Query 016728
Match_columns 384
No_of_seqs 321 out of 1631
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1312 DHHC-type Zn-finger pr 100.0 6.4E-61 1.4E-65 440.8 11.7 282 1-295 1-289 (341)
2 KOG1311 DHHC-type Zn-finger pr 100.0 5.9E-40 1.3E-44 318.4 16.7 169 118-295 61-240 (299)
3 KOG1315 Predicted DHHC-type Zn 100.0 2.6E-40 5.6E-45 316.1 13.8 209 78-300 13-236 (307)
4 KOG1314 DHHC-type Zn-finger pr 100.0 7.7E-39 1.7E-43 302.1 12.5 184 102-294 39-224 (414)
5 PF01529 zf-DHHC: DHHC palmito 100.0 6E-39 1.3E-43 287.0 10.9 161 125-297 2-174 (174)
6 COG5273 Uncharacterized protei 100.0 2.1E-34 4.5E-39 278.9 14.4 172 114-299 60-235 (309)
7 KOG1313 DHHC-type Zn-finger pr 100.0 5.9E-34 1.3E-38 261.5 10.1 137 159-295 102-244 (309)
8 KOG0509 Ankyrin repeat and DHH 99.9 5.2E-28 1.1E-32 244.9 9.6 109 118-226 376-487 (600)
9 KOG0509 Ankyrin repeat and DHH 88.8 0.49 1.1E-05 49.7 4.2 86 125-212 292-377 (600)
10 PF01529 zf-DHHC: DHHC palmito 87.2 5 0.00011 35.2 9.3 54 159-223 62-115 (174)
11 PRK04136 rpl40e 50S ribosomal 82.4 0.79 1.7E-05 31.9 1.4 24 158-181 13-36 (48)
12 KOG1311 DHHC-type Zn-finger pr 82.3 6.1 0.00013 38.3 8.2 41 173-213 113-164 (299)
13 COG5273 Uncharacterized protei 81.7 13 0.00028 36.5 10.2 168 110-295 59-243 (309)
14 PF13240 zinc_ribbon_2: zinc-r 78.9 1.2 2.7E-05 26.1 1.3 21 161-181 1-21 (23)
15 PF13248 zf-ribbon_3: zinc-rib 74.7 1.9 4.1E-05 26.0 1.3 23 159-181 2-24 (26)
16 PF06906 DUF1272: Protein of u 62.4 4.3 9.3E-05 29.3 1.2 37 160-199 6-50 (57)
17 PF10571 UPF0547: Uncharacteri 60.7 5.6 0.00012 24.1 1.3 22 160-181 1-22 (26)
18 PTZ00303 phosphatidylinositol 59.7 5 0.00011 43.5 1.6 22 160-181 461-489 (1374)
19 COG1552 RPL40A Ribosomal prote 59.6 2 4.4E-05 30.0 -0.8 25 157-181 12-36 (50)
20 KOG1312 DHHC-type Zn-finger pr 55.5 23 0.00049 34.3 5.1 31 173-203 148-178 (341)
21 PF01020 Ribosomal_L40e: Ribos 52.4 6.3 0.00014 27.9 0.7 24 159-182 17-42 (52)
22 KOG3183 Predicted Zn-finger pr 50.2 7 0.00015 36.6 0.8 13 182-194 37-49 (250)
23 PF00641 zf-RanBP: Zn-finger i 46.8 6.4 0.00014 24.3 -0.0 21 161-181 6-26 (30)
24 PF12773 DZR: Double zinc ribb 46.5 15 0.00032 25.4 1.8 32 160-191 13-47 (50)
25 PF12773 DZR: Double zinc ribb 42.8 18 0.00039 24.9 1.8 22 159-180 29-50 (50)
26 COG3936 Protein involved in po 33.2 87 0.0019 30.3 5.2 40 21-71 176-216 (349)
27 PF01363 FYVE: FYVE zinc finge 32.4 14 0.0003 27.3 -0.2 25 160-184 10-36 (69)
28 PF10112 Halogen_Hydrol: 5-bro 32.3 3.7E+02 0.0081 24.1 10.9 14 203-216 2-15 (199)
29 PF08600 Rsm1: Rsm1-like; Int 31.8 25 0.00053 28.0 1.2 12 188-199 56-67 (91)
30 smart00547 ZnF_RBZ Zinc finger 30.1 29 0.00062 20.4 1.0 21 161-181 4-24 (26)
31 COG2093 DNA-directed RNA polym 30.0 29 0.00064 25.6 1.2 23 159-181 4-26 (64)
32 PRK00944 hypothetical protein; 28.3 75 0.0016 28.7 3.7 31 4-34 15-45 (195)
33 cd01995 ExsB ExsB is a transcr 26.8 25 0.00053 30.7 0.4 23 161-186 142-164 (169)
34 KOG1710 MYND Zn-finger and ank 26.6 27 0.00058 33.9 0.6 20 159-180 319-338 (396)
35 PF07649 C1_3: C1-like domain; 26.3 26 0.00056 21.6 0.3 21 161-181 2-23 (30)
36 PRK04561 tatA twin arginine tr 25.5 57 0.0012 25.1 2.1 14 14-27 11-24 (75)
37 PRK03554 tatA twin arginine tr 25.4 53 0.0012 26.1 2.0 15 12-26 9-23 (89)
38 PRK04598 tatA twin arginine tr 24.9 55 0.0012 25.6 2.0 14 13-26 10-23 (81)
39 PRK02958 tatA twin arginine tr 24.7 58 0.0013 24.9 2.0 14 14-27 11-24 (73)
40 smart00064 FYVE Protein presen 24.7 34 0.00073 25.1 0.7 24 160-183 11-36 (68)
41 PRK01833 tatA twin arginine tr 23.9 62 0.0013 24.8 2.0 13 14-26 11-23 (74)
42 KOG1315 Predicted DHHC-type Zn 23.8 35 0.00077 33.4 0.9 32 172-203 108-139 (307)
43 KOG1842 FYVE finger-containing 23.8 23 0.00051 36.1 -0.4 25 159-183 180-206 (505)
44 PRK00720 tatA twin arginine tr 23.6 62 0.0014 25.1 2.0 13 13-25 10-22 (78)
45 KOG1819 FYVE finger-containing 23.4 27 0.00058 36.2 0.0 22 160-181 902-925 (990)
46 PRK01614 tatE twin arginine tr 23.3 62 0.0014 25.4 2.0 13 14-26 11-23 (85)
47 PF07423 DUF1510: Protein of u 21.8 77 0.0017 29.5 2.7 6 353-358 143-148 (217)
48 KOG1398 Uncharacterized conser 21.1 27 0.00058 35.1 -0.5 26 169-200 10-35 (460)
49 PLN00186 ribosomal protein S26 20.8 40 0.00086 27.7 0.5 20 171-190 18-37 (109)
50 PF12273 RCR: Chitin synthesis 20.6 62 0.0013 27.2 1.7 9 5-13 2-10 (130)
51 PRK03625 tatE twin arginine tr 20.6 76 0.0017 23.8 1.9 16 13-28 10-25 (67)
52 TIGR00155 pqiA_fam integral me 20.6 1.3E+02 0.0029 30.6 4.3 31 160-190 216-247 (403)
53 PRK15033 tricarballylate utili 20.2 3.3E+02 0.0072 27.6 6.9 14 175-192 68-81 (389)
