Query 016726
Match_columns 384
No_of_seqs 311 out of 1892
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 1.6E-36 5.4E-41 298.1 15.9 223 103-369 6-234 (320)
2 3v5u_A Uncharacterized membran 99.6 7E-16 2.4E-20 151.4 12.0 137 103-263 165-305 (320)
3 2kdc_A Diacylglycerol kinase; 9.0 6.1E+02 0.021 20.5 5.8 49 83-133 36-84 (121)
4 3lae_A UPF0053 protein HI0107; 8.2 1.3E+02 0.0043 22.3 1.2 17 133-149 36-52 (81)
5 3llb_A Uncharacterized protein 8.1 1.3E+02 0.0046 22.3 1.3 17 133-149 36-52 (83)
6 3mk7_C Cytochrome C oxidase, C 6.8 1.1E+03 0.039 21.4 7.5 11 240-250 6-16 (311)
7 2rk5_A Putative hemolysin; str 6.4 1.8E+02 0.0063 21.7 1.3 16 133-148 35-50 (87)
8 2pli_A Uncharacterized protein 5.3 2.3E+02 0.0079 21.3 1.3 16 133-148 45-60 (91)
9 2r2z_A Hemolysin; APC85144, en 5.3 2.3E+02 0.0079 21.3 1.3 16 133-148 43-58 (93)
10 2euc_A Hypothetical protein YF 5.3 1.7E+02 0.0058 23.8 0.5 13 77-89 72-84 (130)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=1.6e-36 Score=298.09 Aligned_cols=223 Identities=20% Similarity=0.172 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchhhHHhhhc-chhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 016726 103 GWVFFLSLLGITPLAERLGYATEQLTFFTG--ATVGGLLNATFG-NATELIISIYALKSGMIRVVQLSLLGSILSNMLLV 179 (384)
Q Consensus 103 ~~vF~l~~laiiplA~~l~~ate~LA~~~G--~~igGLl~atfG-s~pELivsi~Al~~g~~~Iv~gniiGS~L~NlLLV 179 (384)
...|+.+++.++++|++++++++++|+++| +.++|++++++| |+||+++++.|..+|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 456899999999999999999999999998 999999999999 89999999999999999999999999999999999
Q ss_pred HHHhhhhccceeccceeEeechhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCccccchHHHHHHHHHHHHHHHHHHH
Q 016726 180 LGCAFFCGGLICCKKEQVFNKASAVVNSGLLLMAVMGLVFPAVLHYTHTEVHFGKSELALSRFSSCIMLVAYGAYLFFQL 259 (384)
Q Consensus 180 LG~s~l~ggi~~~~~~q~f~~~~a~~~ssllllav~~lllp~~~~~~~~~~~~~~~~~~lSr~~siiLL~~Y~~yL~fql 259 (384)
+|+|++++|++. + +.+. ....+++++++.+ ++..+ +. ++|++|++|+.+|+.|++|++
T Consensus 86 lG~~~li~p~~v-~--~~~~-----~d~~~~l~~~~~l-~~~~~------------~g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 86 LGLSAIISPIIV-D--KNLQ-----KNILVYLLFVIFA-AVIGI------------DG-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHHSCBCC-C--HHHH-----HHHHHHHHHHHHH-HHHTT------------TC-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc-c--HHHH-----HHHHHHHHHHHHH-HHHHH------------cc-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 2 2221 2222343333322 22111 23 899999999999999999999
Q ss_pred HhhhhccCCCccccccCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhhHHhhhcchhHHhhhhhccCCcceee
Q 016726 260 RGQTELYVPLSEDENQTGNDADHGGNHDDNEAPEISKWESLIWLAIMTAWISILSQYVVDAIEVTFGFSTSLCCSDVYHK 339 (384)
Q Consensus 260 ~th~~lf~~~~e~~~~~~~~~~~~g~~~~~~~~~~s~~~aii~Lvi~tvli~~~Se~LV~sI~~~~~ia~sfgis~~~IG 339 (384)
++|++ +++ +++++++.+.|+++++++++++++.++||++|++++ .+++.+|+|+.++|
T Consensus 144 ~~~~~------~~~-------------~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~---~ia~~~gis~~~iG 201 (320)
T 3v5u_A 144 KNGSA------EIE-------------ENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAK---KIALALDISDKVIG 201 (320)
T ss_dssp HHTBC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTCCCHHHH
T ss_pred Hhccc------ccc-------------cccccccccHHHHHHHHHHHHHHHHHHHHhccccHH---HHHHHhCCchHHHH
