Query 016725
Match_columns 384
No_of_seqs 143 out of 1753
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 5E-67 1.7E-71 507.4 34.8 339 16-380 34-376 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 4.3E-66 1.5E-70 498.2 28.8 339 16-380 19-364 (389)
3 1a12_A RCC1, regulator of chro 100.0 5.1E-63 1.7E-67 480.6 34.8 336 16-380 26-384 (413)
4 4d9s_A UVB-resistance protein 100.0 6E-62 2E-66 471.8 36.0 309 47-381 16-325 (406)
5 3of7_A Regulator of chromosome 100.0 1.9E-61 6.5E-66 477.0 36.3 345 16-380 28-425 (473)
6 3mvd_K Regulator of chromosome 100.0 3E-61 1E-65 469.8 36.6 332 16-380 42-393 (423)
7 3kci_A Probable E3 ubiquitin-p 100.0 1.2E-58 4.2E-63 446.2 30.5 311 16-349 71-388 (389)
8 1a12_A RCC1, regulator of chro 100.0 2.1E-56 7E-61 434.2 30.4 312 16-350 77-411 (413)
9 3mvd_K Regulator of chromosome 100.0 9.9E-55 3.4E-59 423.7 33.1 308 16-350 93-420 (423)
10 3of7_A Regulator of chromosome 100.0 1.5E-54 5E-59 427.9 29.4 309 16-347 85-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 1.4E-48 4.6E-53 359.2 28.0 251 18-365 3-253 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.4E-44 8.1E-49 330.9 24.9 236 16-352 41-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.0 0.23 7.9E-06 46.9 28.9 244 46-360 173-416 (435)
14 1p22_A F-BOX/WD-repeat protein 96.5 0.54 1.8E-05 44.3 30.7 229 48-356 135-363 (435)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.5 0.58 2E-05 44.1 29.4 232 47-358 160-391 (445)
16 2ovr_B FBW7, F-BOX/WD repeat p 96.1 0.99 3.4E-05 42.5 31.6 225 49-358 122-348 (445)
17 4gbf_A Phikz131; 7-bladed beta 96.0 0.014 4.8E-07 50.5 6.6 71 212-295 310-380 (400)
18 4gbf_A Phikz131; 7-bladed beta 95.7 0.025 8.4E-07 49.0 6.9 85 47-146 309-396 (400)
19 2zwa_A Leucine carboxyl methyl 94.7 3.1 0.00011 42.1 20.3 18 340-357 657-674 (695)
20 3k26_A Polycomb protein EED; W 94.3 2.8 9.5E-05 37.5 23.0 264 47-356 70-364 (366)
21 1k3i_A Galactose oxidase precu 93.8 1.2 4.1E-05 44.8 15.1 77 272-361 457-534 (656)
22 1k3i_A Galactose oxidase precu 92.3 8.9 0.0003 38.3 19.0 73 220-294 457-534 (656)
23 3k26_A Polycomb protein EED; W 91.6 7.1 0.00024 34.7 25.7 209 46-291 18-260 (366)
24 4aez_A CDC20, WD repeat-contai 90.3 11 0.00037 34.6 29.2 239 46-361 134-383 (401)
25 2zwa_A Leucine carboxyl methyl 89.8 11 0.00037 38.1 16.7 19 219-237 597-615 (695)
26 3odt_A Protein DOA1; ubiquitin 88.5 11 0.00039 32.4 26.3 187 46-290 104-295 (313)
27 4aez_A CDC20, WD repeat-contai 88.1 16 0.00053 33.5 24.3 148 50-239 97-248 (401)
28 3zwl_B Eukaryotic translation 87.7 14 0.00049 32.6 28.5 163 47-238 75-248 (369)
29 1gxr_A ESG1, transducin-like e 87.4 14 0.00048 32.2 29.0 201 53-290 8-213 (337)
30 3v7d_B Cell division control p 86.1 22 0.00074 33.1 30.6 204 47-290 204-420 (464)
31 1sq9_A Antiviral protein SKI8; 84.7 22 0.00076 32.0 21.6 164 47-239 122-322 (397)
32 3v7d_B Cell division control p 84.5 26 0.00088 32.5 32.1 243 49-358 125-381 (464)
33 1gxr_A ESG1, transducin-like e 82.7 23 0.00079 30.7 28.3 190 47-290 98-295 (337)
34 3sfz_A APAF-1, apoptotic pepti 82.4 56 0.0019 34.9 19.4 110 102-239 1046-1158(1249)
35 3mmy_A MRNA export factor; mRN 82.1 26 0.00089 30.8 22.6 151 100-290 39-198 (368)
36 2aq5_A Coronin-1A; WD40 repeat 80.4 34 0.0012 31.1 28.5 156 52-238 40-206 (402)
37 4g56_B MGC81050 protein; prote 80.1 33 0.0011 30.8 27.0 152 103-289 97-256 (357)
38 2xyi_A Probable histone-bindin 79.2 39 0.0013 31.1 21.2 202 58-290 196-409 (430)
39 1sq9_A Antiviral protein SKI8; 79.1 35 0.0012 30.5 26.9 202 47-290 63-321 (397)
40 3jrp_A Fusion protein of prote 78.7 34 0.0012 30.2 32.1 198 47-290 12-239 (379)
41 2vpj_A Kelch-like protein 12; 77.8 34 0.0012 29.7 13.2 17 58-75 56-72 (301)
42 3mkq_A Coatomer beta'-subunit; 77.5 62 0.0021 32.4 27.6 190 48-289 15-215 (814)
43 3no0_A DNA gyrase subunit A; D 76.5 39 0.0013 29.6 21.6 218 100-363 23-251 (276)
44 3uc1_A DNA gyrase subunit A; D 76.1 45 0.0015 30.1 23.5 222 107-363 50-284 (327)
45 4asc_A Kelch repeat and BTB do 75.3 42 0.0014 29.4 15.3 18 220-238 140-157 (315)
46 1yfq_A Cell cycle arrest prote 74.9 42 0.0014 29.2 28.8 206 47-291 12-225 (342)
47 3odt_A Protein DOA1; ubiquitin 74.4 40 0.0014 28.8 28.0 230 48-358 61-296 (313)
48 1rwi_B Serine/threonine-protei 73.5 40 0.0014 28.3 15.2 16 274-289 195-210 (270)
49 3vl1_A 26S proteasome regulato 72.6 55 0.0019 29.5 26.2 101 56-184 109-211 (420)
50 4ery_A WD repeat-containing pr 71.9 48 0.0017 28.6 24.9 152 47-239 66-223 (312)
51 4ery_A WD repeat-containing pr 70.9 51 0.0017 28.4 24.6 191 47-290 24-222 (312)
52 3mkq_A Coatomer beta'-subunit; 70.7 90 0.0031 31.2 26.3 194 48-291 57-259 (814)
53 4aow_A Guanine nucleotide-bind 70.1 54 0.0018 28.4 25.1 67 211-290 216-285 (340)
54 3gre_A Serine/threonine-protei 66.7 77 0.0026 28.9 20.4 120 46-184 111-244 (437)
55 1r5m_A SIR4-interacting protei 65.3 76 0.0026 28.3 27.7 109 155-290 249-360 (425)
56 2aq5_A Coronin-1A; WD40 repeat 65.0 80 0.0027 28.5 26.6 118 47-183 82-205 (402)
57 4asc_A Kelch repeat and BTB do 63.7 39 0.0013 29.7 9.7 16 221-237 91-106 (315)
58 1erj_A Transcriptional repress 63.3 86 0.003 28.3 19.7 120 102-237 258-387 (393)
59 4gqb_B Methylosome protein 50; 62.8 84 0.0029 28.0 24.5 113 102-238 84-200 (344)
60 4a11_B DNA excision repair pro 62.6 84 0.0029 27.9 33.4 212 45-291 42-276 (408)
61 3no0_A DNA gyrase subunit A; D 62.3 80 0.0027 27.5 21.6 213 45-292 22-247 (276)
62 2xyi_A Probable histone-bindin 61.8 97 0.0033 28.4 26.0 266 48-357 130-409 (430)
63 4gga_A P55CDC, cell division c 60.7 99 0.0034 28.1 22.6 146 109-290 114-260 (420)
64 4g56_B MGC81050 protein; prote 60.2 94 0.0032 27.7 23.9 150 102-291 183-343 (357)
65 3p6j_A De novo designed beta-t 59.6 61 0.0021 25.3 11.5 109 45-181 28-139 (142)
66 3uc1_A DNA gyrase subunit A; D 58.5 1E+02 0.0035 27.6 21.0 222 48-292 43-280 (327)
67 3jrp_A Fusion protein of prote 58.2 95 0.0033 27.1 24.6 201 47-290 56-286 (379)
68 4ggc_A P55CDC, cell division c 57.8 88 0.003 26.6 24.6 67 48-128 29-97 (318)
69 3mmy_A MRNA export factor; mRN 56.3 1E+02 0.0034 26.8 28.0 195 45-291 38-247 (368)
70 3ii7_A Kelch-like protein 7; p 56.0 99 0.0034 26.7 17.8 17 220-237 141-157 (306)
71 1q7f_A NHL, brain tumor CG1071 54.5 98 0.0034 26.1 22.5 17 274-290 210-226 (286)
72 3jro_A Fusion protein of prote 53.6 1.8E+02 0.0063 29.0 22.6 204 47-291 54-285 (753)
73 3jro_A Fusion protein of prote 53.3 1.9E+02 0.0064 29.0 28.3 197 48-290 11-237 (753)
74 4e54_B DNA damage-binding prot 49.0 1.6E+02 0.0054 26.9 13.4 207 50-287 215-426 (435)
75 3i2n_A WD repeat-containing pr 48.5 1.3E+02 0.0045 25.9 22.8 180 24-239 89-291 (357)
76 2woz_A Kelch repeat and BTB do 47.8 1.4E+02 0.0048 25.9 14.9 17 220-237 150-166 (318)
77 3ii7_A Kelch-like protein 7; p 47.1 1.4E+02 0.0047 25.7 15.2 18 220-238 93-110 (306)
78 2pm9_A Protein WEB1, protein t 47.0 1.5E+02 0.0053 26.2 24.5 203 47-289 68-292 (416)
79 3ow8_A WD repeat-containing pr 46.1 1.5E+02 0.0051 25.8 21.7 145 102-288 166-318 (321)
80 1k8k_C P40, ARP2/3 complex 41 43.3 1.6E+02 0.0056 25.5 26.5 208 48-290 54-273 (372)
81 2uvk_A YJHT; unknown function, 41.7 1.8E+02 0.0063 25.6 13.2 18 271-289 109-126 (357)
82 3ow8_A WD repeat-containing pr 40.7 1.8E+02 0.0062 25.2 27.6 152 153-356 164-319 (321)
83 1zgk_A Kelch-like ECH-associat 39.7 1.8E+02 0.0063 25.0 12.3 17 220-237 160-176 (308)
84 1got_B GT-beta; complex (GTP-b 39.1 1.9E+02 0.0067 25.1 26.2 99 112-238 156-256 (340)
85 1wp5_A Topoisomerase IV; broke 38.2 2.2E+02 0.0074 25.4 23.0 231 45-295 37-281 (323)
86 3p6j_A De novo designed beta-t 38.2 1.4E+02 0.0048 23.2 13.1 110 151-286 27-138 (142)
87 2xzm_R RACK1; ribosome, transl 38.1 2E+02 0.0069 25.0 21.5 116 47-183 22-147 (343)
88 4a11_B DNA excision repair pro 37.3 2.1E+02 0.0073 25.1 28.3 223 99-359 42-277 (408)
89 1q7f_A NHL, brain tumor CG1071 37.1 1.8E+02 0.0063 24.3 15.7 17 222-238 210-226 (286)
90 1xip_A Nucleoporin NUP159; bet 37.0 2.5E+02 0.0085 25.8 14.0 98 156-287 90-187 (388)
91 2xn4_A Kelch-like protein 2; s 36.9 1.5E+02 0.005 25.5 8.8 16 221-237 244-259 (302)
92 2vpj_A Kelch-like protein 12; 34.7 2.1E+02 0.0073 24.3 14.5 18 220-238 104-121 (301)
93 3i2n_A WD repeat-containing pr 34.5 2.2E+02 0.0075 24.4 28.1 200 47-290 66-290 (357)
94 4ggc_A P55CDC, cell division c 34.3 2.1E+02 0.0071 24.1 18.7 143 111-289 36-179 (318)
95 2vdu_B TRNA (guanine-N(7)-)-me 31.1 3E+02 0.01 25.0 17.6 70 102-185 197-271 (450)
96 4aow_A Guanine nucleotide-bind 31.0 2.5E+02 0.0084 23.9 22.1 69 154-238 216-285 (340)
97 3ei3_B DNA damage-binding prot 28.9 3E+02 0.01 24.1 25.6 195 47-291 74-282 (383)
98 1wp5_A Topoisomerase IV; broke 28.4 3.1E+02 0.011 24.3 23.4 264 57-365 6-284 (323)
99 1zi0_A DNA gyrase subunit A; b 28.2 3.1E+02 0.01 24.1 27.2 263 57-360 4-279 (307)
100 1got_B GT-beta; complex (GTP-b 27.0 3.1E+02 0.011 23.8 20.3 70 102-183 228-299 (340)
101 3f3f_A Nucleoporin SEH1; struc 26.9 2.8E+02 0.0097 23.3 24.7 79 46-129 57-143 (351)
102 3pbp_A Nucleoporin NUP82; beta 26.7 3.4E+02 0.012 25.5 9.5 75 47-125 125-208 (452)
103 2ymu_A WD-40 repeat protein; u 26.1 4.1E+02 0.014 24.8 28.0 144 102-288 387-536 (577)
104 3q7x_A De novo designed beta-t 25.6 2.2E+02 0.0076 21.6 8.6 106 49-180 8-113 (132)
105 3vl1_A 26S proteasome regulato 25.3 3.5E+02 0.012 23.8 27.9 143 52-238 64-211 (420)
106 1pgu_A Actin interacting prote 24.9 4.3E+02 0.015 24.7 25.3 199 34-287 148-362 (615)
107 3sfz_A APAF-1, apoptotic pepti 24.2 6.4E+02 0.022 26.5 28.2 108 48-183 659-772 (1249)
108 2pm9_A Protein WEB1, protein t 24.1 3.7E+02 0.013 23.6 21.6 165 101-291 68-249 (416)
109 3gre_A Serine/threonine-protei 24.0 3.9E+02 0.013 23.9 17.6 60 56-128 182-244 (437)
110 3f3f_A Nucleoporin SEH1; struc 23.3 3.3E+02 0.011 22.8 27.7 124 47-185 12-143 (351)
111 1k8k_C P40, ARP2/3 complex 41 22.8 3.6E+02 0.012 23.1 27.2 251 47-358 9-274 (372)
112 3zwl_B Eukaryotic translation 22.6 3.6E+02 0.012 23.0 29.3 213 36-290 23-248 (369)
113 3l6v_A GYRA, DNA gyrase subuni 22.1 4.4E+02 0.015 23.9 22.5 232 50-299 51-324 (370)
114 1nun_A Fibroblast growth facto 21.6 2.9E+02 0.0098 21.4 7.3 66 47-124 14-79 (145)
115 3fvz_A Peptidyl-glycine alpha- 21.0 4E+02 0.014 22.9 22.6 23 53-75 22-44 (329)
116 3vu4_A KMHSV2; beta-propeller 20.8 4.2E+02 0.014 23.1 22.3 158 48-239 102-271 (355)
117 1xip_A Nucleoporin NUP159; bet 20.6 4.9E+02 0.017 23.7 13.2 76 36-128 79-154 (388)
118 3no2_A Uncharacterized protein 20.2 4E+02 0.014 22.5 23.3 24 274-298 245-268 (276)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5e-67 Score=507.39 Aligned_cols=339 Identities=28% Similarity=0.461 Sum_probs=311.1
Q ss_pred CcceecccCCcccccCCCC---CCcceeecccCCCcEEEEEeCCCeeEEEEcCC-CEEEEecCCCCCcccCCCCceeeec
Q 016725 16 RPDIINERNGKRNLLGREV---NGTPLYCRSLQGIRIIQAAAGAGRTMLISDAG-QVYAFGKDSFGEAEYGVQGTKLVTS 91 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~---~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g-~vy~~G~n~~gqlG~~~~~~~~~~~ 91 (384)
...+|.||.|..||||.++ ...|+++..+++.+|++|+||..|+++|++++ +||+||.|.+||||.++ ......
T Consensus 34 ~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~--~~~~~~ 111 (406)
T 4d9s_A 34 GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN--SSDLFT 111 (406)
T ss_dssp TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSS--CCCEEE
T ss_pred CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCC--CCcccc
Confidence 5789999999999999864 45788898888889999999999999999986 99999999999999997 566778
Q ss_pred CEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEe
Q 016725 92 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALAC 171 (384)
Q Consensus 92 p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~ 171 (384)
|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++.. +.+.+|++|+||..|+++|++
T Consensus 112 p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~hs~alt~ 190 (406)
T 4d9s_A 112 PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTE 190 (406)
T ss_dssp EEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEET
T ss_pred ceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cCCCcEEEEecCCCeEEEEeC
Confidence 8889888888999999999999999999999999999999999999888888998886 778899999999999999998
Q ss_pred eCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCc
Q 016725 172 QPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE 251 (384)
Q Consensus 172 ~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~ 251 (384)
+| +||+||.|.++|||.+.......|.++..+ ...+|++|+||.+|+++|+++|+||+||.|.++|||.++....
T Consensus 191 --~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~ 265 (406)
T 4d9s_A 191 --DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265 (406)
T ss_dssp --TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred --CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence 99 999999999999999998888888888754 4568999999999999999999999999999999999998888
Q ss_pred cCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEe
Q 016725 252 SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQIS 331 (384)
Q Consensus 252 ~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~ 331 (384)
..|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......|..+..+ ...+|++|+
T Consensus 266 ~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~p~~v~~~--~~~~v~~va 335 (406)
T 4d9s_A 266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--------NLDQCSPVQVRFP--DDQKVVQVS 335 (406)
T ss_dssp EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------SSCEEEEEEECCG--GGCCEEEEE
T ss_pred cccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--------CCCCccCEEEecc--CCCcEEEEE
Confidence 999999999999999999999999999999999999999999999997 5667788888766 567899999
Q ss_pred eeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 332 LTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 332 ~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
| |..|+++|+++|+||+||.|++||||++. ..+...|++|+
T Consensus 336 ~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~ 376 (406)
T 4d9s_A 336 C-----GWRHTLAVTERNNVFAWGRGTNGQLGIGE---SVDRNFPKIIE 376 (406)
T ss_dssp E-----CSSEEEEEETTSCEEEEECCTTSTTCSSS---CCCEEEEEECG
T ss_pred e-----CCCeEEEEeCCCCEEEecCCCCCccCCCC---CCCCcCCEEee
Confidence 9 99999999999999999999999999994 45566787765
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-66 Score=498.24 Aligned_cols=339 Identities=29% Similarity=0.495 Sum_probs=307.5
Q ss_pred CcceecccCCcccccCCC---CCCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecC
Q 016725 16 RPDIINERNGKRNLLGRE---VNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSP 92 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~---~~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p 92 (384)
...+|.||.|..||||.. +...|+++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.++ ......|
T Consensus 19 ~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~--~~~~~~p 96 (389)
T 3kci_A 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG--TESVSTP 96 (389)
T ss_dssp --CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS--SCCEEEE
T ss_pred CCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC--cCCccCC
Confidence 589999999999999964 34678888888888999999999999999999999999999999999997 5667788
Q ss_pred EEecCCCCC--cEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEE
Q 016725 93 QLVESLKNI--FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALA 170 (384)
Q Consensus 93 ~~i~~~~~~--~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~ 170 (384)
.+++.+.+. ++++|+||..|+++|+++|+||+||.|.+||||.+.......|+++.. +.+.+|++|+||..|+++|+
T Consensus 97 ~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~va~G~~hs~alt 175 (389)
T 3kci_A 97 TLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVT 175 (389)
T ss_dssp EECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEE
T ss_pred EEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeEEEEEeCcCeEEEEe
Confidence 888877655 457889999999999999999999999999999999888888988886 77889999999999999999
Q ss_pred eeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC--cceEEEeCCCCEEEEeCCCCCccCCCCC
Q 016725 171 CQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNE 248 (384)
Q Consensus 171 ~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 248 (384)
+ +| +||+||.|.+||||.+.......|..+..+ .+.+|++|+||. .|+++|+++|+||+||.|.++|||.+..
T Consensus 176 ~--~G-~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 176 A--AG-DLYTWGKGRYGRLGHSDSEDQLKPKLVEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp T--TS-CEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred C--CC-eEEEeCCCCCCCcCCCCCcccccceEeccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 8 99 999999999999999998888888888765 456899999995 8999999999999999999999999998
Q ss_pred CCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEE
Q 016725 249 ECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVV 328 (384)
Q Consensus 249 ~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~ 328 (384)
.....|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ......|+.++.+ ...+|+
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~P~~v~~l--~~~~v~ 320 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHVRRPRQVQGL--QGKKVI 320 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS--------CCCEEEEEECGGG--TTCCEE
T ss_pred CCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--------CccccCCeEeccC--CCCCEE
Confidence 888999999999888999999999999999999999999999999999997 5677889999877 568899
Q ss_pred EEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 329 QISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 329 ~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
+|+| |..|+++|+++|+||+||.|++||||.+ .......|++|+
T Consensus 321 ~ia~-----G~~h~~al~~~G~v~~wG~n~~GqLG~g---~~~~~~~P~~v~ 364 (389)
T 3kci_A 321 AIAT-----GSLHCVCCTEDGEVYTWGDNDEGQLGDG---TTNAIQRPRLVA 364 (389)
T ss_dssp EEEE-----CSSEEEEEETTCCEEEEECCTTSTTCSS---SCCCEEEEEECG
T ss_pred EEEe-----ccCeEEEECCCCCEEEeeCCCCCcCCCC---CCCCccCcEEec
Confidence 9999 9999999999999999999999999999 445566777764
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.1e-63 Score=480.62 Aligned_cols=336 Identities=24% Similarity=0.377 Sum_probs=289.6
Q ss_pred CcceecccCCcccccCCCC----CCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeec
Q 016725 16 RPDIINERNGKRNLLGREV----NGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTS 91 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~----~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~ 91 (384)
...+|.||.|..||||.++ ...|+++..+ .+|++|+||..|+++|+++|+||+||.|.+||||.++........
T Consensus 26 ~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~ 103 (413)
T 1a12_A 26 PGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV 103 (413)
T ss_dssp CBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGS
T ss_pred CCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccC
Confidence 4789999999999999875 3468888755 489999999999999999999999999999999998743345667
Q ss_pred CEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEc--CCCCcccCCCCCCc-ccccccccccCCCCeEEEEEeCCceeE
Q 016725 92 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPND-VEPHPLLGTLENIPVVQIAAGYCYLLA 168 (384)
Q Consensus 92 p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~-~~~~~i~~~~~~~~i~~i~~g~~~~~~ 168 (384)
|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...+|++|+||..|+++
T Consensus 104 P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v---~~~~~i~~ia~G~~hs~a 178 (413)
T 1a12_A 104 PGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV---QLDVPVVKVASGNDHLVM 178 (413)
T ss_dssp CEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE---CCSSCEEEEEECSSEEEE
T ss_pred CeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe---cCCCCEEEEEecCceEEE
Confidence 888853 3479999999999999999999999999 89999998875443 346666 346689999999999999
Q ss_pred EEeeCCCCEEEEEecCCCCcccCCCCCC-----------CCCCeEEeeccc---CCCCcEEEEcCCcceEEEeCCCCEEE
Q 016725 169 LACQPSGMAVYSVGCGLGGKLGHGSRTD-----------EKHPRLIEQFQL---LNLQPVVVAAGAWHAAVVGQDGRVCT 234 (384)
Q Consensus 169 l~~~~~G~~vy~~G~n~~gqlg~~~~~~-----------~~~p~~i~~~~~---~~~~i~~i~~g~~~~~~lt~~g~vy~ 234 (384)
|++ +| +||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+++|+++|+||+
T Consensus 179 lt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~ 255 (413)
T 1a12_A 179 LTA--DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 255 (413)
T ss_dssp EET--TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEE
T ss_pred EcC--CC-CEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEE
Confidence 998 99 99999999999999875422 135655543211 34679999999999999999999999
Q ss_pred EeCCCCCccCCCCCCCccCcEEeeecCC--CcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccc
Q 016725 235 WGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL 312 (384)
Q Consensus 235 wG~n~~gqlg~~~~~~~~~p~~i~~~~~--~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~ 312 (384)
||.|.++|||.+.......|+++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......
T Consensus 256 wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~-------~~~~~~ 328 (413)
T 1a12_A 256 FGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE-------GAEEKS 328 (413)
T ss_dssp EECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT-------TCCCEE
T ss_pred EeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCC-------CCcccc
Confidence 9999999999999888889999988876 6799999999999999999999999999999999985 245677
Q ss_pred cCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 313 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 313 ~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
.|+.++.+ .+|++|+| |..|+++|+++|+||+||.|++||||.+. .+....|++|+
T Consensus 329 ~P~~v~~l----~~v~~v~~-----G~~hs~alt~~G~v~~wG~n~~gqLG~g~---~~~~~~P~~v~ 384 (413)
T 1a12_A 329 IPTLISRL----PAVSSVAC-----GASVGYAVTKDGRVFAWGMGTNYQLGTGQ---DEDAWSPVEMM 384 (413)
T ss_dssp EEEECCSS----SSEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSS---CSCEEEEEECC
T ss_pred CCEEeccc----CceeEEEE-----CcceEEEEeCCCCEEEecCCCCCCCCCCC---CCCcccCeEcc
Confidence 88888776 28999999 99999999999999999999999999994 45567788776
No 4
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=6e-62 Score=471.76 Aligned_cols=309 Identities=33% Similarity=0.525 Sum_probs=284.5
Q ss_pred CcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCC-CEEEE
Q 016725 47 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG-RVYTF 125 (384)
Q Consensus 47 ~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G-~vy~~ 125 (384)
.+|++|+||..|+++|+++|+||+||.|.+||||.++ ......|.++..+.+.+|++|+||..|+++|+++| +||+|
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~--~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSS--CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCC--cccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 4899999999999999999999999999999999997 55568899998888889999999999999999986 99999
Q ss_pred EcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEee
Q 016725 126 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ 205 (384)
Q Consensus 126 G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~ 205 (384)
|.|.+||||.+.......|.++.. +.+.+|++|+||..|+++|++ +| +||+||.|.++|||.+.......|..+..
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~--~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTM--EG-EVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred cCCCCcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcC--CC-cEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 999999999999888888888876 778899999999999999998 99 99999999999999999888888888876
Q ss_pred cccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEE
Q 016725 206 FQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 285 (384)
Q Consensus 206 ~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy 285 (384)
+ .+.+|++|+||.+|+++|+++|+||+||.|.++|||.++......|+++..+.+.+|++|+||.+|+++|+++|+||
T Consensus 170 ~--~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~ 247 (406)
T 4d9s_A 170 F--EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 247 (406)
T ss_dssp G--TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEE
T ss_pred c--CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEE
Confidence 5 45689999999999999999999999999999999999988888999998888889999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCcc
Q 016725 286 SFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIE 365 (384)
Q Consensus 286 ~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~ 365 (384)
+||.|.+||||.++ ......|..++.+ .+.+|++|+| |..|+++|+++|+||+||.|.+||||.+
T Consensus 248 ~wG~n~~GqlG~g~--------~~~~~~p~~v~~~--~~~~v~~i~~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 248 TYGWSKYGQLGHGD--------LEDHLIPHKLEAL--SNSFISQISG-----GWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp EEECCTTSTTCSSS--------CCCEEEEEECGGG--TTSCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred EeeCCCCCCCCCCC--------CcCccccEEeccc--CCCCEEEEEe-----cCCEEEEEcCCCeEEEeeCCCCCCCCCC
Confidence 99999999999997 5677889988877 5678999999 9999999999999999999999999999
Q ss_pred ccCCcccCCCceEEee
Q 016725 366 LVNNQTERGNPERVDI 381 (384)
Q Consensus 366 ~~~~~~~~~~p~~i~~ 381 (384)
. ......|++|++
T Consensus 313 ~---~~~~~~p~~v~~ 325 (406)
T 4d9s_A 313 N---NLDQCSPVQVRF 325 (406)
T ss_dssp S---SSCEEEEEEECC
T ss_pred C---CCCCccCEEEec
Confidence 4 455566777764
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-61 Score=477.02 Aligned_cols=345 Identities=22% Similarity=0.348 Sum_probs=287.1
Q ss_pred CcceecccCCcccccCCCC------CCcceeeccc--CCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCce
Q 016725 16 RPDIINERNGKRNLLGREV------NGTPLYCRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK 87 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~------~~~P~~~~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~ 87 (384)
..++|.||.|..||||.++ ...|+++..+ ++.+|++|+||..|+++|+++|+||+||.|.+||||.+.....
