BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016730
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 165/290 (56%), Gaps = 11/290 (3%)
Query: 92 MELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGA 151
+ + E+ EKP P C R NTLK +DL L +G + W+K G + I +
Sbjct: 33 IRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVP-WAKEGFCLTREPFSITS 91
Query: 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
TPE++ G +Q ASS P +AL P+ E V D AAAPGGKT+Y+A L +N G+IYA ++
Sbjct: 92 TPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDV 151
Query: 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDES 270
+RL+ NL R+GV N I+ + + + LN D++LLDAPC+G+G I K+
Sbjct: 152 DENRLRETRLNLSRLGVLNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPE 208
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
K +++ +DI+ C LQ +L+ ++++ K GG +VYSTCS+ ENE VI +AL
Sbjct: 209 RKWNRTXDDIKFCQGLQXRLLEKGLEVL----KPGGILVYSTCSLEPEENEFVIQWALDN 264
Query: 331 RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
DV+L+P L +G ++ RR YP VH GFF+AK+
Sbjct: 265 FDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKI 312
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 165/284 (58%), Gaps = 34/284 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
G++ ++G+++ F P+ + FF+AK+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKL 271
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV D+AAAPG KTT I+A N G
Sbjct: 87 GSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISARXNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEXFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 39/286 (13%)
Query: 104 ICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVP----------IGATP 153
I +R NTLK ++ L GV VV +VP +
Sbjct: 187 ISIRVNTLKANVEEVIGELEEDGVE------------VVRSERVPTILKIKGPYNFDTSS 234
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ G ++Q +S + + L P+ E V+D+AAAPGGKTT++A LMKN G IYA ++
Sbjct: 235 AFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK 294
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R+K L + RMG+ D + P+++G D+VLLDAPC+ +G I K+ ++
Sbjct: 295 MRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRW 354
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-D 332
+ I + S LQ++L+ +A +V K GG ++Y+TCSI ENE I + L +
Sbjct: 355 RLREDKINEMSQLQRELLESAARLV----KPGGRLLYTTCSIFKEENEKNIRWFLNVHPE 410
Query: 333 VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
KLVP + GF LE T R +PH H+ GFF A
Sbjct: 411 FKLVPLKSPYD-PGF-----------LEGTMRAWPHRHSTIGFFYA 444
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 137/289 (47%), Gaps = 27/289 (9%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK--WSKVGLVVYDSQVPIGATPEYM 156
E R LR NTLK L R ++ PL W + G Y + G P +
Sbjct: 27 EGKRTYGLRVNTLK-----LPPEAFQR-ISPWPLRPIPWCQEGFY-YPEEARPGPHPFFY 79
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT++AA M GL+ ANE+ R+
Sbjct: 80 AGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV 139
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
+ L N+ R G V L + G RVLLDAPCSG G+ KD
Sbjct: 140 RGLLENVERWGAP-LAVTQAPPRALAEAFG-TYFHRVLLDAPCSGEGMFRKDREAARHWG 197
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR----- 331
++ + +QK L+ A ++ GG +VYSTC+ ENE V+ + LK
Sbjct: 198 PSAPKRMAEVQKALLAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRL 253
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
D +L P F G + E +P L KT R +PH +G F+A+
Sbjct: 254 EDARLHPL---FA-PGVPEWGEG--NPELLKTARLWPHRLEGEGHFLAR 296
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 137/289 (47%), Gaps = 27/289 (9%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK--WSKVGLVVYDSQVPIGATPEYM 156
E R LR NTLK L R ++ PL W + G Y + G P +
Sbjct: 27 EGKRTYGLRVNTLK-----LPPEAFQR-ISPWPLRPIPWCQEGFY-YPEEARPGPHPFFY 79
