Query 016727
Match_columns 384
No_of_seqs 119 out of 161
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03175 hypothetical protein; 100.0 4E-124 8E-129 933.1 26.5 368 8-383 1-393 (415)
2 PLN02559 chalcone--flavonone i 100.0 1.7E-46 3.7E-51 352.7 12.4 171 201-383 2-193 (230)
3 PLN02804 chalcone isomerase 100.0 7E-44 1.5E-48 331.7 16.1 164 205-383 3-187 (206)
4 PLN03174 Chalcone-flavanone is 100.0 1.3E-42 2.9E-47 335.3 17.0 168 205-383 76-257 (278)
5 PLN02311 chalcone isomerase 100.0 2.3E-41 5E-46 325.7 17.6 180 191-383 55-251 (271)
6 PF02431 Chalcone: Chalcone-fl 100.0 2.1E-33 4.6E-38 256.2 12.2 157 216-383 1-181 (199)
7 COG4075 Uncharacterized conser 26.8 1.2E+02 0.0025 26.7 4.4 62 259-329 30-91 (110)
8 cd01470 vWA_complement_factors 12.5 1.6E+02 0.0035 26.5 2.3 22 251-273 153-176 (198)
9 PHA02823 chemokine binding pro 12.2 2.9E+02 0.0063 27.4 4.0 87 235-328 94-182 (255)
10 PF10126 Nit_Regul_Hom: Unchar 11.0 4.6E+02 0.01 23.3 4.5 62 259-330 30-92 (110)
No 1
>PLN03175 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-124 Score=933.10 Aligned_cols=368 Identities=53% Similarity=0.824 Sum_probs=355.7
Q ss_pred eecCCCCCccCCcchhhhccccCccccc-----------CcccccCcchhHhHHHHhHhhhhcceeeeeecCCCCccchh
Q 016727 8 MDFNGGDPYILPTEFFLARSLGDHLFSQ-----------SSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRR 76 (384)
Q Consensus 8 ~~~~~~~~~~~p~~~~~~~~~~~~l~~~-----------~~~~~~~g~~~~~~af~~~~k~a~a~~~~~~~~~~~~~~~~ 76 (384)
||+||+++|.||+|++||||||++||+| ||+||+|||+||||||+|++||||||||||||+|+||++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (415)
T PLN03175 1 SNLDHNSGYLFPIDSPLSHDLGLGLFSHVGTFVDNSLHQSRQICIPGSLAFQEAFSCISKFAGALLFWFSRASNPKLSRR 80 (415)
T ss_pred CCCCCCCccccCCCcccccccccchhhcccccccCcccccceeecCccHHHHHHHHHHHHhhhheEEEeccCCCHHHHHH
Confidence 7899999999999999999999999998 49999999999999999999999999999999999999999
Q ss_pred hcccCCCCccccccccccccccccccccccccccccCCCCccccchhhhhhhHHHHHHHHhhhcccccchhhhhhhhccC
Q 016727 77 IAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIP 156 (384)
Q Consensus 77 ~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~la~a~~p 156 (384)
++++++ ++|++|++|++||++|||||+||||||.+|+||++|++|++|||+||||||||+||+|||||||||||+||
T Consensus 81 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a~~p 157 (415)
T PLN03175 81 LSGGQG---SSSRASQSHIAQVKSCMQNLAGLPFGSQSKEEHAGQLLFAKISSFTIGRLWNEAERLHSCNVLSLAAALVP 157 (415)
T ss_pred HhcCCC---CCCchHHHhHHHhhhHhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHhhccccHHHHHhhhCC
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeeccCccccccccCCCCCccccCccCCCCCCCCCCCCcceecCCCCcccCceecccccCCCCCCCCcce
Q 016727 157 PLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEV 236 (384)
Q Consensus 157 p~~~~s~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~ 236 (384)
|||||||||||||++|+|+++||++||+|||++|++|+++++|++++|+++|||+||++||+.++ ++++++++++
T Consensus 158 ~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vEPkTgv~FP~~l~-----~~p~s~~sl~ 232 (415)
T PLN03175 158 PLENISPKVLAMPLGNDDVQVSEPTDQRYCEVEHSGCSGLSFPDLNWTRDAVEPRTGIEFPMLLD-----ENNSSLTSEV 232 (415)
T ss_pred CccccChhheeeeccCCCcccccccCCCcccccCcCCCccCcCcccccccccccCCCCcCCcccc-----CCCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999994 4788889999
Q ss_pred EEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhH
Q 016727 237 LVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAV 316 (384)
Q Consensus 237 LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~v 316 (384)
|+|+|+|+|+|+|+|+|||||||||+|+++++.+|++||||||++||+++++||+||+++|++|+||+++++++++++++
T Consensus 233 L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~ 312 (415)