T Consensus 28 ~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~ 107 (473)
T 3of7_A 28 PLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAK 107 (473)
T ss_dssp CCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---
T ss_pred CccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccc
Confidence 5899999999999999875 3467777766 5679999999999999999999999999999999999873221
Q ss_pred ---------------------eeecCEEecC--C----CCCcEEEEEeCCCeEEEEEcCCCEEEEEc--CCCCcccCCCC
Q 016725 88 ---------------------LVTSPQLVES--L----KNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTE 138 (384)
Q Consensus 88 ---------------------~~~~p~~i~~--~----~~~~i~~I~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~ 138 (384)
....|.+++. + .+.+|++|+||..|+++|+++|+||+||. +..||||.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~ 187 (473)
T 3of7_A 108 EQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187 (473)
T ss_dssp ------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTT
T ss_pred cccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCC
Confidence 1456888875 4 36789999999999999999999999998 67999998554
Q ss_pred C--CcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCC----CCCCeEEeecccCCCC
Q 016725 139 P--NDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD----EKHPRLIEQFQLLNLQ 212 (384)
Q Consensus 139 ~--~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~----~~~p~~i~~~~~~~~~ 212 (384)
. ....|.++.. +.+.+|++|+||..|+++|++ +| +||+||.|.++|||.+.... ...|..+.. .+
T Consensus 188 ~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~-----~~ 258 (473)
T 3of7_A 188 KIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDE--EG-MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL-----RH 258 (473)
T ss_dssp TBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC-----CS
T ss_pred CCccccCcEEccc-cCCCCEEEEEecCCeEEEEeC--CC-eEEEEeCCCCCCCCCCccccccccccCceecCC-----cc
Confidence 3 4567777776 777789999999999999998 99 99999999999999986543 345665532 47
Q ss_pred cEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCC----CccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEe
Q 016725 213 PVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE----CESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 288 (384)
Q Consensus 213 i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~----~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG 288 (384)
|++|+||.+|++||+++|+||+||.|.+||||.+... ....|+++..+.+.+|++|+||.+|+++|+++|+||+||
T Consensus 259 v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG 338 (473)
T 3of7_A 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCG 338 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred eEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999999998743 456788998888889999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC------CCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCC
Q 016725 289 CGESASLGHNAIADGQ------GNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQL 362 (384)
Q Consensus 289 ~n~~g~lg~~~~~~~~------~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~l 362 (384)
.|.+||||.+...... .........|..++.+ .+|++|+| |..|+++|+++|+||+||.|++|||
T Consensus 339 ~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~----~~v~~Ia~-----G~~hs~al~~~G~vy~wG~n~~GqL 409 (473)
T 3of7_A 339 RLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV----PKFKSVAA-----GSHHSVAVAQNGIAYSWGFGETYAV 409 (473)
T ss_dssp ECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS----CCEEEEEE-----CSSEEEEEETTSCEEEEECCTTCTT
T ss_pred CCCCCccCCCccccccccccccCCceeeeccCcccCCC----CceEEEEe-----CCCeEEEEeCCCcEEEeeCCCCCCC
Confidence 9999999987521000 0012233455555433 38999999 9999999999999999999999999
Q ss_pred CccccCCcccCCCceEEe
Q 016725 363 GIELVNNQTERGNPERVD 380 (384)
Q Consensus 363 g~~~~~~~~~~~~p~~i~ 380 (384)
|++. ..+....|++|+
T Consensus 410 G~g~--~~~~~~~P~~v~ 425 (473)
T 3of7_A 410 GLGP--FEDDTEVPTRIK 425 (473)
T ss_dssp CCCS--CCSCEEEEEECC
T ss_pred CCCC--CCccccCCeEec
Confidence 9994 245677788876
No 6
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3e-61 Score=469.76 Aligned_cols=332 Identities=22% Similarity=0.319 Sum_probs=285.2
Q ss_pred CcceecccCCcccccCCCCC----CcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeec
Q 016725 16 RPDIINERNGKRNLLGREVN----GTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTS 91 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~~----~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~ 91 (384)
...+|.||.|..||||.++. ..|.++..+. +|++|+||..|+++|+++|+||+||.|.+||||.++........
T Consensus 42 ~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~ 119 (423)
T 3mvd_K 42 LGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESK 119 (423)
T ss_dssp CEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSS
T ss_pred CCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccC
Confidence 46899999999999998643 4688888777 68999999999999999999999999999999999754445678
Q ss_pred CEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEc--CCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEE
Q 016725 92 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLAL 169 (384)
Q Consensus 92 p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l 169 (384)
|.++... .+|++|+||..|+++|+++|+||+||. |.+||||.+.......|.++ +.+.+|++|+||..|+++|
T Consensus 120 P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~---~~~~~i~~va~G~~hs~al 194 (423)
T 3mvd_K 120 PDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL---MEGTVCCSIASGADHLVIL 194 (423)
T ss_dssp CEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES---STTCCEEEEEECSSEEEEE
T ss_pred CeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe---cCCCcEEEEecCCCeEEEE
Confidence 8888753 479999999999999999999999999 99999999887776666655 4577899999999999999
Q ss_pred EeeCCCCEEEEEecCCCCcccCCCCC-----------CCCCCeEEeecccCCCCcEEEEcCCcceEEE-eCCCCEEEEeC
Q 016725 170 ACQPSGMAVYSVGCGLGGKLGHGSRT-----------DEKHPRLIEQFQLLNLQPVVVAAGAWHAAVV-GQDGRVCTWGW 237 (384)
Q Consensus 170 ~~~~~G~~vy~~G~n~~gqlg~~~~~-----------~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~l-t~~g~vy~wG~ 237 (384)
++ +| +||+||.|.++|||.+... ....|..+... ...+|++|+||.+|++++ +++|+||+||.
T Consensus 195 t~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~ 269 (423)
T 3mvd_K 195 TT--AG-KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIWATNYCTFMRESQTQVIWATGL 269 (423)
T ss_dssp ET--TS-CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred ec--CC-eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEEECCcEEEEEECCCCeEEEEeC
Confidence 98 99 9999999999999998643 34578887753 445799999999999999 69999999999
Q ss_pred CCCCccCCCCCCC--ccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCe
Q 016725 238 GRYGCLGHGNEEC--ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQ 315 (384)
Q Consensus 238 n~~gqlg~~~~~~--~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~ 315 (384)
|.++|||.+.... ...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+. .......|.
T Consensus 270 n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~-------~~~~~~~p~ 339 (423)
T 3mvd_K 270 NNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD-------VKDVVEKPT 339 (423)
T ss_dssp CTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSS-------CCSCEEEEE
T ss_pred CCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCC-------ccccccCce
Confidence 9999999965433 34455544 35799999999999999999999999999999999997 234456788
Q ss_pred eeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCCCCCccccCCcccCCCceEEe
Q 016725 316 LVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 380 (384)
Q Consensus 316 ~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg~~~~~~~~~~~~p~~i~ 380 (384)
.++.+. . +|++|+| |..|+++|+++|+||+||.|++||||.+. ......|++|+
T Consensus 340 ~v~~l~--~-~v~~ia~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~ 393 (423)
T 3mvd_K 340 IVKKLT--E-KIVSVGC-----GEVCSYAVTIDGKLYSWGSGVNNQLGVGD---GDDELEPIVVV 393 (423)
T ss_dssp ECTTCC--S-CEEEEEE-----ETTEEEEEETTSCEEEEECCTTSCSSSSS---SCCEEEEEECC
T ss_pred EeccCC--C-CEEEEEc-----CCCeEEEEcCCCCEEEECCCCCCCCCCCC---CCCcccCeEEe
Confidence 887663 2 8999999 99999999999999999999999999994 45566788886
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-58 Score=446.17 Aligned_cols=311 Identities=31% Similarity=0.494 Sum_probs=283.9
Q ss_pred CcceecccCCcccccCCCC---CCcceeecccCCCc--EEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeee
Q 016725 16 RPDIINERNGKRNLLGREV---NGTPLYCRSLQGIR--IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVT 90 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~---~~~P~~~~~~~~~~--i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~ 90 (384)
...+|.||.|..||||.++ ...|.++..+.+.+ +++|+||..|+++|+++|+||+||.|.+||||.++ .....
T Consensus 71 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~--~~~~~ 148 (389)
T 3kci_A 71 DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN--RSPCD 148 (389)
T ss_dssp TSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS--CCCEE
T ss_pred CCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC--CccCc
Confidence 5789999999999999864 45788888877654 47889999999999999999999999999999997 56667
Q ss_pred cCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC--CceeE
Q 016725 91 SPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY--CYLLA 168 (384)
Q Consensus 91 ~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~--~~~~~ 168 (384)
.|..++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++.. +.+.+|++|+||. .|+++
T Consensus 149 ~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~-~~~~~v~~ia~G~g~~~t~~ 227 (389)
T 3kci_A 149 RPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQGHRVVDIACGSGDAQTLC 227 (389)
T ss_dssp EEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEECCSSCEEEE
T ss_pred CCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc-cCCCeEEEEEEcCCCcEEEE
Confidence 89999988888999999999999999999999999999999999999888888988876 7788999999985 89999
Q ss_pred EEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCC
Q 016725 169 LACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNE 248 (384)
Q Consensus 169 l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 248 (384)
|++ +| +||+||.|.++|||.+.......|.++..+ .+.+|++|+||..|+++|+++|+||+||.|.++|||.+..
T Consensus 228 l~~--~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 228 LTD--DD-TVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp EET--TT-EEEEEECCGGGTTSSSSCCCEEEEEECGGG--TTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred Ecc--CC-EEEEEeCCCCCCCCCCCCCCccccEEeccc--CCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence 998 99 999999999999999988888888888765 4567999999999999999999999999999999999999
Q ss_pred CCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEE
Q 016725 249 ECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVV 328 (384)
Q Consensus 249 ~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~ 328 (384)
.....|++++.+.+.+|++|+||.+|+++++++|+||+||.|.+||||.++ ......|+.++.+ ...+|+
T Consensus 303 ~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~--------~~~~~~P~~v~~~--~~~~v~ 372 (389)
T 3kci_A 303 DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT--------TNAIQRPRLVAAL--QGKKVN 372 (389)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS--------CCCEEEEEECGGG--TTSCCC
T ss_pred ccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCC--------CCCccCcEEeccc--CCCCEE
Confidence 889999999999888999999999999999999999999999999999997 6677889999877 567899
Q ss_pred EEeeeccccccceEEEEeCCC
Q 016725 329 QISLTNSIYWNAHTFALTESG 349 (384)
Q Consensus 329 ~i~~~~~~~G~~~~~~lt~~g 349 (384)
+|+| |..|+++|++++
T Consensus 373 ~va~-----G~~ht~al~~~~ 388 (389)
T 3kci_A 373 RVAC-----GSAHTLAWSTSK 388 (389)
T ss_dssp EEEE-----ETTEEEEECC--
T ss_pred EEEe-----cCCcEEEEecCC
Confidence 9999 999999998764
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-56 Score=434.15 Aligned_cols=312 Identities=24% Similarity=0.365 Sum_probs=267.2
Q ss_pred CcceecccCCcccccCCCC-----CCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEec--CCCCCcccCCCCcee
Q 016725 16 RPDIINERNGKRNLLGREV-----NGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKL 88 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~-----~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~--n~~gqlG~~~~~~~~ 88 (384)
...+|.||.|..||||... ...|.++.. . .+|++|+||..|+++|+++|+||+||. |.+||||.++. ...
T Consensus 77 ~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~-~~~ 153 (413)
T 1a12_A 77 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEP-MKK 153 (413)
T ss_dssp TSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBB-TBC
T ss_pred CCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCc-ccc
Confidence 5789999999999999754 356888853 3 389999999999999999999999999 99999999863 233
Q ss_pred eecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCC-----------ccccccccccc----CC
Q 016725 89 VTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN-----------DVEPHPLLGTL----EN 153 (384)
Q Consensus 89 ~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-----------~~~~~~i~~~~----~~ 153 (384)
...|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|+.+..+. ..
T Consensus 154 ~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~ 231 (413)
T 1a12_A 154 SMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231 (413)
T ss_dssp EEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSB
T ss_pred ccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCC
Confidence 3457776 3456899999999999999999999999999999999875421 13444443311 35
Q ss_pred CCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEE
Q 016725 154 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVC 233 (384)
Q Consensus 154 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy 233 (384)
.+|++|+||..|+++|++ +| +||+||.|.++|||.+.......|..+..+.....+|++|+||.+|+++|+++|+||
T Consensus 232 ~~i~~ia~G~~hs~alt~--~G-~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~ 308 (413)
T 1a12_A 232 VRFQDAFCGAYFTFAISH--EG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAY 308 (413)
T ss_dssp CCEEEEEEETTEEEEEET--TC-CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred ccEEEEEeCCCEEEEEeC--CC-CEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEE
Confidence 679999999999999998 99 999999999999999988888888888876543467999999999999999999999
Q ss_pred EEeCCCCCccCCC-CCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccc
Q 016725 234 TWGWGRYGCLGHG-NEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL 312 (384)
Q Consensus 234 ~wG~n~~gqlg~~-~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~ 312 (384)
+||.|.+||||.+ +......|++++.+. +|++|+||.+|+++++++|+||+||.|.+||||.++ ..+..
T Consensus 309 ~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~--------~~~~~ 378 (413)
T 1a12_A 309 SLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ--------DEDAW 378 (413)
T ss_dssp EEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------CSCEE
T ss_pred EeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCC--------CCCcc
Confidence 9999999999998 466677899988765 799999999999999999999999999999999997 56778
Q ss_pred cCeeeecccccCccEEEEeeeccccccceEEEEeCCCC
Q 016725 313 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350 (384)
Q Consensus 313 ~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~ 350 (384)
.|++++.....+.+|++|+| |..|+++|+++|+
T Consensus 379 ~P~~v~~~~~~~~~v~~v~~-----G~~ht~~l~~~g~ 411 (413)
T 1a12_A 379 SPVEMMGKQLENRVVLSVSS-----GGQHTVLLVKDKE 411 (413)
T ss_dssp EEEECCSTTTTTEEEEEEEE-----CSSEEEEEEEECS
T ss_pred cCeEccccccCCCeEEEEee-----CCCcEEEEEecCC
Confidence 89888754335678999999 9999999999886
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=9.9e-55 Score=423.70 Aligned_cols=308 Identities=22% Similarity=0.330 Sum_probs=262.0
Q ss_pred CcceecccCCcccccCCCC-----CCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEec--CCCCCcccCCCCcee
Q 016725 16 RPDIINERNGKRNLLGREV-----NGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKL 88 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~-----~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~--n~~gqlG~~~~~~~~ 88 (384)
...+|.||.|..||||... ...|.++.... +|++|+||..|+++|+++|+||+||. |.+||||.+. ...
T Consensus 93 ~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~--~~~ 168 (423)
T 3mvd_K 93 SGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTI--DGN 168 (423)
T ss_dssp TSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBT--TBC
T ss_pred CCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCC--CCC
Confidence 5789999999999999864 46788887544 89999999999999999999999999 9999999987 334
Q ss_pred eecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCC-----------CcccccccccccCCCCeE
Q 016725 89 VTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEP-----------NDVEPHPLLGTLENIPVV 157 (384)
Q Consensus 89 ~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~-----------~~~~~~~i~~~~~~~~i~ 157 (384)
...|.. .+...+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|.++.. ....+|+
T Consensus 169 ~~~p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~-~~~~~v~ 245 (423)
T 3mvd_K 169 KRTPID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII-TRAKPFE 245 (423)
T ss_dssp EEEEEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC-TTCCCEE
T ss_pred CceeeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee-cCCccEE
Confidence 444444 4557789999999999999999999999999999999987653 3456666664 5567899
Q ss_pred EEEEeCCceeEEE-eeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEe
Q 016725 158 QIAAGYCYLLALA-CQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWG 236 (384)
Q Consensus 158 ~i~~g~~~~~~l~-~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG 236 (384)
+|+||..|++++. . +| +||+||.|.++|||.+.......+.++.. ...+|++|+||..|+++|+++|+||+||
T Consensus 246 ~i~~g~~~~~~~~~~--~g-~v~~wG~n~~gqlg~~~~~~~~~~~p~~~---~~~~v~~ia~G~~ht~alt~~G~v~~wG 319 (423)
T 3mvd_K 246 AIWATNYCTFMRESQ--TQ-VIWATGLNNFKQLAHETKGKEFALTPIKT---ELKDIRHIAGGQHHTVILTTDLKCSVVG 319 (423)
T ss_dssp EEEEETTEEEEEETT--TC-CEEEEEECTTCTTSSCCTTCSEEEEEEEE---CCCSEEEEEECSSEEEEEETTCCEEEEE
T ss_pred EEEECCcEEEEEECC--CC-eEEEEeCCCCCcCCCCCCCCceeeeeEEc---CCCCeEEEEcccCeEEEEeCCCcEEEEE
Confidence 9999999999995 5 88 99999999999999966544443333332 1347999999999999999999999999
Q ss_pred CCCCCccCCCCCCC-ccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCe
Q 016725 237 WGRYGCLGHGNEEC-ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQ 315 (384)
Q Consensus 237 ~n~~gqlg~~~~~~-~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~ 315 (384)
.|.+||||.++... ...|++++.+.+ +|++|+||.+|++|++++|+||+||.|.+||||+++ ..+...|+
T Consensus 320 ~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~P~ 390 (423)
T 3mvd_K 320 RPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD--------GDDELEPI 390 (423)
T ss_dssp CCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSS--------SCCEEEEE
T ss_pred CCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCC--------CCCcccCe
Confidence 99999999998554 567888887776 899999999999999999999999999999999997 66778899
Q ss_pred eeecccccCccEEEEeeeccccccceEEEEeCCCC
Q 016725 316 LVTSLKQVNERVVQISLTNSIYWNAHTFALTESGK 350 (384)
Q Consensus 316 ~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~ 350 (384)
++........+|++|+| |..|+++|+++++
T Consensus 391 ~v~~~~~~~~~v~~va~-----G~~ht~~l~~~~k 420 (423)
T 3mvd_K 391 VVVSKNTQGKHMLLASG-----GGQHAIFLVKADK 420 (423)
T ss_dssp ECCSTTTTTCCEEEEEE-----CSSEEEEEEECC-
T ss_pred EEeCcccCCCEEEEEEE-----CCCcEEEEEcccc
Confidence 99864336788999999 9999999998874
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-54 Score=427.87 Aligned_cols=309 Identities=21% Similarity=0.304 Sum_probs=262.2
Q ss_pred CcceecccCCcccccCCCC--------------------------CCcceeecc--c----CCCcEEEEEeCCCeeEEEE
Q 016725 16 RPDIINERNGKRNLLGREV--------------------------NGTPLYCRS--L----QGIRIIQAAAGAGRTMLIS 63 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~--------------------------~~~P~~~~~--~----~~~~i~~i~~G~~~~~~lt 63 (384)
...+|.||.|..||||... ...|.++.. + ++.+|++|+||..|+++|+
T Consensus 85 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt 164 (473)
T 3of7_A 85 ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF 164 (473)
T ss_dssp TCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE
T ss_pred CCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe
Confidence 5789999999999999764 235777765 4 3679999999999999999
Q ss_pred cCCCEEEEec--CCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCC-
Q 016725 64 DAGQVYAFGK--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN- 140 (384)
Q Consensus 64 ~~g~vy~~G~--n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~- 140 (384)
++|+||+||. +.+||||.+.........|..++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 165 ~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 244 (473)
T 3of7_A 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244 (473)
T ss_dssp TTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG
T ss_pred CCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc
Confidence 9999999998 6899999976555677889999998888999999999999999999999999999999999886543
Q ss_pred ---cccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCC----CCCCeEEeecccCCCCc
Q 016725 141 ---DVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD----EKHPRLIEQFQLLNLQP 213 (384)
Q Consensus 141 ---~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~----~~~p~~i~~~~~~~~~i 213 (384)
...|.++. -.+|++|+||..|+++|+. +| +||+||.|.+||||.+.... ...|..+..+ .+.+|
T Consensus 245 ~~~~~~p~~~~----~~~v~~Ia~G~~hs~alt~--~G-~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~--~~~~i 315 (473)
T 3of7_A 245 RLKTLDPRPFG----LRHVKYIASGENHCFALTK--DN-KLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP--DNVVI 315 (473)
T ss_dssp TTTTCSCEECS----CCSEEEEEECSSEEEEEET--TS-CEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC--TTCCE
T ss_pred cccccCceecC----CcceEEEecCCCeEEEEec--CC-CEEEeCCCCCCCcCCCCcccCCceeecccccccc--CCccE
Confidence 23444432 2569999999999999998 99 99999999999999987542 3456666643 34689
Q ss_pred EEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCC--------------CccCcEEeeecCCCcEEEEEcCCceEEEEe
Q 016725 214 VVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE--------------CESVPKVVQALNDVKAIHVATGDYTTFVVS 279 (384)
Q Consensus 214 ~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~--------------~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 279 (384)
++|+||..|+++|+++|+||+||.|.++|||.+... ....|.+++.+. +|++|+||.+|++||+
T Consensus 316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~ 393 (473)
T 3of7_A 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVA 393 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEE
T ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEe
Confidence 999999999999999999999999999999986521 123455554332 7999999999999999
Q ss_pred cCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeC
Q 016725 280 EDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTE 347 (384)
Q Consensus 280 ~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~ 347 (384)
++|+||+||.|.+||||+++ ...+...|++|+.+.....+|++|+| |..|++++..
T Consensus 394 ~~G~vy~wG~n~~GqLG~g~-------~~~~~~~P~~v~~~~~~~~~v~~v~c-----G~~~s~~~~~ 449 (473)
T 3of7_A 394 QNGIAYSWGFGETYAVGLGP-------FEDDTEVPTRIKNTATQDHNIILVGC-----GGQFSVSGGV 449 (473)
T ss_dssp TTSCEEEEECCTTCTTCCCS-------CCSCEEEEEECCCTTTTTEEEEEEEE-----CSSEEEEEEE
T ss_pred CCCcEEEeeCCCCCCCCCCC-------CCccccCCeEecccccCCCeEEEEee-----CCCeEEEEEe
Confidence 99999999999999999986 35678899999866546789999999 9999999965
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.4e-48 Score=359.17 Aligned_cols=251 Identities=20% Similarity=0.247 Sum_probs=211.1
Q ss_pred ceecccCCcccccCCCCCCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecC
Q 016725 18 DIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVES 97 (384)
Q Consensus 18 ~~~~~g~~~~g~~g~~~~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~ 97 (384)
++|.||.|...+.. |.++..+. +|++|+||..|+++|+ ||+||+||.|.+||||... .
T Consensus 3 ~v~~WG~n~~~~~~------~~p~~~~~--~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~----------~--- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA------TVPAEAQS--GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA----------A--- 60 (282)
T ss_dssp EEEEECSCCTTSTT------CCCGGGSS--SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG----------G---
T ss_pred EEEEeCCCCCcCcc------cCCccccC--CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc----------c---
Confidence 58899977533332 33444444 7999999999999998 9999999999999999532 1
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCE
Q 016725 98 LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 177 (384)
Q Consensus 98 ~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~ 177 (384)
...+|++|+||..|+++|+ ||+||+||.|.+||||. |.++ ..+|++|+||..|+++|+ +| +
T Consensus 61 -~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~-----~~~v~~ia~G~~hs~al~---~G-~ 121 (282)
T 3qhy_B 61 -TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEA-----RSGVDAIAAGAWASYALK---DG-K 121 (282)
T ss_dssp -GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGG-----SSSEEEEEEETTEEEEEE---TT-E
T ss_pred -CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------Cccc-----CCCeEEEECcCCEEEEEe---CC-e
Confidence 1236999999999999996 99999999999999984 3333 236999999999999998 89 9
Q ss_pred EEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEe
Q 016725 178 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV 257 (384)
Q Consensus 178 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i 257 (384)
||+||.|.++||+... ....+|++|+||..|+++++ +|+||+||.|.++|||. |.++
T Consensus 122 v~~wG~n~~gqlg~~~--------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~ 178 (282)
T 3qhy_B 122 VIAWGDDSDGQTTVPA--------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA 178 (282)
T ss_dssp EEEEECCTTSTTSCCG--------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG
T ss_pred EEEecCCCCCcCCCCc--------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec
Confidence 9999999999997421 12346899999999999999 89999999999999984 2222
Q ss_pred eecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeecccc
Q 016725 258 QALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIY 337 (384)
Q Consensus 258 ~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~ 337 (384)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+. . ...+|++|+|
T Consensus 179 ----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~--------~--------------~~~~v~~i~~----- 226 (282)
T 3qhy_B 179 ----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT--------E--------------ALSGVSAIAS----- 226 (282)
T ss_dssp ----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--------G--------------GGSSCCEEEE-----
T ss_pred ----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--------c--------------cCCCceEEEc-----
Confidence 35799999999999999 89999999999999998664 0 1246899999
Q ss_pred ccceEEEEeCCCCEEEEeCCCCCCCCcc
Q 016725 338 WNAHTFALTESGKLYAFGAGDKGQLGIE 365 (384)
Q Consensus 338 G~~~~~~lt~~g~l~~~G~n~~g~lg~~ 365 (384)
|..|+++|+ +|+||+||.|+++|++..
T Consensus 227 G~~h~~al~-~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 227 GEWYSLALK-NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp CSSCEEEEE-TTEEEEESTTCCCCGGGS
T ss_pred CCCEEEEEE-CCEEEEecCCCCccccCC
Confidence 999999999 999999999999999975
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.4e-44 Score=330.91 Aligned_cols=236 Identities=21% Similarity=0.262 Sum_probs=196.3
Q ss_pred CcceecccCCcccccCCCCCCcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEe
Q 016725 16 RPDIINERNGKRNLLGREVNGTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV 95 (384)
Q Consensus 16 ~~~~~~~g~~~~g~~g~~~~~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i 95 (384)
...+|.||.|..||+|. |.+ .+ .+|++|+||..|+++|+ ||+||+||.|.+||||... .+
T Consensus 41 ~G~v~~wG~n~~Gqlg~-----p~~--~~--~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~----------~~ 100 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM-----PAA--TQ--SGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPA----------EA 100 (282)
T ss_dssp TTEEEEEECCSSSTTSC-----CGG--GG--SCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCG----------GG
T ss_pred CCEEEEEeCCCCCCCCC-----Ccc--CC--CCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCc----------cc
Confidence 68999999999999995 222 22 37999999999999996 9999999999999998632 22
Q ss_pred cCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCC
Q 016725 96 ESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSG 175 (384)
Q Consensus 96 ~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G 175 (384)
..+|++|+||..|+++|+ +|+||+||.|.+||||.. .+ ...+|++|+||..|+++|+ +|
T Consensus 101 ----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~~-----~~~~i~~i~~G~~~~~~l~---~G 159 (282)
T 3qhy_B 101 ----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------AE-----AQSGVTALDGGVYTALAVK---NG 159 (282)
T ss_dssp ----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------GG-----GGSSEEEEEECSSEEEEEE---TT
T ss_pred ----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------cc-----CCCCeEEEEcccCEEEEEE---CC
Confidence 236999999999999999 999999999999999732 11 1345999999999999987 88
Q ss_pred CEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcE
Q 016725 176 MAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPK 255 (384)
Q Consensus 176 ~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~ 255 (384)
+||+||.|.++||+. |.. ...+|++|+||.+|+++| ++|+||+||.|.++|||.+..
T Consensus 160 -~v~~wG~n~~gqlg~--------p~~------~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~------- 216 (282)
T 3qhy_B 160 -GVIAWGDNYFGQTTV--------PAE------AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------- 216 (282)
T ss_dssp -EEEEEECCTTSTTSC--------CGG------GGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG-------
T ss_pred -EEEEecCCCCCCCCC--------cee------cCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc-------
Confidence 999999999999973 221 234799999999999999 899999999999999986321
Q ss_pred EeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeecc
Q 016725 256 VVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNS 335 (384)
Q Consensus 256 ~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~ 335 (384)
. ..+|++|+||.+|+++++ +|+||+||.|.++|++.. ..|++|++
T Consensus 217 ---~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~--------------------------~~v~~iaa--- 261 (282)
T 3qhy_B 217 ---A--LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ--------------------------SGVSSIEA--- 261 (282)
T ss_dssp ---G--GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS--------------------------SCEEEEEE---
T ss_pred ---c--CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC--------------------------CCcEEEEE---
Confidence 1 236899999999999999 999999999998876532 25899999
Q ss_pred ccccceEEEEeCCCCEE
Q 016725 336 IYWNAHTFALTESGKLY 352 (384)
Q Consensus 336 ~~G~~~~~~lt~~g~l~ 352 (384)
|..|+++|+++++.+
T Consensus 262 --G~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 262 --GPNAAYALKGGSGSG 276 (282)
T ss_dssp --CSSCEEEEEC-----
T ss_pred --CcCeEEEEecCCCCC
Confidence 999999999988654
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.02 E-value=0.23 Score=46.85 Aligned_cols=244 Identities=7% Similarity=0.031 Sum_probs=136.5
Q ss_pred CCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEE
Q 016725 46 GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 125 (384)
Q Consensus 46 ~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~ 125 (384)
...|..++......+.-..||.|..|-..... .. ..+. .....|..++......+.-..||.|..|
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~----------~~---~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGE----------ML---NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCC----------EE---EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCc----------EE---EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence 34678888766667777788999999654311 00 0111 1234588888877778888899999999
Q ss_pred EcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEee
Q 016725 126 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ 205 (384)
Q Consensus 126 G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~ 205 (384)
-...... ........ -....|..++....+.+.-.. +| .|+.|-.... ..+..
T Consensus 239 d~~~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~--dg-~i~vwd~~~~--------------~~~~~ 291 (435)
T 1p22_A 239 DMASPTD---------ITLRRVLV-GHRAAVNVVDFDDKYIVSASG--DR-TIKVWNTSTC--------------EFVRT 291 (435)
T ss_dssp ECSSSSC---------CEEEEEEC-CCSSCEEEEEEETTEEEEEET--TS-EEEEEETTTC--------------CEEEE
T ss_pred eCCCCCC---------ceeeeEec-CCCCcEEEEEeCCCEEEEEeC--CC-eEEEEECCcC--------------cEEEE
Confidence 6543211 11111111 223457777775555555554 88 9999954321 12222
Q ss_pred cccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEE
Q 016725 206 FQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 285 (384)
Q Consensus 206 ~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy 285 (384)
+......+..++......++-..||.|+.|-...... ...+. .....|..+.......+.-..||.|.
T Consensus 292 ~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-----------LRVLE-GHEELVRCIRFDNKRIVSGAYDGKIK 359 (435)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE-----------EEEEe-CCcCcEEEEEecCCEEEEEeCCCcEE
Confidence 2223345666666566667778899999997543110 11121 12335777777666677778899999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCC
Q 016725 286 SFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 360 (384)
Q Consensus 286 ~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g 360 (384)
.|-........ .......+..+......|..++. .....+.-..||.|..|-..+..
T Consensus 360 vwd~~~~~~~~-------------~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 360 VWDLVAALDPR-------------APAGTLCLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEHHHHTSTT-------------SCTTTTEEEEECCCSSCCCCEEE-----CSSCEEECCSSSEEEEEC-----
T ss_pred EEECCCCCCcc-------------ccccchheeeccCCCCCeEEEEe-----CCCEEEEEeCCCEEEEEECCCCC
Confidence 99743211000 00011122333334455666665 45555556778999999776544
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.55 E-value=0.54 Score=44.28 Aligned_cols=229 Identities=9% Similarity=0.018 Sum_probs=133.4
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEc
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 127 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~ 127 (384)
.|..++......+.-..||.|..|-..... .. ..+.. ....|..++......+.-..||.|..|-.