No 1
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=6.4e-61 Score=440.81 Aligned_cols=282 Identities=39% Similarity=0.610 Sum_probs=230.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCCccCChhhHHHHHHHhhhhhhhhhhhccccccchhhhhhhhcceeeccCCcch
Q 016728 1 MDVQWLLIIHGLLTLLVVVSFLCGQWPIFEGTPIQRIHYFLTFGAYDYFLRFVGSVFGEKAINAILSVEYFCCDRPNPVL 80 (384)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~lfG~~p~~r~t~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~ 80 (384)
||++|++++|+..++++|+++|||+.|.|++||+ |.|+++..++|+++.+.|++.+ .+...++++.+||.+
T Consensus 1 Mdf~wllLf~lai~l~vVlilLcgq~p~lKgt~~-w~~~ff~~~ip~~llr~v~~y~--------~sl~~~~l~~tni~L 71 (341)
T KOG1312|consen 1 MDFLWLLLFYLAIVLGVVLILLCGQTPSLKGTAR-WGAQFFSCIIPECLLRAVHGYL--------RSLLFHTLNHTNIVL 71 (341)
T ss_pred CchhHHHHHHHHHHHHHhhhhhcCCCcccccccc-cceeeEEECccHHHHHHHHHHH--------HHheeeeccCCChhH
Confidence 9999999999999999999999999999999999 9999999999999999887554 456788999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCcccccccCCCCCccccc-
Q 016728 81 QIIYLAIIGITYYFIAKSSFSYIPGYYLSGFHRYTSLLGVGIGVFFFLLTSFADPGTVKAENVSQYQSAYPYDNIIYTE- 159 (384)
Q Consensus 81 ~i~~l~l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~a~~~DPG~i~~~~~~~~~~~~p~d~~~~~~- 159 (384)
+++|..++.. ...++.+-+.|++++|..+++....+++++.+++.+++.+|||.++++|..+..+.||||.+++.+
T Consensus 72 ~lvy~a~m~~---~~~~esfiy~~~l~lsl~~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYDy~if~k~ 148 (341)
T KOG1312|consen 72 HLVYQAMMYT---EYTWESFIYCQELELSLHYLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHVYPYDYVIFPKN 148 (341)
T ss_pred HHHHHHHHhh---hhhheeeEeccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceeccCccceeecCC
Confidence 9999988764 334455667788889999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCCCCCCcccccCCccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchheee
Q 016728 160 KECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFV-LAGRLKELRVVY 238 (384)
Q Consensus 160 ~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~-l~~~~~~~~~~~ 238 (384)
+.|+||+++||+||||||+|||||+||||||.|+|||||++|+|||++||+++..++.|++..++++ +....+..+...
T Consensus 149 ~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ 228 (341)
T KOG1312|consen 149 VKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVY 228 (341)
T ss_pred CccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchhee
Confidence 8999999999999999999999999999999999999999999999999999999999999888877 555555555555
Q ss_pred eeeeecccccccccchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 016728 239 ILTVYYGIENSFRKLAPHVVQIL-----LMVFLAVVSLLLASFFGYHANLCRTNTTTNETVK 295 (384)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~-----~~i~~~~~~~~l~~f~~~h~~li~~n~TT~E~~k 295 (384)
..+.+.+...+...+.+.+++.+ ..-+.... -++++...+-.|+.++|+||+|...
T Consensus 229 ilt~~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~-~~~~~Y~~f~~y~~~t~~~~~~W~~ 289 (341)
T KOG1312|consen 229 ILTLGHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVL-SFLGGYLLFVLYLAATNQTTNEWYR 289 (341)
T ss_pred eeeeeecchhhHHHHHHHHHHHhccceeeeehhhhh-hHhHHHHHHHHHHHhccCCchhhhc
Confidence 55555554444333333322210 00011111 1244555566677777777776543
No 2
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=5.9e-40 Score=318.39 Aligned_cols=169 Identities=34% Similarity=0.620 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhcc---CCCcccCCC--ccccccc------CCCCCccccccccccCCCCCCCCCcccccCCcccccc
Q 016728 118 LGVGIGVFFFLLTSFA---DPGTVKAEN--VSQYQSA------YPYDNIIYTEKECSTCKIPKPARSKHCSICNRCVARF 186 (384)
Q Consensus 118 ~~~~l~~~~~~~a~~~---DPG~i~~~~--~~~~~~~------~p~d~~~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r~ 186 (384)
+...+.+..+..++++ |||.+|++. ..+..+. .+.++...+.++|.+|+..||+|||||++||+||+||
T Consensus 61 if~~~~~~~~~~~~~~~~sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rf 140 (299)
T KOG1311|consen 61 IFFLLNILNLMLACFRMLSDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRF 140 (299)
T ss_pred HHHHHHHHHHHHHHhcccCCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhccccccc
Confidence 3334444455555555 999999852 1111101 1123334457999999999999999999999999999
Q ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchheeeeeeeecccccccccchhHHHHHHHHHHH
Q 016728 187 DHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFVLAGRLKELRVVYILTVYYGIENSFRKLAPHVVQILLMVFL 266 (384)
Q Consensus 187 DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 266 (384)
||||||+|||||++|||||+.|+++.++.++|.+......+.....+...... ...........+++.++.
