus 123 y~~G~n~~ 130 (384)
-..+.+.+
T Consensus 1123 ~~~~id~~ 1130 (1431)
T KOG1240|consen 1123 RVLRIDHY 1130 (1431)
T ss_pred EEEEcccc
Confidence 87776654
No 77
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=30.60 E-value=5.5e+02 Score=25.47 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=46.2
Q ss_pred EEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEE
Q 016725 265 AIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFA 344 (384)
Q Consensus 265 i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~ 344 (384)
.+.+.......++.+-++.++++....-.++... ....-..+..+ -.++.+ ..+..++
T Consensus 390 ~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk-----------K~feGh~vaGy------s~~v~f-----SpDG~~l 447 (503)
T KOG0282|consen 390 CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK-----------KRFEGHSVAGY------SCQVDF-----SPDGRTL 447 (503)
T ss_pred ceecCCCCCeehhhccCceEEEEecccccccCHh-----------hhhcceeccCc------eeeEEE-----cCCCCeE
Confidence 4555666677888888999999887644333211 11122223222 445555 3333344
Q ss_pred E--eCCCCEEEEeCCCCCCCCcc
Q 016725 345 L--TESGKLYAFGAGDKGQLGIE 365 (384)
Q Consensus 345 l--t~~g~l~~~G~n~~g~lg~~ 365 (384)
+ ..+|+||.|+++..-.+...
T Consensus 448 ~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 448 CSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred EeecCCccEEEeechhhhhhhcc
Confidence 4 57899999999876555443
No 78
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=29.77 E-value=2.7e+02 Score=21.68 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=39.3
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEE-eCCCeEEEEEcCCCEEE
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAA-IGNFFTAVLSREGRVYT 124 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~-~G~~~~~~lt~~G~vy~ 124 (384)
+.+++-|-..+.+-+.+||.|-+-+.... .........+.. + .+.|- .-....++++.+|+||+
T Consensus 1 R~~~Ly~~~~~~L~i~~~g~V~gt~~~~~---------~~s~~~i~~~~~--g--~V~i~~~~s~~YLcmn~~G~ly~ 65 (122)
T PF00167_consen 1 RHVQLYCRTGYFLQINPNGTVDGTGDDNS---------PYSVFEIHSVGF--G--VVRIRGVKSCRYLCMNKCGRLYG 65 (122)
T ss_dssp EEEEEEETTSEEEEEETTSBEEEESSTTS---------TTGEEEEEEEET--T--EEEEEETTTTEEEEEBTTSBEEE
T ss_pred CCEEEEECCCeEEEECCCCeEeCCCCcCc---------ceeEEEEEeccc--e--EEEEEEecceEEEEECCCCeEcc
Confidence 35677777788899999999988765421 112222222221 1 33332 33456788999999994
No 79
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=29.51 E-value=2.9e+02 Score=21.91 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=37.9
Q ss_pred CcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEE
Q 016725 212 QPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 286 (384)
Q Consensus 212 ~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 286 (384)
+.+++.|-....+.+..||.|-.--. ......-.++.......|.--.+-....+++++.|+||.
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~----------~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRD----------ESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccC----------CCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEE
Confidence 34567777656688888887753221 111122223333333344444455677899999999996
No 80
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.46 E-value=1e+02 Score=17.05 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=13.2
Q ss_pred eeEEEEcCCCEEEEecCC
Q 016725 58 RTMLISDAGQVYAFGKDS 75 (384)
Q Consensus 58 ~~~~lt~~g~vy~~G~n~ 75 (384)
+.++++++|+||..-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567788888888876543
No 81
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=27.86 E-value=2.9e+02 Score=21.47 Aligned_cols=65 Identities=12% Similarity=-0.009 Sum_probs=40.1
Q ss_pred cEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEE
Q 016725 213 PVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 287 (384)
Q Consensus 213 i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 287 (384)
.+++.|-..+.+.+..||.|-+-+... ...... .+.......|.--.+-....+++.+.|+||.-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~---------~~~s~~-~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN---------SPYSVF-EIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT---------STTGEE-EEEEEETTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC---------cceeEE-EEEeccceEEEEEEecceEEEEECCCCeEccc
Confidence 457778878889999999998765431 111122 22222222343334445678999999999974
No 82
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=27.85 E-value=8.2e+02 Score=26.65 Aligned_cols=185 Identities=11% Similarity=0.086 Sum_probs=97.5
Q ss_pred CCCCCCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC
Q 016725 31 GREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN 110 (384)
Q Consensus 31 g~~~~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~ 110 (384)
|..+...-.-+...+..+...++++. +.++..+++++.+|.-. ++.....|...+ .|..+.|-.