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~----------~~---~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLE----------CK---RILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCC----------EE---EEECC-CSSCEEEEECCSSEEEEEETTSCEEEEES
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCe----------EE---EEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEEC
Confidence 577777777777777889999999653311 00 11111 23358888876667777788999999965
Q ss_pred CCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecc
Q 016725 128 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ 207 (384)
Q Consensus 128 n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 207 (384)
..... ...+. .....|..++......+.-.. +| .|+.|-.... ........+.
T Consensus 201 ~~~~~-----------~~~~~--~h~~~v~~l~~~~~~l~s~s~--dg-~i~vwd~~~~-----------~~~~~~~~~~ 253 (435)
T 1p22_A 201 NTGEM-----------LNTLI--HHCEAVLHLRFNNGMMVTCSK--DR-SIAVWDMASP-----------TDITLRRVLV 253 (435)
T ss_dssp SSCCE-----------EEEEC--CCCSCEEEEECCTTEEEEEET--TS-CEEEEECSSS-----------SCCEEEEEEC
T ss_pred CCCcE-----------EEEEc--CCCCcEEEEEEcCCEEEEeeC--CC-cEEEEeCCCC-----------CCceeeeEec
Confidence 43211 11111 223457777776554444444 88 9999954321 1111112222
Q ss_pred cCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEE
Q 016725 208 LLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 287 (384)
Q Consensus 208 ~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 287 (384)
.....|..++....+.++-..||.|.+|-..... ....+.. ....|..+.......++-..||.|..|
T Consensus 254 ~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 2344566666656666777789999999754321 0111221 223566666666777777889999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeC
Q 016725 288 GCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 356 (384)
Q Consensus 288 G~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~ 356 (384)
-.... ..+..+......|..++. .....+.-..+|.|..|-.
T Consensus 322 d~~~~----------------------~~~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 322 DIECG----------------------ACLRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ETTTC----------------------CEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEEH
T ss_pred ECCCC----------------------CEEEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEEEC
Confidence 75421 112222223455666666 5566666678898888864
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.49 E-value=0.58 Score=44.09 Aligned_cols=232 Identities=9% Similarity=-0.003 Sum_probs=131.5
Q ss_pred CcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEE
Q 016725 47 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFS 126 (384)
Q Consensus 47 ~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G 126 (384)
..|..++......+.-..||.|+.|-.... ... ..+.. ....|..++......+.-..||.|+.|-
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~----------~~~---~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd 225 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETG----------ECI---HTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWD 225 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTT----------EEE---EEECC-CSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCcC----------cEE---EEECC-CCCcEEEEEecCCEEEEEeCCCEEEEEE
Confidence 356667666667777778899999865431 111 11111 2335777777777778888899999986
Q ss_pred cCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeec
Q 016725 127 WGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF 206 (384)
Q Consensus 127 ~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~ 206 (384)
...... ...+. .....|..++......+.-.. +| .|+.|-... ...+..+
T Consensus 226 ~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~l~~~~~--dg-~i~iwd~~~--------------~~~~~~~ 275 (445)
T 2ovr_B 226 IETGQC-----------LHVLM--GHVAAVRCVQYDGRRVVSGAY--DF-MVKVWDPET--------------ETCLHTL 275 (445)
T ss_dssp SSSCCE-----------EEEEE--CCSSCEEEEEECSSCEEEEET--TS-CEEEEEGGG--------------TEEEEEE
T ss_pred CCCCcE-----------EEEEc--CCcccEEEEEECCCEEEEEcC--CC-EEEEEECCC--------------CcEeEEe
Confidence 543211 01111 123346667664444444444 78 999995422 2233333
Q ss_pred ccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEE
Q 016725 207 QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 286 (384)
Q Consensus 207 ~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 286 (384)
......+..+.....+.+.-..||.+++|-...... ...+. .....+..+.......++-..+|.|+.
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~v 343 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKI 343 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEE
Confidence 323445667776666677778899999997543211 01111 112345566666667777788999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCC
Q 016725 287 FGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 358 (384)
Q Consensus 287 wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~ 358 (384)
|-..... ....+.........|..++. .....+.-..+|.|..|-..+
T Consensus 344 wd~~~~~-------------------~~~~~~~~~~~~~~v~~~~~-----~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 344 WDIKTGQ-------------------CLQTLQGPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EETTTCC-------------------EEEEECSTTSCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCc-------------------EEEEEccCCCCCCCEEEEEE-----CCCEEEEEeCCCeEEEEECCC
Confidence 9753211 01111111113345666665 555555556788888887644
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.06 E-value=0.99 Score=42.46 Aligned_cols=225 Identities=8% Similarity=-0.028 Sum_probs=129.7
Q ss_pred EEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcC
Q 016725 49 IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG 128 (384)
Q Consensus 49 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n 128 (384)
+..++......+.-..||.|..|-...... .. .+.. ....|..++......+.-..||.|+.|-..
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~----------~~---~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKC----------LR---TLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCE----------EE---ECCC-CSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcE----------EE---EEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEECC
Confidence 445555566667777889999997543211 00 1111 133477777767777778889999999654
Q ss_pred CCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeeccc
Q 016725 129 NDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL 208 (384)
Q Consensus 129 ~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 208 (384)
.... ...+. .....|..++......+.-.. +| .|+.|-.... ..+..+..
T Consensus 188 ~~~~-----------~~~~~--~h~~~v~~~~~~~~~l~s~s~--dg-~i~~wd~~~~--------------~~~~~~~~ 237 (445)
T 2ovr_B 188 TGEC-----------IHTLY--GHTSTVRCMHLHEKRVVSGSR--DA-TLRVWDIETG--------------QCLHVLMG 237 (445)
T ss_dssp TTEE-----------EEEEC--CCSSCEEEEEEETTEEEEEET--TS-EEEEEESSSC--------------CEEEEEEC
T ss_pred cCcE-----------EEEEC--CCCCcEEEEEecCCEEEEEeC--CC-EEEEEECCCC--------------cEEEEEcC
Confidence 3211 11111 223457777776665555554 88 9999964321 12222222
Q ss_pred CCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec--CCCcEEEEEcCCceEEEEecCCCEEE
Q 016725 209 LNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDYTTFVVSEDGDVYS 286 (384)
Q Consensus 209 ~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~~~lt~~g~vy~ 286 (384)
....+..++......++-..+|.++.|-.... ..+..+ ....|..+.....+.+.-..+|.|+.
T Consensus 238 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303 (445)
T ss_dssp CSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEE
Confidence 34456666665666677788999999964321 112111 22357777776667777788999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCC
Q 016725 287 FGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 358 (384)
Q Consensus 287 wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~ 358 (384)
|-.... ..+..+......+..+.. .....+.-..+|.+..|-..+
T Consensus 304 ~d~~~~----------------------~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 304 WDVETG----------------------NCIHTLTGHQSLTSGMEL-----KDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp EETTTC----------------------CEEEEECCCCSCEEEEEE-----ETTEEEEEETTSCEEEEETTT
T ss_pred EECCCC----------------------CEEEEEcCCcccEEEEEE-----eCCEEEEEeCCCeEEEEECCC
Confidence 975421 111112223344555555 445555567788888887643
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.96 E-value=0.014 Score=50.52 Aligned_cols=71 Identities=23% Similarity=0.195 Sum_probs=58.5
Q ss_pred CcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCC
Q 016725 212 QPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 212 ~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~ 291 (384)
.+..|+.-+.|.+++--++++|.+|+++.||+-.... .+ +...+.+|.++++-+..-+.+-.||+..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------ag-Pfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------AG-PYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------GC-CEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC------------cc-hHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 5678888899999999999999999999999954322 12 5788999999999999999999999876
Q ss_pred CCCC
Q 016725 292 SASL 295 (384)
Q Consensus 292 ~g~l 295 (384)
...|
T Consensus 377 DNSL 380 (400)
T 4gbf_A 377 DNSL 380 (400)
T ss_dssp TSTT
T ss_pred Ccce
Confidence 5443
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.68 E-value=0.025 Score=49.03 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=65.1
Q ss_pred CcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEE
Q 016725 47 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFS 126 (384)
Q Consensus 47 ~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G 126 (384)
..|-.|+....|.+++-.|++|+.||+++.||+-... . ..++.++.+|..+++-+..-..+-.||
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~--------------t-agPfla~~AG~~fTVTVn~~nyv~FWG 373 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD--------------H-AGPYIQLAAGHNFTVTVNTLNQVMFWG 373 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG--------------G-GCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC--------------C-cchHHhHhccCCeEEEEeceeeEEEec
Confidence 3577788888899999999999999999999975543 1 225889999999999999999999999
Q ss_pred cCCCCcc---cCCCCCCcccccc
Q 016725 127 WGNDARL---GHHTEPNDVEPHP 146 (384)
Q Consensus 127 ~n~~gql---g~~~~~~~~~~~~ 146 (384)
...+.-| |.+......+|++
T Consensus 374 DSPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 374 DSPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp CCTTSTTCCTTCCSBCCCCCCCC
T ss_pred CCCCcceeecCccceeeeccCCC
Confidence 8875544 3444444455544
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.65 E-value=3.1 Score=42.13 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 016725 340 AHTFALTESGKLYAFGAG 357 (384)
Q Consensus 340 ~~~~~lt~~g~l~~~G~n 357 (384)
.|+++...+|+||..|-.
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 477788888899999873
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.30 E-value=2.8 Score=37.47 Aligned_cols=264 Identities=7% Similarity=-0.008 Sum_probs=122.1
Q ss_pred CcEEEEEeCC------CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC---CeEEEEE
Q 016725 47 IRIIQAAAGA------GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLS 117 (384)
Q Consensus 47 ~~i~~i~~G~------~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~---~~~~~lt 117 (384)
..|..++... ...+.-..||.|..|-.... .... .+.. ....|..++... ...+.-.
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----------~~~~---~~~~-~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM----------QCIK---HYVG-HGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC----------CEEE---EEES-CCSCEEEEEECSSCTTEEEEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc----------eEee---eecC-CCCcEEEEEECCCCCCEEEEEe
Confidence 3465554432 24555667888999865431 1111 1111 234577777643 4556667
Q ss_pred cCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccC------
Q 016725 118 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH------ 191 (384)
Q Consensus 118 ~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~------ 191 (384)
.||.|+.|-......+ .....+. .....|..++.......+++...+| .|+.|-......+..
T Consensus 136 ~dg~i~iwd~~~~~~~--------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 136 KDHALRLWNIQTDTLV--------AIFGGVE--GHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp TTSCEEEEETTTTEEE--------EEECSTT--SCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHT
T ss_pred CCCeEEEEEeecCeEE--------EEecccc--cccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEE
Confidence 8999999965432110 0000001 2344577887765544455544488 999996543211100
Q ss_pred -CC--CCCCCCCeE-----EeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecC--
Q 016725 192 -GS--RTDEKHPRL-----IEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN-- 261 (384)
Q Consensus 192 -~~--~~~~~~p~~-----i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-- 261 (384)
.. ......+.. ..........|..++......+.-..+|.+++|-.....+.-............+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 00 000000000 00001122234444443556666678999999976543221110011111111121111
Q ss_pred CCcE--EEEEcC--CceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeeccccc--CccEEEEeeecc
Q 016725 262 DVKA--IHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQV--NERVVQISLTNS 335 (384)
Q Consensus 262 ~~~i--~~i~~g--~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~--~~~i~~i~~~~~ 335 (384)
...| ..++.. ....++-..+|.|+.|-..... . ....+..+... ...|..++..+
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~----------------~--~~~~~~~~~~~~~~~~v~~~~~s~- 345 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED----------------P--HKAKCTTLTHHKCGAAIRQTSFSR- 345 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS----------------G--GGCEEEEECCTTCCSCEEEEEECT-
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC----------------C--ccccceEEcccccCCceEEEEeCC-
Confidence 1112 222222 4455556778999999864211 0 01111112112 35566666511
Q ss_pred ccccceEEEEeCCCCEEEEeC
Q 016725 336 IYWNAHTFALTESGKLYAFGA 356 (384)
Q Consensus 336 ~~G~~~~~~lt~~g~l~~~G~ 356 (384)
-....+.-..||.|+.|-.
T Consensus 346 --~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 346 --DSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp --TSSEEEEEETTSEEEEEEC
T ss_pred --CCCeEEEEeCCCEEEEEEe
Confidence 2344555567888888854
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.78 E-value=1.2 Score=44.76 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=38.8
Q ss_pred CceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceE-EEEeCCCC
Q 016725 272 DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT-FALTESGK 350 (384)
Q Consensus 272 ~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~-~~lt~~g~ 350 (384)
..|++++..+|+||+.|-...+.. ... ......+..... ...+...+.... ..-..|+ +++..+|+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~--------~~~~~~v~~ydp---~t~~W~~~~~~~-~~R~~hs~a~ll~dg~ 523 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FED--------STPVFTPEIYVP---EQDTFYKQNPNS-IVRVYHSISLLLPDGR 523 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCC--------CSBCCCCEEEEG---GGTEEEECCCCS-SCCCTTEEEEECTTSC
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCC--------CCcccceEEEcC---CCCceeecCCCC-CccccccHhhcCCCcE
Confidence 357777777999999996443321 000 011111111111 122333332110 1123465 45568999
Q ss_pred EEEEeCCCCCC
Q 016725 351 LYAFGAGDKGQ 361 (384)
Q Consensus 351 l~~~G~n~~g~ 361 (384)
||..|.+.++.
T Consensus 524 v~v~GG~~~~~ 534 (656)
T 1k3i_A 524 VFNGGGGLCGD 534 (656)
T ss_dssp EEEEECCCCTT
T ss_pred EEecCCCCCCC
Confidence 99999976653
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.31 E-value=8.9 Score=38.29 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=39.7
Q ss_pred CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEE----cCCceEE-EEecCCCEEEEeCCCCCC
Q 016725 220 AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA----TGDYTTF-VVSEDGDVYSFGCGESAS 294 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~----~g~~~~~-~lt~~g~vy~wG~n~~g~ 294 (384)
..|++++..+|+||+.|-...+. +.+.......+.... +...+...+. ....|++ ++..+|+||+.|.+.++.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~-~~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGI-PFEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCC-TTCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCc-CcCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 35777777799999998644332 111122222232222 1122222222 2346764 456899999999876553
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.55 E-value=7.1 Score=34.69 Aligned_cols=209 Identities=10% Similarity=-0.006 Sum_probs=105.9
Q ss_pred CCcEEEEEeC------CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC------eE
Q 016725 46 GIRIIQAAAG------AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF------FT 113 (384)
Q Consensus 46 ~~~i~~i~~G------~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~------~~ 113 (384)
...|..|+.. ....++-..++.|..|-......+ .... ..........|..++.... ..
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------RLLQ--SYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------EEEE--EEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------Eeee--eccccCCCCcEEEEEeccCCCCCCCEE
Confidence 4478777765 556777778889999976532111 0100 0111112334666655433 45
Q ss_pred EEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-CceeEEEeeCCCCEEEEEecCCCCcccCC
Q 016725 114 AVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHG 192 (384)
Q Consensus 114 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~ 192 (384)
+.-..||.|+.|-..... ....+. .....|..++... ....+++-..+| .|+.|-....
T Consensus 89 ~~~~~dg~i~v~d~~~~~-----------~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~------ 148 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQ-----------CIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH-ALRLWNIQTD------ 148 (366)
T ss_dssp EEEETTCEEEEECTTTCC-----------EEEEEE--SCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTTT------
T ss_pred EEecCCCEEEEEEchhce-----------Eeeeec--CCCCcEEEEEECCCCCCEEEEEeCCC-eEEEEEeecC------
Confidence 556788889988543211 111111 2344588888765 444444444488 9999964321
Q ss_pred CCCCCCCCeEEeec---ccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccC-------CCC--CCCccCcEE--
Q 016725 193 SRTDEKHPRLIEQF---QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLG-------HGN--EECESVPKV-- 256 (384)
Q Consensus 193 ~~~~~~~p~~i~~~---~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg-------~~~--~~~~~~p~~-- 256 (384)
..+..+ ......|..++.. ..+.+....+|.|+.|-......+. ... ......+..
T Consensus 149 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 149 --------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp --------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred --------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 122221 2233456666544 3345555689999999765321110 000 000000000
Q ss_pred -----eeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCC
Q 016725 257 -----VQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 257 -----i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~ 291 (384)
........|..+.......+.-..+|.|..|-...
T Consensus 221 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 221 FPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred cCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 00012223444444456667778899999998643
No 24
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.30 E-value=11 Score=34.61 Aligned_cols=239 Identities=11% Similarity=-0.036 Sum_probs=118.5
Q ss_pred CCcEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEE
Q 016725 46 GIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 123 (384)
Q Consensus 46 ~~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy 123 (384)
...|..|+.. ..+.++-..||.|..|-..... .. ..+. .....|..++......+.-..+|.|+
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----------~~---~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~ 199 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----------KL---RTMA-GHQARVGCLSWNRHVLSSGSRSGAIH 199 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------EE---EEEC-CCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----------EE---EEec-CCCCceEEEEECCCEEEEEcCCCCEE
Confidence 4456666553 3355555678888888653311 00 1111 12345888887677777788899999
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEE
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 203 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i 203 (384)
.|-....++ ....+. .....|..++.......+++-..+| .|+.|-... ...+
T Consensus 200 i~d~~~~~~----------~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~--------------~~~~ 252 (401)
T 4aez_A 200 HHDVRIANH----------QIGTLQ--GHSSEVCGLAWRSDGLQLASGGNDN-VVQIWDARS--------------SIPK 252 (401)
T ss_dssp EEETTSSSC----------EEEEEE--CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTC--------------SSEE
T ss_pred EEecccCcc----------eeeEEc--CCCCCeeEEEEcCCCCEEEEEeCCC-eEEEccCCC--------------CCcc
Confidence 986543221 111111 2234577777765554555544478 999996532 1112
Q ss_pred eecccCCCCcEEEEcCC--cceEEEe---CCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCc--eEE
Q 016725 204 EQFQLLNLQPVVVAAGA--WHAAVVG---QDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTF 276 (384)
Q Consensus 204 ~~~~~~~~~i~~i~~g~--~~~~~lt---~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~ 276 (384)
..+......|..++... .+.++.. .+|.++.|-..... ....+. ....|..+....+ ..+
T Consensus 253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----------RVNTVD--AGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEE
T ss_pred EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----------EEEEEe--CCCcEEEEEECCCCCeEE
Confidence 11111233444554443 2344433 58889999654311 011121 1224555544322 222
Q ss_pred EEe--cCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEE
Q 016725 277 VVS--EDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF 354 (384)
Q Consensus 277 ~lt--~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~ 354 (384)
+.. .+|.|+.|-.... ....+..+......|..++..+ -+...+.-..||.|..|
T Consensus 320 ~~~g~~dg~i~v~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~s~---dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSS--------------------GLTKQVDIPAHDTRVLYSALSP---DGRILSTAASDENLKFW 376 (401)
T ss_dssp EEECTTTCEEEEEEEETT--------------------EEEEEEEEECCSSCCCEEEECT---TSSEEEEECTTSEEEEE
T ss_pred EEeecCCCcEEEEecCCc--------------------cceeEEEecCCCCCEEEEEECC---CCCEEEEEeCCCcEEEE
Confidence 222 5788888864310 0111111222334455554411 23444555678889888
Q ss_pred eCCCCCC
Q 016725 355 GAGDKGQ 361 (384)
Q Consensus 355 G~n~~g~ 361 (384)
-..+...
T Consensus 377 ~~~~~~~ 383 (401)
T 4aez_A 377 RVYDGDH 383 (401)
T ss_dssp ECCC---
T ss_pred ECCCCcc
Confidence 7754433
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.84 E-value=11 Score=38.12 Aligned_cols=19 Identities=5% Similarity=-0.260 Sum_probs=14.8
Q ss_pred CCcceEEEeCCCCEEEEeC
Q 016725 219 GAWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 219 g~~~~~~lt~~g~vy~wG~ 237 (384)
...|++++..++++|++|-
T Consensus 597 R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CBSCEEEEEETTEEEEECC
T ss_pred cccceEEEeCCCEEEEECC
Confidence 3567877777789999985
No 26
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.53 E-value=11 Score=32.44 Aligned_cols=187 Identities=16% Similarity=0.099 Sum_probs=102.4
Q ss_pred CCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEe---CCCeEEEEEcCCCE
Q 016725 46 GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRV 122 (384)
Q Consensus 46 ~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~---G~~~~~~lt~~G~v 122 (384)
...|..++......+.-..||.|+.|-. + .... .+.. ....+..+.. .....+.-..+|.|
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~---------~~~~---~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWKE---G---------SLVY---NLQA-HNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEET---T---------EEEE---EEEC-CSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEcC---C---------cEEE---eccc-CCCceeEEEEccCCCCEEEEEECCCCE
Confidence 4468888887777777888999999951 1 1111 1111 1224555543 45667777889999
Q ss_pred EEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeE
Q 016725 123 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 202 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 202 (384)
+.|-.. .....+.. .....+..++......++ +...+| .|+.|-.... ..
T Consensus 168 ~i~d~~-------------~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~dg-~i~i~d~~~~--------------~~ 217 (313)
T 3odt_A 168 KLWQND-------------KVIKTFSG-IHNDVVRHLAVVDDGHFI-SCSNDG-LIKLVDMHTG--------------DV 217 (313)
T ss_dssp EEEETT-------------EEEEEECS-SCSSCEEEEEEEETTEEE-EEETTS-EEEEEETTTC--------------CE
T ss_pred EEEecC-------------ceEEEEec-cCcccEEEEEEcCCCeEE-EccCCC-eEEEEECCch--------------hh
Confidence 988411 01111111 134456666665444433 333477 9999965321 12
Q ss_pred EeecccCCCCcEEEEcCCc-ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCc-eEEEEec
Q 016725 203 IEQFQLLNLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSE 280 (384)
Q Consensus 203 i~~~~~~~~~i~~i~~g~~-~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~ 280 (384)
+..+......|..++.... ..++...+|.|++|-..... ....+. .....|..+....+ ..++-..
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 285 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS-----------LKQVIT-LPAISIWSVDCMSNGDIIVGSS 285 (313)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC-----------EEEEEE-CSSSCEEEEEECTTSCEEEEET
T ss_pred hhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc-----------eeEEEe-ccCceEEEEEEccCCCEEEEeC
Confidence 2222223345666655433 45666788999999643310 111222 22335666654433 3566788
Q ss_pred CCCEEEEeCC
Q 016725 281 DGDVYSFGCG 290 (384)
Q Consensus 281 ~g~vy~wG~n 290 (384)
+|.|+.|-..
T Consensus 286 dg~i~iw~~~ 295 (313)
T 3odt_A 286 DNLVRIFSQE 295 (313)
T ss_dssp TSCEEEEESC
T ss_pred CCcEEEEeCC
Confidence 8999999754
No 27
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.08 E-value=16 Score=33.49 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=81.2
Q ss_pred EEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC--CeEEEEEcCCCEEEEEc
Q 016725 50 IQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVYTFSW 127 (384)
Q Consensus 50 ~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~--~~~~~lt~~G~vy~~G~ 127 (384)
..++-.....++...+|.|+.|-..... . ...+.......|..|+... .+.++-..+|.|+.|-.
T Consensus 97 ~~~~~s~~~l~~~~~d~~v~lw~~~~~~----------~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 97 NLLDWSNLNVVAVALERNVYVWNADSGS----------V---SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCC----------E---EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEeecCCCEEEEECCCeEEEeeCCCCc----------E---eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3355556778888899999999764411 1 0111111233577776543 35555677899998865
Q ss_pred CCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecc
Q 016725 128 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ 207 (384)
Q Consensus 128 n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 207 (384)
..... ...+. .....|..++......+.-.. +| .|+.|-..... ..+..+.
T Consensus 164 ~~~~~-----------~~~~~--~~~~~v~~~~~~~~~l~~~~~--dg-~i~i~d~~~~~-------------~~~~~~~ 214 (401)
T 4aez_A 164 ESQTK-----------LRTMA--GHQARVGCLSWNRHVLSSGSR--SG-AIHHHDVRIAN-------------HQIGTLQ 214 (401)
T ss_dssp TTCCE-----------EEEEC--CCSSCEEEEEEETTEEEEEET--TS-EEEEEETTSSS-------------CEEEEEE
T ss_pred cCCeE-----------EEEec--CCCCceEEEEECCCEEEEEcC--CC-CEEEEecccCc-------------ceeeEEc
Confidence 43211 11111 223457777775554444444 88 99999653211 1111112
Q ss_pred cCCCCcEEEEcCC--cceEEEeCCCCEEEEeCCC
Q 016725 208 LLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 208 ~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~ 239 (384)
.....|..++... .+.+.-..||.|++|-...
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 2333455555443 3445556789999997543
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=87.68 E-value=14 Score=32.60 Aligned_cols=163 Identities=7% Similarity=-0.035 Sum_probs=77.9
Q ss_pred CcEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcC---
Q 016725 47 IRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSRE--- 119 (384)
Q Consensus 47 ~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~--- 119 (384)
..|..++.. ....+....||.|+.|-..... .... +. ....|..++.... +.++...+
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~---~~--~~~~v~~~~~~~~~~~l~~~~~~~~~ 139 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ----------CVAT---WK--SPVPVKRVEFSPCGNYFLAILDNVMK 139 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----------EEEE---EE--CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------EEEE---ee--cCCCeEEEEEccCCCEEEEecCCccC
Confidence 367777654 4456666788999999654311 1111 11 1234555554333 44444555
Q ss_pred --CCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCC
Q 016725 120 --GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE 197 (384)
Q Consensus 120 --G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~ 197 (384)
|.|+.|-....................+........+..++.......+++-..+| .|+.|-....
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~----------- 207 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNN----------- 207 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTT-----------
T ss_pred CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCC-----------
Confidence 78888865543221110000000111111101112466666655444444444478 9999954321
Q ss_pred CCCeEEeecccCCCCcEEEEcCCc--ceEEEeCCCCEEEEeCC
Q 016725 198 KHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 198 ~~p~~i~~~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~n 238 (384)
...+..+......|..++.... ..++...+|.|++|-..
T Consensus 208 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 208 --YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp --TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred --cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 1222222223345555554433 34445678888888643
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=87.41 E-value=14 Score=32.21 Aligned_cols=201 Identities=10% Similarity=0.010 Sum_probs=99.7
Q ss_pred EeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC-eEEEEEcCCCEEEEEcCCCC
Q 016725 53 AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVYTFSWGNDA 131 (384)
Q Consensus 53 ~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~-~~~~lt~~G~vy~~G~n~~g 131 (384)
..+.-..+++..||+++..+......+.... ... ..+..... ....|..++.... ..++...+|.|..|-.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGI--PRH-ARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTC--CSE-EEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEecccc--CCc-cccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence 3445567889999999988875544333221 111 11111111 2334666655433 33444448888888654322
Q ss_pred cccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCC
Q 016725 132 RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNL 211 (384)
Q Consensus 132 qlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 211 (384)
.. .....+........|..++.......+++-..+| .|+.|-.... .+.....+.....
T Consensus 84 ~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~------------~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 84 NK--------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-TLSIWDLAAP------------TPRIKAELTSSAP 142 (337)
T ss_dssp CC--------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-EEEEEECCCC--------------EEEEEEECSSS
T ss_pred ce--------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEECCCC------------CcceeeecccCCC
Confidence 10 0111111101234577777765554444443478 9999954321 1122222222333
Q ss_pred CcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEEecCCCEEEE
Q 016725 212 QPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSF 287 (384)
Q Consensus 212 ~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~w 287 (384)
.+..++.. ..+.++-..+|.++.|-..... ....+.. ....|..+... ....++-..+|.|+.|
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 45555443 3345555688999999754311 0111111 12345555443 3345556778889988
Q ss_pred eCC
Q 016725 288 GCG 290 (384)
Q Consensus 288 G~n 290 (384)
-..
T Consensus 211 d~~ 213 (337)
T 1gxr_A 211 DLR 213 (337)
T ss_dssp ETT
T ss_pred ECC
Confidence 753
No 30
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=86.10 E-value=22 Score=33.07 Aligned_cols=204 Identities=7% Similarity=-0.088 Sum_probs=109.4
Q ss_pred CcEEEEEe----CCCeeEEEEcCCCEEEEecCCCCCcccCCC---Cceeeec----C--EEecCCCCCcEEEEEeCCCeE
Q 016725 47 IRIIQAAA----GAGRTMLISDAGQVYAFGKDSFGEAEYGVQ---GTKLVTS----P--QLVESLKNIFVVQAAIGNFFT 113 (384)
Q Consensus 47 ~~i~~i~~----G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~---~~~~~~~----p--~~i~~~~~~~i~~I~~G~~~~ 113 (384)
..|..++. .....+.-..||.|..|-......+-.... ....... | .....-....+..++......
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 283 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEE
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEE
Confidence 35655543 234566677889999997765332211000 0000000 0 111111233577777777777
Q ss_pred EEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCC
Q 016725 114 AVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS 193 (384)
Q Consensus 114 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~ 193 (384)
+.-..||.|+.|-...... ...+. .....|..++.......+++-..+| .|+.|-...
T Consensus 284 ~~~~~d~~i~vwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~-------- 341 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKC-----------LYILS--GHTDRIYSTIYDHERKRCISASMDT-TIRIWDLEN-------- 341 (464)
T ss_dssp EEEETTSCEEEEETTTTEE-----------EEEEC--CCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTT--------
T ss_pred EEEeCCCeEEEEECCCCcE-----------EEEec--CCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC--------
Confidence 8888899999986543211 11111 1234577777766544455544578 999995432
Q ss_pred CCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCc
Q 016725 194 RTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY 273 (384)
Q Consensus 194 ~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 273 (384)
...+..+......+..++....+.+.-..||.|.+|-.....+ ...........+..+.....
T Consensus 342 ------~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 404 (464)
T 3v7d_B 342 ------GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN 404 (464)
T ss_dssp ------TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS
T ss_pred ------CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC
Confidence 2233333334445667777777777778999999997654211 11111222234445554444
Q ss_pred eEEEEecCCCEEEEeCC
Q 016725 274 TTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 274 ~~~~lt~~g~vy~wG~n 290 (384)
.++...+|.|+.|-..