T Consensus 141 DHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~ 211 (299)
T KOG1311|consen 141 DHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNLT---------PVLIPAGTFLSALLGLLS 211 (299)
T ss_pred CCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---------ccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999998888776655433222111000 000001111223344445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccc
Q 016728 267 AVVSLLLASFFGYHANLCRTNTTTNETVK 295 (384)
Q Consensus 267 ~~~~~~l~~f~~~h~~li~~n~TT~E~~k 295 (384)
++....+++++.+|++++.+|+||+|.++
T Consensus 212 ~~~~~~~~~l~~fh~~li~~~~Tt~e~~~ 240 (299)
T KOG1311|consen 212 ALFLAFTSALLCFHIYLIKSGSTTYESIK 240 (299)
T ss_pred HHHHHHHHHHHHhheeeEecCcchhhhhh
Confidence 56666777899999999999999998655
No 3
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=316.15 Aligned_cols=209 Identities=27% Similarity=0.414 Sum_probs=144.5
Q ss_pred cchhhhhhhhhhhhhhhhhhhhc-ccccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCcccccc-cCCC---
Q 016728 78 PVLQIIYLAIIGITYYFIAKSSF-SYIPGYYLSGFHRYTSLLGVGIGVFFFLLTSFADPGTVKAENVSQYQS-AYPY--- 152 (384)
Q Consensus 78 p~~~i~~l~l~~~~~~~f~~~~~-~~~p~~~~~~~~~~~~~~~~~l~~~~~~~a~~~DPG~i~~~~~~~~~~-~~p~--- 152 (384)
++.+++.+.+++.+|++++...- ..+-....+.+..+....++++...+|+.++++|||.+|.+...+..+ ..+.
T Consensus 13 ~~~~~~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~ 92 (307)
T KOG1315|consen 13 WIPVLIILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGS 92 (307)
T ss_pred chhheeeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccC
Confidence 55566677777888888764431 111111123444455556677778899999999999999643221111 0111
Q ss_pred ----CC------ccccccccccCCCCCCCCCcccccCCccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 016728 153 ----DN------IIYTEKECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVA 222 (384)
Q Consensus 153 ----d~------~~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~ 222 (384)
+. .....|+|.+|+.+||+||||||+|+|||+||||||||+|||||.+|||+|++|++|+.+.+.|.++.
T Consensus 93 ~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~ 172 (307)
T KOG1315|consen 93 DNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVT 172 (307)
T ss_pred cccccceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHH
Confidence 11 11245899999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHhhhchheeeeeeeecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchhh
Q 016728 223 LGFVLAGRLKELRVVYILTVYYGIENSFRKLAPHVVQILLMVFLAVVSLLLASFFGYHANLCRTNTTTNETVKWQDHM 300 (384)
Q Consensus 223 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~f~~~h~~li~~n~TT~E~~k~~~~~ 300 (384)
....+.....+.... . .......+++.++...+++.+++|+++|++||++|+||+|.+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~ 236 (307)
T KOG1315|consen 173 TLIGFTKYFQGGAGP----------S----SLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFR 236 (307)
T ss_pred HHHHHHHHHhccccC----------c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcccccc
Confidence 655443322110000 0 000111133344455677777889999999999999999999987654
No 4
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=7.7e-39 Score=302.06 Aligned_cols=184 Identities=27% Similarity=0.442 Sum_probs=131.7
Q ss_pred cccc-cchhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCcccccccCCCCCccccccccccCCCCCCCCCcccccCC
Q 016728 102 YIPG-YYLSGFHRYTSLLGVGIGVFFFLLTSFADPGTVKAENVSQYQSAYPYDNIIYTEKECSTCKIPKPARSKHCSICN 180 (384)
Q Consensus 102 ~~p~-~~~~~~~~~~~~~~~~l~~~~~~~a~~~DPG~i~~~~~~~~~~~~p~d~~~~~~~~C~tC~~~kP~RSkHC~~C~ 180 (384)
+.|. .+.+..+.++..+...+.+.+|+.|++++||++|....++ .|.|.+ -.++|..|+.+||||||||+.||
T Consensus 39 w~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe----~~~D~~--~lqfCk~CqgYKapRSHHCrkCn 112 (414)
T KOG1314|consen 39 WFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPE----NPKDEM--FLQFCKKCQGYKAPRSHHCRKCN 112 (414)
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC----CChhHH--HHHHHhhccCcCCCccccchHHH
Confidence 4453 3467788888888888889999999999999999876654 344532 24899999999999999999999
Q ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchheeeeeeeeccc-ccccccchhHHHH
Q 016728 181 RCVARFDHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFVLAGRLKELRVVYILTVYYGI-ENSFRKLAPHVVQ 259 (384)
Q Consensus 181 rCV~r~DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (384)
|||.+|||||||+|||||..||.||+.||++..+.|+-+.++....++..+........- .+. +.-+......++.
T Consensus 113 rCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g---~~hlp~v~ft~~~li~~ 189 (414)
T KOG1314|consen 113 RCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYG---LRHLPIVFFTLSSLIAL 189 (414)
T ss_pred HHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcc---cccCceeeccHHHHHHH
Confidence 999999999999999999999999999999999999888777666555444332211000 000 0000000011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 016728 260 ILLMVFLAVVSLLLASFFGYHANLCRTNTTTNETV 294 (384)
Q Consensus 260 i~~~i~~~~~~~~l~~f~~~h~~li~~n~TT~E~~ 294 (384)
++.+.+...+.+.+..++..|+..|.+|+|.+|+.