Confidence 99874 111 111223467889999999999999999999999877 55689999999999
Q ss_pred hhhhh---ccccchHHHHHHHhCCCeeeeeecc
Q 016726 340 ISMVY---DFMDNCPPLFIICDGKWVLRLGNTR 369 (384)
Q Consensus 340 lTiva---sLpel~~si~aa~kg~~dlaiGNi~ 369 (384)
+|+++ ++||.++++.+++||+.|+++||++
T Consensus 202 ltlva~gtslPE~~~sv~aa~~g~~~laig~ii 234 (320)
T 3v5u_A 202 FTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVI 234 (320)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99987 9999999999999999999999998
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.64 E-value=7e-16 Score=151.36 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchhhHHhhhc-chhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 016726 103 GWVFFLSLLGITPLAERLGYATEQLTFFTG--ATVGGLLNATFG-NATELIISIYALKSGMIRVVQLSLLGSILSNMLLV 179 (384)
Q Consensus 103 ~~vF~l~~laiiplA~~l~~ate~LA~~~G--~~igGLl~atfG-s~pELivsi~Al~~g~~~Iv~gniiGS~L~NlLLV 179 (384)
.+.++.+++.++.+|++++++++++++.+| +.+.|++.+++| |+||+++++.|.++|+.+++.||++|||++|++++
T Consensus 165 ~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v 244 (320)
T 3v5u_A 165 LVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGA 244 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHH
Confidence 356788999999999999999999999998 899999999999 99999999999999999999999999999999999
Q ss_pred HHHhhhhccceeccceeEeechhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCccccchHHHHHHHHHHHHH-HHHHH
Q 016726 180 LGCAFFCGGLICCKKEQVFNKASAVVNSGLLLMAVMGLVFPAVLHYTHTEVHFGKSELALSRFSSCIMLVAYGA-YLFFQ 258 (384)
Q Consensus 180 LG~s~l~ggi~~~~~~q~f~~~~a~~~ssllllav~~lllp~~~~~~~~~~~~~~~~~~lSr~~siiLL~~Y~~-yL~fq 258 (384)
+|++.++.|++. +.+| ..+++++++.+. . .+. .++++|++|++++.+|++ |+++.
T Consensus 245 ~g~~~li~p~~~----~~~d-------~~~~l~~~~ll~-~-~~~-----------~~~i~~~eG~~ll~~Y~~~y~~~~ 300 (320)
T 3v5u_A 245 LAVGSLFMHLPA----ENVQ-------MAVLVIMSLLLY-L-FAK-----------YSKIGRWQGILFLALYIIAIASLR 300 (320)
T ss_dssp HHHHHHHSCBCC----CHHH-------HHHHHHHHHHHH-H-HHH-----------HSCBSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhccccc----hHHH-------HHHHHHHHHHHH-H-HHh-----------CCcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999998864 1222 112322222222 2 222 257899999999999999 99988
Q ss_pred HHhhh
Q 016726 259 LRGQT 263 (384)
Q Consensus 259 l~th~ 263 (384)
++.++
T Consensus 301 ~~~~~ 305 (320)
T 3v5u_A 301 MGGGS 305 (320)
T ss_dssp SSCC-
T ss_pred HHhhc
Confidence 87555
No 3
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.98 E-value=6.1e+02 Score=20.52 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 016726 83 NLLMPFGPLAIMVHNLTGHKGWVFFLSLLGITPLAERLGYATEQLTFFTGA 133 (384)
Q Consensus 83 n~Ll~fvPl~i~~~~~~~~~~~vF~l~~laiiplA~~l~~ate~LA~~~G~ 133 (384)
-...+.+|+++..+.... -|.+.+..++++..+|.+..+.|.+..+.++
T Consensus 36 ~~~~~~i~~~~~l~~s~~--e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 36 VAVLLAVVIACWLDVDAI--TRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHHHHHHHHHCCCCCS--HHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555666666543322 4566677778999999999999999988873
No 4
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=8.20 E-value=1.3e+02 Score=22.31 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.4
Q ss_pred ccchhhHHhhhcchhHH
Q 016726 133 ATVGGLLNATFGNATEL 149 (384)
Q Consensus 133 ~~igGLl~atfGs~pEL 149 (384)
+|+||++..-+|..||.