T PLN03175 233 LVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTV 312 (415)
T ss_pred eeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHH
Confidence 99999999999988999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcc-c---ccc-ccccc-CccCCCCCeEEEEEccCCeEE--------EEEecchhhHHHHHHhhc
Q 016727 317 KDVFEKSLRARLEKVNHL-A---YGI-TLVFL-QISLTHGTFLAYIRQIQTLII--------TAWKVLVLTSAKIFHYLW 382 (384)
Q Consensus 317 rdAfeeSLg~RLkk~~~~-e---Le~-ks~Fk-~~~lpkGs~I~ft~sp~GkLv--------~~IEsk~L~~Alfd~Yl~ 382 (384)
++||||++++||++.+++ | |++ .++|+ +++||||++|+|+++|+|.++ ++|||+.||+|+|+.|+|
T Consensus 313 ~~Afees~g~RLkkt~gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~ggLtisInG~~vgvIEnk~L~eALfdiyLG 392 (415)
T PLN03175 313 RDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEIGGNQIGAVRSKDLCRAFFDMYIG 392 (415)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCCceEEEECCeeeeEeccHHHHHHHHHHHcC
Confidence 999999999999988743 2 787 99995 999999999999999988765 589999999999999999
Q ss_pred c
Q 016727 383 E 383 (384)
Q Consensus 383 ~ 383 (384)
|
T Consensus 393 d 393 (415)
T PLN03175 393 D 393 (415)
T ss_pred C
Confidence 7
No 2
>PLN02559 chalcone--flavonone isomerase
Probab=100.00 E-value=1.7e-46 Score=352.67 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=151.5
Q ss_pred CCCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCCh
Q 016727 201 LSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISV 280 (384)
Q Consensus 201 ~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa 280 (384)
++.+.++|| ||+||+.+ ++|++.++++|+|+|+|+|+|+| |+|||||||+|||++++.. |++|||||++
T Consensus 2 ~~~~~v~ve---~i~FP~~v------~~p~s~~~l~L~GaG~Rg~eI~~-~~vKftAiGvYle~~av~~-L~~KWKGKsa 70 (230)
T PLN02559 2 PAVTEVQVE---GVTFPPSV------KPPGSSNPLFLGGAGVRGLEIQG-KFIKFTAIGVYLEGNAVPS-LAKKWKGKTA 70 (230)
T ss_pred CccceEeEc---ceecCCcc------cCCCCCCceEEEeccccceEEee-EEEEEEEEEEEechhHHHH-HHHhhCCcCH
Confidence 467888999 99999999 68888899999999999999998 8999999999999998866 8899999999
Q ss_pred hhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhc---Cccc---ccc-cccccCccCCCCCeE
Q 016727 281 AELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKV---NHLA---YGI-TLVFLQISLTHGTFL 353 (384)
Q Consensus 281 ~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~---~~~e---Le~-ks~Fk~~~lpkGs~I 353 (384)
+||.++++||+||+++|+||++|++|++ .+++.++++++++...+|+|.. +++| |++ .++|++++||||++|
T Consensus 71 ~EL~~~~~Ff~div~~p~EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I 149 (230)
T PLN02559 71 EELADSVAFFRDVVTGDFEKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSI 149 (230)
T ss_pred HHHhcCHHHHHHHHcCcchhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEE
Confidence 9999999999999999999999999975 3556666555555555555544 4443 888 999999999999999
Q ss_pred EEEEccCCeEE--------------EEEecchhhHHHHHHhhcc
Q 016727 354 AYIRQIQTLII--------------TAWKVLVLTSAKIFHYLWE 383 (384)
Q Consensus 354 ~ft~sp~GkLv--------------~~IEsk~L~~Alfd~Yl~~ 383 (384)
+|||+|+|+|+ ++|||+.||+|+||.|+|+
T Consensus 150 ~ft~sp~g~L~isfs~dg~ipe~~~~~Ienk~l~eAv~e~~IG~ 193 (230)
T PLN02559 150 LFTHSPTGSLTVAFSKDSSVPEVGNAVIENKLLCEAVLESIIGK 193 (230)
T ss_pred EEEECCCCcEEEEEecCCCCCccceEEEechHHHHHHHHHHccC
Confidence 99999999987 4899999999999999997
No 3
>PLN02804 chalcone isomerase
Probab=100.00 E-value=7e-44 Score=331.65 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=150.0
Q ss_pred cceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhc
Q 016727 205 RHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELN 284 (384)
Q Consensus 205 ~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~ 284 (384)
.++|| |++||+.+ + +++++++|+|+|+|+|+|+| ++|||||||+|+|++ ++.+| .||+|||++||.