T Consensus 154 g~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~---------G~V~LrD~~s~~-----~iht~~aHs 217 (1118)
T KOG1275|consen 154 GLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCGDTR---------GTVFLRDPNSFE-----TIHTFDAHS 217 (1118)
T ss_pred chhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEeeccc---------ceEEeecCCcCc-----eeeeeeccc
Confidence 34433332333333334555566654 77888999999999854 245555555443 366666655
Q ss_pred CeEEEEEcCC-CEEEEEcCCC-CcccCCCCCCc--------ccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEE
Q 016725 111 FFTAVLSREG-RVYTFSWGND-ARLGHHTEPND--------VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 180 (384)
Q Consensus 111 ~~~~~lt~~G-~vy~~G~n~~-gqlg~~~~~~~--------~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 180 (384)
......+-.| .|.+||.... +-+-.++.... ..|.+++ .+..+.+..-.....++++. ..|
T Consensus 218 ~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S-~sG----- 288 (1118)
T KOG1275|consen 218 GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTS-QSG----- 288 (1118)
T ss_pred cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEe-ccc-----
Confidence 5444444444 6778887653 23333333221 2233322 23345555556666666553 122
Q ss_pred EecCCCCcccCCCCCCCCCC-eEEeecc--cCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCC
Q 016725 181 VGCGLGGKLGHGSRTDEKHP-RLIEQFQ--LLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN 247 (384)
Q Consensus 181 ~G~n~~gqlg~~~~~~~~~p-~~i~~~~--~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~ 247 (384)
+.|+. +......| ..+.... .....--+|++..+...+.+.+|.|=.|-.+...|+....
T Consensus 289 -----q~q~v--d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s 351 (1118)
T KOG1275|consen 289 -----QFQFV--DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEYS 351 (1118)
T ss_pred -----ceeec--cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCCc
Confidence 12222 21111122 1111111 1112334788888888888899999999988877775543
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=27.25 E-value=7.6e+02 Score=26.09 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=56.5
Q ss_pred EEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCC
Q 016725 106 AAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGL 185 (384)
Q Consensus 106 I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~ 185 (384)
++.|..|=+++. ||.|-.|..+. ..+| ..+|..++.....+.+++. -...|-.|-.
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~a-----------snki-----ss~Vsav~fsEdgSYfvT~--gnrHvk~wyl-- 193 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGA-----------SNKI-----SSVVSAVAFSEDGSYFVTS--GNRHVKLWYL-- 193 (1080)
T ss_pred EeeccccceEEE----hhhhhhccccc-----------cccc-----ceeEEEEEEccCCceeeee--eeeeEEEEEe--
Confidence 345666666653 55665554331 1111 2346667777777777774 2235655532
Q ss_pred CCcccCCCCCCCCCCeEEee----c-ccCCCCcEEEEcCCc----ceEEEeCCCCEEEEeC
Q 016725 186 GGKLGHGSRTDEKHPRLIEQ----F-QLLNLQPVVVAAGAW----HAAVVGQDGRVCTWGW 237 (384)
Q Consensus 186 ~gqlg~~~~~~~~~p~~i~~----~-~~~~~~i~~i~~g~~----~~~~lt~~g~vy~wG~ 237 (384)
|.+. ....|.++.. + +..+..+..++||.. .++++|..|.|.=+-.
T Consensus 194 --~~~~----KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 194 --QIQS----KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred --eccc----cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 1111 1222222221 0 123445788999988 8999999998876543
No 84
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=27.11 E-value=3.2e+02 Score=21.65 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=35.2
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEE
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 124 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~ 124 (384)
+.+++-|-..+.+.+..||.|-+--.... .....+ +.......|.--..-....+++++.|+||+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~~~~---------~~~ile---~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRDESS---------SFTILE---IIAVAVGVVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccCCCC---------cceEEE---EEeccCCEEEEEEcccceEEEECCCCCEEE
Confidence 56777776657777888888765322110 111111 111111122222334557788999999993
No 85
>PHA02713 hypothetical protein; Provisional
Probab=26.92 E-value=2.4e+02 Score=28.79 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=10.7
Q ss_pred EEEeCCCCEEEEeCC
Q 016725 224 AVVGQDGRVCTWGWG 238 (384)
Q Consensus 224 ~~lt~~g~vy~wG~n 238 (384)
.+..-+|+||++|-.
