BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016730
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/379 (65%), Positives = 303/379 (79%), Gaps = 5/379 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ EE F LP E+E++ Q P DL + +RI++IV +L +F ++G SR EY
Sbjct: 210 LQINVDEEP--FVLPPAGEMEQDAQAP-DLQRVHKRIQDIVGILRDFGAQREEGRSRSEY 266
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +LK DL YY Y +FL+G L+++FP EL+E +E+ E PRP+ LRTNTLKTRRRDLA
Sbjct: 267 LNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQ 326
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 327 ALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 386
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+Y+A LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 387 RILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQ 446
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DI +C++LQK+L+L+AID V+A
Sbjct: 447 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNA 504
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RFRE RFHPSL
Sbjct: 505 TSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLR 564
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 565 STRRFYPHTHNMDGFFIAK 583
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/379 (64%), Positives = 304/379 (80%), Gaps = 4/379 (1%)
Query: 1 MQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEY 60
+Q+N+ +E + F LP E +++ Q P DL + +RI++IV VL +F ++G SR EY
Sbjct: 194 LQINVEDE-EAFVLPPAGETDQDGQAP-DLQRVHKRIQDIVGVLRDFGAQREEGRSRAEY 251
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ +L+ DL +YY Y +FL+ L+E+FP EL+E +E+ E PRPI LRTNTLKTRRRDLA
Sbjct: 252 LSRLQKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQ 311
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
+LINRGVNLDPL KWSK GLVVYDS VPIGATPEY+AG YMLQ ASS LPVMALAPQE E
Sbjct: 312 LLINRGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHE 371
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
R++DM APGGKT+YIA LMKNTG+I AN+ A RLKS+ NLHR+GVTNTI+ +YDG +
Sbjct: 372 RILDMCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQ 431
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
PKV+G DRVLLDAPCSGTGVISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A
Sbjct: 432 FPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNA 489
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
SK+GGY+VY TCSI V ENE V+DYALKKR+V+LVP GLDFG++GF RF+ RFHP+L
Sbjct: 490 ASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLR 549
Query: 361 KTRRFYPHVHNMDGFFVAK 379
TRRFYPH HNMDGFF+AK
Sbjct: 550 STRRFYPHTHNMDGFFIAK 568
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/356 (65%), Positives = 291/356 (81%), Gaps = 4/356 (1%)
Query: 27 PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMF 86
P DL +Q RI+EIVRVL++FK+L + G +R EYV QL D+ +YYGY+ FL L E+F
Sbjct: 188 PQDLSQIQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELF 247
Query: 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ 146
E +E E+ E PRP+ +RTNTLKT+RR+LA LINRGVNL+P+ KWSKVGL V++SQ
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQ 307
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
VPIGATPEY+AG Y+LQ+ASSFLPVMALAPQ ER++DM++APGGK TY+AAL KNTG+I
Sbjct: 308 VPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGII 367
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLDAPCSGTGVI 265
+AN+ +R K+L+AN+HR+GV N IVCNYDG + P +V+G DRVLLDAPCSGTGVI
Sbjct: 368 FANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIG--GFDRVLLDAPCSGTGVI 425
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325
KD+SVKT+KS D S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI
Sbjct: 426 YKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQ 485
Query: 326 YALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
YALKKR +VKLV GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAK+
Sbjct: 486 YALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKL 541
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/367 (61%), Positives = 281/367 (76%), Gaps = 3/367 (0%)
Query: 14 LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYG 73
LPT+E+ E Q+ P+L + + R+ EIV+VL NFK L +G SR EYV +L D+ Y+G
Sbjct: 181 LPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFG 240
Query: 74 YNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLS 133
Y FL L +F P E ME E+ E RPI +RTNTLKTRRRDLA L+NRGVNL P+
Sbjct: 241 YTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIG 300
Query: 134 KWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKT 193
W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLPV+AL P E ER++DMAAAPGGKT
Sbjct: 301 SWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKT 360
Query: 194 TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253
TYI+A+MKNTG ++AN+ SR KSL AN+HR+G TNTIVCNYD E PKV+G DR+
Sbjct: 361 TYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIG--GFDRI 418
Query: 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313
LLDAPCSGTGVI KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTC
Sbjct: 419 LLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTC 478
Query: 314 SIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
S+ V E+EAVIDYAL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+
Sbjct: 479 SVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNV 538