T Consensus 405 -~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 405 -ILVSGSENQFNIYNLR 420 (464)
T ss_dssp -EEEEEETTEEEEEETT
T ss_pred -EEEEecCCeEEEEECC
Confidence 4444458888888754
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=84.66 E-value=22 Score=31.95 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=77.5
Q ss_pred CcEEEEEeC------CCe-eEEEEcCCCEEEEecCCCCCcccCCCCceeeecCE-Eec------CCCCCcEEEEEeCCC-
Q 016725 47 IRIIQAAAG------AGR-TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQ-LVE------SLKNIFVVQAAIGNF- 111 (384)
Q Consensus 47 ~~i~~i~~G------~~~-~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~-~i~------~~~~~~i~~I~~G~~- 111 (384)
..|..++.. ..+ .+....||.|+.|-......-+.+ ......|. .+. ......|..++....
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS---LTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH---TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc---ceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 467666554 444 555668899999966441000000 00001111 111 112334555555433
Q ss_pred eEEEEEcCCCEEEEEcCCCCcccCCCCCCccccccccc-ccC---CCCeEEEEEeCCceeEEEeeCC---CCEEEEEecC
Q 016725 112 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG-TLE---NIPVVQIAAGYCYLLALACQPS---GMAVYSVGCG 184 (384)
Q Consensus 112 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~-~~~---~~~i~~i~~g~~~~~~l~~~~~---G~~vy~~G~n 184 (384)
..+.-..+|.|+.|-..... ....+.. .-. ...|..++.......+++...+ | .|+.|-..
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~ 266 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLR-----------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETE 266 (397)
T ss_dssp EEEEECTTSEEEEEETTTTE-----------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE-EEEEEETT
T ss_pred eEEEEeCCCcEEEEECCCCc-----------eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCc-eEEEEECC
Confidence 44445667888888654311 1111110 001 4457777775444333333336 7 99999654
Q ss_pred CCCcccCCCCCCCCCCeEEeeccc-------------CCCCcEEEEcC--CcceEEEeCCCCEEEEeCCC
Q 016725 185 LGGKLGHGSRTDEKHPRLIEQFQL-------------LNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 185 ~~gqlg~~~~~~~~~p~~i~~~~~-------------~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~ 239 (384)
... .+..+.. ....|..++.. ....++-..+|.|++|-...
T Consensus 267 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 267 FGE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp TCC--------------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCc--------------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 221 1111111 23345555554 33445556788899997543
No 32
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=84.47 E-value=26 Score=32.53 Aligned_cols=243 Identities=10% Similarity=0.039 Sum_probs=124.5
Q ss_pred EEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC-eEEEEEcCCCEEEEEc
Q 016725 49 IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVYTFSW 127 (384)
Q Consensus 49 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~-~~~~lt~~G~vy~~G~ 127 (384)
+..++......+.-..||.|..|-.... ... ..+.. ....|..++.... ..+.-..||.|..|-.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~----------~~~---~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK----------KFL---LQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT----------EEE---EEECC-CSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC----------cEE---EEEeC-CCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 4555666667777788999999965331 111 11111 2335777776543 5566678999999965
Q ss_pred CCCCcccCCCCCCcccccccccccCCCCeEEEEEe--CCceeEEEeeCCCCEEEEEecCCCCcccCCCCC---------C
Q 016725 128 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT---------D 196 (384)
Q Consensus 128 n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g--~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~---------~ 196 (384)
..... ...+. .....|..++.. .....+++-..+| .|+.|-............. .
T Consensus 191 ~~~~~-----------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 191 KKGCC-----------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp TTTEE-----------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTS-CEEEEECCCCCCC------CCSSEEESCG
T ss_pred CCCcE-----------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCC-cEEEeeCCCCcccccccccCCcceEeecc
Confidence 43211 11111 123346666554 2323344444488 9999976543222111000 0
Q ss_pred CCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEc--CCce
Q 016725 197 EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT--GDYT 274 (384)
Q Consensus 197 ~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~ 274 (384)
...+..+..+......+..++......++-..+|.|++|-...... ...+.. ....|..+.. ....
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-----------LYILSG-HTDRIYSTIYDHERKR 324 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEEETTTTE
T ss_pred CCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEecC-CCCCEEEEEEcCCCCE
Confidence 0111122222223445666666666677778899999997543111 011111 1223444443 3345
Q ss_pred EEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEE
Q 016725 275 TFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF 354 (384)
Q Consensus 275 ~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~ 354 (384)
.+.-..||.|+.|-... ...+..+......|..+.. ...+.+.-..||.|..|
T Consensus 325 l~sg~~dg~i~vwd~~~----------------------~~~~~~~~~h~~~v~~~~~-----~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 325 CISASMDTTIRIWDLEN----------------------GELMYTLQGHTALVGLLRL-----SDKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEEEETTSCEEEEETTT----------------------TEEEEEECCCSSCEEEEEE-----CSSEEEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEEECCC----------------------CcEEEEEeCCCCcEEEEEE-----cCCEEEEEeCCCcEEEE
Confidence 66667888999987532 1122222223445555555 44555555667777777
Q ss_pred eCCC
Q 016725 355 GAGD 358 (384)
Q Consensus 355 G~n~ 358 (384)
-.++
T Consensus 378 d~~~ 381 (464)
T 3v7d_B 378 DAND 381 (464)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 6654
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=82.73 E-value=23 Score=30.71 Aligned_cols=190 Identities=9% Similarity=-0.058 Sum_probs=96.4
Q ss_pred CcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC--CeEEEEEcCCCE
Q 016725 47 IRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRV 122 (384)
Q Consensus 47 ~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~--~~~~~lt~~G~v 122 (384)
..|..++... ...++-..+|.|+.|-.... ..... ..+.. ....|..++... .+.+.-..+|.|
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP----------TPRIK-AELTS-SAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEE-EEEEC-SSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----------Cccee-eeccc-CCCceEEEEECCCCCEEEEEeCCCcE
Confidence 4566666543 34555567888888865431 10000 01111 123466666543 355566778999
Q ss_pred EEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeE
Q 016725 123 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 202 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 202 (384)
+.|-..... ....+. .....+..++.......+++...+| .|+.|-.... ..
T Consensus 166 ~~~d~~~~~-----------~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~--------------~~ 217 (337)
T 1gxr_A 166 AVWDLHNQT-----------LVRQFQ--GHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREG--------------RQ 217 (337)
T ss_dssp EEEETTTTE-----------EEEEEC--CCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTT--------------EE
T ss_pred EEEeCCCCc-----------eeeeee--cccCceEEEEECCCCCEEEEEecCC-cEEEEECCCC--------------ce
Confidence 988654321 111111 1234577777765544444444488 9999964321 12
Q ss_pred EeecccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEE
Q 016725 203 IEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVV 278 (384)
Q Consensus 203 i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l 278 (384)
+..+. ....+..++.. ....++-..+|.++.|-..... ...+.. ....|..+... ....+.-
T Consensus 218 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 218 LQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLHL-HESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred Eeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEcC-CccceeEEEECCCCCEEEEe
Confidence 22111 22234444433 2344455678888888654321 111211 12245555544 3445556
Q ss_pred ecCCCEEEEeCC
Q 016725 279 SEDGDVYSFGCG 290 (384)
Q Consensus 279 t~~g~vy~wG~n 290 (384)
..+|.|+.|-..
T Consensus 284 ~~dg~i~~~~~~ 295 (337)
T 1gxr_A 284 GKDNLLNAWRTP 295 (337)
T ss_dssp ETTSEEEEEETT
T ss_pred cCCCcEEEEECC
Confidence 778889998753
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.36 E-value=56 Score=34.88 Aligned_cols=110 Identities=12% Similarity=-0.065 Sum_probs=54.1
Q ss_pred cEEEEEeCCC-eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEE
Q 016725 102 FVVQAAIGNF-FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 180 (384)
Q Consensus 102 ~i~~I~~G~~-~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 180 (384)
.|..++.... ..+....+|.|+.|-...... ...+. .....|..++.......+++...+| .|+.
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~-~v~i 1111 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-----------ERDFT--CHQGTVLSCAISSDATKFSSTSADK-TAKI 1111 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTTCC-----------CEEEE--CCSSCCCCEEECSSSSSCEEECCSS-CCCE
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCCce-----------eEEEc--ccCCcEEEEEECCCCCEEEEEcCCC-cEEE
Confidence 4666655433 456677888899886533210 01111 1122355555544443444443477 8888
Q ss_pred EecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc--ceEEEeCCCCEEEEeCCC
Q 016725 181 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 181 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~n~ 239 (384)
|-......+ ..+......|..++.... ..+.-..||.|++|-...
T Consensus 1112 wd~~~~~~~--------------~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1112 WSFDLLSPL--------------HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp ECSSSSSCS--------------BCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred EECCCccee--------------eeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 854322111 111112223444444333 334445788899997654
No 35
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=82.06 E-value=26 Score=30.81 Aligned_cols=151 Identities=9% Similarity=-0.037 Sum_probs=85.9
Q ss_pred CCcEEEEEeCCC-----eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCC
Q 016725 100 NIFVVQAAIGNF-----FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS 174 (384)
Q Consensus 100 ~~~i~~I~~G~~-----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~ 174 (384)
...|..|+.... ..+.-..||.|+.|-....++ .....+. .....|..++.......+++-..+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEec--cccCCEEEEEECcCCCEEEEEcCC
Confidence 456888887764 344556789999987654221 1111111 234457778776655445554458
Q ss_pred CCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEc--CCc--ceEEEeCCCCEEEEeCCCCCccCCCCCCC
Q 016725 175 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEEC 250 (384)
Q Consensus 175 G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~--~~~~lt~~g~vy~wG~n~~gqlg~~~~~~ 250 (384)
| .|+.|-..... +..+.. ....|..+.. ... ..+.-..||.|++|-.....
T Consensus 108 g-~v~iwd~~~~~------------~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------- 162 (368)
T 3mmy_A 108 K-TAKMWDLSSNQ------------AIQIAQ---HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN--------- 162 (368)
T ss_dssp S-EEEEEETTTTE------------EEEEEE---CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---------
T ss_pred C-cEEEEEcCCCC------------ceeecc---ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc---------
Confidence 8 99999653211 111211 3345666654 322 34555678999999644311
Q ss_pred ccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCC
Q 016725 251 ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 251 ~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n 290 (384)
....+.. ...+..+..-....++.+.++.++.|-..
T Consensus 163 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 163 --PMMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp --CSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred --EEEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 1112221 12455556666777888899999999764
No 36
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=80.41 E-value=34 Score=31.06 Aligned_cols=156 Identities=15% Similarity=0.004 Sum_probs=80.9
Q ss_pred EEeCCCeeEEE---EcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC---CeEEEEEcCCCEEEE
Q 016725 52 AAAGAGRTMLI---SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTF 125 (384)
Q Consensus 52 i~~G~~~~~~l---t~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~---~~~~~lt~~G~vy~~ 125 (384)
+++...+..++ ..+|.|+.|-....+.+- .....+.. ....|..++... ...+.-..||.|..|
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------KNVPLVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------TTCCCBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------CCCceEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 55666665554 457999999765543220 00011111 133577777643 455556778999999
Q ss_pred EcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCc-eeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEe
Q 016725 126 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE 204 (384)
Q Consensus 126 G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~ 204 (384)
-....+... ....+.... ......|..++..... .++++...+| .|+.|-... ...+.
T Consensus 110 ~~~~~~~~~-----~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~--------------~~~~~ 168 (402)
T 2aq5_A 110 EIPDGGLVL-----PLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGT--------------GAAVL 168 (402)
T ss_dssp ECCTTCCSS-----CBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTS-CEEEEETTT--------------TEEEE
T ss_pred EccCCCCcc-----ccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECCC--------------CCccE
Confidence 655432111 000111111 1234457778776654 3444444478 999996432 12222
Q ss_pred ec--ccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCC
Q 016725 205 QF--QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 205 ~~--~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n 238 (384)
.+ ......|..++.. ....+.-..||.|++|-..
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 22 1123345555543 2344555678899999754
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=80.15 E-value=33 Score=30.81 Aligned_cols=152 Identities=16% Similarity=0.047 Sum_probs=73.2
Q ss_pred EEEEEeCC-CeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEE
Q 016725 103 VVQAAIGN-FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSV 181 (384)
Q Consensus 103 i~~I~~G~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~ 181 (384)
|..++... ...++-..+|.|..|-......+ ........-....|..++....-..+++-..+| .|+.|
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-~v~iw 166 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESL---------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-SVKVW 166 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-CEEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeecccccee---------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-eEEEE
Confidence 66665432 34555566777877732221100 000011001234577777766655555555588 99999
Q ss_pred ecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC---cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEee
Q 016725 182 GCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQ 258 (384)
Q Consensus 182 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~ 258 (384)
-... ...+..+......|..++... ...+....||.|.+|-......+. .+.
T Consensus 167 d~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-----------~~~ 221 (357)
T 4g56_B 167 DLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-----------RID 221 (357)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-----------BCC
T ss_pred ECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee-----------eee
Confidence 5332 233333332334566665432 234555688999999543211110 000
Q ss_pred -ecCCCcEEEEEcC--CceEE-EEecCCCEEEEeC
Q 016725 259 -ALNDVKAIHVATG--DYTTF-VVSEDGDVYSFGC 289 (384)
Q Consensus 259 -~~~~~~i~~i~~g--~~~~~-~lt~~g~vy~wG~ 289 (384)
......+..++.. ....+ .-..++.|+.|-.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 0112234555432 22333 3467888998864
No 38
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=79.24 E-value=39 Score=31.14 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=98.6
Q ss_pred eeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC---CCeEEEEEcCCCEEEEEcCCCCccc
Q 016725 58 RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGRVYTFSWGNDARLG 134 (384)
Q Consensus 58 ~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G---~~~~~~lt~~G~vy~~G~n~~gqlg 134 (384)
..+.-..+|.|..|-.+..... .....+..........|..|+.. ....+....+|.|+.|-......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKE-------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBG-------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--
T ss_pred eEEEEeCCCeEEEEeCCCCCCC-------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--
Confidence 4555567888888877653211 11111111111223357778764 34455567899999996654211
Q ss_pred CCCCCCcccccccccccCCCCeEEEEEeCCce-eEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCc
Q 016725 135 HHTEPNDVEPHPLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQP 213 (384)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i 213 (384)
..+..... .....|..++...... ++++-..+| .|..|-.....+ ....+.. ....|
T Consensus 267 -------~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~----------~~~~~~~---h~~~v 324 (430)
T 2xyi_A 267 -------SKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKL----------KLHSFES---HKDEI 324 (430)
T ss_dssp -------SSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTS----------CSEEEEC---CSSCE
T ss_pred -------CcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCC----------CeEEeec---CCCCE
Confidence 01111000 2234577777755432 333333478 999997543221 1112221 23356
Q ss_pred EEEEcCCcc---eEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecC--CCcEEEEEcCCc---eEEEEecCCCEE
Q 016725 214 VVVAAGAWH---AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDY---TTFVVSEDGDVY 285 (384)
Q Consensus 214 ~~i~~g~~~---~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~---~~~~lt~~g~vy 285 (384)
..+...... .+.-..+|.|.+|-....+............|..+.... ...|..++-..+ ..+....+|.|.
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 666554332 344457899999976542211100000000122232221 224555554432 455567788888
Q ss_pred EEeCC
Q 016725 286 SFGCG 290 (384)
Q Consensus 286 ~wG~n 290 (384)
.|-..
T Consensus 405 iw~~~ 409 (430)
T 2xyi_A 405 VWQMA 409 (430)
T ss_dssp EEEEC
T ss_pred EeEcc
Confidence 88754
No 39
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=79.11 E-value=35 Score=30.53 Aligned_cols=202 Identities=11% Similarity=0.018 Sum_probs=100.3
Q ss_pred CcEEEEEeC------C---CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCC----CCcEEEEEeC----
Q 016725 47 IRIIQAAAG------A---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK----NIFVVQAAIG---- 109 (384)
Q Consensus 47 ~~i~~i~~G------~---~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~----~~~i~~I~~G---- 109 (384)
..|..++.. . ...+....||.|+.|-...... ........+.... ...|..++..
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccC
Confidence 356666543 3 3455556788888886533110 0000012222221 2457767655
Q ss_pred --CCe-EEEEEcCCCEEEEEcCC------CCcccCCCCCCccccc-cccc-----ccCCCCeEEEEEeCCceeEEEeeCC
Q 016725 110 --NFF-TAVLSREGRVYTFSWGN------DARLGHHTEPNDVEPH-PLLG-----TLENIPVVQIAAGYCYLLALACQPS 174 (384)
Q Consensus 110 --~~~-~~~lt~~G~vy~~G~n~------~gqlg~~~~~~~~~~~-~i~~-----~~~~~~i~~i~~g~~~~~~l~~~~~ 174 (384)
..+ .+.-..+|.|+.|-... ...+. ..+. .+.. ......|..++..... .+++...+
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 206 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN 206 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceee-------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC
Confidence 344 55567889999986554 11111 1110 1110 1234457777776655 55555457
Q ss_pred CCEEEEEecCCCCcccCCCCCCCCCCeEEeeccc---C---CCCcEEEEcCC--cceEEEeCC---CCEEEEeCCCCCcc
Q 016725 175 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL---L---NLQPVVVAAGA--WHAAVVGQD---GRVCTWGWGRYGCL 243 (384)
Q Consensus 175 G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~---~---~~~i~~i~~g~--~~~~~lt~~---g~vy~wG~n~~gql 243 (384)
| .|+.|-... ...+..+.. . ...|..++... .+.++-..+ |.|++|-......+
T Consensus 207 g-~i~i~d~~~--------------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~ 271 (397)
T 1sq9_A 207 G-TVQISELST--------------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 271 (397)
T ss_dssp S-EEEEEETTT--------------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred C-cEEEEECCC--------------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence 7 999996432 122222222 1 33555555432 334444566 78998875432111
Q ss_pred CCCCCCCccCcEEeeec------------CCCcEEEEEcC--CceEEEEecCCCEEEEeCC
Q 016725 244 GHGNEECESVPKVVQAL------------NDVKAIHVATG--DYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 244 g~~~~~~~~~p~~i~~~------------~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n 290 (384)
..+... ....|..+... ....+.-..+|.|+.|-..
T Consensus 272 -----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 272 -----------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp -----------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred -----------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 111110 12345555543 3455556778899999754
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=78.69 E-value=34 Score=30.17 Aligned_cols=198 Identities=15% Similarity=0.056 Sum_probs=100.5
Q ss_pred CcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC----CCeEEEEEcCC
Q 016725 47 IRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREG 120 (384)
Q Consensus 47 ~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G----~~~~~~lt~~G 120 (384)
..|..++... ...+.-..||.|+.|-.... .......+.. ....|..++.. ....+.-..||
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-----------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 3576666543 33444456888888855310 0011111221 23357778764 45666677899
Q ss_pred CEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCC--ceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCC
Q 016725 121 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEK 198 (384)
Q Consensus 121 ~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~ 198 (384)
.|..|-..... ....... ......|..++.... ...+++-..+| .|+.|-...... .
T Consensus 80 ~v~iwd~~~~~----------~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~---------~ 138 (379)
T 3jrp_A 80 KVLIWKEENGR----------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGT---------T 138 (379)
T ss_dssp CEEEEEEETTE----------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSC---------C
T ss_pred EEEEEEcCCCc----------eeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCc---------e
Confidence 99999654321 0011111 122345777777654 33333333488 999996543211 1
Q ss_pred CCeEEeecccCCCCcEEEEcCC---------------cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec--C
Q 016725 199 HPRLIEQFQLLNLQPVVVAAGA---------------WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--N 261 (384)
Q Consensus 199 ~p~~i~~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~ 261 (384)
.+..+.. ....|..++... ...++-..+|.|+.|-..... . ....+..+ .
T Consensus 139 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~--~~~~~~~~~~h 205 (379)
T 3jrp_A 139 SPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------Q--TYVLESTLEGH 205 (379)
T ss_dssp CEEEEEC---CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------T--EEEEEEEECCC
T ss_pred eeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------c--ceeeEEEEecc
Confidence 1112221 233455554432 345556788999999543210 0 01111111 1
Q ss_pred CCcEEEEEcCC-----ceEEEEecCCCEEEEeCC
Q 016725 262 DVKAIHVATGD-----YTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 262 ~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~n 290 (384)
...|..+.... ...+....+|.|+.|-..
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 23466665543 345556778999999754
No 41
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=77.83 E-value=34 Score=29.67 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=11.7
Q ss_pred eeEEEEcCCCEEEEecCC
Q 016725 58 RTMLISDAGQVYAFGKDS 75 (384)
Q Consensus 58 ~~~~lt~~g~vy~~G~n~ 75 (384)
|++++ .+++||.+|-..
T Consensus 56 ~~~~~-~~~~l~v~GG~~ 72 (301)
T 2vpj_A 56 VASVS-LHDRIYVIGGYD 72 (301)
T ss_dssp CEEEE-ETTEEEEECCBC
T ss_pred ccEEE-ECCEEEEEcCCC
Confidence 44444 568999999754
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.51 E-value=62 Score=32.45 Aligned_cols=190 Identities=13% Similarity=0.018 Sum_probs=96.1
Q ss_pred cEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC--CCeEEEEEcCCCEE
Q 016725 48 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 123 (384)
Q Consensus 48 ~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G--~~~~~~lt~~G~vy 123 (384)
.|..|+.. ....++-..+|.|..|-.... ... ..+.. ....|..++.. ....+.-..+|.|+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~----------~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ----------VEV---RSIQV-TETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT----------EEE---EEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC----------ceE---EEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 56666554 334455556888888864331 111 11111 12245555443 34556667889999
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEE
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 203 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i 203 (384)
.|-...... ...+. .....|..++.......+++...+| .|..|-.... ....
T Consensus 81 vw~~~~~~~-----------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~-------------~~~~ 133 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENN-------------WALE 133 (814)
T ss_dssp EEETTTCCE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGT-------------SEEE
T ss_pred EEECCCCcE-----------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCC-------------ceEE
Confidence 886543211 11111 1234577777766555455554578 9999964321 1111
Q ss_pred eecccCCCCcEEEEcC---CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec--CCCcEEEEEc--CCceEE
Q 016725 204 EQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVAT--GDYTTF 276 (384)
Q Consensus 204 ~~~~~~~~~i~~i~~g---~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~--g~~~~~ 276 (384)
..+......+..++.. ....+....+|.|++|-..... ....+... .......... .....+
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 1211123345555543 2345556788999999753211 11122211 2222333333 344555
Q ss_pred EEecCCCEEEEeC
Q 016725 277 VVSEDGDVYSFGC 289 (384)
Q Consensus 277 ~lt~~g~vy~wG~ 289 (384)
+-..+|.|+.|-.
T Consensus 203 ~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 203 TASDDLTIKIWDY 215 (814)
T ss_dssp EECTTSEEEEEET
T ss_pred EEeCCCEEEEEEC
Confidence 5677888999864
No 43
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.51 E-value=39 Score=29.61 Aligned_cols=218 Identities=14% Similarity=0.048 Sum_probs=116.4
Q ss_pred CCcEEEEEe--CCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEe---CCceeEEEeeCC
Q 016725 100 NIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG---YCYLLALACQPS 174 (384)
Q Consensus 100 ~~~i~~I~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g---~~~~~~l~~~~~ 174 (384)
+..+..+.. ...+.+++|++|++|..-... +-...... + . -.+++|+.+.+- ..+.+++++ +
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~~~~------l-l-~~~e~i~~v~~~~~~~~~~v~~T~--~ 89 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGSKVS------L-K-SREEKIVGAFIREKFGNRLLLATK--K 89 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSEECC------C-S-STTCCEEEEEEGGGSCSEEEEEET--T
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCcccc------c-C-CCCCEEEEEECCcCCCCEEEEEeC--C
Confidence 334555543 344688999999999653222 11000000 2 2 357789888772 245667776 8
Q ss_pred CCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEc--CCcceEEEeCCCCEEEEeCCCCCccCCCCCCCcc
Q 016725 175 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 252 (384)
Q Consensus 175 G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~ 252 (384)
| .+.-.-..++.+- ..-...-.+. .+..++.+.. ...+.+++|++|++|.+-......+|....-..
T Consensus 90 G-~iKr~~l~~~~~~--------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~- 158 (276)
T 3no0_A 90 G-YVKKIPLAEFEYK--------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ- 158 (276)
T ss_dssp S-EEEEEEGGGTTTC--------STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-
T ss_pred C-EEEEEEHHHhhhh--------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-
Confidence 8 8887765554310 0111111111 2234444433 344589999999999987665555544321111
Q ss_pred CcEEeeecCCCcEEEEEcC--CceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEE
Q 016725 253 VPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQI 330 (384)
Q Consensus 253 ~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i 330 (384)
.+..-.+.+|+.+... ....+++|++|.+.-.--..+-..+.+. .. +..+ ..+.+++.+
T Consensus 159 ---~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~g--------kG-------v~~i-~~~~~lv~~ 219 (276)
T 3no0_A 159 ---GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGV--------KG-------TEVS-GTKDTLVDL 219 (276)
T ss_dssp ---CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTC--------CC-------EECC-CSSSCEEEE
T ss_pred ---EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCC--------cc-------eEEE-cCCCcEEEE
Confidence 1222235566665443 3467788999988877654443222211 00 0000 123345544
Q ss_pred eeeccccccceEEEEeCCCCEEE--EeCCCCCCCC
Q 016725 331 SLTNSIYWNAHTFALTESGKLYA--FGAGDKGQLG 363 (384)
Q Consensus 331 ~~~~~~~G~~~~~~lt~~g~l~~--~G~n~~g~lg 363 (384)
... .+++..++++++|++.. +-.++.-.+|
T Consensus 220 ~~~---~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 220 IPI---KEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp EEE---SSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred EEe---CCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 331 16678899999999998 6554444433
No 44
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.07 E-value=45 Score=30.09 Aligned_cols=222 Identities=13% Similarity=0.065 Sum_probs=115.5
Q ss_pred EeCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccc--cccccccCCCCeEEEEEeC-----CceeEEEeeCCCCEEE
Q 016725 107 AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP--HPLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAVY 179 (384)
Q Consensus 107 ~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~--~~i~~~~~~~~i~~i~~g~-----~~~~~l~~~~~G~~vy 179 (384)
+....+.+++|+.|++|..-...--..+. ...-.| ..+.. -.+++|+.+.... .+.++++. +| .+.
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~--~G-~iK 122 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASR---TARGQHVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATR--NG-LVK 122 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCS---SSCCEEHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEET--TS-EEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cCCCEEHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcC--CC-EEE
Confidence 45666788899999999876544322211 111111 22222 3577898887765 34566666 88 877
Q ss_pred EEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEE--EEcCCcceEEEeCCCCEEEEeCC--CCCccCCCCCCCccCcE
Q 016725 180 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHAAVVGQDGRVCTWGWG--RYGCLGHGNEECESVPK 255 (384)
Q Consensus 180 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~~~~~lt~~g~vy~wG~n--~~gqlg~~~~~~~~~p~ 255 (384)
-.-..+|.... + .-...-.+. .+..++. +.....+.+++|++|++|-+--. .-..+|....-. .
T Consensus 123 r~~l~~~~~~~------r-~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~ 190 (327)
T 3uc1_A 123 KSKLTDFDSNR------S-GGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----Q 190 (327)
T ss_dssp EEEGGGGCCCC------S-SCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----E
T ss_pred EeEHHHhhccc------c-CceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----e
Confidence 76544432110 0 111111111 1223433 34455678999999999988876 444444432111 1
Q ss_pred EeeecCCCcEEEEEcCC--ceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeee
Q 016725 256 VVQALNDVKAIHVATGD--YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLT 333 (384)
Q Consensus 256 ~i~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~ 333 (384)
.+..-.+.+|+.+..-. .+.+++|++|.+--.--..+-..+.+. .-...-.+...+..++.+..+
T Consensus 191 ~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~-------------~G~~~~~l~~~~d~lv~~~~~ 257 (327)
T 3uc1_A 191 GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG-------------KGVLTVMYDRRRGRLVGALIV 257 (327)
T ss_dssp SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS-------------CCEESSCCCTTTCSEEEEEEE
T ss_pred eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC-------------CcEEEEEecCCCCeEEEEEEe
Confidence 12223456777766543 457778888866654333222111110 000000111112334444331
Q ss_pred ccccccceEEEEeCCCCEEEEeCCCCCCCC
Q 016725 334 NSIYWNAHTFALTESGKLYAFGAGDKGQLG 363 (384)
Q Consensus 334 ~~~~G~~~~~~lt~~g~l~~~G~n~~g~lg 363 (384)
. +....+++|++|++..+-.++--.+|
T Consensus 258 ~---~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 258 D---DDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp C---TTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred C---CCccEEEEcCCCeEEEEehhhccccC
Confidence 1 66789999999999888554433333
No 45
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=75.25 E-value=42 Score=29.41 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=12.5
Q ss_pred CcceEEEeCCCCEEEEeCC
Q 016725 220 AWHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~n 238 (384)
..|+++. .++++|++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4466655 56789999853
No 46
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=74.88 E-value=42 Score=29.20 Aligned_cols=206 Identities=10% Similarity=-0.090 Sum_probs=101.9
Q ss_pred CcEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC--CC-eEEEEEcCCC
Q 016725 47 IRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NF-FTAVLSREGR 121 (384)
Q Consensus 47 ~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G--~~-~~~~lt~~G~ 121 (384)
..|..++.. ....++-..||.|+.|-..... .. ..+..+.. ....|..++.. .. ..+.-..+|.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KN--VDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TE--EEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------cc--ccceeeee-cCCceEEEEECCCCCcEEEEEcCCCe
Confidence 356666543 3345555678989888654321 00 00111111 12346666543 34 5666677889
Q ss_pred EEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCe
Q 016725 122 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPR 201 (384)
Q Consensus 122 vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~ 201 (384)
|+.|-....+++ ..+........|..++... ...+++...+| .|+.|-......- . ......