T Consensus 36 ~Tl~G~i~~~lg~iP~~ 52 (81)
T 3lae_A 36 RTFNGLILEHLEEIPDE 52 (81)
T ss_dssp SBHHHHHHHHCSSCCCT
T ss_pred ccHHHHHHHHhCCCCCC
Confidence 59999999999988863
No 5
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=8.14 E-value=1.3e+02 Score=22.28 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=14.4
Q ss_pred ccchhhHHhhhcchhHH
Q 016726 133 ATVGGLLNATFGNATEL 149 (384)
Q Consensus 133 ~~igGLl~atfGs~pEL 149 (384)
+|+||++..-+|..|+.
T Consensus 36 ~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp SBHHHHHHHHHSSCCCT
T ss_pred cCHHHHHHHHhCcCCCC
Confidence 59999999999988863
No 6
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=6.85 E-value=1.1e+03 Score=21.39 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 016726 240 SRFSSCIMLVA 250 (384)
Q Consensus 240 Sr~~siiLL~~ 250 (384)
|.++.++-++.
T Consensus 6 ~~~~~~~~~~~ 16 (311)
T 3mk7_C 6 SGYIALLTLGT 16 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 7
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=6.39 E-value=1.8e+02 Score=21.65 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.6
Q ss_pred ccchhhHHhhhcchhH
Q 016726 133 ATVGGLLNATFGNATE 148 (384)
Q Consensus 133 ~~igGLl~atfGs~pE 148 (384)
+|+||++..-+|.+|+
T Consensus 35 dTl~G~v~~~lg~iP~ 50 (87)
T 2rk5_A 35 DTIAGFYLTGVGTIPS 50 (87)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred ccHHHHHHHHhCcCCC
Confidence 5999999988888775
No 8
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=5.30 E-value=2.3e+02 Score=21.31 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.5
Q ss_pred ccchhhHHhhhcchhH
Q 016726 133 ATVGGLLNATFGNATE 148 (384)
Q Consensus 133 ~~igGLl~atfGs~pE 148 (384)
+|+||++.--+|.+|+
T Consensus 45 dTlgG~i~~~lg~iP~ 60 (91)
T 2pli_A 45 DTIGGLVIQELGHLPV 60 (91)
T ss_dssp CBHHHHHHHHHSSCCC
T ss_pred ccHHHHHHHHhCCCCC
Confidence 4999999988888776
No 9
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=5.30 E-value=2.3e+02 Score=21.28 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.5
Q ss_pred ccchhhHHhhhcchhH
Q 016726 133 ATVGGLLNATFGNATE 148 (384)
Q Consensus 133 ~~igGLl~atfGs~pE 148 (384)
+|+||++..-+|.+|+
T Consensus 43 ~TlgG~i~~~lg~iP~ 58 (93)
T 2r2z_A 43 DTMAGYLITALGTIPD 58 (93)
T ss_dssp CBHHHHHHHHHSSCCC
T ss_pred ccHHHHHHHHhCCCCC
Confidence 5999999988888776
No 10
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=5.29 E-value=1.7e+02 Score=23.81 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHH
Q 016726 77 VFSNKLNLLMPFG 89 (384)
Q Consensus 77 ~~~s~~n~Ll~fv 89 (384)
.+++|++.|+|||
T Consensus 72 ~LssYL~~Llpfv 84 (130)
T 2euc_A 72 KLSGYLSTLLPYV 84 (130)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHH
Done!