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT++AA M GL+ ANE+ R+
Sbjct: 80 AGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV 139
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
+ L N+ R G V L + G RVLLDAPCSG G+ KD
Sbjct: 140 RGLLENVERWGAP-LAVTQAPPRALAEAFG-TYFHRVLLDAPCSGEGMFRKDREAARHWG 197
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR----- 331
++ + +QK L+ A ++ GG +VYSTC+ ENE V+ + LK
Sbjct: 198 PSAPKRMAEVQKALLAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRL 253
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
D +L P F G + E +P L KT R +PH +G F+A+
Sbjct: 254 EDARLHPL---FA-PGVPEWGEG--NPELLKTARLWPHRLEGEGHFLAR 296
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKAS 214
+ AG+ Q S+ + A A + E+V+D+ AAPGGK+T +AA K GL+ NE+
Sbjct: 82 HQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPK 141
Query: 215 RLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSGTGVISKDESVKT 273
R K L+ N+ R GV+N IV N+ EL P G DR+++DAPCSG G KD +
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGF--FDRIVVDAPCSGEGXFRKDPNAIK 199
Query: 274 SKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333
+ E C Q++++ +AI + K+ G ++YSTC+ ENE +I + ++ V
Sbjct: 200 EWTEESPLYCQKRQQEILSSAIKXL----KNKGQLIYSTCTFAPEENEEIISWLVENYPV 255
Query: 334 KL--VPC--GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ +P + GR + LEKT R +PH +G FVAK+
Sbjct: 256 TIEEIPLTQSVSSGRSEWGSVA------GLEKTIRIWPHKDQGEGHFVAKL 300
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 135/289 (46%), Gaps = 27/289 (9%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK--WSKVGLVVYDSQVPIGATPEYM 156
E R LR NTLK L R ++ PL W + G Y + G P +
Sbjct: 27 EGKRTYGLRVNTLK-----LPPEAFQR-ISPWPLRPIPWCQEGFY-YPEEARPGPHPFFY 79
Query: 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT++AA GL+ ANE+ R+
Sbjct: 80 AGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEVDGKRV 139
Query: 217 KSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
+ L N+ R G V L + G RVLLDAPCSG G KD
Sbjct: 140 RGLLENVERWGAP-LAVTQAPPRALAEAFG-TYFHRVLLDAPCSGEGXFRKDREAARHWG 197
Query: 277 LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR----- 331
++ + +QK L+ A ++ GG +VYSTC+ ENE V+ + LK
Sbjct: 198 PSAPKRXAEVQKALLAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRL 253
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
D +L P F G + E +P L KT R +PH +G F+A+
Sbjct: 254 EDARLHPL---FA-PGVPEWGEG--NPELLKTARLWPHRLEGEGHFLAR 296
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 31/312 (9%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ L + +P + ++E+ + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ + V ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGG
Sbjct: 202 HADYPDA--VRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+I + ++ A ++ RL + NL R+G+ T V DG + G D
Sbjct: 260 KTTHILEVAPEAQVV-AVDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPSQWCGEQQFD 317
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
R+LLDAPCS TGVI + +K + DI + + LQ ++ +D + + K+GG +VY+
Sbjct: 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEI----LDAIWPHLKTGGTLVYA 373
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGL--DFGRQGFVRFREHRFHPSLEKTRRFYPH 368
TCS++ EN I L++ D +L G G+Q P
Sbjct: 374 TCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNL-------------------PG 414
Query: 369 VHNMDGFFVAKV 380
DGFF AK+
Sbjct: 415 AEEGDGFFYAKL 426
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 138/303 (45%), Gaps = 40/303 (13%)
Query: 103 PICLRTNTLKTRRRDLADVLINRGVN--------------------LDPLSKWSKVGLVV 142
P +R NTLKT D+ D +G + LDPL L+V
Sbjct: 11 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE----LLV 66
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
+ +Q + P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDAPCSG 261