T Consensus 81 i~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~-~i~iwd~~~~~~~---~--~~~~~~ 142 (342)
T 1yfq_A 81 ILKVDLIGSPSF-----------QALTNNEANLGICRICKYG-DDKLIAASWDG-LIEVIDPRNYGDG---V--IAVKNL 142 (342)
T ss_dssp EEEECSSSSSSE-----------EECBSCCCCSCEEEEEEET-TTEEEEEETTS-EEEEECHHHHTTB---C--EEEEES
T ss_pred EEEEEeccCCce-----------EeccccCCCCceEEEEeCC-CCEEEEEcCCC-eEEEEcccccccc---c--ccccCC
Confidence 998854122211 1111100344577777665 33444444488 9999954321000 0 000000
Q ss_pred EEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC---CceEEEE
Q 016725 202 LIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG---DYTTFVV 278 (384)
Q Consensus 202 ~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~l 278 (384)
.+..+. ....+..++......++...+|.|+.|-....+. .............|..+... ....++-
T Consensus 143 ~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 143 NSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred eeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 000111 2234566666666667778899999997654110 11112222223345555544 3455566
Q ss_pred ecCCCEEEEeCCC
Q 016725 279 SEDGDVYSFGCGE 291 (384)
Q Consensus 279 t~~g~vy~wG~n~ 291 (384)
..+|.+..|-...
T Consensus 213 ~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 213 SIDGRVAVEFFDD 225 (342)
T ss_dssp ETTSEEEEEECCT
T ss_pred ecCCcEEEEEEcC
Confidence 7889999987654
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=74.35 E-value=40 Score=28.75 Aligned_cols=230 Identities=9% Similarity=-0.057 Sum_probs=114.4
Q ss_pred cEEEEEe--CCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEE
Q 016725 48 RIIQAAA--GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 125 (384)
Q Consensus 48 ~i~~i~~--G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~ 125 (384)
.|..++. .....+.-..||.|..|--..... ..+..........|..++......+.-..+|.|+.|
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-----------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW 129 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-----------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-----------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence 4544433 344555556677777775433210 011111111234578888767777788889999988
Q ss_pred EcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEe
Q 016725 126 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE 204 (384)
Q Consensus 126 G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~ 204 (384)
- .+ .....+. .....+..+.... ....+++...+| .|+.|-. ...+.
T Consensus 130 d---~~----------~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~----------------~~~~~ 177 (313)
T 3odt_A 130 K---EG----------SLVYNLQ--AHNASVWDAKVVSFSENKFLTASADK-TIKLWQN----------------DKVIK 177 (313)
T ss_dssp E---TT----------EEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTS-CEEEEET----------------TEEEE
T ss_pred c---CC----------cEEEecc--cCCCceeEEEEccCCCCEEEEEECCC-CEEEEec----------------CceEE
Confidence 4 11 0111111 2233465555532 222233333377 9999841 11111
Q ss_pred eccc-CCCCcEEEEcCCc-ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCc-eEEEEecC
Q 016725 205 QFQL-LNLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSED 281 (384)
Q Consensus 205 ~~~~-~~~~i~~i~~g~~-~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~ 281 (384)
.+.. ....+..++.... ..++...+|.++.|-..... ....+. .....|..+....+ ..++-..+
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d 245 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-----------VLRTYE-GHESFVYCIKLLPNGDIVSCGED 245 (313)
T ss_dssp EECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSCEEEEETT
T ss_pred EEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-----------hhhhhh-cCCceEEEEEEecCCCEEEEecC
Confidence 1111 2223444333222 25566788999999754311 011121 12234665554433 45566788
Q ss_pred CCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCC
Q 016725 282 GDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 358 (384)
Q Consensus 282 g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~ 358 (384)
|.|+.|-.... ..+..+......|..++.. -+...++-..+|.|+.|-...
T Consensus 246 g~v~iwd~~~~----------------------~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 246 RTVRIWSKENG----------------------SLKQVITLPAISIWSVDCM----SNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp SEEEEECTTTC----------------------CEEEEEECSSSCEEEEEEC----TTSCEEEEETTSCEEEEESCG
T ss_pred CEEEEEECCCC----------------------ceeEEEeccCceEEEEEEc----cCCCEEEEeCCCcEEEEeCCC
Confidence 88998864321 1112222234456666651 122355567899999997654
No 48
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=73.45 E-value=40 Score=28.30 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=11.0
Q ss_pred eEEEEecCCCEEEEeC
Q 016725 274 TTFVVSEDGDVYSFGC 289 (384)
Q Consensus 274 ~~~~lt~~g~vy~wG~ 289 (384)
..++++.+|++|+...
T Consensus 195 ~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEEECTTCCEEEEET
T ss_pred eEEEECCCCCEEEEEC
Confidence 4567777778877654
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=72.64 E-value=55 Score=29.54 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcCCCEEEEEcCCCCcc
Q 016725 56 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARL 133 (384)
Q Consensus 56 ~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~G~vy~~G~n~~gql 133 (384)
....+.-..||.|..|-... .. +..........|..++.... +.+.-..||.|+.|-......
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~----------~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~- 173 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNF----------NL----QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN- 173 (420)
T ss_dssp SCEEEEEETTSCEEEECTTS----------CE----EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-
T ss_pred CCEEEEEECCCCEEEEeCCC----------cc----eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-
Confidence 34455556778888885332 11 11111112345777776433 455567788999886543211
Q ss_pred cCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecC
Q 016725 134 GHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 184 (384)
Q Consensus 134 g~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 184 (384)
...+. .....|..++.......+++...+| .|+.|-..
T Consensus 174 ----------~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~ 211 (420)
T 3vl1_A 174 ----------PRTLI--GHRATVTDIAIIDRGRNVLSASLDG-TIRLWECG 211 (420)
T ss_dssp ----------CEEEE--CCSSCEEEEEEETTTTEEEEEETTS-CEEEEETT
T ss_pred ----------ceEEc--CCCCcEEEEEEcCCCCEEEEEcCCC-cEEEeECC
Confidence 11111 1234577777766555555555578 89999643
No 50
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=71.90 E-value=48 Score=28.59 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=74.3
Q ss_pred CcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcCCCE
Q 016725 47 IRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRV 122 (384)
Q Consensus 47 ~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~G~v 122 (384)
..|..++... ...+.-..||.|..|-...... .. .+.. ....|..++.... ..+.-..||.|
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----------~~---~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i 131 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----------LK---TLKG-HSNYVFCCNFNPQSNLIVSGSFDESV 131 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----------EE---EEEC-CSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE----------EE---EEcC-CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 3566665543 3444455778888886543110 00 1111 1223555554333 44445678888
Q ss_pred EEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeE
Q 016725 123 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 202 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 202 (384)
+.|-...... ...+. .....|..++.......+++...+| .|+.|-......+ ..
T Consensus 132 ~iwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~-----------~~ 186 (312)
T 4ery_A 132 RIWDVKTGKC-----------LKTLP--AHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCL-----------KT 186 (312)
T ss_dssp EEEETTTCCE-----------EEEEC--CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEE-----------EE
T ss_pred EEEECCCCEE-----------EEEec--CCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcee-----------eE
Confidence 8885432110 11111 2234577777665554555554588 8999854321110 11
Q ss_pred EeecccCCCCcEEEEc--CCcceEEEeCCCCEEEEeCCC
Q 016725 203 IEQFQLLNLQPVVVAA--GAWHAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 203 i~~~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~n~ 239 (384)
+. ......+..++. ...+.++-..+|.|+.|-...
T Consensus 187 ~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 187 LI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred Ee--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 11 111223333333 333456667889999997543
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=70.89 E-value=51 Score=28.44 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=95.8
Q ss_pred CcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcCCCE
Q 016725 47 IRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRV 122 (384)
Q Consensus 47 ~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~G~v 122 (384)
..|..++... ...+.-..||.|..|...... .. ..+.. ....|..++.... ..+.-..||.|
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----------~~---~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----------FE---KTISG-HKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------EE---EEECC-CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------cc---hhhcc-CCCceEEEEEcCCCCEEEEECCCCEE
Confidence 3566665543 345555678999999754311 00 11111 1234666665443 44455678888
Q ss_pred EEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeE
Q 016725 123 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 202 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 202 (384)
..|-...... ...+. .....|..++.......+++-..+| .|+.|-.... ..
T Consensus 90 ~vwd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~--------------~~ 141 (312)
T 4ery_A 90 KIWDVSSGKC-----------LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVKTG--------------KC 141 (312)
T ss_dssp EEEETTTCCE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTS-CEEEEETTTC--------------CE
T ss_pred EEEECCCCcE-----------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC--------------EE
Confidence 8885433211 11111 1233466666655555555554578 8999854321 11
Q ss_pred EeecccCCCCcEEEEcCC--cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEE--EcCCceEEEE
Q 016725 203 IEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHV--ATGDYTTFVV 278 (384)
Q Consensus 203 i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~l 278 (384)
+..+......|..++... ...+.-..+|.+.+|-...... ...+.......+..+ .......++-
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----------LKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eeEEeccCCCceEEEEECCCCCEEEEE
Confidence 222222233455544432 3344556788899886543110 111111112233333 3334556666
Q ss_pred ecCCCEEEEeCC
Q 016725 279 SEDGDVYSFGCG 290 (384)
Q Consensus 279 t~~g~vy~wG~n 290 (384)
+.+|.|..|-..
T Consensus 211 ~~d~~i~iwd~~ 222 (312)
T 4ery_A 211 TLDNTLKLWDYS 222 (312)
T ss_dssp ETTTEEEEEETT
T ss_pred cCCCeEEEEECC
Confidence 788999998753
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.71 E-value=90 Score=31.21 Aligned_cols=194 Identities=12% Similarity=-0.000 Sum_probs=95.9
Q ss_pred cEEEEEe--CCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcCCCEE
Q 016725 48 RIIQAAA--GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVY 123 (384)
Q Consensus 48 ~i~~i~~--G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~G~vy 123 (384)
.|..++. .....++-..||.|+.|-...... . ..+.. ....|..++.... +.+.-..||.|.
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------~---~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----------V---VDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE----------E---EEEEC-CSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----------E---EEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 4555543 344566667788899986543211 0 01111 1234666665433 445566788888
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeE
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 202 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 202 (384)
.|-...... ....+. .....|..++... ....+++...+| .|+.|-.... .....
T Consensus 123 vw~~~~~~~----------~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~~~~-----------~~~~~ 178 (814)
T 3mkq_A 123 LWNWENNWA----------LEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQS-----------TPNFT 178 (814)
T ss_dssp EEEGGGTSE----------EEEEEE--CCSSCEEEEEEETTEEEEEEEEETTS-EEEEEETTCS-----------SCSEE
T ss_pred EEECCCCce----------EEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEECCCC-----------cceeE
Confidence 886543211 111111 2234577777654 333344333478 9999964321 11222
Q ss_pred EeecccCCCCcEEEEc--CCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEE
Q 016725 203 IEQFQLLNLQPVVVAA--GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVV 278 (384)
Q Consensus 203 i~~~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l 278 (384)
+.............+. .....++-..+|.|+.|-.... .....+.. ....|..+... ....+.-
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEE
T ss_pred EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEE
Confidence 2221111222223332 3334555568889999964321 01112221 12245555433 3345556
Q ss_pred ecCCCEEEEeCCC
Q 016725 279 SEDGDVYSFGCGE 291 (384)
Q Consensus 279 t~~g~vy~wG~n~ 291 (384)
..+|.|+.|-...
T Consensus 247 ~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 247 SEDGTLKIWNSST 259 (814)
T ss_dssp ETTSCEEEEETTT
T ss_pred eCCCeEEEEECCC
Confidence 7789999997543
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=70.11 E-value=54 Score=28.39 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=34.1
Q ss_pred CCcEEEEcCCc--ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC-CceEEEEecCCCEEEE
Q 016725 211 LQPVVVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTTFVVSEDGDVYSF 287 (384)
Q Consensus 211 ~~i~~i~~g~~--~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~lt~~g~vy~w 287 (384)
..|..++.... ..+.-..||.+..|-.....++ ..+.. ...|..+... ....++...++.|+.|
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iw 282 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YTLDG--GDIINALCFSPNRYWLCAATGPSIKIW 282 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EEEEC--SSCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------eeecC--CceEEeeecCCCCceeeccCCCEEEEE
Confidence 34555554433 3344467888888865432111 11111 1234333332 3445566778888888
Q ss_pred eCC
Q 016725 288 GCG 290 (384)
Q Consensus 288 G~n 290 (384)
-..
T Consensus 283 d~~ 285 (340)
T 4aow_A 283 DLE 285 (340)
T ss_dssp ETT
T ss_pred ECC
Confidence 643
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=66.66 E-value=77 Score=28.85 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=61.4
Q ss_pred CCcEEEEEeCC--CeeEEEEcCCCEEEEecC--CCCCcccCCCCceeeecCEEecCC------CCCcEEEEEeC----CC
Q 016725 46 GIRIIQAAAGA--GRTMLISDAGQVYAFGKD--SFGEAEYGVQGTKLVTSPQLVESL------KNIFVVQAAIG----NF 111 (384)
Q Consensus 46 ~~~i~~i~~G~--~~~~~lt~~g~vy~~G~n--~~gqlG~~~~~~~~~~~p~~i~~~------~~~~i~~I~~G----~~ 111 (384)
...|..|+... ...+.-..||.|..|-.. ..+++ ........+..+ ....+..+..- ..
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-------VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-------EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-------eeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 34677776643 445556678888888542 11111 110110111100 23345555422 34
Q ss_pred eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecC
Q 016725 112 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 184 (384)
Q Consensus 112 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 184 (384)
..+.-..||.|+.|-..... ....+..+.....|..++.......+++-..+| .|+.|-..
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~ 244 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTRG-IIDIWDIR 244 (437)
T ss_dssp EEEEEETTSEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-CEEEEETT
T ss_pred EEEEEeCCCeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-eEEEEEcC
Confidence 55666778888888643321 111111111234588888766655555555588 99999543
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=65.31 E-value=76 Score=28.32 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=53.8
Q ss_pred CeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc-ceEEEeCCCCEE
Q 016725 155 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-HAAVVGQDGRVC 233 (384)
Q Consensus 155 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-~~~~lt~~g~vy 233 (384)
.|..++.......+++...+| .|+.|-.... .....+.. ....|..++.... ..++...+|.|+
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~-----------~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~d~~i~ 313 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDG-TLRIWHGGNG-----------NSQNCFYG---HSQSIVSASWVGDDKVISCSMDGSVR 313 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTS-CEEEECSSSB-----------SCSEEECC---CSSCEEEEEEETTTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEcCCC-EEEEEECCCC-----------ccceEecC---CCccEEEEEECCCCEEEEEeCCCcEE
Confidence 455565554443344433466 7777743211 11112211 2234444444333 455567888899
Q ss_pred EEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEEecCCCEEEEeCC
Q 016725 234 TWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 234 ~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n 290 (384)
+|-..... +..........|..+... ....++-..+|.|+.|-..
T Consensus 314 i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 314 LWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 98654311 111111123345555543 3455556778999999753
No 56
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=65.02 E-value=80 Score=28.46 Aligned_cols=118 Identities=10% Similarity=-0.067 Sum_probs=64.6
Q ss_pred CcEEEEEeC---CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC---eEEEEEcCC
Q 016725 47 IRIIQAAAG---AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF---FTAVLSREG 120 (384)
Q Consensus 47 ~~i~~i~~G---~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~---~~~~lt~~G 120 (384)
..|..++.. ....+.-..||.|..|-....+... ....|..........|..|+.... ..+.-..||
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 467777764 4455556678999999765532211 111121111112345777776544 445557789
Q ss_pred CEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEec
Q 016725 121 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 183 (384)
Q Consensus 121 ~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 183 (384)
.|+.|-..... ....+........|..++.......+++...+| .|+.|-.
T Consensus 155 ~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~ 205 (402)
T 2aq5_A 155 VILVWDVGTGA-----------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK-RVRVIEP 205 (402)
T ss_dssp CEEEEETTTTE-----------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTS-EEEEEET
T ss_pred EEEEEECCCCC-----------ccEEEecCCCCCceEEEEECCCCCEEEEEecCC-cEEEEeC
Confidence 99999654321 111110002234577777765544455444588 9999964
No 57
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=63.71 E-value=39 Score=29.65 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=11.6
Q ss_pred cceEEEeCCCCEEEEeC
Q 016725 221 WHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 221 ~~~~~lt~~g~vy~wG~ 237 (384)
.|+++.. ++++|++|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4665554 779999985
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=63.33 E-value=86 Score=28.29 Aligned_cols=120 Identities=14% Similarity=-0.010 Sum_probs=56.5
Q ss_pred cEEEEEeCCC--eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEE
Q 016725 102 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 179 (384)
Q Consensus 102 ~i~~I~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 179 (384)
.|..++.... +.+.-..||.|..|-.................. .....-....|..++.......+++-..+| .|+
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v~ 335 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC-EVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVL 335 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE-EEEEECCSSCEEEEEECGGGCEEEEEETTS-EEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc-eEEEecccCcEEEEEECCCCCEEEEEeCCC-eEE
Confidence 4777776443 445556788888886543221110000000000 000001233467777766555555555588 999
Q ss_pred EEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC--------cceEEEeCCCCEEEEeC
Q 016725 180 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--------WHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 180 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--------~~~~~lt~~g~vy~wG~ 237 (384)
.|-.... ..+..+..-...|..++... ...+.-..||.|.+|-.
T Consensus 336 iwd~~~~--------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 336 FWDKKSG--------------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEETTTC--------------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEECCCC--------------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 9954321 11222222333455665432 22333457888888853
No 59
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=62.80 E-value=84 Score=27.99 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=61.1
Q ss_pred cEEEEEeCC-CeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEE
Q 016725 102 FVVQAAIGN-FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 180 (384)
Q Consensus 102 ~i~~I~~G~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 180 (384)
.|.+++... ...+.-..||.|..|-......+ ........ -....|..++....-..+++-..+| .|..
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d~-~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETL--------IVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKDI-CIKV 153 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTS-CEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEeecccc-CCCCCEEEEEECCCCCEEEEEeCCC-eEEE
Confidence 366776533 45555677888888854332110 11111100 1234577787766666666655588 8999
Q ss_pred EecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc--c-eEEEeCCCCEEEEeCC
Q 016725 181 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--H-AAVVGQDGRVCTWGWG 238 (384)
Q Consensus 181 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--~-~~~lt~~g~vy~wG~n 238 (384)
|-... ...+..+..-...|..++.... + .+.-..||.|.+|-..
T Consensus 154 wd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~ 200 (344)
T 4gqb_B 154 WDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200 (344)
T ss_dssp EETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence 95422 2233333323345666655433 2 2334678999999543
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=62.59 E-value=84 Score=27.88 Aligned_cols=212 Identities=9% Similarity=-0.010 Sum_probs=103.6
Q ss_pred CCCcEEEEEeCC---CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCE-Eec----CCCCCcEEEEEeC---CCeE
Q 016725 45 QGIRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQ-LVE----SLKNIFVVQAAIG---NFFT 113 (384)
Q Consensus 45 ~~~~i~~i~~G~---~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~-~i~----~~~~~~i~~I~~G---~~~~ 113 (384)
....|..++... ...+.-..||.|..|-........ .....+. .+. ......|..++.. ....
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS------YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS------CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc------eEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 445787777654 455556679999999765432211 1111100 000 1123458888764 3456
Q ss_pred EEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC---CceeEEEeeCCCCEEEEEecCCCCccc
Q 016725 114 AVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLG 190 (384)
Q Consensus 114 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~---~~~~~l~~~~~G~~vy~~G~n~~gqlg 190 (384)
+.-..+|.|..|-...... ...+. ....+..+.... ...+++....+| .|+.|-.....
T Consensus 116 ~s~~~d~~i~iwd~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~~--- 177 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQT-----------ADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDLKSGS--- 177 (408)
T ss_dssp EEEETTSEEEEEETTTTEE-----------EEEEE---CSSCEEEEEECSSCSSCCEEEEEESSS-SEEEEESSSSC---
T ss_pred EEEeCCCeEEEeeCCCCcc-----------ceecc---CCCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeCCCcc---
Confidence 6667799999986543211 01111 122345555433 222333333477 99999653211
Q ss_pred CCCCCCCCCCeEEeecccCCCCcEEEEcCCc--c-eEEEeCCCCEEEEeCCCCCcc-CCC---CCCCccCcEEeeecCCC
Q 016725 191 HGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--H-AAVVGQDGRVCTWGWGRYGCL-GHG---NEECESVPKVVQALNDV 263 (384)
Q Consensus 191 ~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--~-~~~lt~~g~vy~wG~n~~gql-g~~---~~~~~~~p~~i~~~~~~ 263 (384)
....+.. ....|..++.... + .+.-..+|.|+.|-....... -.- .......+.........
T Consensus 178 --------~~~~~~~---~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 178 --------CSHILQG---HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp --------CCEEECC---CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred --------eeeeecC---CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 1122221 2334555554433 2 445578999999976542211 000 00000000000011123
Q ss_pred cEEEEEcC--CceEEEEecCCCEEEEeCCC
Q 016725 264 KAIHVATG--DYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 264 ~i~~i~~g--~~~~~~lt~~g~vy~wG~n~ 291 (384)
.|..+... ..+.++...+|.|+.|-...
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 45555543 34566677899999998654
No 61
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.27 E-value=80 Score=27.54 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=116.7
Q ss_pred CCCcEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC---CCeEEEEEcC
Q 016725 45 QGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSRE 119 (384)
Q Consensus 45 ~~~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G---~~~~~~lt~~ 119 (384)
++..+..+... ..+.+++|++|++|..--...-. .... . + ...+++|+.+.+- ....+++|.+
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~-------~~~~-~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ-------GSKV-S---L-KSREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT-------SEEC-C---C-SSTTCCEEEEEEGGGSCSEEEEEETT
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc-------Cccc-c---c-CCCCCEEEEEECCcCCCCEEEEEeCC
Confidence 55567666544 44588999999999865433210 0000 1 3 3347789988772 2467889999
Q ss_pred CCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE--eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCC
Q 016725 120 GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE 197 (384)
Q Consensus 120 G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~ 197 (384)
|.+.-.-...+-+ ... -..-+.. -++..++.+.. +....++++. +| ++|.+-..+.-.++....-..
T Consensus 90 G~iKr~~l~~~~~-----~~~--G~~~i~l-kegD~l~~~~~~~~~~~ill~T~--~G-~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 90 GYVKKIPLAEFEY-----KAQ--GMPIIKL-TEGDEVVSIASSVDETHILLFTK--KG-RVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp SEEEEEEGGGTTT-----CST--TEECSCC-CTTCCEEEEEECCSSCEEEEEET--TS-EEEEEEGGGSCBCCTTCCCEE
T ss_pred CEEEEEEHHHhhh-----hcC--CeEEEec-CCCCEEEEEEEeCCCCEEEEEEC--CC-EEEEEEhhhCCCcCCCCCCEE
Confidence 9888665444321 000 1111111 12334555544 4445777776 88 999998766555544322111
Q ss_pred CCCeEEeecccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEE--cCCc
Q 016725 198 KHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA--TGDY 273 (384)
Q Consensus 198 ~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~--~g~~ 273 (384)
.+ .+. .+.+|+.+... ..+.+++|++|...-.-...+...+.+..-.... ..+.+++.+. .+.+
T Consensus 159 ----~i-~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~ 226 (276)
T 3no0_A 159 ----GI-KLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEV 226 (276)
T ss_dssp ----CC-CCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEE
T ss_pred ----EE-ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCC
Confidence 01 111 23466655443 3357888999987776655443333322110000 1222344332 3556
Q ss_pred eEEEEecCCCEEE--EeCCCC
Q 016725 274 TTFVVSEDGDVYS--FGCGES 292 (384)
Q Consensus 274 ~~~~lt~~g~vy~--wG~n~~ 292 (384)
..+++|++|++.. +-....
T Consensus 227 ~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 227 ELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEEEETTSCEEEEEEEGGGS
T ss_pred EEEEEcCCCeEEEeeeCHHHC
Confidence 7888999999998 765443
No 62
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=61.79 E-value=97 Score=28.36 Aligned_cols=266 Identities=8% Similarity=-0.005 Sum_probs=122.2
Q ss_pred cEEEEEeCC---CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCE-EecCCCCCcEEEEEeCC---CeEEEEEcCC
Q 016725 48 RIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQ-LVESLKNIFVVQAAIGN---FFTAVLSREG 120 (384)
Q Consensus 48 ~i~~i~~G~---~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~-~i~~~~~~~i~~I~~G~---~~~~~lt~~G 120 (384)
.|..++... ...+.-..+|.|+.|-.......-. ......+. .+.. ....|..++... .+.+.-..+|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----PSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----TTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTS
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC----ccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 455555443 2344445689999998754311100 00001111 1111 122344454432 2555566788
Q ss_pred CEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCC
Q 016725 121 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 199 (384)
Q Consensus 121 ~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 199 (384)
.|+.|-........ ....+..... .....|..++... ...++++...+| .|+.|-...... ...
T Consensus 205 ~i~vwd~~~~~~~~-----~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~--------~~~ 269 (430)
T 2xyi_A 205 TICLWDINATPKEH-----RVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNT--------SKP 269 (430)
T ss_dssp CEEEEETTSCCBGG-----GEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCS--------SSC
T ss_pred eEEEEeCCCCCCCC-----ceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCC--------Ccc
Confidence 99998766532110 0011111111 2234577777754 333333333478 999996643210 011
Q ss_pred CeEEeecccCCCCcEEEEcCCc--c-eEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCC---c
Q 016725 200 PRLIEQFQLLNLQPVVVAAGAW--H-AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD---Y 273 (384)
Q Consensus 200 p~~i~~~~~~~~~i~~i~~g~~--~-~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~ 273 (384)
...+.. ....|..++.... + .+.-..+|.|.+|-.....+ ....+. .....|..+.... .
T Consensus 270 ~~~~~~---~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~-~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 270 SHTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFE-SHKDEIFQVQWSPHNET 335 (430)
T ss_dssp SEEEEC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEE-CCSSCEEEEEECSSCTT
T ss_pred eeEeec---CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEee-cCCCCEEEEEECCCCCC
Confidence 111211 2334555554432 3 33446788899997654211 111221 1223466655443 2
Q ss_pred eEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEE
Q 016725 274 TTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYA 353 (384)
Q Consensus 274 ~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~ 353 (384)
..+.-..+|.|..|-....+..-... ......|..+.........|..++..+ .+....+....+|.|..
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTE--------DAEDGPPELLFIHGGHTAKISDFSWNP--NEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHH--------HHHHCCTTEEEECCCCSSCEEEEEECS--SSTTEEEEEETTSEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCccccCcc--------ccccCCcceEEEcCCCCCCceEEEECC--CCCCEEEEEECCCCEEE
Confidence 34455678999999765422110000 001111333433333445566666511 12224555567888888
Q ss_pred EeCC
Q 016725 354 FGAG 357 (384)
Q Consensus 354 ~G~n 357 (384)
|-.+
T Consensus 406 w~~~ 409 (430)
T 2xyi_A 406 WQMA 409 (430)
T ss_dssp EEEC
T ss_pred eEcc
Confidence 8664
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=60.74 E-value=99 Score=28.11 Aligned_cols=146 Identities=8% Similarity=-0.065 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCc
Q 016725 109 GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK 188 (384)
Q Consensus 109 G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq 188 (384)
+....+++-.|+.||.|-... |+ ....+...-....|..++.......+++-..|| .|..|-....
T Consensus 114 S~~n~lAvgld~tV~lWd~~t-g~----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-~v~iWd~~~~-- 179 (420)
T 4gga_A 114 SSGNVLAVALDNSVYLWSASS-GD----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-EVQLWDVQQQ-- 179 (420)
T ss_dssp CTTSEEEEEETTEEEEEETTT-CC----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-CEEEEETTTT--
T ss_pred CCCCEEEEEeCCEEEEEECCC-CC----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCC-eEEEEEcCCC--
Confidence 344567777789999995432 11 011111112234578888776655555555588 9999964321
Q ss_pred ccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeee-cCCCcEEE
Q 016725 189 LGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQA-LNDVKAIH 267 (384)
Q Consensus 189 lg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~~~i~~ 267 (384)
..+..+......+..++......+.-..++.++.|-...... ....+.. ........
T Consensus 180 ------------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----------~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 180 ------------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSGHSQEVCGLR 237 (420)
T ss_dssp ------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCSSCEEEEE
T ss_pred ------------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce----------eeEEecccccceeeee
Confidence 222222223334555555444444456777777775432110 0011111 11112222
Q ss_pred EEcCCceEEEEecCCCEEEEeCC
Q 016725 268 VATGDYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 268 i~~g~~~~~~lt~~g~vy~wG~n 290 (384)
........+....||.+..|-..
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESS
T ss_pred ecCCCCeeeeeeccccceEEeec
Confidence 33334555666788999988754
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=60.16 E-value=94 Score=27.68 Aligned_cols=150 Identities=12% Similarity=-0.066 Sum_probs=73.0
Q ss_pred cEEEEEeCC---CeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCC-ceeEEEeeCCCCE
Q 016725 102 FVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC-YLLALACQPSGMA 177 (384)
Q Consensus 102 ~i~~I~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~-~~~~l~~~~~G~~ 177 (384)
.|..|+... ...+.-..||.|..|-..... ....+.....+..+..++.... ..++++-..++ .
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-----------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-~ 250 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-----------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-N 250 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-----------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-C
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCc-----------eeeeeeeccccccccchhhhhcccceEEEeeccc-c
Confidence 477776532 345556778888887332211 0011111122334666766432 22232222377 8
Q ss_pred EEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC---cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCc
Q 016725 178 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 254 (384)
Q Consensus 178 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p 254 (384)
|+.|-.... .....+ ......|..++... ...+.-..||.|++|-... +
T Consensus 251 i~~wd~~~~-----------~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~------------- 302 (357)
T 4g56_B 251 VSLVNIKNP-----------DSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-S------------- 302 (357)
T ss_dssp EEEEESSCG-----------GGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-C-------------
T ss_pred eeEEECCCC-----------cEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-C-------------
Confidence 999854221 111112 22334566665432 2233456889999995332 1
Q ss_pred EEeeecC-CCcEEEEEcC---CceEEEEecCCCEEEEeCCC
Q 016725 255 KVVQALN-DVKAIHVATG---DYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 255 ~~i~~~~-~~~i~~i~~g---~~~~~~lt~~g~vy~wG~n~ 291 (384)
+.+..+. ...|..|+-. ....+.-..||.|+.|--..