T Consensus 3 ~~~v~---~v~FP~~i------~--~ss~~l~L~G~G~R~~~I~~-~~iK~yAiGvYle~~-~~~~L-~kwkgk~a~EL~ 68 (206)
T PLN02804 3 MVMVE---DIPFPPQI------T--TSSKPLSLLGHGITDIEIHF-LQIKFTAIGVYLEPS-VKGHL-QSWKGKPGSELA 68 (206)
T ss_pred eEEec---CcCCCcee------e--cCCCcceEEeecccceEEEe-EEEEEEEEEEEecHH-HHHHH-HHhcCCCHHHHh
Confidence 46789 99999999 3 45578999999999999999 599999999999995 55558 699999999999
Q ss_pred ccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcC---ccc---ccc-cccccCccCCCCCeEEEEE
Q 016727 285 KCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVN---HLA---YGI-TLVFLQISLTHGTFLAYIR 357 (384)
Q Consensus 285 ~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~---~~e---Le~-ks~Fk~~~lpkGs~I~ft~ 357 (384)
++++||+||+++|+||++||||++ .+++.+|++++++++++||++.+ ++| |++ .++|++++||||++|+|+|
T Consensus 69 ~~~~Ff~dlv~~p~ek~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~ 147 (206)
T PLN02804 69 EDDDFFQALIQAPVEKLIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYHF 147 (206)
T ss_pred cCHHHHHHHHcCChhhEEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEEe
Confidence 999999999999999999999997 68999999999999999999988 323 888 9999999999999999999
Q ss_pred cc-CCeEE------------EEEecchhhHHHHHHhh-cc
Q 016727 358 QI-QTLII------------TAWKVLVLTSAKIFHYL-WE 383 (384)
Q Consensus 358 sp-~GkLv------------~~IEsk~L~~Alfd~Yl-~~ 383 (384)
++ +|.+. ++|||+.||+|++|.|+ |+
T Consensus 148 ~~~~g~l~Isfs~dg~e~~~~~Ienk~l~~avl~~yi~G~ 187 (206)
T PLN02804 148 PATSGIVEISFSTEGKEESKLTVENANVVEMIQKWYLGGE 187 (206)
T ss_pred cCCCCeEEEEEecCCcccceeEEecHHHHHHHHHHHhcCC
Confidence 98 88875 47999999999999999 86
No 4
>PLN03174 Chalcone-flavanone isomerase-related; Provisional
Probab=100.00 E-value=1.3e-42 Score=335.33 Aligned_cols=168 Identities=30% Similarity=0.506 Sum_probs=153.6
Q ss_pred cceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChhhhc
Q 016727 205 RHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELN 284 (384)
Q Consensus 205 ~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~EL~ 284 (384)
..+|||+||++||++++ + +..|+|+|+|+|+|+|+|+|||||||+|+|+++++++|++||+|++++||+
T Consensus 76 ~~~vEp~tGv~FP~~l~------~-----~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~ 144 (278)
T PLN03174 76 PSVVESKTGVSFPAEIG------D-----SRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELK 144 (278)
T ss_pred CceeccCCCCcCCCccc------C-----CCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhh
Confidence 35899999999999994 2 123779999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCccc----ccc-cccccC-ccCCCCCeEEEEEc
Q 016727 285 KCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLA----YGI-TLVFLQ-ISLTHGTFLAYIRQ 358 (384)
Q Consensus 285 ~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~e----Le~-ks~Fk~-~~lpkGs~I~ft~s 358 (384)
++.+||+||+++|++|++||+|+|++++.+++|+||++++++||+++++++ |++ .++|++ .+||||++|+|+++
T Consensus 145 ~s~~f~~dil~~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~IekF~~~F~~~~~l~kGdvI~~~~~ 224 (278)