G I+A ++ A RL S+ L R GV+ + D + P + V +LLD CSG
Sbjct: 127 QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186
Query: 262 TGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+ S+ +E + S + + Q++ + A+ S +VYSTCS+ E
Sbjct: 187 SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-----PSLQRLVYSTCSLCQEE 241
Query: 320 NEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
NE V+ AL++ +L P + +G F P E R P GFFV
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFV 295
Query: 378 AKV 380
A +
Sbjct: 296 AVI 298
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 22/182 (12%)
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL---IYANEMKASRL 216
Y L A+S LPV+AL Q + V+D+ AAPGGKT AL++ TG + AN++ SR+
Sbjct: 130 YYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKTL---ALLQ-TGCCRNLAANDLSPSRI 185
Query: 217 KSLTANLH-------RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT--GVISK 267
L LH R G V ++DG + ++ G +T DRVL+D PC+ + +
Sbjct: 186 ARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWGELEG-DTYDRVLVDVPCTTDRHSLHEE 243
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ ++ ++ Q LQ QL+ A + +K GG++VYSTCS+ +NE V+ A
Sbjct: 244 ENNIFKRSRKKERQILPVLQVQLLAAGL----LATKPGGHVVYSTCSLSHLQNEYVVQGA 299
Query: 328 LK 329
++
Sbjct: 300 IE 301
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 22/182 (12%)
Query: 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL---IYANEMKASRL 216
Y L A+S LPV+AL Q + V+D+ AAPGGKT AL++ TG + AN++ SR+
Sbjct: 131 YYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTL---ALLQ-TGCCRNLAANDLSPSRI 186
Query: 217 KSLTANLH-------RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT--GVISK 267
L LH R G V ++DG + ++ G +T DRVL+D PC+ + +
Sbjct: 187 ARLQKILHSYVPEEIRDG-NQVRVTSWDGRKWGELEG-DTYDRVLVDVPCTTDRHSLHEE 244
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
+ ++ ++ Q LQ QL+ A + +K GG++VYSTCS+ +NE V+ A
Sbjct: 245 ENNIFKRSRKKERQILPVLQVQLLAAGL----LATKPGGHVVYSTCSLSHLQNEYVVQGA 300
Query: 328 LK 329
++
Sbjct: 301 IE 302
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
+E V+D+ G Y++ ++ G +YA +++ + ++++G+ N V
Sbjct: 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS 95
Query: 237 DGNELPKVLGLNTVDRVLL 255
+ N++P L NTVD + +
Sbjct: 96 EENKIP--LPDNTVDFIFM 112
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGF 347
+ +S CS+ +N A+ D+ ++K + P +FGR+G
Sbjct: 264 VTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGL 303
>pdb|1WHU|A Chain A, Solution Structure Of The Alpha-Helical Domain From Mouse
Hypothetical Pnpase
Length = 104
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 36 RIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELI 95
+I + ++ + F D SR E V +++LD + L E FP V+ E+I
Sbjct: 23 KIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEH----------LKEKFPEVDQFEII 72
Query: 96 ESFEKPRPICLRTNTLKTRRR 116
ESF R+ L +R
Sbjct: 73 ESFNIVAKEVFRSIILNEYKR 93
>pdb|3HDX|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Np_809182.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.50 A Resolution
Length = 478
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYAN-EMKASRL 216
+ID A+ K T IA L TGL Y+N +K SR+
Sbjct: 223 IIDHASEINAKYTSIADLTSETGLFYSNASVKGSRI 258
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANE 210
ATP Y + AS+ + ++ LAP RV++ GG T ++A + GL+ + E
Sbjct: 77 ATPTYP------KDASAMVTLLDLAP--GMRVLEAGTGSGGLTLFLARAVGEKGLVESYE 128
Query: 211 MKASRLKSLTANL 223
+ L N+
Sbjct: 129 ARPHHLAQAERNV 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,879,436
Number of Sequences: 62578
Number of extensions: 437971
Number of successful extensions: 1150
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 19
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)