T Consensus 190 vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~w 224 (414)
T KOG1314|consen 190 VFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESW 224 (414)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 11111223345566778899999999999999963
No 5
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=6e-39 Score=286.99 Aligned_cols=161 Identities=37% Similarity=0.682 Sum_probs=119.1
Q ss_pred HHHHHHhccCCCcccCCCcccc------------cccCCCCCccccccccccCCCCCCCCCcccccCCcccccccccccc
Q 016728 125 FFFLLTSFADPGTVKAENVSQY------------QSAYPYDNIIYTEKECSTCKIPKPARSKHCSICNRCVARFDHHCGW 192 (384)
Q Consensus 125 ~~~~~a~~~DPG~i~~~~~~~~------------~~~~p~d~~~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~W 192 (384)
++|++++++|||++|+.+.++. ....+.++.....++|.+|+..||+|||||+.||+||.||||||+|
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w 81 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW 81 (174)
T ss_pred EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence 3578899999999998711100 0111223344566999999999999999999999999999999999
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchheeeeeeeecccccccccchhHHHHHHHHHHHHHHHHH
Q 016728 193 MNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFVLAGRLKELRVVYILTVYYGIENSFRKLAPHVVQILLMVFLAVVSLL 272 (384)
Q Consensus 193 innCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 272 (384)
+|||||++|||+|++|+++..+.+++.++.....+........... +.. ......++++++.++.+++
T Consensus 82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~ 149 (174)
T PF01529_consen 82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSS-----------FWI-FSNFSSIFLLIISIFFFIF 149 (174)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------ccc-chhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888876665544333221110 000 0000013444555667778
Q ss_pred HHHHHHHHHHHHhcCcccccccccc
Q 016728 273 LASFFGYHANLCRTNTTTNETVKWQ 297 (384)
Q Consensus 273 l~~f~~~h~~li~~n~TT~E~~k~~ 297 (384)
++.++++|++++++|+||+|.+||+
T Consensus 150 ~~~l~~~~~~~i~~n~Tt~E~~~~~ 174 (174)
T PF01529_consen 150 VGFLLIFQLYLILRNITTYERIKRK 174 (174)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHcC
Confidence 8899999999999999999998874
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=278.88 Aligned_cols=172 Identities=33% Similarity=0.536 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCcc----cccccCCCCCccccccccccCCCCCCCCCcccccCCccccccccc
Q 016728 114 YTSLLGVGIGVFFFLLTSFADPGTVKAENVS----QYQSAYPYDNIIYTEKECSTCKIPKPARSKHCSICNRCVARFDHH 189 (384)
Q Consensus 114 ~~~~~~~~l~~~~~~~a~~~DPG~i~~~~~~----~~~~~~p~d~~~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r~DHH 189 (384)
+...++..+...++++.+++|||+.+.++.. +..+....++....+++|.+|+.+||+|||||+.|||||+|||||
T Consensus 60 i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHH 139 (309)
T COG5273 60 ILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHH 139 (309)
T ss_pred hhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhhccCcc
Confidence 3444555566778999999999999854321 112222223444577999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchheeeeeeeecccccccccchhHHHHHHHHHHHHHH
Q 016728 190 CGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFVLAGRLKELRVVYILTVYYGIENSFRKLAPHVVQILLMVFLAVV 269 (384)
Q Consensus 190 C~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 269 (384)
|||+|||||.+|||+|++||+++....++.++.....+......... ... +-......+..+...+
T Consensus 140 C~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~li~~~~~~~~~~ 205 (309)
T COG5273 140 CPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHD-----------TSL---AICFLIFGCSLLGVVF 205 (309)
T ss_pred CcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------hHH---HHHHHHHhhhHHHHHH
Confidence 99999999999999999999999877777766665554432211110 000 0000001112233345
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccchh
Q 016728 270 SLLLASFFGYHANLCRTNTTTNETVKWQDH 299 (384)
Q Consensus 270 ~~~l~~f~~~h~~li~~n~TT~E~~k~~~~ 299 (384)
.+.+..++.+|.+++..|.||.|..+..+.
T Consensus 206 f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~ 235 (309)
T COG5273 206 FIITTLLLLFLIYLILNNLTTIEFIQISRG 235 (309)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 566678899999999999999998766553
No 7
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=261.50 Aligned_cols=137 Identities=28% Similarity=0.577 Sum_probs=97.8
Q ss_pred ccccccCCCCCCCCCcccccCCccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchheee
Q 016728 159 EKECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFVLAGRLKELRVVY 238 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~l~~~~~~~~~~~ 238 (384)
..+|.+|+-+||||+||||+|||||++|||||||+|||||.+|||||++|++++++.+.|..+...+.....++......
T Consensus 102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t 181 (309)
T KOG1313|consen 102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT 181 (309)
T ss_pred ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 46999999999999999999999999999999999999999999999999999999999988886655544443222111
Q ss_pred eeeee---cccccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 016728 239 ILTVY---YGIENSFRKL---APHVVQILLMVFLAVVSLLLASFFGYHANLCRTNTTTNETVK 295 (384)
Q Consensus 239 ~~~~~---~~~~~~~~~~---~~~~~~i~~~i~~~~~~~~l~~f~~~h~~li~~n~TT~E~~k 295 (384)
..... ...+.++... ........+.+.++.+.++++.+..+|.++|.+|.|.+|..+
T Consensus 182 ay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~ 244 (309)
T KOG1313|consen 182 AYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLI 244 (309)
T ss_pred cccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHH
Confidence 11000 0000111100 011111223344455667788899999999999999999654
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=5.2e-28 Score=244.88 Aligned_cols=109 Identities=39% Similarity=0.648 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhccCCCcccCCCcccc--cccCCCCCccccc-cccccCCCCCCCCCcccccCCcccccccccccccc
Q 016728 118 LGVGIGVFFFLLTSFADPGTVKAENVSQY--QSAYPYDNIIYTE-KECSTCKIPKPARSKHCSICNRCVARFDHHCGWMN 194 (384)
Q Consensus 118 ~~~~l~~~~~~~a~~~DPG~i~~~~~~~~--~~~~p~d~~~~~~-~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~Win 194 (384)
+.++..++.+.+...+|||+++....... ....+.-+....+ ++|.+|.++||.|||||++|||||+||||||||++
T Consensus 376 ~~~l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ 455 (600)
T KOG0509|consen 376 ISVLAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIG 455 (600)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccc
Confidence 33344445566666799999987542221 1111111112234 69999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016728 195 NCIGERNTRYFMAFLLWHLFLCLYGIVALGFV 226 (384)
Q Consensus 195 nCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~ 226 (384)
||||.+|||+|+.|++.....+.+.++.....
T Consensus 456 ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y 487 (600)
T KOG0509|consen 456 NCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYY 487 (600)
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887776665554433
No 9
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=88.78 E-value=0.49 Score=49.71 Aligned_cols=86 Identities=15% Similarity=-0.053 Sum_probs=62.0
Q ss_pred HHHHHHhccCCCcccCCCcccccccCCCCCccccccccccCCCCCCCCCcccccCCccccccccccccccccccccchhh
Q 016728 125 FFFLLTSFADPGTVKAENVSQYQSAYPYDNIIYTEKECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRY 204 (384)
Q Consensus 125 ~~~~~a~~~DPG~i~~~~~~~~~~~~p~d~~~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~WinnCVG~~N~r~ 204 (384)
..++..+.-+||++-.-+....... +--....-...|.+|....+.+..+|..|-.++..+++||+|+. ||+.+|-..