T PLN03174 145 GNKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQSFTSLFKDEYKIPKGSVIDLSRE 224 (278)
T ss_pred cCHHHHHHHHcCCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhccccCCCCCEEEEEEc
Confidence 999999999999999999999999999999999999999999999999643 677 999995 56999999999999
Q ss_pred cCCeE--------EEEEecchhhHHHHHHhhcc
Q 016727 359 IQTLI--------ITAWKVLVLTSAKIFHYLWE 383 (384)
Q Consensus 359 p~GkL--------v~~IEsk~L~~Alfd~Yl~~ 383 (384)
|++.+ .++|+|+.||+|||+.||||
T Consensus 225 Pg~gl~vsi~Gk~~g~Ie~~~f~~ALf~iyLGd 257 (278)
T PLN03174 225 PGHVLRTTIDGKEVGSIQSKLLCRSILDLYIGE 257 (278)
T ss_pred CCCeEEEEECCEEeeEECCHHHHHHHHHHHcCC
Confidence 76554 56999999999999999997
No 5
>PLN02311 chalcone isomerase
Probab=100.00 E-value=2.3e-41 Score=325.72 Aligned_cols=180 Identities=19% Similarity=0.254 Sum_probs=163.1
Q ss_pred ccCCCCCCCCCCCCcceecCCCCcccCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhh
Q 016727 191 HRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEK 270 (384)
Q Consensus 191 ~~~~~~~~p~~~~t~~vVEPkTGI~FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~ 270 (384)
..|+|+++|+.. .++||+|||+||+.+ +.+++.++++|.|+|+|+|.|.+ ++|||||+|+|+|+++++.
T Consensus 55 ~~~~~~~~~~~~---~~~ep~TgV~Fp~~v------~~~~~s~~L~LnGaGvR~K~I~~-~~vKVYA~GLYL~~~~~~~- 123 (271)
T PLN02311 55 VKSAAFSVGSAE---YAEETATSVKFQRSL------TLPGCSSPLSLLGTGYREKVFAI-IGVKVYAAGLYVNPSILSG- 123 (271)
T ss_pred eeccccccCccc---ceecCCcCCcCCccc------cCCCCCCceeEeeeEEeeEEEee-eeEEEEEEEEEechhhhhh-
Confidence 578999998765 899999999999999 56777789999999999999987 7999999999999998766
Q ss_pred hCCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCccc---ccc-cccccCcc
Q 016727 271 LGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNHLA---YGI-TLVFLQIS 346 (384)
Q Consensus 271 L~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~~e---Le~-ks~Fk~~~ 346 (384)
|+ ||+|++++||.++.+||+||+++|++|++||+|.+ .++..++++||+|++++|+++.++++ |++ .++|++++
T Consensus 124 L~-kwkgk~a~eL~~~~~ff~dIi~a~~eK~irI~~iR-~v~g~~~~~A~~eg~~~rlk~~~~~~~~aLekF~~~F~~~~ 201 (271)
T PLN02311 124 LS-AWKGRSADEIQRDSSLFSSIFQAPAEKSLQIVLVR-DVDGKTFWDALDEAISPRIKAPSPDDTSALSTFRSIFQNRS 201 (271)
T ss_pred Hh-hhcCCCHHHHhcchHHHHHHhcCCcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC
Confidence 87 99999999999999999999999999999999986 69999999999999999998776433 777 99999999
Q ss_pred CCCCCeEEEEEccCCeE-------------EEEEecchhhHHHHHHhhcc
Q 016727 347 LTHGTFLAYIRQIQTLI-------------ITAWKVLVLTSAKIFHYLWE 383 (384)
Q Consensus 347 lpkGs~I~ft~sp~GkL-------------v~~IEsk~L~~Alfd~Yl~~ 383 (384)
||||++|+|+|.|+|.+ .++|+|+.||+|||+.|||+
T Consensus 202 l~kGd~I~~~~~p~~~~~v~~s~~g~~~~~~g~Ies~~f~~ALf~i~LGd 251 (271)
T PLN02311 202 LNKGTVIFLTWINPSKMLVCISSEGLPSSVDATIESGNVTSALFDVFFGD 251 (271)
T ss_pred CCCCCEEEEEEeCCCceEEEEecCCcccceeEEECCHHHHHHHHHHhcCC
Confidence 99999999999986543 35799999999999999997
No 6
>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5.5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....