T Consensus 346 ~~~~~~g~IYviGG~ 360 (557)
T PHA02713 346 SLAVIDDTIYAIGGQ 360 (557)
T ss_pred eEEEECCEEEEECCc
Confidence 344557899999953
No 86
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=26.68 E-value=8.3e+02 Score=26.32 Aligned_cols=223 Identities=11% Similarity=0.029 Sum_probs=104.5
Q ss_pred CCcEEEE--EeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC-----CCeEEEEEc
Q 016725 46 GIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLSR 118 (384)
Q Consensus 46 ~~~i~~i--~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G-----~~~~~~lt~ 118 (384)
+..++.+ +...++.++.|+.|++|..-...--..+... ........+....+++|+.+.+- ....+++|.
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~---~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~ 610 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTA---KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATK 610 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCC---CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeC
Confidence 3345444 3345568889999999999554332222111 00111112233346678777652 235678889
Q ss_pred CCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE--eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCC
Q 016725 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 196 (384)
Q Consensus 119 ~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 196 (384)
+|.+--.-...+-... ..-..-+.. -.+..++.+.. .....+++++ +| ++|.+-.......+....
T Consensus 611 ~GyiKRi~l~~~~~~~------r~G~~aikl-ke~D~lv~v~~~~~~d~lll~Ts--~G-r~~r~~v~eIp~~gr~~~-- 678 (800)
T TIGR01063 611 NGVVKKTSLTEFSNIR------SNGIIAIKL-DDGDELISVRLTSGDDEVMLGSK--NG-KAVRFPEEDVRPMGRAAR-- 678 (800)
T ss_pred CCEEEEEEhHHhhhhc------cCCcccccC-CCCCEEEEEEEeCCCCEEEEEEC--CC-cEEEEEhhhcCCcCCCCC--
Confidence 9876644333221100 000000100 01223444433 3345677776 88 999887665444433221
Q ss_pred CCCCeEEeecccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecC-CCcEEEEE--cC
Q 016725 197 EKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN-DVKAIHVA--TG 271 (384)
Q Consensus 197 ~~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-~~~i~~i~--~g 271 (384)
...+..+. .+.+|+.+..- ..+.+++|++|.+.-.-...+-.-..+. ..-..+..-. +..++.+. ..
T Consensus 679 ---Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~----kGv~~ikl~~~~d~lv~~~~v~~ 750 (800)
T TIGR01063 679 ---GVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG----KGVKSIKITDRNGQVVGAIAVDD 750 (800)
T ss_pred ---CeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC----cceEEEEccCCCCeEEEEEEecC
Confidence 11111111 34456655443 2356777888866554332221111100 0001111011 12333322 23
Q ss_pred CceEEEEecCCCEEEEeCCC
Q 016725 272 DYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 272 ~~~~~~lt~~g~vy~wG~n~ 291 (384)
.+..+++|++|++..+-...