T Consensus 292 ~~~~~~~~~~~g~i~~~~~~w~i~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~ 369 (600)
T KOG0509|consen 292 GLFYFISSWLPGVIFLINSLWLIKG-LALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFD 369 (600)
T ss_pred HHHHHHHhhccchhhhhhhHHHHhh-hhhhhhhhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhh
Confidence 3345566789999876553111111 11111234578999999999999999999999999999999999 999999877
Q ss_pred HHHHHHHH
Q 016728 205 FMAFLLWH 212 (384)
Q Consensus 205 FllfL~~~ 212 (384)
|-...+..
T Consensus 370 ~~~~~i~~ 377 (600)
T KOG0509|consen 370 FHYCFIIS 377 (600)
T ss_pred hHHHHHHH
Confidence 65544433
No 10
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=87.17 E-value=5 Score=35.21 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=39.0
Q ss_pred ccccccCCCCCCCCCcccccCCccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 016728 159 EKECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVAL 223 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~C~rCV~r~DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~ 223 (384)
.+.|+.|+.-...+-|||..-|.||.+--| +.+=.|+++.....+...+..+..
T Consensus 62 s~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~ 115 (174)
T PF01529_consen 62 SHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLYY 115 (174)
T ss_pred ceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888889999999999888766 445577777666555555544433
No 11
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=82.37 E-value=0.79 Score=31.88 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=21.8
Q ss_pred cccccccCCCCCCCCCcccccCCc
Q 016728 158 TEKECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 158 ~~~~C~tC~~~kP~RSkHC~~C~r 181 (384)
..+.|..|...-|+|+..|+.||.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 457999999999999999998886
No 12
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=82.27 E-value=6.1 Score=38.26 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=35.4
Q ss_pred CcccccCCccccccccccccccccccccchh-----------hHHHHHHHHH
Q 016728 173 SKHCSICNRCVARFDHHCGWMNNCIGERNTR-----------YFMAFLLWHL 213 (384)
Q Consensus 173 SkHC~~C~rCV~r~DHHC~WinnCVG~~N~r-----------~FllfL~~~~ 213 (384)
-|+|..|+..+.+.-|||..=|+||-+.-|+ -.-.|+.+.+
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 7999999999999999999999999999874 4667775444
No 13
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=81.68 E-value=13 Score=36.47 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCccc-----CCCcccccccCCCCCcc----------ccccccccCCCCCCCCCc
Q 016728 110 GFHRYTSLLGVGIGVFFFLLTSFADPGTVK-----AENVSQYQSAYPYDNII----------YTEKECSTCKIPKPARSK 174 (384)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~a~~~DPG~i~-----~~~~~~~~~~~p~d~~~----------~~~~~C~tC~~~kP~RSk 174 (384)
....+....+....++....+.-.-||.-. ++..++..+..+++... .+.+.|++|+.--...-|
T Consensus 59 ~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DH 138 (309)
T COG5273 59 IILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDH 138 (309)
T ss_pred hhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhhccCc
Confidence 334445555555566666666666666321 12223333333332221 134799999999999999
Q ss_pred ccccCCccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhee-eeeeeecccccccccc
Q 016728 175 HCSICNRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHLFLCLYGIVALGFVLAGRLKELRVV-YILTVYYGIENSFRKL 253 (384)
Q Consensus 175 HC~~C~rCV~r~DHHC~WinnCVG~~N~r~FllfL~~~~i~~~y~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 253 (384)
||..=|+||.+-.| +=.-.|++++....+..++..........+.-.+.... .... .+ . ..
T Consensus 139 HC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~----~-~~ 200 (309)
T COG5273 139 HCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLI--FG----C-SL 200 (309)
T ss_pred cCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH--Hh----h-hH
Confidence 99999999998766 66778888886655544444333333222111111111 1000 00 0 00
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 016728 254 APH-VVQILLMVFLAVVSLLLASFFGYHANLCRTNTTTNETVK 295 (384)
Q Consensus 254 ~~~-~~~i~~~i~~~~~~~~l~~f~~~h~~li~~n~TT~E~~k 295 (384)
... .+.++...+......++...+.++.+.+.++.++-|...
T Consensus 201 ~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~ 243 (309)
T COG5273 201 LGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFP 243 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccc
Confidence 000 011112222223344455667788888899999888654
No 14
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=78.91 E-value=1.2 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=18.8
Q ss_pred ccccCCCCCCCCCcccccCCc
Q 016728 161 ECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 161 ~C~tC~~~kP~RSkHC~~C~r 181 (384)
+|+.|...-++.++.|+.||.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 589999999999999999985
No 15
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=74.66 E-value=1.9 Score=25.98 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=19.8
Q ss_pred ccccccCCCCCCCCCcccccCCc
Q 016728 159 EKECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~C~r 181 (384)
++.|+.|...-++-++.|+.||.
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred cCCCcccCCcCCcccccChhhCC
Confidence 36899999988999999999885
No 16
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=62.44 E-value=4.3 Score=29.27 Aligned_cols=37 Identities=32% Similarity=0.838 Sum_probs=29.9
Q ss_pred cccccCCCCCCCCC-------cccccCCcccccc-ccccccccccccc
Q 016728 160 KECSTCKIPKPARS-------KHCSICNRCVARF-DHHCGWMNNCIGE 199 (384)
Q Consensus 160 ~~C~tC~~~kP~RS-------kHC~~C~rCV~r~-DHHC~WinnCVG~ 199 (384)
..|..|+..-|+-| .-|..|..|+..+ +++|| ||=|+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 35888888777765 5588999999988 99998 78775
No 17
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.72 E-value=5.6 Score=24.11 Aligned_cols=22 Identities=32% Similarity=0.813 Sum_probs=19.1
Q ss_pred cccccCCCCCCCCCcccccCCc
Q 016728 160 KECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 160 ~~C~tC~~~kP~RSkHC~~C~r 181 (384)
+.|+.|...-|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4699999999999999998874
No 18
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=59.67 E-value=5 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.735 Sum_probs=18.4
Q ss_pred cccccCCCCCC-------CCCcccccCCc
Q 016728 160 KECSTCKIPKP-------ARSKHCSICNR 181 (384)
Q Consensus 160 ~~C~tC~~~kP-------~RSkHC~~C~r 181 (384)
+.|..|+..-. -|-|||+.||+
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 46999998875 39999999987
No 19
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=59.60 E-value=2 Score=29.95 Aligned_cols=25 Identities=28% Similarity=0.808 Sum_probs=21.8
Q ss_pred ccccccccCCCCCCCCCcccccCCc
Q 016728 157 YTEKECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 157 ~~~~~C~tC~~~kP~RSkHC~~C~r 181 (384)
+..+.|..|...-|+|+.-|+.|+.