T Consensus 303 ~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 303 EVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred cEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 1122121 2246666543 23333456789999997543
No 65
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=59.58 E-value=61 Score=25.30 Aligned_cols=109 Identities=14% Similarity=0.002 Sum_probs=62.4
Q ss_pred CCCcEEEEEeCC-CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC-CCeEEEEEcCCCE
Q 016725 45 QGIRIIQAAAGA-GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG-NFFTAVLSREGRV 122 (384)
Q Consensus 45 ~~~~i~~i~~G~-~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G-~~~~~~lt~~G~v 122 (384)
++.+.+++-|-. .+.+-+..||.|-.-..... .....+...+. ..++.|.|- ..+.+++..+|+|
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~---------~~s~lei~sv~----~G~V~L~g~~sg~yL~mn~~G~l 94 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD---------THIQFQISPEG----NGEVLLKSTETGQYLRINPDGTV 94 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTC---------GGGCEEEEEEE----TTEEEEEETTTTEEEEECTTSBE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC---------CceEEEEEEcc----CCEEEEEEecCCEEEeECCCCCE
Confidence 456888999876 67888899999986544311 11111212221 237778775 4688889999999
Q ss_pred EEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE-eCCceeEEEeeCCCCEEEEE
Q 016725 123 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA-GYCYLLALACQPSGMAVYSV 181 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~-g~~~~~~l~~~~~G~~vy~~ 181 (384)
| |..... ....+..+. ..+.-.+.+.. -....+++.+ +| ++|+-
T Consensus 95 ~--Gs~~~t--------~ecsflEi~--~en~y~v~i~g~~sg~YLamnk--~G-rlygs 139 (142)
T 3p6j_A 95 D--GTRDRS--------DTHIQFQIS--PEGNGEVLLKSTETGQYLRINP--DG-TVDGT 139 (142)
T ss_dssp E--EECCTT--------CGGGCEEEE--ECSTTCEEEEETTTCCEEEECT--TS-BEEEE
T ss_pred e--ecccCC--------CCceEEEEE--eecCcEEEEEEecCCEEEEECC--Cc-CCccC
Confidence 9 543321 112222222 22333444443 2234666666 88 99863
No 66
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=58.53 E-value=1e+02 Score=27.62 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=115.9
Q ss_pred cEEEE--EeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC-----CeEEEEEcCC
Q 016725 48 RIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREG 120 (384)
Q Consensus 48 ~i~~i--~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~-----~~~~~lt~~G 120 (384)
.+..+ +....+.+++|+.|++|..-....-..+... .-.+....+....+++|+.+.+.. ...+++|++|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~---~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA---RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS---CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC---CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 44444 5566778889999999998765543332221 111111223333577899887654 3678899999
Q ss_pred CEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE--eCCceeEEEeeCCCCEEEEEecC--CCCcccCCCCCC
Q 016725 121 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCG--LGGKLGHGSRTD 196 (384)
Q Consensus 121 ~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n--~~gqlg~~~~~~ 196 (384)
.+.-.-...+-.. ...-..-+.. -++..++.+.. +..+.++++. +| ++|.+-.. +--.++....-
T Consensus 120 ~iKr~~l~~~~~~------~r~G~~~i~l-ke~D~lv~~~~~~~~d~ill~T~--~G-~~~rf~~~~~eip~~gr~a~G- 188 (327)
T 3uc1_A 120 LVKKSKLTDFDSN------RSGGIVAVNL-RDNDELVGAVLCSAGDDLLLVSA--NG-QSIRFSATDEALRPMGRATSG- 188 (327)
T ss_dssp EEEEEEGGGGCCC------CSSCEESCBC-CTTCCEEEEEEECTTCEEEEEET--TS-EEEEEECCTTTSCCCCTTSBC-
T ss_pred EEEEeEHHHhhcc------ccCceEEEEE-CCCCEEEEEEEecCCCEEEEEEC--CC-eEEEEECcccccCcCCcCCCC-
Confidence 8876544332110 0000111111 12334554433 5566777776 88 99999876 54444433211
Q ss_pred CCCCeEEeecccCCCCcEEEEcCC--cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecC-CCcEEEE--EcC
Q 016725 197 EKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN-DVKAIHV--ATG 271 (384)
Q Consensus 197 ~~~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-~~~i~~i--~~g 271 (384)
..+-.+. .+.+|+.+..-. .+.+.+|++|.+.-.-...+...+.+..-.. -+.... +..++.+ ..+
T Consensus 189 ----v~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~----~~~l~~~~d~lv~~~~~~~ 259 (327)
T 3uc1_A 189 ----VQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL----TVMYDRRRGRLVGALIVDD 259 (327)
T ss_dssp ----EESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE----SSCCCTTTCSEEEEEEECT
T ss_pred ----eeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE----EEEecCCCCeEEEEEEeCC
Confidence 1111111 345677665543 3577788888665544333322222110000 000001 1223333 245
Q ss_pred CceEEEEecCCCEEEEeCCCC
Q 016725 272 DYTTFVVSEDGDVYSFGCGES 292 (384)
Q Consensus 272 ~~~~~~lt~~g~vy~wG~n~~ 292 (384)
....+++|++|++..+-....
T Consensus 260 ~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 260 DSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp TCEEEEEEGGGCEEEEEGGGS
T ss_pred CccEEEEcCCCeEEEEehhhc
Confidence 678899999999998865443
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=58.19 E-value=95 Score=27.12 Aligned_cols=201 Identities=12% Similarity=-0.034 Sum_probs=101.8
Q ss_pred CcEEEEEeC----CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC----CeEEEEEc
Q 016725 47 IRIIQAAAG----AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSR 118 (384)
Q Consensus 47 ~~i~~i~~G----~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~----~~~~~lt~ 118 (384)
..|..++.. ....+.-..||.|..|-.... . ..+..........|..++... ...+....
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------R--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT----------E--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC----------c--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence 467777764 456666678899999965331 1 001111111233577777653 35666788
Q ss_pred CCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-------------CceeEEEeeCCCCEEEEEecCC
Q 016725 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGL 185 (384)
Q Consensus 119 ~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-------------~~~~~l~~~~~G~~vy~~G~n~ 185 (384)
+|.|..|-...... .....+. .....|..++... +...+++-..+| .|+.|-...
T Consensus 124 d~~i~v~d~~~~~~---------~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~ 191 (379)
T 3jrp_A 124 DGKVSVVEFKENGT---------TSPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNS 191 (379)
T ss_dssp TSEEEEEECCTTSC---------CCEEEEE--CCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEET
T ss_pred CCcEEEEecCCCCc---------eeeEEec--CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecC
Confidence 89999886543211 0111111 2233466666654 233333333477 899985432
Q ss_pred CCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCC-----cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec
Q 016725 186 GGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-----WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL 260 (384)
Q Consensus 186 ~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~ 260 (384)
. ......+..+......|..++... ...+....||.+++|-...... .....+...
T Consensus 192 ~----------~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~ 252 (379)
T 3jrp_A 192 D----------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKE 252 (379)
T ss_dssp T----------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSS
T ss_pred C----------CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeecc
Confidence 1 011112222222334555665543 3455556899999997543110 000111111
Q ss_pred --CCCcEEEEEc--CCceEEEEecCCCEEEEeCC
Q 016725 261 --NDVKAIHVAT--GDYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 261 --~~~~i~~i~~--g~~~~~~lt~~g~vy~wG~n 290 (384)
....|..++. -....++-..+|.|+.|-..
T Consensus 253 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 1224554443 33445556788999999754
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=57.78 E-value=88 Score=26.59 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=36.1
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEEcCCCEEEE
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTF 125 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt~~G~vy~~ 125 (384)
+.++-+.+ ..+++-.|+.|+.|-.... + .... ..... ....|..|+.... +.+.-..||.|..|
T Consensus 29 ~~l~WS~~--~~lAvg~D~tV~iWd~~tg-~---------~~~~-~~~~~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 29 NLVDWSSG--NVLAVALDNSVYLWSASSG-D---------ILQL-LQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLW 94 (318)
T ss_dssp BCEEECTT--SEEEEEETTEEEEEETTTC-C---------EEEE-EECCS-TTCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEECCC--CEEEEEeCCEEEEEECCCC-C---------EEEE-EEecC-CCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 34555543 4667777999999964331 1 1000 01111 1234777766444 34445678888888
Q ss_pred EcC
Q 016725 126 SWG 128 (384)
Q Consensus 126 G~n 128 (384)
-..
T Consensus 95 ~~~ 97 (318)
T 4ggc_A 95 DVQ 97 (318)
T ss_dssp ETT
T ss_pred ecC
Confidence 544
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=56.26 E-value=1e+02 Score=26.78 Aligned_cols=195 Identities=9% Similarity=-0.032 Sum_probs=104.3
Q ss_pred CCCcEEEEEeCCC-----eeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEE
Q 016725 45 QGIRIIQAAAGAG-----RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLS 117 (384)
Q Consensus 45 ~~~~i~~i~~G~~-----~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt 117 (384)
....|..|+.... ..+.-..||.|..|-....++ .. ...+.. ....|..++.... +.+.-.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~---~~~~~~-h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TI---PKAQQM-HTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EE---EEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------ee---EEEecc-ccCCEEEEEECcCCCEEEEEc
Confidence 3457888877654 455556789999997654221 10 011111 1334777766433 555667
Q ss_pred cCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE--eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCC
Q 016725 118 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 195 (384)
Q Consensus 118 ~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 195 (384)
.||.|..|-..... ...+. .....|..++. ......+++...+| .|+.|=....
T Consensus 106 ~dg~v~iwd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~--------- 161 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSS--------- 161 (368)
T ss_dssp TTSEEEEEETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCS---------
T ss_pred CCCcEEEEEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCC---------
Confidence 78999988654321 11111 23445777776 55554455544578 9999954321
Q ss_pred CCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec--CCCcEEEEEcCCc
Q 016725 196 DEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDY 273 (384)
Q Consensus 196 ~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~ 273 (384)
.....+.. ...+..+..-....++...++.++.|-...... ....+... ....+..+.....
T Consensus 162 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 162 --NPMMVLQL----PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp --SCSEEEEC----SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTT
T ss_pred --cEEEEEec----CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCC
Confidence 11112221 224455555556677788899999997643210 01111111 1112333333333
Q ss_pred e----EEEEecCCCEEEEeCCC
Q 016725 274 T----TFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 274 ~----~~~lt~~g~vy~wG~n~ 291 (384)
. .++-..+|.|..|-...
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSC
T ss_pred CCCCeEEEecCCCcEEEEecCC
Confidence 2 66678889999997643
No 70
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=56.02 E-value=99 Score=26.66 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=11.9
Q ss_pred CcceEEEeCCCCEEEEeC
Q 016725 220 AWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~ 237 (384)
..|+++. -++++|++|-
T Consensus 141 ~~~~~~~-~~~~iyv~GG 157 (306)
T 3ii7_A 141 CSHGMVE-ANGLIYVCGG 157 (306)
T ss_dssp BSCEEEE-ETTEEEEECC
T ss_pred ceeEEEE-ECCEEEEECC
Confidence 4455555 4779999984
No 71
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=54.50 E-value=98 Score=26.13 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=12.1
Q ss_pred eEEEEecCCCEEEEeCC
Q 016725 274 TTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 274 ~~~~lt~~g~vy~wG~n 290 (384)
..++++.+|++|+....
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 46777788888877643
No 72
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=53.58 E-value=1.8e+02 Score=29.04 Aligned_cols=204 Identities=12% Similarity=-0.056 Sum_probs=101.9
Q ss_pred CcEEEEEeC----CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC----CeEEEEEc
Q 016725 47 IRIIQAAAG----AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSR 118 (384)
Q Consensus 47 ~~i~~i~~G----~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~----~~~~~lt~ 118 (384)
..|..++.. ....+.-..||.|+.|-.... . ..+..........|..++... ...+.-..
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----------~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 121 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------R--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----------E--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----------c--ccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence 467777764 445666778899999965331 1 001111111233577777653 45666788
Q ss_pred CCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-------------CceeEEEeeCCCCEEEEEecCC
Q 016725 119 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGL 185 (384)
Q Consensus 119 ~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-------------~~~~~l~~~~~G~~vy~~G~n~ 185 (384)
||.|+.|-....... ....+. .....|..++... +...+++...+| .|+.|-...
T Consensus 122 dg~I~vwdl~~~~~~---------~~~~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~ 189 (753)
T 3jro_A 122 DGKVSVVEFKENGTT---------SPIIID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNS 189 (753)
T ss_dssp TSEEEEEECCSSSCC---------CCEEEE--CCSSCEEEEEECCCC---------CGGGCCEEEEETTS-CEEEEEEET
T ss_pred CCcEEEEEeecCCCc---------ceeEee--cCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccC
Confidence 899998865433110 011111 1233466666544 123333333478 899995432
Q ss_pred CCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc-----ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec
Q 016725 186 GGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-----HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL 260 (384)
Q Consensus 186 ~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~ 260 (384)
.. .....+..+......|..++.... ..+.-..||.|++|-.......-. ........
T Consensus 190 ~~----------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~------~~~~~~~~- 252 (753)
T 3jro_A 190 DA----------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK------KTLLKEEK- 252 (753)
T ss_dssp TT----------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB------CCBSSSSC-
T ss_pred Cc----------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce------eEEeccCC-
Confidence 11 111222222223345666665533 455556899999997544210000 00000000
Q ss_pred CCCcE--EEEEcCCceEEEEecCCCEEEEeCCC
Q 016725 261 NDVKA--IHVATGDYTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 261 ~~~~i--~~i~~g~~~~~~lt~~g~vy~wG~n~ 291 (384)
....| ..+.......+.-..||.|+.|-...
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 01122 23333444555567899999997653
No 73
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=53.33 E-value=1.9e+02 Score=29.01 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=100.7
Q ss_pred cEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC----CCeEEEEEcCCC
Q 016725 48 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREGR 121 (384)
Q Consensus 48 ~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G----~~~~~~lt~~G~ 121 (384)
.|..++.. ....+.-..||.|..|-.... . ......+.. ....|..++.. ....+.-..||.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------~-~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------T-HKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT----------E-EEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC----------C-CccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 46555543 234444557898988854310 0 011111121 13358788764 345666788999
Q ss_pred EEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCC--ceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCC
Q 016725 122 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 199 (384)
Q Consensus 122 vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 199 (384)
|+.|-..... ..+.... ......|..++.... ...+++-..+| .|+.|-...... ..
T Consensus 79 I~vwd~~~~~----------~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~---------~~ 137 (753)
T 3jro_A 79 VLIWKEENGR----------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGT---------TS 137 (753)
T ss_dssp EEEEEEETTE----------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCSSSC---------CC
T ss_pred EEEEECCCCc----------ccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCC-cEEEEEeecCCC---------cc
Confidence 9999654311 0011111 123445777777654 33444444488 999996543211 11
Q ss_pred CeEEeecccCCCCcEEEEcCC---------------cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeec--CC
Q 016725 200 PRLIEQFQLLNLQPVVVAAGA---------------WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--ND 262 (384)
Q Consensus 200 p~~i~~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~ 262 (384)
...+.. ....|..++... ...+.-..||.|+.|-..... . ....+..+ ..
T Consensus 138 ~~~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~--~~~~~~~~~~h~ 204 (753)
T 3jro_A 138 PIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------Q--TYVLESTLEGHS 204 (753)
T ss_dssp CEEEEC---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------T--EEEEEEEECCCS
T ss_pred eeEeec---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------c--cceeeeeecCCC
Confidence 122221 223444544432 345556789999999643310 0 01111111 23
Q ss_pred CcEEEEEcCC-----ceEEEEecCCCEEEEeCC
Q 016725 263 VKAIHVATGD-----YTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 263 ~~i~~i~~g~-----~~~~~lt~~g~vy~wG~n 290 (384)
..|..++... ...+.-..+|.|+.|-..
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 3566666553 345556778999999754
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=49.00 E-value=1.6e+02 Score=26.89 Aligned_cols=207 Identities=9% Similarity=-0.060 Sum_probs=0.0
Q ss_pred EEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEe---CCCeEEEEEcCCCEEEEE
Q 016725 50 IQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRVYTFS 126 (384)
Q Consensus 50 ~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~---G~~~~~~lt~~G~vy~~G 126 (384)
+.++......+.-..||.|+.|-... .....+..... .|..|+. +....+.-..||.|..|-
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~--------------~~~~~~~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDG--------------KELWNLRMHKK-KVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSS--------------CBCCCSBCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCc--------------ceeEEEecccc-eEEeeeecCCCceEEEEecCcceeeEEe
Q ss_pred cCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeec
Q 016725 127 WGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF 206 (384)
Q Consensus 127 ~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~ 206 (384)
..... ..............|..++...+...+++...|| .|+.|-.........-..........+..+
T Consensus 280 ~~~~~----------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 280 LRQVR----------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-EIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp TTTCC----------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-CEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred ccccc----------ccceEEEeeeccccccceeECCCCCeeEEEcCCC-EEEEEECCCCccceEEecccccccccceeE
Q ss_pred ccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEE--EcCCceEEEEecCCCE
Q 016725 207 QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHV--ATGDYTTFVVSEDGDV 284 (384)
Q Consensus 207 ~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~lt~~g~v 284 (384)
+...-..+....++...++.+++|.....+.+-.-+......-..+.......|..+ ..-....++-..++.|
T Consensus 349 -----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i 423 (435)
T 4e54_B 349 -----KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHI 423 (435)
T ss_dssp -----BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEE
T ss_pred -----EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcE
Q ss_pred EEE
Q 016725 285 YSF 287 (384)
Q Consensus 285 y~w 287 (384)
+.|
T Consensus 424 ~iW 426 (435)
T 4e54_B 424 LIW 426 (435)
T ss_dssp EEC
T ss_pred EEE
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=48.52 E-value=1.3e+02 Score=25.90 Aligned_cols=180 Identities=13% Similarity=0.002 Sum_probs=85.9
Q ss_pred CCcccccCCCCCCcceeecccCCCcEEEEE--------eCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEe
Q 016725 24 NGKRNLLGREVNGTPLYCRSLQGIRIIQAA--------AGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV 95 (384)
Q Consensus 24 ~~~~g~~g~~~~~~P~~~~~~~~~~i~~i~--------~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i 95 (384)
+|.+..+.......+..........|..+. ......+.-..||.|..|-...... ....+
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------------~~~~~ 156 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------------PVANM 156 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS------------CSEEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC------------cceec
Confidence 444444444433323222222334576663 2344566667889999996543210 01111
Q ss_pred cCC---CCCcEEEEE------eCCCeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC---
Q 016725 96 ESL---KNIFVVQAA------IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY--- 163 (384)
Q Consensus 96 ~~~---~~~~i~~I~------~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~--- 163 (384)
... ....+..++ ......+.-..+|.|+.|-..... ..... .....|..++...
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~--~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA------------LRWET--NIKNGVCSLEFDRKDI 222 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE------------EEEEE--ECSSCEEEEEESCSSS
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc------------eeeec--CCCCceEEEEcCCCCC
Confidence 111 122466665 233455556778899988644321 01111 1233577777764
Q ss_pred CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc---ceEEEeCCCCEEEEeCCC
Q 016725 164 CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 164 ~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~n~ 239 (384)
....+++-..+| .|+.|-...... . .......+......|..++.... ..+.-..+|.|++|-...
T Consensus 223 ~~~~l~~~~~dg-~i~i~d~~~~~~--------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 223 SMNKLVATSLEG-KFHVFDMRTQHP--------T-KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp SCCEEEEEESTT-EEEEEEEEEEET--------T-TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCCEEEEECCCC-eEEEEeCcCCCc--------c-cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 333333333478 999996532110 0 00000011113335555555443 344556889999997543
No 76
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=47.78 E-value=1.4e+02 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=12.4
Q ss_pred CcceEEEeCCCCEEEEeC
Q 016725 220 AWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~ 237 (384)
..|+++. .+++||++|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3466665 6789999984
No 77
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=47.07 E-value=1.4e+02 Score=25.69 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=12.3
Q ss_pred CcceEEEeCCCCEEEEeCC
Q 016725 220 AWHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~n 238 (384)
..|+++.. ++++|++|-.
T Consensus 93 ~~~~~~~~-~~~iyv~GG~ 110 (306)
T 3ii7_A 93 DSLAACAA-EGKIYTSGGS 110 (306)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEECCC
Confidence 44665554 7899999853
No 78
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=47.02 E-value=1.5e+02 Score=26.24 Aligned_cols=203 Identities=8% Similarity=0.009 Sum_probs=95.5
Q ss_pred CcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC---CCeEEEEEcCCC
Q 016725 47 IRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGR 121 (384)
Q Consensus 47 ~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G---~~~~~~lt~~G~ 121 (384)
..|..++... ...+.-..||.|..|-...... + .. ....+.. ....|..++.. ....+.-..||.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~---~~---~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---A---IN---SMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---C---CC---EEEECCC-SSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc---c---cc---chhhccC-CccceEEEEEcCCCCCEEEEEcCCCe
Confidence 4677776543 3444456789999996543110 0 00 0011111 12245566553 344555667888
Q ss_pred EEEEEcCCCCcccCCCCCCcccccccc-cccCCCCeEEEEEeCC-ceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCC
Q 016725 122 VYTFSWGNDARLGHHTEPNDVEPHPLL-GTLENIPVVQIAAGYC-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 199 (384)
Q Consensus 122 vy~~G~n~~gqlg~~~~~~~~~~~~i~-~~~~~~~i~~i~~g~~-~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 199 (384)
|+.|-........ ....+..+. .......|..++.... ..++++...+| .|+.|-...
T Consensus 138 v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~-------------- 197 (416)
T 2pm9_A 138 IFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN-FASIWDLKA-------------- 197 (416)
T ss_dssp EEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS-CEEEEETTT--------------
T ss_pred EEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC-CEEEEECCC--------------
Confidence 8888544322000 000111110 0012335667776654 34444433477 899995432
Q ss_pred CeEEeecccC------CCCcEEEEcCCc---ceEEEeCCC---CEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEE
Q 016725 200 PRLIEQFQLL------NLQPVVVAAGAW---HAAVVGQDG---RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIH 267 (384)
Q Consensus 200 p~~i~~~~~~------~~~i~~i~~g~~---~~~~lt~~g---~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~ 267 (384)
...+..+... ...+..++.... ..+.-..++ .|+.|-.....+. ...+.......|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQKGILS 267 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCSSCEEE
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCccCceeE
Confidence 1122221111 334555555433 233445566 7888865432110 00111011224555
Q ss_pred EEc---CCceEEEEecCCCEEEEeC
Q 016725 268 VAT---GDYTTFVVSEDGDVYSFGC 289 (384)
Q Consensus 268 i~~---g~~~~~~lt~~g~vy~wG~ 289 (384)
+.. .....+.-..+|.|+.|-.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 553 3455666677899999964
No 79
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=46.05 E-value=1.5e+02 Score=25.79 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=73.3
Q ss_pred cEEEEEeCCC--eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEE
Q 016725 102 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 179 (384)
Q Consensus 102 ~i~~I~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 179 (384)
.|..++.... ..+.-..||.|+.|-.... + ....+. .....|..++......++++-..+| .|+
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~----------~~~~~~--~h~~~v~~l~~spd~~~l~s~s~dg-~i~ 231 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATG-K----------LLHTLE--GHAMPIRSLTFSPDSQLLVTASDDG-YIK 231 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT-E----------EEEEEC--CCSSCCCEEEECTTSCEEEEECTTS-CEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-c----------EEEEEc--ccCCceeEEEEcCCCCEEEEEcCCC-eEE
Confidence 3555554333 3444466778887743321 1 011111 1233466677666555555555577 899
Q ss_pred EEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEe
Q 016725 180 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV 257 (384)
Q Consensus 180 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i 257 (384)
.|-.... ..+..+......|..++-. ..+.+.-..||.|.+|-.... +.+
T Consensus 232 iwd~~~~--------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--------------~~~ 283 (321)
T 3ow8_A 232 IYDVQHA--------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--------------TCV 283 (321)
T ss_dssp EEETTTC--------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEE
T ss_pred EEECCCc--------------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------EEE
Confidence 9954321 1122222223345555543 334555568899999965431 122
Q ss_pred eec--CCCcEEEEEcC--CceEEEEecCCCEEEEe
Q 016725 258 QAL--NDVKAIHVATG--DYTTFVVSEDGDVYSFG 288 (384)
Q Consensus 258 ~~~--~~~~i~~i~~g--~~~~~~lt~~g~vy~wG 288 (384)
..+ -...|..++-. ....+.-..||.|..|-
T Consensus 284 ~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 222 12245555433 23445556788888885
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=43.31 E-value=1.6e+02 Score=25.49 Aligned_cols=208 Identities=11% Similarity=-0.063 Sum_probs=98.2
Q ss_pred cEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC--CeEEEEEcCCCEE
Q 016725 48 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 123 (384)
Q Consensus 48 ~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~--~~~~~lt~~G~vy 123 (384)
.|..++.. ....+....||.|+.|-.... . ..+..........|..++... ...+.-..+|.|+
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR----------T--WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 121 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETT----------E--EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCC----------e--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence 56555443 344555567788888754221 1 111111111233477776543 3455567788888
Q ss_pred EEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCC-----CCCCC
Q 016725 124 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS-----RTDEK 198 (384)
Q Consensus 124 ~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~-----~~~~~ 198 (384)
.|-...... ......+.. .....|..++.......+++-..+| .|+.|-..... +.... .....
T Consensus 122 i~d~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~-~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 122 ICYFEQEND--------WWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKE-VEERPAPTPWGSKMP 190 (372)
T ss_dssp EEEEETTTT--------EEEEEEECT-TCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTT-TSCCCCCBTTBSCCC
T ss_pred EEEecCCCc--------ceeeeeeec-ccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEccccc-ccccccccccccccc
Confidence 886543211 001111111 1234577777765544455444488 99999643211 00000 00011
Q ss_pred CCeEEeecccCCCCcEEEEcCCc--ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC-CceE
Q 016725 199 HPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTT 275 (384)
Q Consensus 199 ~p~~i~~~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~ 275 (384)
....+..+......|..++.... +.++...+|.|+.|-...... ...+. .....|..+... ....
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSL 258 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEE
T ss_pred hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCE
Confidence 22233333223334555555433 445556788888886543110 11111 112234444432 3345
Q ss_pred EEEecCCCEEEEeCC
Q 016725 276 FVVSEDGDVYSFGCG 290 (384)
Q Consensus 276 ~~lt~~g~vy~wG~n 290 (384)
++...+|.|+.|-..
T Consensus 259 l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 259 VAAGHDCFPVLFTYD 273 (372)
T ss_dssp EEEETTSSCEEEEEE
T ss_pred EEEEeCCeEEEEEcc
Confidence 555678888888754
No 81
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=41.72 E-value=1.8e+02 Score=25.57 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=13.3
Q ss_pred CCceEEEEecCCCEEEEeC
Q 016725 271 GDYTTFVVSEDGDVYSFGC 289 (384)
Q Consensus 271 g~~~~~~lt~~g~vy~wG~ 289 (384)
-..|+++. .+++||++|-
T Consensus 109 r~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 109 MAGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp CSSEEEEE-ETTEEEEEEC
T ss_pred cccceEEE-ECCEEEEEeC
Confidence 34566666 7889999994
No 82
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=40.66 E-value=1.8e+02 Score=25.22 Aligned_cols=152 Identities=10% Similarity=0.069 Sum_probs=75.8
Q ss_pred CCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc--ceEEEeCCC
Q 016725 153 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDG 230 (384)
Q Consensus 153 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--~~~~lt~~g 230 (384)
...|..++....-..+++-..+| .|+.|-... ...+..+......|..++.... ..+.-..||
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDG-IINIFDIAT--------------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEcCCC-eEEEEECCC--------------CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 33466777665555555544577 888885321 1222222222334444444333 334445788
Q ss_pred CEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCC
Q 016725 231 RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRH 308 (384)
Q Consensus 231 ~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~ 308 (384)
.|.+|-...... ...+.. -...|..++-. ..+.+.-..|+.|..|-...
T Consensus 229 ~i~iwd~~~~~~-----------~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~----------------- 279 (321)
T 3ow8_A 229 YIKIYDVQHANL-----------AGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT----------------- 279 (321)
T ss_dssp CEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----------------
T ss_pred eEEEEECCCcce-----------eEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----------------
Confidence 888886543111 111111 12235555433 34455567788899886431
Q ss_pred cccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeC
Q 016725 309 ANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 356 (384)
Q Consensus 309 ~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~ 356 (384)
...+..+......|..++..+ .....+.-..||+|..|-.
T Consensus 280 -----~~~~~~~~~h~~~v~~v~~s~---~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 280 -----RTCVHTFFDHQDQVWGVKYNG---NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -----TEEEEEECCCSSCEEEEEECT---TSSEEEEEETTCCEEEEEC
T ss_pred -----CEEEEEEcCCCCcEEEEEECC---CCCEEEEEeCCCeEEEEeC
Confidence 122223333345566665511 2334444567888888753
No 83
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=39.72 E-value=1.8e+02 Score=25.00 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=12.0
Q ss_pred CcceEEEeCCCCEEEEeC
Q 016725 220 AWHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~ 237 (384)
..|++++. ++++|++|-
T Consensus 160 ~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 160 IGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceEEEEE-CCEEEEEeC
Confidence 34565554 789999985
No 84
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=39.13 E-value=1.9e+02 Score=25.13 Aligned_cols=99 Identities=7% Similarity=-0.097 Sum_probs=52.5
Q ss_pred eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccC
Q 016725 112 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGH 191 (384)
Q Consensus 112 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~ 191 (384)
..+.-..||.|..|-...... ...+. -....|..++......++++-..+| .|..|=....
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~-----------~~~~~--~h~~~v~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~----- 216 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQ-----------TTTFT--GHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREG----- 216 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEE-----------EEEEC--CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTC-----
T ss_pred cEEEEECCCcEEEEECCCCcE-----------EEEEc--CCCCceEEEEECCCCCEEEEEeCCC-cEEEEECCCC-----
Confidence 344556678888875432111 01111 1233577777766665666655588 9999954321
Q ss_pred CCCCCCCCCeEEeecccCCCCcEEEEcCC--cceEEEeCCCCEEEEeCC
Q 016725 192 GSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 192 ~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n 238 (384)
..+..+......|..++... ...+.-..||.|..|-..