T Consensus 751 ~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 751 DDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CCeEEEEecCCeEEEeeHhh
Confidence 44577888899888776543
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=26.18 E-value=5.5e+02 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=16.2
Q ss_pred CCeeEEEEcCCCEEEEecCCCCCc
Q 016725 56 AGRTMLISDAGQVYAFGKDSFGEA 79 (384)
Q Consensus 56 ~~~~~~lt~~g~vy~~G~n~~gql 79 (384)
.+|.+--.+||.|-.|-.....++
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECL 383 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhh
Confidence 345556678899999977554443
No 88
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=23.91 E-value=3.6e+02 Score=21.21 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=31.7
Q ss_pred EEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEE-EeCCCeEEEEEcCCCEE
Q 016725 52 AAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQA-AIGNFFTAVLSREGRVY 123 (384)
Q Consensus 52 i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I-~~G~~~~~~lt~~G~vy 123 (384)
+-|-..+.+.+..||.|-+-..... ..... .+..... .++.| ..-....++++++|+||
T Consensus 3 Ly~~~~~~L~I~~dG~V~Gt~~~~~-----------~~s~l-~~~s~~~-g~v~i~~v~s~~YLCmn~~G~ly 62 (123)
T cd00058 3 LYCRTGFHLQILPDGTVDGTRDDSS-----------SYTIL-ERIAVAV-GVVSIKGVASCRYLCMNKCGKLY 62 (123)
T ss_pred EEEcCCeEEEEcCCCcEecccCCCC-----------CCceE-EEEECCC-CEEEEEEcccceEEEECCCCCEE
Confidence 3444467788888999876443220 00111 1111112 23333 23345678889999999
No 89
>PLN02772 guanylate kinase
Probab=23.84 E-value=1.7e+02 Score=28.35 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=17.5
Q ss_pred cCCceEEEEecCCCEEEEeCC
Q 016725 270 TGDYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 270 ~g~~~~~~lt~~g~vy~wG~n 290 (384)
+...|++++-.+.+|++.+..
T Consensus 75 ~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 75 PCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CCCcceEEEECCceEEEEeCC
Confidence 556899999999999999854
No 90
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=23.82 E-value=3.7e+02 Score=21.20 Aligned_cols=62 Identities=10% Similarity=-0.069 Sum_probs=35.7
Q ss_pred EEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEE
Q 016725 215 VVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 286 (384)
Q Consensus 215 ~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 286 (384)
++.|-..+.+.+..||+|-+-... ....+-..+.......|.--.+-....+++.+.|+||.
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~----------~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~ 63 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDD----------SSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYG 63 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCC----------CCCCceEEEEECCCCEEEEEEcccceEEEECCCCCEEE
Confidence 345555678888889988643321 11122223333333233333344567888999999996
No 91
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=23.21 E-value=6.4e+02 Score=23.77 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=29.1
Q ss_pred cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEE
Q 016725 221 WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 287 (384)
Q Consensus 221 ~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 287 (384)
.+.++.+.+|.||++-..+-..+. .++.....-......-+++.++.+.+|+||+|
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~-----------~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVA-----------RLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEE-----------EEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 456677888999988543311110 11110000011111223567788899999986
No 92
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=23.17 E-value=6.3e+02 Score=23.71 Aligned_cols=163 Identities=9% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCccccc
Q 016725 66 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 145 (384)
Q Consensus 66 g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~ 145 (384)
++|..|-.-. .....++..-.. |+.|..-+.|.++++++ ++|+|-..+.
T Consensus 75 NkviIWDD~k----------~~~i~el~f~~~-----I~~V~l~r~riVvvl~~-~I~VytF~~n--------------- 123 (346)
T KOG2111|consen 75 NKVIIWDDLK----------ERCIIELSFNSE-----IKAVKLRRDRIVVVLEN-KIYVYTFPDN--------------- 123 (346)
T ss_pred ceEEEEeccc----------CcEEEEEEeccc-----eeeEEEcCCeEEEEecC-eEEEEEcCCC---------------
Q ss_pred ccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCC---CcEEEEcCCcc
Q 016725 146 PLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNL---QPVVVAAGAWH 222 (384)
Q Consensus 146 ~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~---~i~~i~~g~~~ 222 (384)
++..+........+-.+++....+. .+-++=...-||+ +|..+..... .++...-..--
T Consensus 124 -----~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~Gqv------------Qi~dL~~~~~~~p~~I~AH~s~Ia 185 (346)
T KOG2111|consen 124 -----PKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQV------------QIVDLASTKPNAPSIINAHDSDIA 185 (346)
T ss_pred -----hhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceE------------EEEEhhhcCcCCceEEEcccCcee
Q ss_pred eEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--------------CceEEEEecCCCEEEEe
Q 016725 223 AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--------------DYTTFVVSEDGDVYSFG 288 (384)
Q Consensus 223 ~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--------------~~~~~~lt~~g~vy~wG 288 (384)
+++|+.+|.+.+-+ ...-..-+.+.+..+.++..+.-| ...-++.++.|.|..|+
T Consensus 186 cv~Ln~~Gt~vATa-----------StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 186 CVALNLQGTLVATA-----------STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEcCCccEEEEe-----------ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
No 93
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.03 E-value=1.3e+02 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.7
Q ss_pred ccCCCcEEEEEeCCCeeEEEEcCC
Q 016725 43 SLQGIRIIQAAAGAGRTMLISDAG 66 (384)
Q Consensus 43 ~~~~~~i~~i~~G~~~~~~lt~~g 66 (384)
.+++.+|+++..|-..+++..++|
T Consensus 8 ~~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 8 RAPDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CCGC-EEEEEEEBSSEEEEEETT-
T ss_pred hCCCCEEEEEEEcCCEEEEEeCCC
Confidence 345779999999999999999998
No 94
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=22.89 E-value=6.5e+02 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.0
Q ss_pred cceEEEeCCCCEEEE
Q 016725 221 WHAAVVGQDGRVCTW 235 (384)
Q Consensus 221 ~~~~~lt~~g~vy~w 235 (384)
.+.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 457778889999986
No 95
>PLN02193 nitrile-specifier protein
Probab=22.84 E-value=7.5e+02 Score=24.48 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=11.6
Q ss_pred CeeEEEEcCCCEEEEecC
Q 016725 57 GRTMLISDAGQVYAFGKD 74 (384)
Q Consensus 57 ~~~~~lt~~g~vy~~G~n 74 (384)
.|+++.. ++.||.+|-.