T Consensus 12 ~~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 12 FNKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hhHHHHHHhcCCCCcchhHHhhccC
Confidence 4457999999999999999998864
No 20
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=55.46 E-value=23 Score=34.26 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=26.5
Q ss_pred CcccccCCccccccccccccccccccccchh
Q 016728 173 SKHCSICNRCVARFDHHCGWMNNCIGERNTR 203 (384)
Q Consensus 173 SkHC~~C~rCV~r~DHHC~WinnCVG~~N~r 203 (384)
.+-||.|+-=-.-...||.-=|-||-+-.|+
T Consensus 148 ~~kCSTCki~KPARSKHCsiCNrCV~rfDHH 178 (341)
T KOG1312|consen 148 NVKCSTCKIRKPARSKHCSICNRCVHRFDHH 178 (341)
T ss_pred CCccccccCCCccccccchHHHHHHHHhccc
Confidence 4679999887788889999999999988775
No 21
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=52.44 E-value=6.3 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.707 Sum_probs=16.5
Q ss_pred ccccccCCCCCCCCCccccc--CCcc
Q 016728 159 EKECSTCKIPKPARSKHCSI--CNRC 182 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~--C~rC 182 (384)
...|..|...-|+|+..|+. ||++
T Consensus 17 k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 17 KMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp -EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred ceecccccCcCCCCccceecccCCCC
Confidence 46899999999999999998 8765
No 22
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=50.23 E-value=7 Score=36.55 Aligned_cols=13 Identities=23% Similarity=0.118 Sum_probs=10.4
Q ss_pred ccccccccccccc
Q 016728 182 CVARFDHHCGWMN 194 (384)
Q Consensus 182 CV~r~DHHC~Win 194 (384)
=..+.+|||||..
T Consensus 37 Hrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 37 HRSYESHHCPKGL 49 (250)
T ss_pred cchHhhcCCCccc
Confidence 3578899999974
No 23
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=46.83 E-value=6.4 Score=24.32 Aligned_cols=21 Identities=29% Similarity=0.903 Sum_probs=15.0
Q ss_pred ccccCCCCCCCCCcccccCCc
Q 016728 161 ECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 161 ~C~tC~~~kP~RSkHC~~C~r 181 (384)
.|.+|...-++++.+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 588888888888888888863
No 24
>PF12773 DZR: Double zinc ribbon
Probab=46.51 E-value=15 Score=25.38 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=19.4
Q ss_pred cccccCCCCCC---CCCcccccCCccccccccccc
Q 016728 160 KECSTCKIPKP---ARSKHCSICNRCVARFDHHCG 191 (384)
Q Consensus 160 ~~C~tC~~~kP---~RSkHC~~C~rCV~r~DHHC~ 191 (384)
++|..|...-+ ...+.|..|+.=+...+.+|+
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~ 47 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCP 47 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCcCCcCccC
Confidence 56666666555 234566666666666666665
No 25
>PF12773 DZR: Double zinc ribbon
Probab=42.78 E-value=18 Score=24.89 Aligned_cols=22 Identities=32% Similarity=0.869 Sum_probs=20.1
Q ss_pred ccccccCCCCCCCCCcccccCC
Q 016728 159 EKECSTCKIPKPARSKHCSICN 180 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~C~ 180 (384)
..+|..|....++.++.|..||
T Consensus 29 ~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 29 KKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCcCCcCCCcCCcCccCccc
Confidence 4689999999999999999986
No 26
>COG3936 Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]
Probab=33.16 E-value=87 Score=30.33 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=19.6
Q ss_pred HHhcCCCCccCChh-hHHHHHHHhhhhhhhhhhhccccccchhhhhhhhcce
Q 016728 21 FLCGQWPIFEGTPI-QRIHYFLTFGAYDYFLRFVGSVFGEKAINAILSVEYF 71 (384)
Q Consensus 21 ~lfG~~p~~r~t~i-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (384)
.++|--|.|.++|+ ||+..+. .+.-+|...+|...-.++|
T Consensus 176 ~~~~~fp~f~~~if~GW~fyF~-----------Lg~Y~g~nY~r~l~fLeky 216 (349)
T COG3936 176 LLFLTFPYFFAMIFMGWYFYFP-----------LGVYAGINYDRLLKFLEKY 216 (349)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH-----------HHHHHhhhHHHHHHHHHHH
Confidence 34555566666654 4444432 2234554445554444544
No 27
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.45 E-value=14 Score=27.32 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=12.5
Q ss_pred cccccCCCC--CCCCCcccccCCcccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCVA 184 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV~ 184 (384)
..|..|+.. --.|-|||+.||+.|=
T Consensus 10 ~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 10 SNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 567777543 2468899999998653
No 28
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.31 E-value=3.7e+02 Score=24.11 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHH
Q 016728 203 RYFMAFLLWHLFLC 216 (384)
Q Consensus 203 r~FllfL~~~~i~~ 216 (384)
|+|+.|+++..+..
T Consensus 2 ~~~~~~~~~~~~~~ 15 (199)
T PF10112_consen 2 KYIIRFIFRWILGV 15 (199)
T ss_pred chHHHHHHHHHHHH
Confidence 56777776655443
No 29
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=31.80 E-value=25 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.2
Q ss_pred cccccccccccc
Q 016728 188 HHCGWMNNCIGE 199 (384)
Q Consensus 188 HHC~WinnCVG~ 199 (384)
.||||+|.-...
T Consensus 56 ~~CPwv~~~~q~ 67 (91)
T PF08600_consen 56 EYCPWVNPSTQS 67 (91)
T ss_pred ccCCccCCcccc
Confidence 689999976543
No 30
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=30.07 E-value=29 Score=20.40 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=17.7
Q ss_pred ccccCCCCCCCCCcccccCCc
Q 016728 161 ECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 161 ~C~tC~~~kP~RSkHC~~C~r 181 (384)
.|..|.....+++..|..|+.