T Consensus 217 ---------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 217 ---------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp ---------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ---------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 11222222233455555443 334445678889999654
No 85
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.24 E-value=2.2e+02 Score=25.39 Aligned_cols=231 Identities=12% Similarity=0.030 Sum_probs=115.2
Q ss_pred CCCcEEE--EEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC-----CeEEEEE
Q 016725 45 QGIRIIQ--AAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLS 117 (384)
Q Consensus 45 ~~~~i~~--i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~-----~~~~~lt 117 (384)
++..++. ++....+.+++|+.|++|..-....-..+... .-.+....+....+++|+.+..-. ...+++|
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a---~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T 113 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD---LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVT 113 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS---CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC---CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEe
Confidence 3344544 46677889999999999999876644433321 111111222223466788765433 3578889
Q ss_pred cCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE--eCCceeEEEeeCCCCEEEEEecCCCCcccCCCCC
Q 016725 118 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 195 (384)
Q Consensus 118 ~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 195 (384)
++|.+.-.-...+-.... ..-.....+ -.+..++.+.. +....++++. +| .++-+-.++...+|...
T Consensus 114 ~~G~iKrt~l~e~~~~~r---~~G~~ai~l---~e~d~lv~~~~~~~~~~i~l~T~--~G-~~irf~~~ev~~~gR~a-- 182 (323)
T 1wp5_A 114 RNGMVKKTELKHYKAQRY---SKPLTGINL---KNDDQVVDVHLTDGMNELFLVTH--NG-YALWFDESEVSIVGVRA-- 182 (323)
T ss_dssp TTSEEEEEEGGGGCCSCC---SSCEECSCC---CTTCCEEEEEEECSCSEEEEEET--TS-EEEEEEGGGSCBCCSSC--
T ss_pred CCCeEEEeEHHHhhhccc---cCceEEEEe---CCCCEEEEEEEeCCCCEEEEEeC--CC-cEEEEEHHHCcccCCCC--
Confidence 999777554433211100 000111111 12234544333 5567777777 88 99998877655544421
Q ss_pred CCCCCeEEeecccCCCCcEEEEcC--Cc-ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEE--EEc
Q 016725 196 DEKHPRLIEQFQLLNLQPVVVAAG--AW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIH--VAT 270 (384)
Q Consensus 196 ~~~~p~~i~~~~~~~~~i~~i~~g--~~-~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~--i~~ 270 (384)
....+-.+. .+..++.+..- .. ..+.++++|...-.-...+..-+.+.. -...++.++. .+..++. +..
T Consensus 183 ---~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~~v~ 256 (323)
T 1wp5_A 183 ---AGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFVVAQ 256 (323)
T ss_dssp ---CCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEEEEC
T ss_pred ---cCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEEEeC
Confidence 112221111 23345544321 12 466667776543333333322222211 1111111110 1113332 234
Q ss_pred CCceEEEEecCCCEEEEeCCCCCCC
Q 016725 271 GDYTTFVVSEDGDVYSFGCGESASL 295 (384)
Q Consensus 271 g~~~~~~lt~~g~vy~wG~n~~g~l 295 (384)
+.+..++++++|++...--+.....
T Consensus 257 ~~~~i~~it~~g~~ir~~~~~i~~~ 281 (323)
T 1wp5_A 257 DSDTIYLQTEKSFIETIKVGDIRFS 281 (323)
T ss_dssp TTCEEEEEETTSCEEEEEGGGSCBC
T ss_pred CCCeEEEEeCCCeEEEEEhhhcCcc
Confidence 5677889999999988765544333
No 86
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=38.16 E-value=1.4e+02 Score=23.18 Aligned_cols=110 Identities=14% Similarity=0.021 Sum_probs=61.1
Q ss_pred cCCCCeEEEEEeC-CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcC-CcceEEEeC
Q 016725 151 LENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQ 228 (384)
Q Consensus 151 ~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g-~~~~~~lt~ 228 (384)
.+..+..++.|-. .+-+-+.. || .|-+-... .....-..+.. ....++.|.|- ..+.+++..
T Consensus 27 ~~~~~~~~LYcr~~g~~LqI~~--dG-~V~Gt~~~----------~~~~s~lei~s---v~~G~V~L~g~~sg~yL~mn~ 90 (142)
T 3p6j_A 27 PEGNGEVLLKSTETGQYLRINP--DG-TVDGTRDR----------SDTHIQFQISP---EGNGEVLLKSTETGQYLRINP 90 (142)
T ss_dssp ECSTTCEEEEETTTCCEEEECT--TS-BEEEECCT----------TCGGGCEEEEE---EETTEEEEEETTTTEEEEECT
T ss_pred cccCcEEEEEEeCCCEEEEECC--CC-CEeeecCC----------CCCceEEEEEE---ccCCEEEEEEecCCEEEeECC
Confidence 3455688888865 44444544 88 88765331 11122223332 23357888876 467899999
Q ss_pred CCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEE
Q 016725 229 DGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 286 (384)
Q Consensus 229 ~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~ 286 (384)
+|+||.--.. .......++.......+..=..-....+|+.++|++|.
T Consensus 91 ~G~l~Gs~~~----------t~ecsflEi~~en~y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 91 DGTVDGTRDR----------SDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp TSBEEEECCT----------TCGGGCEEEEECSTTCEEEEETTTCCEEEECTTSBEEE
T ss_pred CCCEeecccC----------CCCceEEEEEeecCcEEEEEEecCCEEEEECCCcCCcc
Confidence 9999964221 11223334333322222211223345999999999995
No 87
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=38.12 E-value=2e+02 Score=25.02 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=60.1
Q ss_pred CcEEEEEe--------CCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEE
Q 016725 47 IRIIQAAA--------GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVL 116 (384)
Q Consensus 47 ~~i~~i~~--------G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~l 116 (384)
..|..|+. .....+.-..|+.|..|-.....+.+. ...|.....-....|..++.... ..+.-
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------FGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------SEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------cccccchhccCCCceEEEEECCCCCEEEEE
Confidence 36777765 222344445689999997544222110 01111111112334777766544 33444
Q ss_pred EcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEec
Q 016725 117 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 183 (384)
Q Consensus 117 t~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 183 (384)
..||.|..|-...... ...+. -....|..++.......+++-..+| .|+.|-.
T Consensus 95 s~D~~v~lwd~~~~~~-----------~~~~~--~h~~~v~~v~~sp~~~~l~s~~~d~-~i~~wd~ 147 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTT-----------YKRFV--GHQSEVYSVAFSPDNRQILSAGAER-EIKLWNI 147 (343)
T ss_dssp ETTSEEEEEETTSSCE-----------EEEEE--CCCSCEEEEEECSSTTEEEEEETTS-CEEEEES
T ss_pred cCCCcEEEEECCCCcE-----------EEEEc--CCCCcEEEEEECCCCCEEEEEcCCC-EEEEEec
Confidence 5688888885433211 11111 1234577777766555555554588 9999964
No 88
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=37.31 E-value=2.1e+02 Score=25.05 Aligned_cols=223 Identities=10% Similarity=0.017 Sum_probs=105.4
Q ss_pred CCCcEEEEEeCC---CeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeC-CceeEEEeeCC
Q 016725 99 KNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPS 174 (384)
Q Consensus 99 ~~~~i~~I~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~ 174 (384)
....|..++... ...+.-..||.|..|-.............................|..++... ...++++...+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 345688888754 34555677999999965543211100000000000000001344687887754 33334443348
Q ss_pred CCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc-----ceEEEeCCCCEEEEeCCCCCccCCCCCC
Q 016725 175 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-----HAAVVGQDGRVCTWGWGRYGCLGHGNEE 249 (384)
Q Consensus 175 G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----~~~~lt~~g~vy~wG~n~~gqlg~~~~~ 249 (384)
| .|+.|-... ...+..+. ....+..+..... ..++-..+|.|+.|-......
T Consensus 122 ~-~i~iwd~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------- 178 (408)
T 4a11_B 122 K-TLKVWDTNT--------------LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------- 178 (408)
T ss_dssp S-EEEEEETTT--------------TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-------
T ss_pred C-eEEEeeCCC--------------Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-------
Confidence 8 999996432 11122111 2223444443322 345557889999997543211
Q ss_pred CccCcEEeeecCCCcEEEEEcCC--ce-EEEEecCCCEEEEeCCCCCC-CCCCCCCCCCCCCCcccccCeeeecccccCc
Q 016725 250 CESVPKVVQALNDVKAIHVATGD--YT-TFVVSEDGDVYSFGCGESAS-LGHNAIADGQGNRHANVLTPQLVTSLKQVNE 325 (384)
Q Consensus 250 ~~~~p~~i~~~~~~~i~~i~~g~--~~-~~~lt~~g~vy~wG~n~~g~-lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~ 325 (384)
...+.. ....|..+.... .+ .+.-..+|.|+.|-...... +-.-. ...................
T Consensus 179 ----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 179 ----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD-------QHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp ----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC-------TTTTCSCCCTTTSSCSCSS
T ss_pred ----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc-------ccccccceeeccccccccC
Confidence 112221 122455555433 32 45567889999997643221 10000 0000000001111112344
Q ss_pred cEEEEeeeccccccceEEEEeCCCCEEEEeCCCC
Q 016725 326 RVVQISLTNSIYWNAHTFALTESGKLYAFGAGDK 359 (384)
Q Consensus 326 ~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~ 359 (384)
.|..++..+ ...+.+....+|.+..|-....
T Consensus 247 ~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 247 KVNGLCFTS---DGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp CEEEEEECT---TSSEEEEEETTSCEEEEETTTC
T ss_pred ceeEEEEcC---CCCEEEEecCCCeEEEEECCCC
Confidence 566665521 3345666678999999987553
No 89
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=37.12 E-value=1.8e+02 Score=24.29 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=12.1
Q ss_pred ceEEEeCCCCEEEEeCC
Q 016725 222 HAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 222 ~~~~lt~~g~vy~wG~n 238 (384)
..++++.+|++|+....
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45777788888876643
No 90
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=37.03 E-value=2.5e+02 Score=25.76 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=57.2
Q ss_pred eEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEE
Q 016725 156 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW 235 (384)
Q Consensus 156 i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 235 (384)
|.++++ ....+++.. +| .|+.|=.....+ ...+.. ....+.++.+-....++++.+|.|++|
T Consensus 90 V~~l~f-d~~~L~v~~--~~-~l~v~dv~sl~~-----------~~~~~~---~~~~v~~i~~~~p~~av~~~dG~L~v~ 151 (388)
T 1xip_A 90 VIFVCF-HGDQVLVST--RN-ALYSLDLEELSE-----------FRTVTS---FEKPVFQLKNVNNTLVILNSVNDLSAL 151 (388)
T ss_dssp EEEEEE-ETTEEEEEE--SS-EEEEEESSSTTC-----------EEEEEE---CSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred eeEEEE-CCCEEEEEc--CC-cEEEEEchhhhc-----------cCccce---eecceeeEEecCCCEEEEECCCCEEEE
Confidence 889999 666777776 88 999996543322 112222 223455666665567778999999999
Q ss_pred eCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEE
Q 016725 236 GWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 287 (384)
Q Consensus 236 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 287 (384)
=..... + ..+. ..|..|+-...-.++...||++..|
T Consensus 152 dl~~~~-~-----------~~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 152 DLRTKS-T-----------KQLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTTCC-E-----------EEEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EccCCc-c-----------cccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 654311 1 0111 1355555444444555566666655
No 91
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=36.90 E-value=1.5e+02 Score=25.48 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=11.1
Q ss_pred cceEEEeCCCCEEEEeC
Q 016725 221 WHAAVVGQDGRVCTWGW 237 (384)
Q Consensus 221 ~~~~~lt~~g~vy~wG~ 237 (384)
.|+++.. ++++|+.|-
T Consensus 244 ~~~~~~~-~~~i~v~GG 259 (302)
T 2xn4_A 244 NAGVCAV-NGLLYVVGG 259 (302)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cCeEEEE-CCEEEEECC
Confidence 4555543 779999985
No 92
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=34.68 E-value=2.1e+02 Score=24.30 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=12.5
Q ss_pred CcceEEEeCCCCEEEEeCC
Q 016725 220 AWHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 220 ~~~~~~lt~~g~vy~wG~n 238 (384)
..|+++.. ++++|++|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 44666554 6899999853
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=34.54 E-value=2.2e+02 Score=24.39 Aligned_cols=200 Identities=10% Similarity=-0.036 Sum_probs=95.1
Q ss_pred CcEEEEEeCC-----CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEe--------CCCeE
Q 016725 47 IRIIQAAAGA-----GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--------GNFFT 113 (384)
Q Consensus 47 ~~i~~i~~G~-----~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~--------G~~~~ 113 (384)
..|..++... ...+.-..||.|..|-.....+ ....+.. ....|..+.. ...+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l 132 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEI 132 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------------CSEEECC-CSSCEEEEEEESGGGCC-CCCEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------------cEEEEEe-cccceEEEeeccccccCCCccEE
Confidence 4677777654 4455556789999996654220 0011111 1224555532 23355
Q ss_pred EEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEE----eCCceeEEEeeCCCCEEEEEecCCCCcc
Q 016725 114 AVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA----GYCYLLALACQPSGMAVYSVGCGLGGKL 189 (384)
Q Consensus 114 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~----g~~~~~~l~~~~~G~~vy~~G~n~~gql 189 (384)
+.-..||.|+.|-...... .......... .....+..++. ......+++...+| .|+.|-.....
T Consensus 133 ~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~-- 201 (357)
T 3i2n_A 133 VTGSRDGTVKVWDPRQKDD-------PVANMEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDNG-DIKLFDLRNMA-- 201 (357)
T ss_dssp EEEETTSCEEEECTTSCSS-------CSEEECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETTS-EEEEEETTTTE--
T ss_pred EEEeCCCeEEEEeCCCCCC-------cceeccccCC-CCCCceEEEEEEeccCCCCCEEEEEccCC-eEEEEECccCc--
Confidence 5567788999885443210 0011111010 11224666652 12222233323378 99999643211
Q ss_pred cCCCCCCCCCCeEEeecccCCCCcEEEEcCC-----cceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCc
Q 016725 190 GHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-----WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK 264 (384)
Q Consensus 190 g~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 264 (384)
+..... ....+..++... ...++-..+|.++.|-......+ .......+. .....
T Consensus 202 ----------~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~-~~~~~ 261 (357)
T 3i2n_A 202 ----------LRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEK-AHKST 261 (357)
T ss_dssp ----------EEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEE-CCSSC
T ss_pred ----------eeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccC-CCcCC
Confidence 111111 233455555542 44555578899999865331100 000000111 12334
Q ss_pred EEEEEcCCc---eEEEEecCCCEEEEeCC
Q 016725 265 AIHVATGDY---TTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 265 i~~i~~g~~---~~~~lt~~g~vy~wG~n 290 (384)
|..+....+ ..+.-..+|.|+.|-..
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 666655443 34445778999999754
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=34.33 E-value=2.1e+02 Score=24.06 Aligned_cols=143 Identities=8% Similarity=-0.056 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCccc
Q 016725 111 FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLG 190 (384)
Q Consensus 111 ~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg 190 (384)
...++.-.|+.|+.|=... |++ ...+...-....|..++.......+++-..|| .|..|-...
T Consensus 36 ~~~lAvg~D~tV~iWd~~t-g~~----------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-~v~iw~~~~----- 98 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASS-GDI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-EVQLWDVQQ----- 98 (318)
T ss_dssp TSEEEEEETTEEEEEETTT-CCE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTS-EEEEEETTT-----
T ss_pred CCEEEEEeCCEEEEEECCC-CCE----------EEEEEecCCCCeEEEEEECCCCCEEEEEECCC-cEEEeecCC-----
Confidence 3456666688899984332 110 01111112233577888777666666655688 999995432
Q ss_pred CCCCCCCCCCeEEeecccCCCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeee-cCCCcEEEEE
Q 016725 191 HGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQA-LNDVKAIHVA 269 (384)
Q Consensus 191 ~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~~~i~~i~ 269 (384)
...+..+......+..++......+.-..++.+..|-....... ...+.. ..........
T Consensus 99 ---------~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 99 ---------QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----------VATLSGHSQEVCGLRWA 159 (318)
T ss_dssp ---------TEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEECCSSCEEEEEEC
T ss_pred ---------ceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee----------EEEEcCccCceEEEEEc
Confidence 12222222233344455444444444556666666654321100 011111 1111222223
Q ss_pred cCCceEEEEecCCCEEEEeC
Q 016725 270 TGDYTTFVVSEDGDVYSFGC 289 (384)
Q Consensus 270 ~g~~~~~~lt~~g~vy~wG~ 289 (384)
......+.-..||.|..|-.
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp TTSSEEEEEETTSCEEEEES
T ss_pred CCCCEEEEEecCcceeEEEC
Confidence 33445555677888888864
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=31.12 E-value=3e+02 Score=24.98 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=38.1
Q ss_pred cEEEEEeCCC-----eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCC
Q 016725 102 FVVQAAIGNF-----FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGM 176 (384)
Q Consensus 102 ~i~~I~~G~~-----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~ 176 (384)
.|..|+.... ..+.-..|+.|+.|-......+ ...+. -....|..++.. .-..+++...+|
T Consensus 197 ~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----------~~~~~--~h~~~v~~~~~s-d~~~l~s~~~d~- 262 (450)
T 2vdu_B 197 MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----------DKWLF--GHKHFVSSICCG-KDYLLLSAGGDD- 262 (450)
T ss_dssp CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----------EEECC--CCSSCEEEEEEC-STTEEEEEESSS-
T ss_pred ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----------eeeec--CCCCceEEEEEC-CCCEEEEEeCCC-
Confidence 4666655443 4555677889998865432110 00010 122346666665 444444444588
Q ss_pred EEEEEecCC
Q 016725 177 AVYSVGCGL 185 (384)
Q Consensus 177 ~vy~~G~n~ 185 (384)
.|+.|-...
T Consensus 263 ~v~vwd~~~ 271 (450)
T 2vdu_B 263 KIFAWDWKT 271 (450)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 999997543
No 96
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=31.04 E-value=2.5e+02 Score=23.89 Aligned_cols=69 Identities=4% Similarity=-0.125 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcC-CcceEEEeCCCCE
Q 016725 154 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQDGRV 232 (384)
Q Consensus 154 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v 232 (384)
..|..++......++++-..|| .|+.|-... ...+..+. ....+..++.. ..+.++...++.+
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~--------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i 279 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDG-QAMLWDLNE--------------GKHLYTLD-GGDIINALCFSPNRYWLCAATGPSI 279 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-EEEEEETTT--------------TEEEEEEE-CSSCEEEEEECSSSSEEEEEETTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCC-eEEEEEecc--------------Cceeeeec-CCceEEeeecCCCCceeeccCCCEE
Confidence 3577777766555555555588 999995432 22222222 12234444333 3355666788899
Q ss_pred EEEeCC
Q 016725 233 CTWGWG 238 (384)
Q Consensus 233 y~wG~n 238 (384)
++|-..
T Consensus 280 ~iwd~~ 285 (340)
T 4aow_A 280 KIWDLE 285 (340)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999654
No 97
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=28.86 E-value=3e+02 Score=24.13 Aligned_cols=195 Identities=8% Similarity=0.016 Sum_probs=101.4
Q ss_pred CcEEEEEeCC---CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecC-CCCCcEEEEEeCC---CeEEEEEcC
Q 016725 47 IRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVES-LKNIFVVQAAIGN---FFTAVLSRE 119 (384)
Q Consensus 47 ~~i~~i~~G~---~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~-~~~~~i~~I~~G~---~~~~~lt~~ 119 (384)
..|..++... ...+.-..||.|..|-...... . ..+.. -....|..++... ...+.-..|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~-----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--------T-----SFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--------E-----EEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--------c-----eeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 3566666543 3455556788888886543110 0 11111 1234577777644 345556778
Q ss_pred CCEEEEEcCCCCcccCCCCCCccccccccc-ccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCC
Q 016725 120 GRVYTFSWGNDARLGHHTEPNDVEPHPLLG-TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEK 198 (384)
Q Consensus 120 G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~-~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~ 198 (384)
|.|..|-... . ....+.. ......|..++.......+++-..+| .|+.|-.. +
T Consensus 141 ~~i~iwd~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~--~----------- 194 (383)
T 3ei3_B 141 GATTLRDFSG-S-----------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG-RLLLLGLD--G----------- 194 (383)
T ss_dssp TEEEEEETTS-C-----------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS-EEEEEETT--S-----------
T ss_pred CEEEEEECCC-C-----------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC-CEEEEECC--C-----------
Confidence 9999886542 1 0111111 01123477777766555555555588 99999642 1
Q ss_pred CCeEEeecccCCCCcEEEEcCCc---ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcCC---
Q 016725 199 HPRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD--- 272 (384)
Q Consensus 199 ~p~~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~--- 272 (384)
..+..+......|..++.... ..+.-..||.|++|-...... ...+..... ....|..+....
T Consensus 195 --~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~-~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 195 --HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--------KNSYIAEMP-HEKPVNAAYFNPTDS 263 (383)
T ss_dssp --CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--------TTCEEEEEE-CSSCEEEEEECTTTS
T ss_pred --CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--------ccceEEEec-CCCceEEEEEcCCCC
Confidence 122222223345555555444 334445788899986543110 011111111 223466565433
Q ss_pred ceEEEEecCCCEEEEeCCC
Q 016725 273 YTTFVVSEDGDVYSFGCGE 291 (384)
Q Consensus 273 ~~~~~lt~~g~vy~wG~n~ 291 (384)
...++-..+|.|+.|-...
T Consensus 264 ~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEESSSEEEEEETTB
T ss_pred CEEEEEcCCCcEEEEECCC
Confidence 4555567789999997643
No 98
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=28.45 E-value=3.1e+02 Score=24.29 Aligned_cols=264 Identities=10% Similarity=-0.015 Sum_probs=129.6
Q ss_pred CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEE--EEeCCCeEEEEEcCCCEEEEEcCCCCccc
Q 016725 57 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARLG 134 (384)
Q Consensus 57 ~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~--I~~G~~~~~~lt~~G~vy~~G~n~~gqlg 134 (384)
...+.+|.+|.|-.---..+...+.+ -+..-.+..+.. ++....+.+++|+.|++|-+-...--..+
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~-----------~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~ 74 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQ-----------DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIR 74 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTC-----------CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCcc-----------ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCC
Confidence 35677888887765533322111110 011111223333 45677789999999999987665533322
Q ss_pred CCCCCCcccccccccccCCCCeEEEEEeC-----CceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecccC
Q 016725 135 HHTEPNDVEPHPLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLL 209 (384)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~i~~i~~g~-----~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~ 209 (384)
..... ......+.. -.+.+|+.+..-. .+.+++++ +| .+.-.-..+|..... ..-...-.+. .
T Consensus 75 r~a~G-~~i~~~i~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~--~G-~iKrt~l~e~~~~~r------~~G~~ai~l~-e 142 (323)
T 1wp5_A 75 WKDLG-QHIANIIPI-DRDEEIIKAIPINDFELNGYFLFVTR--NG-MVKKTELKHYKAQRY------SKPLTGINLK-N 142 (323)
T ss_dssp TTSCC-EEGGGTSCC-CTTCCEEEEEEESCTTSSCEEEEEET--TS-EEEEEEGGGGCCSCC------SSCEECSCCC-T
T ss_pred CCCCC-cChhhccCC-CCCCEEEEEEEecccCCCceEEEEeC--CC-eEEEeEHHHhhhccc------cCceEEEEeC-C
Confidence 21110 111122222 3466788765543 24566676 88 777765544322110 1111111111 1
Q ss_pred CCCcEE--EEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEe-eecCCCcEEEEEcC--Cc-eEEEEecCCC
Q 016725 210 NLQPVV--VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV-QALNDVKAIHVATG--DY-TTFVVSEDGD 283 (384)
Q Consensus 210 ~~~i~~--i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i-~~~~~~~i~~i~~g--~~-~~~~lt~~g~ 283 (384)
+..++. +..+..+.+++|++|+++-+-.+....+|.... ..+. ..-.+..|+.+..- .. ..+++|++|.
T Consensus 143 ~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~ 217 (323)
T 1wp5_A 143 DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVKGMNLKEGDYIVSGQLITSKDESIVVATQRGA 217 (323)
T ss_dssp TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEECCCCCTTCCEEEEEEECCTTCEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCc
Confidence 223333 334566789999999999887766554544221 1122 22234456655321 22 4666677765
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEE--eeeccccccceEEEEeCCCCEEEEeCCCCCC
Q 016725 284 VYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQI--SLTNSIYWNAHTFALTESGKLYAFGAGDKGQ 361 (384)
Q Consensus 284 vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i--~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g~ 361 (384)
.-..-...+-..+.+. .-...+.. +...+..++.+ .. +.+..++++++|++...-.++.-.
T Consensus 218 gKr~~~~e~~~~~Rg~---------kGv~~~~~---~~~~~~~l~~~~~v~-----~~~~i~~it~~g~~ir~~~~~i~~ 280 (323)
T 1wp5_A 218 VKKMKLTEFEKATRAK---------RGVVILRE---LKANPHRISGFVVAQ-----DSDTIYLQTEKSFIETIKVGDIRF 280 (323)
T ss_dssp EEEEEGGGSCCCCTTS---------CCEECSCC---CSSSCCCEEEEEEEC-----TTCEEEEEETTSCEEEEEGGGSCB
T ss_pred eEEEEHHHccccCCCC---------CCEECeee---cCCCCceEEEEEEeC-----CCCeEEEEeCCCeEEEEEhhhcCc
Confidence 4433332221111111 00011111 11112234432 23 567889999999998887766555
Q ss_pred CCcc
Q 016725 362 LGIE 365 (384)
Q Consensus 362 lg~~ 365 (384)
+|..
T Consensus 281 ~~R~ 284 (323)
T 1wp5_A 281 SDRY 284 (323)
T ss_dssp CCSS
T ss_pred cCcc
Confidence 5543
No 99
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.24 E-value=3.1e+02 Score=24.09 Aligned_cols=263 Identities=12% Similarity=0.084 Sum_probs=126.6
Q ss_pred CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEE--EEeCCCeEEEEEcCCCEEEEEcCCCCccc
Q 016725 57 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARLG 134 (384)
Q Consensus 57 ~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~--I~~G~~~~~~lt~~G~vy~~G~n~~gqlg 134 (384)
...+++|.+|.|-.---..|...-.+ .....-+..-.+..+.. ++....+.+++|+.|++|-+-...--..+
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~------~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRG------GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp EEEEEEETTSEEEEEECC--------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccC------CCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCC
Confidence 34678888888765544443211000 00011111111223333 45677789999999999987665433222
Q ss_pred CCCCCCcccc--cccccccCCCCeEEEEEe-----CCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeecc
Q 016725 135 HHTEPNDVEP--HPLLGTLENIPVVQIAAG-----YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ 207 (384)
Q Consensus 135 ~~~~~~~~~~--~~i~~~~~~~~i~~i~~g-----~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 207 (384)
.. ..-.| ..+.. -.+.+|+.+..- ..+.+++++ +| .+.-.-..++.... ..-...-.+.
T Consensus 78 ~~---a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~--~G-~~Krt~l~e~~~~~-------r~G~~~i~l~ 143 (307)
T 1zi0_A 78 RG---ARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATA--NG-TVKKTVLTEFNRLR-------TAGKVAIKLV 143 (307)
T ss_dssp SS---SCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEET--TS-EEEEEEGGGGTTCC-------TTCEESSCCC
T ss_pred CC---CCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeC--CC-eEEEEEHHHhhccc-------cCCeEEEEEC
Confidence 11 11222 22222 346678877652 234566676 88 77766543332211 0111111111
Q ss_pred cCCCCcEE--EEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCcEEEEEcC--CceEEEEecCCC
Q 016725 208 LLNLQPVV--VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGD 283 (384)
Q Consensus 208 ~~~~~i~~--i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~g~ 283 (384)
.+..++. ...+..+.+++|++|+++-+-......+|....- .+-+..-.+..|+.+..- ....+++|++|.
T Consensus 144 -~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G----v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~ 218 (307)
T 1zi0_A 144 -DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG----VRGIRLGEGDKVVSLIVPRGDGAILTATQNGY 218 (307)
T ss_dssp -TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC----EECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred -CCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC----eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence 1233443 3345567889999999998876655555442211 112222345667776543 234566777776
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCEEEEeCCCCC
Q 016725 284 VYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 360 (384)
Q Consensus 284 vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l~~~G~n~~g 360 (384)
+--.--..+-.-+.+. .-.....+......++.+.... .....+++|++|.+...-.++.-
T Consensus 219 ~Kr~~~~e~~~~~Rg~-------------kG~~~~~~~~~~~~lv~~~~v~---~~~~l~~~t~~g~~ir~~~~~i~ 279 (307)
T 1zi0_A 219 GKRTAVAEYPTKSRAT-------------KGVISIKVTERNGLVVGAVQVD---DCDQIMMITDAGTLVRTRVSEIS 279 (307)
T ss_dssp EEEECGGGSCCCCTTS-------------CCEESSCCCTTTCSEEEEEEEC---TTCEEEEEESSCCEEEEEGGGSC
T ss_pred eEEEEHHHhccCCCCC-------------CCEEeeEecCCCCeEEEEEEeC---CCceEEEEcCCCcEEEEeccccc
Confidence 4443322221111110 0111111211223444443311 45678899999998887665543
No 100
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=27.05 E-value=3.1e+02 Score=23.75 Aligned_cols=70 Identities=11% Similarity=-0.119 Sum_probs=39.0
Q ss_pred cEEEEEeCCC--eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEE
Q 016725 102 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 179 (384)
Q Consensus 102 ~i~~I~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 179 (384)
.|..|+.... ..+.-..||.|..|-......+ ..+........|..++......++++-..+| .|+
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-~i~ 295 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL-----------MTYSHDNIICGITSVSFSKSGRLLLAGYDDF-NCN 295 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEECCTTCCSCEEEEEECTTSSEEEEEETTS-EEE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-----------EEEccCCcccceEEEEECCCCCEEEEECCCC-eEE
Confidence 4666665433 4455567888888865432111 0111101112477777766655566555588 999
Q ss_pred EEec
Q 016725 180 SVGC 183 (384)
Q Consensus 180 ~~G~ 183 (384)
.|-.