T Consensus 168 ~h~~~~~-~~~iyv~GG~ 184 (470)
T PLN02193 168 SHGIAQV-GNKIYSFGGE 184 (470)
T ss_pred ccEEEEE-CCEEEEECCc
Confidence 3555544 5789999874
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=22.39 E-value=4.2e+02 Score=26.15 Aligned_cols=206 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhHHHhhcCCCcCcceecccCCcccccCCCCCCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCC
Q 016725 4 PAYQVAHLSPILRPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGV 83 (384)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~ 83 (384)
..|+|++.+. -..+.-.+|....|......--.-+...-...-..++.-..+.++...+|+||.|--+..-.
T Consensus 307 e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~----- 378 (514)
T KOG2055|consen 307 ERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC----- 378 (514)
T ss_pred heeEecCCCC---eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-----
Q ss_pred CCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCC--CCcccCCCCCCcccccccccccCCCCeEEEEE
Q 016725 84 QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGN--DARLGHHTEPNDVEPHPLLGTLENIPVVQIAA 161 (384)
Q Consensus 84 ~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~--~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~ 161 (384)
-.+.++=-|=...++++.-+|..+++|... -..--..+......|+++.. +.+....=-+.
T Consensus 379 ----------------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~-~dNLtt~Itsl 441 (514)
T KOG2055|consen 379 ----------------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT-VDNLTTAITSL 441 (514)
T ss_pred ----------------EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh-hhhhheeeeee
Q ss_pred eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCC
Q 016725 162 GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRY 240 (384)
Q Consensus 162 g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~ 240 (384)
-.+|..=|. -+.+-..-..-.|-+-+.-....--+....+....+...++-+.....+=++.|+|-.|-.+.|
T Consensus 442 ~Fn~d~qiL------AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 442 QFNHDAQIL------AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred eeCcchhhh------hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.25 E-value=6e+02 Score=23.11 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=49.6
Q ss_pred eecCEEecCCCCCcEEEE-EeCCCeEEEE-EcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCce
Q 016725 89 VTSPQLVESLKNIFVVQA-AIGNFFTAVL-SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYL 166 (384)
Q Consensus 89 ~~~p~~i~~~~~~~i~~I-~~G~~~~~~l-t~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~ 166 (384)
...|+.+....+. |+.+ -|-.+|++.= ++++.|-.|-....-+ -+.+ .-+.++..+.....--
T Consensus 133 ~App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----------v~sL---~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 133 KAPPKEISGHTGG-IRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----------VQSL---EFNSPVTSLEVSQDGR 197 (334)
T ss_pred CCCchhhcCCCCc-ceeEEEeccCceEEeeccCCceEEEEeccCcE-----------EEEE---ecCCCCcceeeccCCC
Confidence 3456666554442 5544 5777777665 7888888886544211 1111 1122344444433333
Q ss_pred eEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEee
Q 016725 167 LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ 205 (384)
Q Consensus 167 ~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~ 205 (384)
++.+. .|+.|--|-.+.++-| +....|..+..