T Consensus 4 ~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 4 ECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred cCCCCCCcChhhhccccccCC
Confidence 588899888888888888874
No 31
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=29.99 E-value=29 Score=25.63 Aligned_cols=23 Identities=35% Similarity=0.920 Sum_probs=20.7
Q ss_pred ccccccCCCCCCCCCcccccCCc
Q 016728 159 EKECSTCKIPKPARSKHCSICNR 181 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~C~r 181 (384)
.+-|..|+...|+-++-|.+|+.
T Consensus 4 ~kAC~~Ck~l~~~d~e~CP~Cgs 26 (64)
T COG2093 4 EKACKNCKRLTPEDTEICPVCGS 26 (64)
T ss_pred hHHHhhccccCCCCCccCCCCCC
Confidence 46799999999999999999986
No 32
>PRK00944 hypothetical protein; Provisional
Probab=28.29 E-value=75 Score=28.68 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCccCChh
Q 016728 4 QWLLIIHGLLTLLVVVSFLCGQWPIFEGTPI 34 (384)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~lfG~~p~~r~t~i 34 (384)
.|++++.+++++.++.++.+||.|...=+.|
T Consensus 15 ~w~~~~~~~~~~~a~~L~~mGR~pIC~CG~v 45 (195)
T PRK00944 15 FWLLAALAVLALQALILYAMGRVPICECGYV 45 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccCcce
Confidence 7899999999999999999999998877776
No 33
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=26.79 E-value=25 Score=30.69 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=16.9
Q ss_pred ccccCCCCCCCCCcccccCCcccccc
Q 016728 161 ECSTCKIPKPARSKHCSICNRCVARF 186 (384)
Q Consensus 161 ~C~tC~~~kP~RSkHC~~C~rCV~r~ 186 (384)
...+|+.. ..+||..|..|+.|.
T Consensus 142 ~s~sC~~~---~~~~CG~C~~C~~r~ 164 (169)
T cd01995 142 LTWSCYNG---GEKHCGECDSCLLRK 164 (169)
T ss_pred heeeccCC---CCCCCCCCHHHHHHH
Confidence 45566654 338999999999873
No 34
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=26.56 E-value=27 Score=33.94 Aligned_cols=20 Identities=45% Similarity=0.896 Sum_probs=16.1
Q ss_pred ccccccCCCCCCCCCcccccCC
Q 016728 159 EKECSTCKIPKPARSKHCSICN 180 (384)
Q Consensus 159 ~~~C~tC~~~kP~RSkHC~~C~ 180 (384)
-++|+||..++| +|.|+.|+
T Consensus 319 ~~fCstCG~~ga--~KrCs~CK 338 (396)
T KOG1710|consen 319 CQFCSTCGHPGA--KKRCSQCK 338 (396)
T ss_pred cccccccCCCCc--cchhhhhH
Confidence 379999998877 46788877
No 35
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.27 E-value=26 Score=21.55 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=8.8
Q ss_pred ccccCCCCCCC-CCcccccCCc
Q 016728 161 ECSTCKIPKPA-RSKHCSICNR 181 (384)
Q Consensus 161 ~C~tC~~~kP~-RSkHC~~C~r 181 (384)
.|..|+..... ...+|+.|+-
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp --TTTS----S--EEE-TTT--
T ss_pred cCCcCCCcCCCCceEECccCCC
Confidence 57788877766 6788888874
No 36
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=25.47 E-value=57 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCC
Q 016728 14 TLLVVVSFLCGQWP 27 (384)
Q Consensus 14 ~~~~~~~~lfG~~p 27 (384)
+.++|++++||...
T Consensus 11 IIlvIvlLlFG~~K 24 (75)
T PRK04561 11 VVLVIVLLVFGTKR 24 (75)
T ss_pred HHHHHHHHHhCCcc
Confidence 33446688899653
No 37
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=25.45 E-value=53 Score=26.06 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhcCC
Q 016728 12 LLTLLVVVSFLCGQW 26 (384)
Q Consensus 12 ~~~~~~~~~~lfG~~ 26 (384)
+++.++|+++|||..
T Consensus 9 LlIIlvIvLLlFG~k 23 (89)
T PRK03554 9 LLIIAVIVVLLFGTK 23 (89)
T ss_pred HHHHHHHHHHHhCcc
Confidence 344455667778864
No 38
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=24.93 E-value=55 Score=25.55 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhcCC
Q 016728 13 LTLLVVVSFLCGQW 26 (384)
Q Consensus 13 ~~~~~~~~~lfG~~ 26 (384)
++.++|+++|||..
T Consensus 10 liIlvivlllFG~k 23 (81)
T PRK04598 10 LIIAVIVVLLFGTK 23 (81)
T ss_pred HHHHHHHHHHhCcc
Confidence 33445666778854
No 39
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=24.72 E-value=58 Score=24.92 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCC
Q 016728 14 TLLVVVSFLCGQWP 27 (384)
Q Consensus 14 ~~~~~~~~lfG~~p 27 (384)
+.++|++++||...
T Consensus 11 iIl~IvlllFG~kK 24 (73)
T PRK02958 11 IVLVIVVLVFGTKK 24 (73)
T ss_pred HHHHHHHHHhCcch
Confidence 34456777888653
No 40
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=23.91 E-value=62 Score=24.85 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcCC
Q 016728 14 TLLVVVSFLCGQW 26 (384)
Q Consensus 14 ~~~~~~~~lfG~~ 26 (384)
+.++|++++||..