T Consensus 296 vwd~ 299 (340)
T 1got_B 296 VWDA 299 (340)
T ss_dssp EEET
T ss_pred EEEc
Confidence 9954
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=26.91 E-value=2.8e+02 Score=23.27 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=45.5
Q ss_pred CCcEEEEEeC----CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC----CeEEEEE
Q 016725 46 GIRIIQAAAG----AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLS 117 (384)
Q Consensus 46 ~~~i~~i~~G----~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~----~~~~~lt 117 (384)
...|..++.. ....+....||.|..|-.......... .. ..+..........|..++... ...+.-.
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~----~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG----RR-WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS----CS-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc----cC-cceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 3468888764 345666678899999977543211110 00 011111111234588887764 3566678
Q ss_pred cCCCEEEEEcCC
Q 016725 118 REGRVYTFSWGN 129 (384)
Q Consensus 118 ~~G~vy~~G~n~ 129 (384)
.||.|+.|-...
T Consensus 132 ~dg~v~iwd~~~ 143 (351)
T 3f3f_A 132 NDGILRLYDALE 143 (351)
T ss_dssp TTCEEEEEECSS
T ss_pred CCCcEEEecCCC
Confidence 899999996544
No 102
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=26.68 E-value=3.4e+02 Score=25.51 Aligned_cols=75 Identities=7% Similarity=0.000 Sum_probs=43.5
Q ss_pred CcEEEE-----EeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCC--eEEEEE--
Q 016725 47 IRIIQA-----AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLS-- 117 (384)
Q Consensus 47 ~~i~~i-----~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~--~~~~lt-- 117 (384)
..|++| +..+.+.++||+|+.|..|--... ...+..-.......-.......|.+++.|.. .-.+++
T Consensus 125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s----~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t 200 (452)
T 3pbp_A 125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS----QEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTT 200 (452)
T ss_dssp CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT----TSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECT
T ss_pred CceeEEEeccccCCCCeEEEEecCCEEEEEEcccC----CCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecC
Confidence 357777 345679999999999999987651 1100000000011000111256888888775 345555
Q ss_pred cCCCEEEE
Q 016725 118 REGRVYTF 125 (384)
Q Consensus 118 ~~G~vy~~ 125 (384)
+.|+||+.
T Consensus 201 ~~GDIYAl 208 (452)
T 3pbp_A 201 EGGDIFAF 208 (452)
T ss_dssp TSCEEEEE
T ss_pred CCCCEEEE
Confidence 78999986
No 103
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=26.07 E-value=4.1e+02 Score=24.81 Aligned_cols=144 Identities=17% Similarity=0.031 Sum_probs=71.4
Q ss_pred cEEEEEeCCC--eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEE
Q 016725 102 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 179 (384)
Q Consensus 102 ~i~~I~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 179 (384)
.|..|+.... +.+.-..|+.|+.|-. .++ ....+. .....|..++...+...+++...++ .|+
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~--~~~----------~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~-~v~ 451 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR--NGQ----------LLQTLT--GHSSSVWGVAFSPDDQTIASASDDK-TVK 451 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT--TCC----------EEEEEE--CCSSCEEEEEECTTSSEEEEEETTS-EEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC--CCC----------EEEEec--CCCCCeEEEEECCCCCEEEEEcCCC-EEE
Confidence 4666665432 4444567788887732 111 111111 1234577777665544455444477 999
Q ss_pred EEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCcc--eEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEe
Q 016725 180 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH--AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV 257 (384)
Q Consensus 180 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~--~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i 257 (384)
.|-.+. ..+..+......|..++..... .+.-..|+.|+.|-.. +++ ...+
T Consensus 452 ~w~~~~---------------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~ 504 (577)
T 2ymu_A 452 LWNRNG---------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTL 504 (577)
T ss_dssp EEETTS---------------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEE
T ss_pred EEECCC---------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEE
Confidence 994321 1122222233455555544332 2333578889998632 110 1122
Q ss_pred eecCCCcEEEEEcC--CceEEEEecCCCEEEEe
Q 016725 258 QALNDVKAIHVATG--DYTTFVVSEDGDVYSFG 288 (384)
Q Consensus 258 ~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG 288 (384)
.. ....|..++.. ..+.+.-..||.|+.|-
T Consensus 505 ~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 505 TG-HSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EC-CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 21 12345555543 33444456788888884
No 104
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=25.64 E-value=2.2e+02 Score=21.61 Aligned_cols=106 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEEEEcC
Q 016725 49 IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG 128 (384)
Q Consensus 49 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~~G~n 128 (384)
|.--.|...+.+-+..||+|-+-.. ......-..+.......|.--..-..+.+++..+|+|| |..
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~------------~~~~~s~l~~~~v~~G~V~I~g~~sg~yL~m~~~G~v~--Gs~ 73 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRD------------RSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVD--GTR 73 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECC------------TTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTSBEE--EEC
T ss_pred heeeeccCcEEEEECCCCcEEeecC------------CCCCCcEEEEEecccCEEEEEEEcccEEEEECCCCCEe--ecc
Q ss_pred CCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEE
Q 016725 129 NDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 180 (384)
Q Consensus 129 ~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 180 (384)
.. ........+.. .....+.--..-....+++.+ +| ++|.
T Consensus 74 ~~--------s~ec~flE~~~-~~~g~v~ikg~~sg~YLamnk--~G-~lyg 113 (132)
T 3q7x_A 74 DR--------SDPGIQFQISP-EGNGEVLLRSTETGQFLRINP--DG-TVDG 113 (132)
T ss_dssp C---------CCGGGCEEEEE-EETTEEEEEETTTCCEEEECT--TS-BEEE
T ss_pred CC--------CCCceeEEEEe-ecCcEEEEEeccCCeEEEECC--CC-cCcC
No 105
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=25.27 E-value=3.5e+02 Score=23.85 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=72.7
Q ss_pred EEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEe---CCCeEEEEEcCCCEEEEEcC
Q 016725 52 AAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRVYTFSWG 128 (384)
Q Consensus 52 i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~---G~~~~~~lt~~G~vy~~G~n 128 (384)
++....+.+.-..||.|+.|-...... ...+....+..+.+ .....+.-..+|.|..|-..
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDG----------------SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEET----------------TTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTT
T ss_pred eeecCCeEEEEEcCCcEEEEEecccce----------------eeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCC
Confidence 334444556666788888886533111 00111112333322 23344555678888888432
Q ss_pred CCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEeeccc
Q 016725 129 NDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL 208 (384)
Q Consensus 129 ~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 208 (384)
.. ....... .....|..++.......+++-..+| .|+.|-.... .....+..
T Consensus 128 ~~------------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~-----------~~~~~~~~--- 179 (420)
T 3vl1_A 128 FN------------LQREIDQ-AHVSEITKLKFFPSGEALISSSQDM-QLKIWSVKDG-----------SNPRTLIG--- 179 (420)
T ss_dssp SC------------EEEEETT-SSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTC-----------CCCEEEEC---
T ss_pred Cc------------ceeeecc-cccCccEEEEECCCCCEEEEEeCCC-eEEEEeCCCC-----------cCceEEcC---
Confidence 11 1111111 2344588888766555555555588 9999965421 11222222
Q ss_pred CCCCcEEEEcC--CcceEEEeCCCCEEEEeCC
Q 016725 209 LNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 238 (384)
Q Consensus 209 ~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n 238 (384)
....|..++.. ....+.-..||.|..|-..
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 23345444443 3344555678899999654
No 106
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=24.95 E-value=4.3e+02 Score=24.73 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCcceeecccCCCcEEEEEeCCC---eeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCC---cEEEEE
Q 016725 34 VNGTPLYCRSLQGIRIIQAAAGAG---RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNI---FVVQAA 107 (384)
Q Consensus 34 ~~~~P~~~~~~~~~~i~~i~~G~~---~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~---~i~~I~ 107 (384)
+...+..........|..++.... ..+.-..||.|..|-... ..+......... .|..++
T Consensus 148 d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 148 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------------FKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------------BEEEEEECSSSCTTCCEEEEE
T ss_pred ECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------------cceeeeecccCCCCceEEEEE
Q ss_pred eCCC---eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccc--cCCCCeEEEEEeCCceeEEEeeCCCCEEEEEe
Q 016725 108 IGNF---FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT--LENIPVVQIAAGYCYLLALACQPSGMAVYSVG 182 (384)
Q Consensus 108 ~G~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~--~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 182 (384)
.... ..+.-..+|.|+.|-.... .....+..+ .....|..+... ....+++...+| .|+.|
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~~w- 279 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSG-----------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA-TIRVW- 279 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTC-----------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-EEEEE-
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCC-----------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC-cEEEE-
Q ss_pred cCCCCcccCCCCCCCCCCeEEeecccC-----CCCcEEEEcCCcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEe
Q 016725 183 CGLGGKLGHGSRTDEKHPRLIEQFQLL-----NLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV 257 (384)
Q Consensus 183 ~n~~gqlg~~~~~~~~~p~~i~~~~~~-----~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i 257 (384)
.......+..+... .....-........++...+|.++.|-... ..+...
T Consensus 280 -------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~ 334 (615)
T 1pgu_A 280 -------------DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKT 334 (615)
T ss_dssp -------------ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEE
T ss_pred -------------ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEE
Q ss_pred eecCCCcEEEEEcCCceEEEEecCCCEEEE
Q 016725 258 QALNDVKAIHVATGDYTTFVVSEDGDVYSF 287 (384)
Q Consensus 258 ~~~~~~~i~~i~~g~~~~~~lt~~g~vy~w 287 (384)
.......|..+.. .+ .+.-..+|.|..|
T Consensus 335 ~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w 362 (615)
T 1pgu_A 335 ISGHNKGITALTV-NP-LISGSYDGRIMEW 362 (615)
T ss_dssp ECCCSSCEEEEET-TT-TEEEETTSCEEET
T ss_pred EeCCCCCEEEEEe-cC-cEEECCCCeEEEE
No 107
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=24.16 E-value=6.4e+02 Score=26.48 Aligned_cols=108 Identities=12% Similarity=0.016 Sum_probs=55.9
Q ss_pred cEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC--C--eEEEEEcCCC
Q 016725 48 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--F--FTAVLSREGR 121 (384)
Q Consensus 48 ~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~--~--~~~~lt~~G~ 121 (384)
.|..++.. ....+.-..||.|..|-..... ... .+.. ....|..++... . ..+.-..||.
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----------~~~---~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGK----------LVH---TYDE-HSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC----------EEE---EEEC-CSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----------eEE---EEcC-CCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 56555553 3345555567888888654311 000 1111 123466666543 2 2333467888
Q ss_pred EEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEec
Q 016725 122 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 183 (384)
Q Consensus 122 vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 183 (384)
|..|-...... ...+. -....|..++.......+++...+| .|..|-.
T Consensus 725 v~vwd~~~~~~-----------~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg-~v~vwd~ 772 (1249)
T 3sfz_A 725 LKLWDLNQKEC-----------RNTMF--GHTNSVNHCRFSPDDELLASCSADG-TLRLWDV 772 (1249)
T ss_dssp EEEEETTSSSE-----------EEEEC--CCSSCEEEEEECSSTTEEEEEESSS-EEEEEEG
T ss_pred EEEEECCCcch-----------hheec--CCCCCEEEEEEecCCCEEEEEECCC-eEEEEeC
Confidence 99886543211 11111 1233477777665555555554588 9999954
No 108
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=24.11 E-value=3.7e+02 Score=23.61 Aligned_cols=165 Identities=7% Similarity=-0.086 Sum_probs=75.6
Q ss_pred CcEEEEEeCCC--eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCC-ceeEEEeeCCCCE
Q 016725 101 IFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC-YLLALACQPSGMA 177 (384)
Q Consensus 101 ~~i~~I~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~-~~~~l~~~~~G~~ 177 (384)
..|..++.... ..+.-..||.|+.|-...... .......+. .....|..++.... ..++++-..+| .
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg-~ 137 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNG-E 137 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSS-C
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCC-e
Confidence 35777766443 344446788999885443100 000111111 12334666666543 33444443477 9
Q ss_pred EEEEecCCCCcccCCCCCCCCCCeEEeecccCCCCcEEEEcCCc---ceEEEeCCCCEEEEeCCCCCccCCCCCCCccCc
Q 016725 178 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 254 (384)
Q Consensus 178 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p 254 (384)
|+.|-........ ....+..+.........|..++.... ..+.-..+|.|+.|-..... ..
T Consensus 138 v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~ 201 (416)
T 2pm9_A 138 IFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----------EV 201 (416)
T ss_dssp EEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----------EE
T ss_pred EEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----------cc
Confidence 9999654322000 00011111111112224444544433 23334578889999754311 01
Q ss_pred EEeeecC-----CCcEEEEEcCCc---eEEEEecCC---CEEEEeCCC
Q 016725 255 KVVQALN-----DVKAIHVATGDY---TTFVVSEDG---DVYSFGCGE 291 (384)
Q Consensus 255 ~~i~~~~-----~~~i~~i~~g~~---~~~~lt~~g---~vy~wG~n~ 291 (384)
..+.... ...|..+....+ ..+.-..++ .|+.|-...
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 1111111 334555554432 344455666 888887543
No 109
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=23.95 E-value=3.9e+02 Score=23.86 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=33.2
Q ss_pred CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCC-CCCcEEEEEeCCC--eEEEEEcCCCEEEEEcC
Q 016725 56 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQAAIGNF--FTAVLSREGRVYTFSWG 128 (384)
Q Consensus 56 ~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~-~~~~i~~I~~G~~--~~~~lt~~G~vy~~G~n 128 (384)
....+.-..||.|+.|-..... .. ..+... ....|..++.... ..+.-..||.|..|-..
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~----------~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLE----------RL---QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCC----------EE---EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEeCCCCe----------ee---EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 4455556677888888654311 00 011110 1235777776433 45556778889988654
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=23.30 E-value=3.3e+02 Score=22.80 Aligned_cols=124 Identities=9% Similarity=-0.093 Sum_probs=64.9
Q ss_pred CcEEEEEeC--CCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCC----CeEEEEEcCC
Q 016725 47 IRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSREG 120 (384)
Q Consensus 47 ~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~----~~~~~lt~~G 120 (384)
..|..++.. ....+.-..||.|..|-...... .......+.. ....|..++... ...+.-..||
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------NWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------CEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------cceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 356666653 33455556789999996643110 0001111111 234588887653 4556667899
Q ss_pred CEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCC--ceeEEEeeCCCCEEEEEecCC
Q 016725 121 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGL 185 (384)
Q Consensus 121 ~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~ 185 (384)
.|..|-......... .....+..... .....|..++.... ...+++-..+| .|+.|=...
T Consensus 82 ~v~vwd~~~~~~~~~---~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~ 143 (351)
T 3f3f_A 82 TVKLWEEDPDQEECS---GRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDG-ILRLYDALE 143 (351)
T ss_dssp CEEEEEECTTSCTTS---SCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTC-EEEEEECSS
T ss_pred eEEEEecCCCccccc---ccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCC-cEEEecCCC
Confidence 999997654321100 00111111111 23445888887655 44444444488 999996543
No 111
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=22.84 E-value=3.6e+02 Score=23.11 Aligned_cols=251 Identities=9% Similarity=-0.076 Sum_probs=113.4
Q ss_pred CcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC--CCeEEEEEcCCCE
Q 016725 47 IRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRV 122 (384)
Q Consensus 47 ~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G--~~~~~~lt~~G~v 122 (384)
..|..++... ...++-..+|.|+.|-.... . ......+.. ....|..++.. ....+.-..||.|
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~----------~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGN----------K-WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETT----------E-EEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------c-EEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 3555555432 23444446788888854321 1 001111111 12346666654 3345556778888
Q ss_pred EEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeE
Q 016725 123 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 202 (384)
Q Consensus 123 y~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 202 (384)
+.|-..... ..+..... -....|..++.......+++-..+| .|+.|-...... ...
T Consensus 77 ~vwd~~~~~----------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~-----------~~~ 133 (372)
T 1k8k_C 77 YVWTLKGRT----------WKPTLVIL-RINRAARCVRWAPNEKKFAVGSGSR-VISICYFEQEND-----------WWV 133 (372)
T ss_dssp EEEEEETTE----------EEEEEECC-CCSSCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTT-----------EEE
T ss_pred EEEECCCCe----------eeeeEEee-cCCCceeEEEECCCCCEEEEEeCCC-EEEEEEecCCCc-----------cee
Confidence 888543211 11111000 1234577777655444444443477 888875432110 111
Q ss_pred Eeec-ccCCCCcEEEEcCCc--ceEEEeCCCCEEEEeCCCCCccCCCC----CCCccCcEEeeecC--CCcEEEEEcC--
Q 016725 203 IEQF-QLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGN----EECESVPKVVQALN--DVKAIHVATG-- 271 (384)
Q Consensus 203 i~~~-~~~~~~i~~i~~g~~--~~~~lt~~g~vy~wG~n~~gqlg~~~----~~~~~~p~~i~~~~--~~~i~~i~~g-- 271 (384)
...+ ......|..++.... ..++-..+|.++.|-......-.... .........+..+. ...|..+...
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 1111 111334555554433 34455679999999753211000000 00001112222221 2245555443
Q ss_pred CceEEEEecCCCEEEEeCCCCCCCCCCCCCCCCCCCCcccccCeeeecccccCccEEEEeeeccccccceEEEEeCCCCE
Q 016725 272 DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKL 351 (384)
Q Consensus 272 ~~~~~~lt~~g~vy~wG~n~~g~lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~g~l 351 (384)
....++-..+|.|+.|-.... ..+..+......+..++.. -....++...+|.+
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~----------------------~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~d~~i 267 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKK----------------------MAVATLASETLPLLAVTFI----TESSLVAAGHDCFP 267 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGT----------------------TEEEEEECSSCCEEEEEEE----ETTEEEEEETTSSC
T ss_pred CCEEEEEeCCCEEEEEECCCC----------------------ceeEEEccCCCCeEEEEEe----cCCCEEEEEeCCeE
Confidence 334555567788888864311 1111222233345555441 12345555678888
Q ss_pred EEEeCCC
Q 016725 352 YAFGAGD 358 (384)
Q Consensus 352 ~~~G~n~ 358 (384)
+.|-...
T Consensus 268 ~i~~~~~ 274 (372)
T 1k8k_C 268 VLFTYDS 274 (372)
T ss_dssp EEEEEET
T ss_pred EEEEccC
Confidence 8886644
No 112
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=22.58 E-value=3.6e+02 Score=22.97 Aligned_cols=213 Identities=8% Similarity=-0.001 Sum_probs=100.8
Q ss_pred CcceeecccCCCcEEEEEeCC--CeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeC--CC
Q 016725 36 GTPLYCRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NF 111 (384)
Q Consensus 36 ~~P~~~~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G--~~ 111 (384)
..+..+..-. ..|..++... ...+.-..||.|+.|-...... ...+.. ....|..++.. ..
T Consensus 23 ~~~~~l~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~-h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 23 MKAIKLTGHE-RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------LGTLDG-HTGTIWSIDVDCFTK 87 (369)
T ss_dssp EEEEEEECCS-SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------------EEEECC-CSSCEEEEEECTTSS
T ss_pred cccEEEEEee-ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------------hhhhhh-cCCcEEEEEEcCCCC
Confidence 3444444333 3677776643 3444456789999996433110 011111 13347777654 33
Q ss_pred eEEEEEcCCCEEEEEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCC-----CCEEEEEecCCC
Q 016725 112 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS-----GMAVYSVGCGLG 186 (384)
Q Consensus 112 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~-----G~~vy~~G~n~~ 186 (384)
+.+....||.|+.|-......+ ..+. ....+..++.......++....+ | .|+.|-....
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~-----------~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g-~i~~~d~~~~ 152 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCV-----------ATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPG-SINIYEIERD 152 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEE-----------EEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCC-EEEEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEE-----------EEee---cCCCeEEEEEccCCCEEEEecCCccCCCC-EEEEEEecCC
Confidence 5566678899999865432111 1111 23346666665544444443335 7 8888865432
Q ss_pred CcccCCCCCCCCCCeEEeecccCCCCcEEEEcC--CcceEEEeCCCCEEEEeCCCCCccCCCCCCCccCcEEeeecCCCc
Q 016725 187 GKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK 264 (384)
Q Consensus 187 gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 264 (384)
.....-..........+.... ....+..++.. ....++-..+|.|+.|-..... .....+. .....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~-~~~~~ 220 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHE-GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----------EYVDSID-LHEKS 220 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCT-TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----------EEEEEEE-CCSSC
T ss_pred ccceeecccccceeeeccCCc-CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----------EeEEEEe-cCCCc
Confidence 221110000011111111100 11133333333 3344555678889888654311 0111111 12334
Q ss_pred EEEEEcC--CceEEEEecCCCEEEEeCC
Q 016725 265 AIHVATG--DYTTFVVSEDGDVYSFGCG 290 (384)
Q Consensus 265 i~~i~~g--~~~~~~lt~~g~vy~wG~n 290 (384)
|..+... ....++-..+|.|+.|-..
T Consensus 221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 221 ISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEECCCCCEEEEecCCceEEEEECC
Confidence 5555543 3345555678888888653
No 113
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=22.11 E-value=4.4e+02 Score=23.86 Aligned_cols=232 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEe-----CCCeEEEEEcCCCEEE
Q 016725 50 IQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI-----GNFFTAVLSREGRVYT 124 (384)
Q Consensus 50 ~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~-----G~~~~~~lt~~G~vy~ 124 (384)
+.++.+..+.++.|+.|++|.+-....-..|.. ..-.+....+..-.+.+|+.+.. ...+.+++|++|.+.-
T Consensus 51 ~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~---a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKr 127 (370)
T 3l6v_A 51 LWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN---ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKK 127 (370)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEE
T ss_pred EEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc---cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEE
Q ss_pred EEcCCCCcccCCCCCCcccccccccccCCCCeEEEEEeCCceeEEEeeCCCCEEEEEecCCCCcccCCCCCCCCCCeEEe
Q 016725 125 FSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE 204 (384)
Q Consensus 125 ~G~n~~gqlg~~~~~~~~~~~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~i~ 204 (384)
.-...+-... ..-.....+.. -...--+.+..+....++++. +| ++.-+-......+|+...- ..+-
T Consensus 128 t~l~e~~~~~----~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~--~G-~~irf~~~~v~~~gR~a~G-----V~~i 194 (370)
T 3l6v_A 128 TPLSEFAFRL----ARGKIAINLDE-GDALVGVALTDGDRDVLLFAS--NG-KTVRFGESTVRSMGRTATG-----VRGI 194 (370)
T ss_dssp EEGGGGCSCC----TTCEESSCCCT-TCCEEEEEEECSCCEEEEEET--TS-EEEEEEGGGSCBCCTTCCC-----EECC
T ss_pred eEHHHhhccc----CCceEEEEeCC-CCEEEEEEEeCCCceEEEEeC--CC-eEEEEEccccCccCCCCCC-----eeeE
Q ss_pred ecccCCCCcEEEEcCC-------------------------------------cceEEEeCCCCEEEEeCCCCCccCCCC
Q 016725 205 QFQLLNLQPVVVAAGA-------------------------------------WHAAVVGQDGRVCTWGWGRYGCLGHGN 247 (384)
Q Consensus 205 ~~~~~~~~i~~i~~g~-------------------------------------~~~~~lt~~g~vy~wG~n~~gqlg~~~ 247 (384)
.+. .+.+|+.+..-. .+.+.+|++|-.--.-...|-..+.+.
T Consensus 195 ~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~ 273 (370)
T 3l6v_A 195 RLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGT 273 (370)
T ss_dssp CCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTS
T ss_pred EeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCC
Q ss_pred CCCccCcEEeeecCCCcEEEEEcCCceEEEEecCCCEEEEeCCCCCCCCCCC
Q 016725 248 EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA 299 (384)
Q Consensus 248 ~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~vy~wG~n~~g~lg~~~ 299 (384)
.-.... +..+.-...--..+....+..+++|+.|++.-.-....-..|...
T Consensus 274 kGv~~~-k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR~t 324 (370)
T 3l6v_A 274 QGVIGI-QTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNT 324 (370)
T ss_dssp CCEESS-CCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCSSS
T ss_pred cceEEE-EecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCCCC
No 114
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Probab=21.61 E-value=2.9e+02 Score=21.44 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred CcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEEEcCCCEEE
Q 016725 47 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 124 (384)
Q Consensus 47 ~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~lt~~G~vy~ 124 (384)
.+.+++-|-..+.+-+..||.|-.-.. ......-..+.......|.--..-....++.+++|+||+
T Consensus 14 ~R~~~LY~~~g~~LqI~~dG~V~Gt~~------------~~~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~Lyg 79 (145)
T 1nun_A 14 VRWRKLFSFTKYFLKIEKNGKVSGTKK------------ENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGKLYG 79 (145)
T ss_dssp SEEEEEEETTSCEEEECTTSCEEEECC------------SCCTTSCEEEEEEETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ceEEEEEEcCCeEEEECCCCcEeeecC------------CCCCceeEEEEEecCCeEEEEEcccCcEEEEcCCCCEee
No 115
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=21.03 E-value=4e+02 Score=22.93 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=16.7
Q ss_pred EeCCCeeEEEEcCCCEEEEecCC
Q 016725 53 AAGAGRTMLISDAGQVYAFGKDS 75 (384)
Q Consensus 53 ~~G~~~~~~lt~~g~vy~~G~n~ 75 (384)
..+.-..++++.+|++|..+...
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCC
Confidence 34555677888888988877654
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=20.83 E-value=4.2e+02 Score=23.10 Aligned_cols=158 Identities=9% Similarity=-0.005 Sum_probs=79.3
Q ss_pred cEEEEEeCCCeeEEEEcCCCEEEEecCCC-CCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEEE--EcCCCEEE
Q 016725 48 RIIQAAAGAGRTMLISDAGQVYAFGKDSF-GEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL--SREGRVYT 124 (384)
Q Consensus 48 ~i~~i~~G~~~~~~lt~~g~vy~~G~n~~-gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~l--t~~G~vy~ 124 (384)
.|..+.......++ ..+++|+.|-.... ..+.. ...|. .+..++. ...++. ..+|.|..
T Consensus 102 ~v~~v~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~-------~~~~~--------~~~~~s~--~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 102 PVKDLFLSREFIVV-SYGDVISVFKFGNPWKRITD-------DIRFG--------GVCEFSN--GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp CEEEEEECSSEEEE-EETTEEEEEESSTTCCBSSC-------CEEEE--------EEEEEET--TEEEEEESSCTTCEEE
T ss_pred ceEEEEEcCCEEEE-EEcCEEEEEECCCCceeeEE-------eccCC--------ceEEEEc--cEEEEeCCCcCcEEEE
Confidence 67777777665444 45788999876543 11110 00011 1223332 222222 57899999
Q ss_pred EEcCCCCcccCCCC---CCcccc-cccccccCCCCeEEEEEeCCceeEEEeeCCCCE-EEEEecCCCCcccCCCCCCCCC
Q 016725 125 FSWGNDARLGHHTE---PNDVEP-HPLLGTLENIPVVQIAAGYCYLLALACQPSGMA-VYSVGCGLGGKLGHGSRTDEKH 199 (384)
Q Consensus 125 ~G~n~~gqlg~~~~---~~~~~~-~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~-vy~~G~n~~gqlg~~~~~~~~~ 199 (384)
|-.....++-.... .....| .... .-....|..++...+...+++-..|| . |..|-....
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~-~~v~iwd~~~~------------- 228 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDG-TIIRVFKTEDG------------- 228 (355)
T ss_dssp EECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTC-SEEEEEETTTC-------------
T ss_pred EECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCC-CEEEEEECCCC-------------
Confidence 97654322111000 001112 1111 12345688888887777777766688 8 999965421
Q ss_pred CeEEeecc-c-CCCCcEEEEcCC--cceEEEeCCCCEEEEeCCC
Q 016725 200 PRLIEQFQ-L-LNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGR 239 (384)
Q Consensus 200 p~~i~~~~-~-~~~~i~~i~~g~--~~~~~lt~~g~vy~wG~n~ 239 (384)
..+..+. . ....|..++-.. .+.+.-..|+.|.+|-...
T Consensus 229 -~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 229 -VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp -CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred -cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 1222222 0 223455555443 3445556889999997644
No 117
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=20.60 E-value=4.9e+02 Score=23.74 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=49.2
Q ss_pred CcceeecccCCCcEEEEEeCCCeeEEEEcCCCEEEEecCCCCCcccCCCCceeeecCEEecCCCCCcEEEEEeCCCeEEE
Q 016725 36 GTPLYCRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAV 115 (384)
Q Consensus 36 ~~P~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~p~~i~~~~~~~i~~I~~G~~~~~~ 115 (384)
..|.....+.+ |..|++ ....+++..++.|..|--....+ ... ...+ ...+.++.+-....++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-------~~~------~~~~-~~~v~~i~~~~p~~av 141 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEELSE-------FRT------VTSF-EKPVFQLKNVNNTLVI 141 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSSTTC-------EEE------EEEC-SSCEEEEEECSSEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-------cCc------ccee-ecceeeEEecCCCEEE
Confidence 45543334554 999999 77777788889999997655432 111 1111 1235666666556888
Q ss_pred EEcCCCEEEEEcC
Q 016725 116 LSREGRVYTFSWG 128 (384)
Q Consensus 116 lt~~G~vy~~G~n 128 (384)
+++||.|+.|-..
T Consensus 142 ~~~dG~L~v~dl~ 154 (388)
T 1xip_A 142 LNSVNDLSALDLR 154 (388)
T ss_dssp EETTSEEEEEETT
T ss_pred EECCCCEEEEEcc
Confidence 8999999999544
No 118
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=20.16 E-value=4e+02 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=15.9
Q ss_pred eEEEEecCCCEEEEeCCCCCCCCCC
Q 016725 274 TTFVVSEDGDVYSFGCGESASLGHN 298 (384)
Q Consensus 274 ~~~~lt~~g~vy~wG~n~~g~lg~~ 298 (384)
..+.++.+|++ .|-.+.....|..
T Consensus 245 ~~~~~~~~g~~-~W~~~~~~~~~~~ 268 (276)
T 3no2_A 245 QLVEIDSEGKV-VWQLNDKVKFGMI 268 (276)
T ss_dssp SEEEECTTSBE-EEEECCTTTSCCC
T ss_pred eEEEECCCCCE-EEEecCcccccce
Confidence 57778888886 6666655555543
Done!