Query: 373 DGFFVAK 379
DGFFVAK
Sbjct: 539 DGFFVAK 545
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 165/284 (58%), Gaps = 34/284 (11%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+ +R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283
MGV NTI+ N D + L N + D++LLDAPCSG + K+ +V S EDI+ C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYC 186
Query: 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPC---- 338
S QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANE 242
Query: 339 --GLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
G++ ++G+++ F P+ + FF+AK+
Sbjct: 243 FKGINI-KEGYIKGTLRVFPPN--------------EPFFIAKL 271
>sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2
Length = 473
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 164/313 (52%), Gaps = 23/313 (7%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
STC++ EN+ V + LK+ V G F E H +P
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAVSFESLGNLFEHASLALTEEGFLH--------IFP 293
Query: 368 HVHNMDGFFVAKV 380
+++ +GFFVAK+
Sbjct: 294 QMYDCEGFFVAKI 306
>sp|Q9KRY1|RSMF_VIBCH Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmF PE=3 SV=2
Length = 473
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 164/313 (52%), Gaps = 23/313 (7%)
Query: 76 EFLIGALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
E I ++ ++ P P +L + I + ++P +R NTLK + + L P+
Sbjct: 9 EPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV-P 67
Query: 135 WSKVGLVVY--DSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPG 190
W + G + +S VP+G T E+MAG + +Q ASS +PV AL + V+DMAAAPG
Sbjct: 68 WCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPG 127
Query: 191 GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250
KTT +AALM N G++ ANE ASR+K L AN+ R G+ NT + N+DG L
Sbjct: 128 SKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP-ERF 186
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D VL+DAPCSG G I KD + SLE IQ + QK LI +A + K GG +VY
Sbjct: 187 DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQAL----KVGGTLVY 242
Query: 311 STCSIMVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
STC++ EN+ V + LK+ V G F E H +P
Sbjct: 243 STCTLSREENQQVC-WHLKQTYGDAVSFESLGNLFEHASLALTEEGFLH--------IFP 293
Query: 368 HVHNMDGFFVAKV 380
+++ +GFFVAK+
Sbjct: 294 QMYDCEGFFVAKI 306
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 163/295 (55%), Gaps = 21/295 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAP--QEKERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL ++ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNAGGIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G++N + ++DG L T D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++LI +A + + GG +VYSTC++ EN++VI++
Sbjct: 206 DADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVIEWL 261
Query: 328 LKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
L + + V+++P G F E H +P +++ +GFFVA++
Sbjct: 262 LSRYPQAVEILPLGELFPGAADALTAEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 162/296 (54%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ I + ++P +R NTLK D ++ G L P+ W + G + D +P+
Sbjct: 28 DFIAACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
G+T E+++G + +Q ASS LPV AL PQ ERV+D+AAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADNPQ-PERVMDVAAAPGSKTTQIAARMGNAGGI 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS 266
ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV+
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EAFDAILLDAPCSGEGVVR 204
Query: 267 KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326
KD + S E + Q++LI +A + + GG +VYSTC++ EN++V+ +
Sbjct: 205 KDADALKNWSPESNLDIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENQSVVQW 260
Query: 327 ALKK--RDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
L + + V+++P G F E H +P +++ +GFFVA++
Sbjct: 261 LLSRYPQAVEILPLGDLFSGAADALTAEGFLH--------VFPQIYDCEGFFVARL 308
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 158/299 (52%), Gaps = 28/299 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
E + S +P +R NTLK + G LDP+ W G + D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV-PWCDTGFWLSREDESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL E+ R ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+ANL R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ + EN+A
Sbjct: 201 GSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSLQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVR-FREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
V L K G F F + E +P + + +GFFVA++
Sbjct: 257 VCQSLLDK-------FGAAFSFDSLADLFPAAEQACTPEGYLHVWPQIFDSEGFFVARL 308
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 169/322 (52%), Gaps = 36/322 (11%)
Query: 74 YNEFLIGALVEMFPPVELME-LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+N+ I ++ + P ME I KP +R NTLK ++ ++ +G + DP+
Sbjct: 4 FNQNFINSIKQDLPSHLCMEDFISYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPI 63
Query: 133 SKWSKVGLVV-YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEK----ERVIDMAA 187
W + G + D +V +G T E++ G + +Q ASS LP AL E+ + V+DMA+
Sbjct: 64 P-WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMAS 122
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG- 246