T Consensus 11 iIl~i~lllFG~k 23 (74)
T PRK01833 11 IIVAIIVLLFGTK 23 (74)
T ss_pred HHHHHHHHHhCcc
Confidence 3445667888864
No 42
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=23.83 E-value=35 Score=33.43 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=25.8
Q ss_pred CCcccccCCccccccccccccccccccccchh
Q 016728 172 RSKHCSICNRCVARFDHHCGWMNNCIGERNTR 203 (384)
Q Consensus 172 RSkHC~~C~rCV~r~DHHC~WinnCVG~~N~r 203 (384)
+.+.|..|+.-....-|||.--+.||.+.-|+
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHH 139 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHH 139 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccC
Confidence 67788888888888888888888888887664
No 43
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=23.76 E-value=23 Score=36.14 Aligned_cols=25 Identities=28% Similarity=0.744 Sum_probs=19.4
Q ss_pred ccccccCCCCC--CCCCcccccCCccc
Q 016728 159 EKECSTCKIPK--PARSKHCSICNRCV 183 (384)
Q Consensus 159 ~~~C~tC~~~k--P~RSkHC~~C~rCV 183 (384)
.++|+.|...= --|-|||+.||+-+
T Consensus 180 V~~CP~Ca~~F~l~rRrHHCRLCG~Vm 206 (505)
T KOG1842|consen 180 VQFCPECANSFGLTRRRHHCRLCGRVM 206 (505)
T ss_pred ccccccccchhhhHHHhhhhhhcchHH
Confidence 47999997643 45889999999843
No 44
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=23.61 E-value=62 Score=25.08 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhcC
Q 016728 13 LTLLVVVSFLCGQ 25 (384)
Q Consensus 13 ~~~~~~~~~lfG~ 25 (384)
++.++|+++|||.
T Consensus 10 lIIlvIvlllFG~ 22 (78)
T PRK00720 10 LIVLAVVLLLFGR 22 (78)
T ss_pred HHHHHHHHHHhCc
Confidence 3445566777884
No 45
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=23.42 E-value=27 Score=36.17 Aligned_cols=22 Identities=32% Similarity=0.945 Sum_probs=16.6
Q ss_pred cccccCCCCCC--CCCcccccCCc
Q 016728 160 KECSTCKIPKP--ARSKHCSICNR 181 (384)
Q Consensus 160 ~~C~tC~~~kP--~RSkHC~~C~r 181 (384)
..|-.|+.+-- .|-|||+.||.
T Consensus 902 ~~cmacq~pf~afrrrhhcrncgg 925 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGG 925 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCc
Confidence 46888887643 37899999886
No 46
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=23.34 E-value=62 Score=25.39 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCC
Q 016728 14 TLLVVVSFLCGQW 26 (384)
Q Consensus 14 ~~~~~~~~lfG~~ 26 (384)
+.++|+++|||..
T Consensus 11 IIlvIvLLLFG~k 23 (85)
T PRK01614 11 VVGILIVLLFGTS 23 (85)
T ss_pred HHHHHHHHHhCcc
Confidence 3445667889965
No 47
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.81 E-value=77 Score=29.49 Aligned_cols=6 Identities=50% Similarity=0.911 Sum_probs=2.9
Q ss_pred CCCCHh
Q 016728 353 NIYDKG 358 (384)
Q Consensus 353 N~YD~G 358 (384)
+-||.|
T Consensus 143 ~~y~~~ 148 (217)
T PF07423_consen 143 MTYDSG 148 (217)
T ss_pred ccccCC
Confidence 335555
No 48
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=27 Score=35.15 Aligned_cols=26 Identities=38% Similarity=0.842 Sum_probs=19.2
Q ss_pred CCCCCcccccCCcccccccccccccccccccc
Q 016728 169 KPARSKHCSICNRCVARFDHHCGWMNNCIGER 200 (384)
Q Consensus 169 kP~RSkHC~~C~rCV~r~DHHC~WinnCVG~~ 200 (384)
+-.|-.||..|+. +|| +|+.||||.-
T Consensus 10 sl~~p~l~~tC~e----~~h--~w~~~c~ga~ 35 (460)
T KOG1398|consen 10 SLARPSLAETCDE----ADH--SWVANCIGAL 35 (460)
T ss_pred hhcCchHhhhhhh----ccC--CcccchhHHH
Confidence 4456667777775 677 7899999963
No 49
>PLN00186 ribosomal protein S26; Provisional
Probab=20.82 E-value=40 Score=27.75 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=14.4
Q ss_pred CCCcccccCCcccccccccc
Q 016728 171 ARSKHCSICNRCVARFDHHC 190 (384)
Q Consensus 171 ~RSkHC~~C~rCV~r~DHHC 190 (384)
.+.-||..|++||.+=---+
T Consensus 18 v~~V~C~nCgr~vPKDKAIk 37 (109)
T PLN00186 18 VKRIRCSNCGKCVPKDKAIK 37 (109)
T ss_pred CcceeeCCCcccccccceEE
Confidence 34567999999999744434
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.64 E-value=62 Score=27.25 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 016728 5 WLLIIHGLL 13 (384)
Q Consensus 5 ~~~~~~~~~ 13 (384)
|++++.+++
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 444433333
No 51
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.60 E-value=76 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCCC
Q 016728 13 LTLLVVVSFLCGQWPI 28 (384)
Q Consensus 13 ~~~~~~~~~lfG~~p~ 28 (384)
++.++|++++||+...
T Consensus 10 liIlvI~lllFGpkKL 25 (67)
T PRK03625 10 LVVAALVVLLFGTKKL 25 (67)
T ss_pred HHHHHHHHHHcCccHH
Confidence 3445666788997653
No 52
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=20.57 E-value=1.3e+02 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=21.4
Q ss_pred cccccCCC-CCCCCCcccccCCcccccccccc
Q 016728 160 KECSTCKI-PKPARSKHCSICNRCVARFDHHC 190 (384)
Q Consensus 160 ~~C~tC~~-~kP~RSkHC~~C~rCV~r~DHHC 190 (384)
.-|+.|+. .+|....+|..|+.-..|..++-
T Consensus 216 ~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~s 247 (403)
T TIGR00155 216 RSCSACHTTILPAQEPVCPRCSTPLYVRRRNS 247 (403)
T ss_pred CcCCCCCCccCCCCCcCCcCCCCcccCCCCCC
Confidence 46999998 45555667888887666555544
No 53
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=20.25 E-value=3.3e+02 Score=27.64 Aligned_cols=14 Identities=36% Similarity=1.075 Sum_probs=12.1
Q ss_pred ccccCCcccccccccccc
Q 016728 175 HCSICNRCVARFDHHCGW 192 (384)
Q Consensus 175 HC~~C~rCV~r~DHHC~W 192 (384)
.|..||.| +|+||-
T Consensus 68 ~C~~Cg~C----~~~CP~ 81 (389)
T PRK15033 68 LCHNCGAC----LHACQY 81 (389)
T ss_pred hCcCcccc----cccCcC
Confidence 79999999 468997
Done!