Probab=100.00 E-value=2.1e-33 Score=256.20 Aligned_cols=157 Identities=25% Similarity=0.376 Sum_probs=134.5
Q ss_pred cCceecccccCCCCCCCCcceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhCCccCCCChh-hhcccchhHHHHh
Q 016727 216 FPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVA-ELNKCGGFYEDLL 294 (384)
Q Consensus 216 FP~~L~~~~~g~~~ss~~sl~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~~Kwkgksa~-EL~~~~dFf~dLl 294 (384)
||..+ +.|.+.++++|+|+|+|+++|+ +|||||+|+|+|+++++.+ ..+|.++.++ ++.++.+||++|+
T Consensus 1 FP~~i------~~p~~~~~l~L~G~GvR~~~~~---~ikVYavG~Yv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll 70 (199)
T PF02431_consen 1 FPKKI------TSPTSSEELSLLGAGVRTVSFL---NIKVYAVGLYVDDSDAKKL-LKKWKGKSASDDLEKSEDFFDDLL 70 (199)
T ss_dssp EESEE------E-TTTSSEEEEEEEEEEEEEET---EEEEEEEEEEEECCHHHHH-HHHHTTT-HHHHHHT-HHHHHHHH
T ss_pred CCCcc------cCCCCCCCeEEEEEEEeeEEEE---EEEEEEEEEEEChhHhhhH-HHhhhcccCcccccccHHHHHHHh
Confidence 89999 4566678999999999999998 6899999999999999984 4689999987 9999999999999
Q ss_pred ccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhhcCc--c---c-ccc-cccccCc-cCCCCCeEEEEEccCCeEE--
Q 016727 295 REDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKVNH--L---A-YGI-TLVFLQI-SLTHGTFLAYIRQIQTLII-- 364 (384)
Q Consensus 295 ~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk~~~--~---e-Le~-ks~Fk~~-~lpkGs~I~ft~sp~GkLv-- 364 (384)
+++++|++||+++|+ ++.+|+||||.|++.+|+++.+. + + +++ +++|+.. ++|||+.|+|+|+|+|.+.
T Consensus 71 ~~~~~k~iri~~~R~-~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~ 149 (199)
T PF02431_consen 71 DSPVEKAIRIVPVRN-VDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVS 149 (199)
T ss_dssp HSSS-EEEEEEESSS-EEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEE
T ss_pred cCCccEEEEEEEEec-CCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEE
Confidence 999999999999986 99999999999999999988752 2 1 666 9999865 9999999999999988654
Q ss_pred ------------EEEecchhhHHHHHHhh-cc
Q 016727 365 ------------TAWKVLVLTSAKIFHYL-WE 383 (384)
Q Consensus 365 ------------~~IEsk~L~~Alfd~Yl-~~ 383 (384)
++|+|+.||+|+|+.|| |+
T Consensus 150 ~~~~~~~~~~~~g~I~~~~~~~al~~~yL~G~ 181 (199)
T PF02431_consen 150 YNGQGKIPGKELGTIKSPRFARALFDIYLSGD 181 (199)
T ss_dssp EESSSS--SSECEEEE-HHHHHHHHHHHH-ST
T ss_pred EecCCCCCccceeEEcCHHHHHHHHHHHcCCC
Confidence 47889999999999999 86
No 7
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=26.77 E-value=1.2e+02 Score=26.73 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=35.4
Q ss_pred EEEecchhhhhhhCCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHh
Q 016727 259 AFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLE 329 (384)
Q Consensus 259 GvYvD~~alk~~L~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLk 329 (384)
|||+.+-. ..--.+|+|.+.+| |.+--=.+++.--++.+-|.-+ |+++++ .-+++.+..+|.