APG KTT IAALM N GL+ ANE ASR+K L AN+ RMGV N + ++D +V G
Sbjct: 123 APGSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDA----RVFGE 178
Query: 247 --LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
D VLLDAPCSG G I KD + D++ QK LI +A + K+
Sbjct: 179 YMFEIFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSL----KA 234
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKT-- 362
GG +VYSTC++ EN+ V DY LK+R P ++F P +K+
Sbjct: 235 GGELVYSTCALSRQENQNVCDY-LKQR----YPDAVEF-------INLSSLFPGADKSCT 282
Query: 363 ----RRFYPHVHNMDGFFVAKV 380
+P +++ +GFFVAK+
Sbjct: 283 EEGFLHVWPQIYDSEGFFVAKI 304
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 29/299 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARL 308
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 29/299 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + +SGG +VYSTC++ ENE+V
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RSGGTLVYSTCTLNREENESVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G+ D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGVAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCMW-LKETYPDAVEFLPLGELFPAANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 160/298 (53%), Gaps = 26/298 (8%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG--LVVYDSQVPIG 150
E + S +P +R NTLK D + G D + W + G L D VP+G
Sbjct: 27 EFVASCRRPLRRSIRVNTLKISVSDFVMQMQPLGWQFDAV-PWCETGFWLTRADESVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMALAPQEKER----VIDMAAAPGGKTTYIAALMKNTGLI 206
T E+++G + +Q ASS LPV AL ++ + ++D AAAPG KTT IAALM N G++
Sbjct: 86 NTAEHLSGLFYIQEASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQGML 145
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYD----GNELPKVLGLNTVDRVLLDAPCSGT 262
ANE +SRLK L+AN+ R GVTN + ++D G LP+ T D +LLDAPCSG
Sbjct: 146 VANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLPE-----TFDAILLDAPCSGE 200
Query: 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322
G + KDE + S+E I + + +Q+ L+ +A + K GG +VYSTC++ EN+A
Sbjct: 201 GTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL----KPGGVLVYSTCTLSQQENQA 256
Query: 323 VIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
V L+K L LD F E P E +P + + +GFFVA++
Sbjct: 257 VCQSLLEKFGDALT---LDSLADLFPN-AEQACTP--EGYLHVWPQIFDSEGFFVARL 308
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV-YDSQ--VPI 149
+ + + ++P +R NTLKT D + G L P+ W + G + DS+ +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNKG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F + H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYHDAVEFLPLGDLFPGANKALTEDGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 161/299 (53%), Gaps = 29/299 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G++N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 259 LW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGTIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENEAV +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLDSAFHAL----RPGGTLVYSTCTLNRQENEAVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 29/299 (9%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
+ + + ++P +R NTLK D + + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L AN+ R G+ N + ++DG L D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALP-EMFDAILLDAPCSGEGV 202
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S E Q+ + Q++LI +A + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----CPGGTLVYSTCTLNQEENEAVC 258
Query: 325 DYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 259 RW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B2VJ83|RSMF_ERWT9 Ribosomal RNA small subunit methyltransferase F OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmF PE=3
SV=1
Length = 478
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 158/298 (53%), Gaps = 21/298 (7%)
Query: 90 ELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQ--- 146
E I S + P LR NTLK D ++ L P+ W + G +
Sbjct: 26 EFQRFITSSQLPLRRSLRVNTLKISVDDFLTLVEPYQWALTPI-PWCQEGFWISRDDADT 84
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
+P+G+T E++AG + +Q ASS LPV AL +RV+DMAAAPG KTT IAA M N G
Sbjct: 85 LPLGSTAEHLAGLFYIQEASSMLPVSALFDGGDMPQRVMDMAAAPGSKTTQIAAHMGNRG 144
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
I ANE ASR+K L ANL R GV+NT + ++DG L D VLLDAPCSG GV
Sbjct: 145 AILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRVFGPALP-ECFDAVLLDAPCSGEGV 203
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KD + S ++ + Q+ LI +A + + GG +VYSTC++ EN+ V+
Sbjct: 204 VRKDADALRNWSQSSTEEIAATQQALINSAFHAL----RPGGTLVYSTCTLNTRENQQVV 259
Query: 325 DYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ L++ VK+ P LD G R + E +PH+ + +GFFVA++
Sbjct: 260 NGLLEQYPDAVKVEP--LDTLFMGAER------ATTAEGYLHVFPHIFDSEGFFVARL 309
>sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmF PE=3 SV=1
Length = 478
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 157/296 (53%), Gaps = 16/296 (5%)
Query: 89 VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQ 146
+ + + I + ++P +R NTLK D ++G L P+ W G + +S
Sbjct: 23 LNMEDFISACQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPVP-WCDNGFWIEADESV 81
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTG 204
VP+G T E+M+G + +Q ASS +PV AL ++ + V+D AAAPG KTT IAALMKN G