T Consensus 198 ilTia--~gssV~Fwdaksf~~l-----Ks~k~P~nV~S 229 (334)
T KOG0278|consen 198 ILTIA--YGSSVKFWDAKSFGLL-----KSYKMPCNVES 229 (334)
T ss_pred EEEEe--cCceeEEeccccccce-----eeccCcccccc
Confidence 33333 6658888877766543 23444554443
No 98
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=21.34 E-value=7.8e+02 Score=24.46 Aligned_cols=34 Identities=9% Similarity=-0.134 Sum_probs=21.9
Q ss_pred EEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccC
Q 016725 157 VQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH 191 (384)
Q Consensus 157 ~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~ 191 (384)
.++.++..-..+..-+.+| +||.|+-+..-.+..
T Consensus 436 ~~v~fSpDG~~l~SGdsdG-~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDG-KVNFWDWKTTKLVSK 469 (503)
T ss_pred eeEEEcCCCCeEEeecCCc-cEEEeechhhhhhhc
Confidence 3455555555566666688 999999876544433
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.30 E-value=3.9e+02 Score=24.98 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEE-eCCCCEEEEeC
Q 016725 282 GDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFAL-TESGKLYAFGA 356 (384)
Q Consensus 282 g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~l-t~~g~l~~~G~ 356 (384)
++++.|-.++.+ .....+..+.+....|.+|+-.+.+.-.+|.+|+ ++|| |+.|--
T Consensus 199 ~~~~Iye~~e~~------------------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 199 NKVKIYEYNENG------------------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred cceEEEEecCCc------------------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 377777766543 3445555565677789999888877788899888 6777 777643
No 100
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=21.30 E-value=1.3e+02 Score=21.99 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.1
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCC
Q 016725 98 LKNIFVVQAAIGNFFTAVLSREG 120 (384)
Q Consensus 98 ~~~~~i~~I~~G~~~~~~lt~~G 120 (384)
.++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 44778999999999999999998
No 101
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=20.89 E-value=1e+02 Score=19.39 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=11.9
Q ss_pred CceeEEEeeCCCCEEEEEecC
Q 016725 164 CYLLALACQPSGMAVYSVGCG 184 (384)
Q Consensus 164 ~~~~~l~~~~~G~~vy~~G~n 184 (384)
.|++++. ++ ++|++|--
T Consensus 4 ~hs~~~~---~~-kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVL---DG-KIYVFGGY 20 (49)
T ss_pred ceEEEEE---CC-EEEEECCc
Confidence 4555554 78 99999854
No 102
>PF13964 Kelch_6: Kelch motif
Probab=20.67 E-value=1.1e+02 Score=19.31 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=12.7
Q ss_pred CceeEEEeeCCCCEEEEEecCC
Q 016725 164 CYLLALACQPSGMAVYSVGCGL 185 (384)
Q Consensus 164 ~~~~~l~~~~~G~~vy~~G~n~ 185 (384)
.|+++.. ++ +||++|-..
T Consensus 4 ~~s~v~~---~~-~iyv~GG~~ 21 (50)
T PF13964_consen 4 GHSAVVV---GG-KIYVFGGYD 21 (50)
T ss_pred cCEEEEE---CC-EEEEECCCC
Confidence 4555555 78 999999643
No 103
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=20.27 E-value=67 Score=23.12 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.0
Q ss_pred CE-EEEeCCCCCC
Q 016725 350 KL-YAFGAGDKGQ 361 (384)
Q Consensus 350 ~l-~~~G~n~~g~ 361 (384)
.+ |+||+|+.-+
T Consensus 57 sv~waWGSNKnk~ 69 (84)
T PF07312_consen 57 SVYWAWGSNKNKQ 69 (84)
T ss_pred ceeeeeccCCCCC
Confidence 35 9999987653
No 104
>PLN02153 epithiospecifier protein
Probab=20.26 E-value=7.1e+02 Score=23.19 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=11.4
Q ss_pred EEEEecCCCEEEEeCC
Q 016725 275 TFVVSEDGDVYSFGCG 290 (384)
Q Consensus 275 ~~~lt~~g~vy~wG~n 290 (384)
.+.+..+++||.||--
T Consensus 308 ~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 308 TATVYGKNGLLMHGGK 323 (341)
T ss_pred ccccCCcceEEEEcCc
Confidence 4455667789999853
Done!