T Consensus 30 GFfl~eYr--GvsPd~wkgf~~~E---DpE~aik~i~D~s~~AVlI~tV---V~Ee~v-ekie~~~~Ekla 91 (110)
T COG4075 30 GFFLHEYR--GVSPDKWKGFSKEE---DPESAIKAIRDLSDKAVLIGTV---VKEEKV-EKIEELLKEKLA 91 (110)
T ss_pred eEEEEEec--CcChhHhcCccccc---CHHHHHHHHHHhhhceEEEEEe---cCHHHH-HHHHHHHHHHhc
Confidence 67776632 21235788888663 4443222333333455544444 688888 667777777763
No 8
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=12.47 E-value=1.6e+02 Score=26.46 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=16.4
Q ss_pred eeeEEEEEEE--EecchhhhhhhCC
Q 016727 251 KSLKVYAFAF--YVHPRSVCEKLGP 273 (384)
Q Consensus 251 k~IKVYAiGv--YvD~~alk~~L~~ 273 (384)
++|.+|+||+ ++|.+.++. |+.
T Consensus 153 ~~v~i~~iGvG~~~~~~~L~~-iA~ 176 (198)
T cd01470 153 DYLDVYVFGVGDDVNKEELND-LAS 176 (198)
T ss_pred cceeEEEEecCcccCHHHHHH-Hhc
Confidence 3589999999 677777776 654
No 9
>PHA02823 chemokine binding protein; Provisional
Probab=12.23 E-value=2.9e+02 Score=27.38 Aligned_cols=87 Identities=9% Similarity=0.120 Sum_probs=53.5
Q ss_pred ceEEeeeeeeeEEeeeeeeEEEEEEEEecchhhhhhhC--CccCCCChhhhcccchhHHHHhccCcceEEEEEEEecccc
Q 016727 235 EVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLG--PKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMK 312 (384)
Q Consensus 235 l~LvGaGVR~ksI~gik~IKVYAiGvYvD~~alk~~L~--~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs 312 (384)
+..+|-|.+ +.|-+.+=-+|-+|+.|.|-+.+...|+ .-|.+++...+..++.+ + +..+.|..|-|.-...+++
T Consensus 94 ytivgGGL~-~~fgft~Cp~iksise~~~g~tV~arlsS~~Pw~~~~~~sitr~eal--a-l~~~CevsIdiKCs~e~~~ 169 (255)
T PHA02823 94 YTIVGGGLS-MNFGFTKCPTIKSISESADGNTVNARLSSVSPGQGKDSPAITREEAL--A-MIKDCEVSIDIKCSEEEKD 169 (255)
T ss_pred EEEEcCcEE-EEecccCCCceeeeeEecCCCEEEEEeeccCCCCCCCCccccHHHHH--H-HHhhceeeEEEEeeccccc
Confidence 678888876 4444334457889999999988765542 23777766554433222 1 4456666666655443555
Q ss_pred chhHHHHHHHHHHHHH
Q 016727 313 VNAVKDVFEKSLRARL 328 (384)
Q Consensus 313 ~n~vrdAfeeSLg~RL 328 (384)
.+.. .. -+|++|+
T Consensus 170 ~~~k--t~-~~L~p~i 182 (255)
T PHA02823 170 STIK--TH-PVLGSNI 182 (255)
T ss_pred cccc--cc-ccccccc
Confidence 5554 33 6788888
No 10
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=10.99 E-value=4.6e+02 Score=23.30 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=30.8
Q ss_pred EEEecchh-hhhhhCCccCCCChhhhcccchhHHHHhccCcceEEEEEEEeccccchhHHHHHHHHHHHHHhh
Q 016727 259 AFYVHPRS-VCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEK 330 (384)
Q Consensus 259 GvYvD~~a-lk~~L~~Kwkgksa~EL~~~~dFf~dLl~~~~ektvRLVivyskVs~n~vrdAfeeSLg~RLkk 330 (384)
|||+.+-. ++ -.+|+|.+-+ +|.+.-=.+++.--+-+ |++-.-|+++++ +.+++.+..||+.
T Consensus 30 GFyl~eYkGmS---P~~wkgf~l~---EDpe~ai~~I~d~s~~a---V~I~TVV~~~~~-~~i~~~i~ekL~~ 92 (110)
T PF10126_consen 30 GFYLHEYKGMS---PQDWKGFLLD---EDPEMAIKAINDLSENA---VLIGTVVDEEKV-EKIEKLIKEKLKN 92 (110)
T ss_pred EEEeEeecCCC---hHHhcCcccc---cCHHHHHHHHHHhccCc---EEEEEEECHHHH-HHHHHHHHHHhcC
Confidence 67766532 11 1356665433 34443223333222222 232223566766 6788888888854
Done!