Query 016728
Match_columns 384
No_of_seqs 321 out of 1631
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 71.5 1.7 5.7E-05 30.4 1.6 28 158-185 18-45 (56)
2 3j21_g 50S ribosomal protein L 65.2 2.6 9E-05 28.9 1.5 29 157-185 12-40 (51)
3 1joc_A EEA1, early endosomal a 46.3 8 0.00027 31.4 1.7 24 160-183 70-95 (125)
4 1x4u_A Zinc finger, FYVE domai 46.3 8.9 0.0003 28.7 1.9 23 160-182 15-39 (84)
5 1dvp_A HRS, hepatocyte growth 44.7 8.3 0.00028 34.3 1.7 24 160-183 162-187 (220)
6 1wfk_A Zinc finger, FYVE domai 40.1 10 0.00036 28.8 1.4 24 160-183 10-35 (88)
7 2dkt_A Ring finger and CHY zin 38.6 12 0.0004 31.3 1.5 32 154-185 78-110 (143)
8 1vfy_A Phosphatidylinositol-3- 38.2 8.5 0.00029 28.0 0.6 24 160-183 12-37 (73)
9 2yw8_A RUN and FYVE domain-con 34.0 11 0.00037 28.1 0.6 24 160-183 20-45 (82)
10 1z2q_A LM5-1; membrane protein 33.3 11 0.00039 28.2 0.6 24 160-183 22-47 (84)
11 2dkt_A Ring finger and CHY zin 29.8 11 0.00038 31.5 -0.0 36 156-191 98-136 (143)
12 3zyq_A Hepatocyte growth facto 26.5 17 0.00058 32.5 0.6 24 160-183 165-190 (226)
13 1y02_A CARP2, FYVE-ring finger 25.5 16 0.00056 29.5 0.3 23 160-182 20-44 (120)
14 3t7l_A Zinc finger FYVE domain 25.4 19 0.00064 27.4 0.6 24 160-183 21-46 (90)
15 3u5e_m 60S ribosomal protein L 25.2 24 0.00082 28.3 1.3 25 158-182 92-118 (128)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=71.51 E-value=1.7 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.669 Sum_probs=23.8
Q ss_pred cccccccCCCCCCCCCcccccCCccccc
Q 016728 158 TEKECSTCKIPKPARSKHCSICNRCVAR 185 (384)
Q Consensus 158 ~~~~C~tC~~~kP~RSkHC~~C~rCV~r 185 (384)
..+.|..|...-|+|+..|+.||..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4579999999999999999998865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.16 E-value=2.6 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=24.4
Q ss_pred ccccccccCCCCCCCCCcccccCCccccc
Q 016728 157 YTEKECSTCKIPKPARSKHCSICNRCVAR 185 (384)
Q Consensus 157 ~~~~~C~tC~~~kP~RSkHC~~C~rCV~r 185 (384)
...+.|..|...-|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 34579999999999999999999875444
No 3
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.32 E-value=8 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=17.7
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|... --.|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 478888764 346889999999743
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.28 E-value=8.9 Score=28.74 Aligned_cols=23 Identities=22% Similarity=0.673 Sum_probs=17.1
Q ss_pred cccccCCCC--CCCCCcccccCCcc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRC 182 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rC 182 (384)
..|..|+.. --.|-|||+.||+-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 468777653 34688999999874
No 5
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.72 E-value=8.3 Score=34.33 Aligned_cols=24 Identities=25% Similarity=0.814 Sum_probs=17.9
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
+.|..|+.. --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 678888753 235889999999854
No 6
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.11 E-value=10 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=17.6
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|+.. --.|-|||+.||+-+
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCcCcCCcccCccccccCCCCCCEE
Confidence 468888753 346889999999743
No 7
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=38.61 E-value=12 Score=31.34 Aligned_cols=32 Identities=25% Similarity=0.659 Sum_probs=19.9
Q ss_pred CccccccccccCCCCCCCCC-cccccCCccccc
Q 016728 154 NIIYTEKECSTCKIPKPARS-KHCSICNRCVAR 185 (384)
Q Consensus 154 ~~~~~~~~C~tC~~~kP~RS-kHC~~C~rCV~r 185 (384)
+..+...+|..|+.+.+++. .||..||-|-..
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIG 110 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEES
T ss_pred CccceeeEeceeecccCCCceecCCCCCceecc
Confidence 44555668888888765543 566666666543
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.21 E-value=8.5 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=17.6
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 468888753 345889999999844
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.98 E-value=11 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=17.6
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 468888653 345889999999854
No 10
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.27 E-value=11 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=17.8
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|+.. --.|-|||+.||+-+
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCcCcCCccccchhcccccCCCcEE
Confidence 578888764 345889999999754
No 11
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=29.82 E-value=11 Score=31.48 Aligned_cols=36 Identities=31% Similarity=0.675 Sum_probs=27.6
Q ss_pred cccccccccCCCCCCCCCcccccCCcccc--ccc-cccc
Q 016728 156 IYTEKECSTCKIPKPARSKHCSICNRCVA--RFD-HHCG 191 (384)
Q Consensus 156 ~~~~~~C~tC~~~kP~RSkHC~~C~rCV~--r~D-HHC~ 191 (384)
+|+=..|..|++-+..--.||..||.|+. ..| |.|+
T Consensus 98 ~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 98 QYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred eecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 45556788888887788899999999964 344 8775
No 12
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.53 E-value=17 Score=32.53 Aligned_cols=24 Identities=29% Similarity=0.886 Sum_probs=17.7
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|+.. --.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 579888742 234789999999854
No 13
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=25.50 E-value=16 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.715 Sum_probs=17.3
Q ss_pred cccccCCCC--CCCCCcccccCCcc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRC 182 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rC 182 (384)
..|..|+.. --.|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 478888653 34688999999984
No 14
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.45 E-value=19 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.820 Sum_probs=17.3
Q ss_pred cccccCCCC--CCCCCcccccCCccc
Q 016728 160 KECSTCKIP--KPARSKHCSICNRCV 183 (384)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (384)
..|..|+.. --.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 568888753 235789999998744
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.24 E-value=24 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.701 Sum_probs=21.4
Q ss_pred cccccccCCCCCCCCCccccc--CCcc
Q 016728 158 TEKECSTCKIPKPARSKHCSI--CNRC 182 (384)
Q Consensus 158 ~~~~C~tC~~~kP~RSkHC~~--C~rC 182 (384)
..+.|..|...-|+|++.|+. ||+.
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 347999999999999999994 8764
Done!