Sbjct: 82 VPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPGSKTTQIAALMKNEG 141
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264
++ ANE ASR+K L AN+ R GV N + N+DG L D VLLDAPCSG G
Sbjct: 142 VLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-EQFDAVLLDAPCSGEGT 200
Query: 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324
+ KDE + + + + + QK LI +A + K GG +VYSTC++ EN+ V
Sbjct: 201 VRKDEDAMKNWTQASVLEIADTQKDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVC 256
Query: 325 DYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ + + LD G F + E +P V++ +GFFVA++
Sbjct: 257 HHLKETFGDAVEFESLD----GL--FENANAALTEEGFLHIFPQVYDCEGFFVARI 306
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLRLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT IAA M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGSKTTQIAARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 TILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RLGGTLVYSTCTLNREENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGTNKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 163/302 (53%), Gaps = 35/302 (11%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV---YDSQVPI 149
+ + + ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
G+T E+++G + +Q ASS LPV AL APQ RV+D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 205 LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL---NTVDRVLLDAPCSG 261
I ANE ASR+K L AN+ R G++N + ++DG +V G D +LLDAPCSG
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDG----RVFGAAVPEMFDAILLDAPCSG 199
Query: 262 TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321
GV+ KD + S E Q+ + Q++LI +A + + GG +VYSTC++ ENE
Sbjct: 200 EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENE 255
Query: 322 AVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVA 378
AV + LK+ V+ +P G F E H +P +++ +GFFVA
Sbjct: 256 AVCLW-LKETYPDAVEFLPLGDLFPGANKALTEEGFLH--------VFPQIYDCEGFFVA 306
Query: 379 KV 380
++
Sbjct: 307 RL 308
>sp|Q7MKY6|RSMF_VIBVY Ribosomal RNA small subunit methyltransferase F OS=Vibrio
vulnificus (strain YJ016) GN=rsmF PE=3 SV=2
Length = 472
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 154/299 (51%), Gaps = 30/299 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I ++P +R NTLK + +G L P+ W + G + +S+VP+G
Sbjct: 27 DFIAYCQQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPVP-WCETGFWIEADESKVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M G + +Q ASS +PV AL + E V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L + D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-ESFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + S E + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWSQESVLEIAATQKDLIESAFQAL----KPGGVMVYSTCTLSEEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFFVAKV 380
K FG V F EK +P V++ +GFFVA++
Sbjct: 260 KHT----------FGDA--VAFESLSSLFDGAEKALTEDGFLHIFPQVYDSEGFFVARI 306
>sp|Q8D9F3|RSMF_VIBVU Ribosomal RNA small subunit methyltransferase F OS=Vibrio
vulnificus (strain CMCP6) GN=rsmF PE=3 SV=1
Length = 472
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 154/299 (51%), Gaps = 30/299 (10%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY--DSQVPIG 150
+ I ++P +R NTLK + +G L P+ W + G + +S+VP+G
Sbjct: 27 DFIAYCQQPLRKSIRVNTLKISVDAFLTIAQEKGWTLHPVP-WCETGFWIEADESKVPLG 85
Query: 151 ATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA 208
T E+M G + +Q ASS +PV AL + E V+D AAAPG KTT IAALM N G++ A
Sbjct: 86 NTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDTAAAPGSKTTQIAALMNNQGILVA 145
Query: 209 NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD 268
NE ASR+K L AN+ R GV N + N+DG L + D VLLDAPCSG G + KD
Sbjct: 146 NEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWLP-ESFDAVLLDAPCSGEGTVRKD 204
Query: 269 ESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328
E + S E + + + QK LI +A + K GG +VYSTC++ EN+ V + L
Sbjct: 205 EDAMKNWSQESVLEIAATQKDLIESAFQAL----KPGGVMVYSTCTLSEEENQQVCHH-L 259
Query: 329 KKRDVKLVPCGLDFGRQGFVRFRE-HRFHPSLEKT------RRFYPHVHNMDGFFVAKV 380
K FG V F EK +P V++ +GFFVA++
Sbjct: 260 KHT----------FGDA--VAFESLSSLFDGAEKALTEDGFLHIFPQVYDSEGFFVARI 306
>sp|B4TKI0|RSMF_SALHS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
heidelberg (strain SL476) GN=rsmF PE=3 SV=2
Length = 479
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 158/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
>sp|B5R8V2|RSMF_SALG2 Ribosomal RNA small subunit methyltransferase F OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmF PE=3
SV=1
Length = 479
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 158/296 (53%), Gaps = 23/296 (7%)
Query: 93 ELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 149
E I + ++P +R NTLK D ++ G +L P+ W G + + +P+
Sbjct: 28 EFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLTPI-PWCHEGFWIERDDEEALPL 86
Query: 150 GATPEYMAGFYMLQSASSFLPVMALAPQEK--ERVIDMAAAPGGKTTYIAALMKNTGLIY 207
G+T E+++G + +Q ASS LPV AL + +RV+DMAAAPG KTT IAA M N G I
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAIL 146
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK 267
ANE ASR+K L AN+ R G+ NT + ++DG L D +LLDAPCSG GV+ K
Sbjct: 147 ANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP-EMFDAILLDAPCSGEGVVRK 205
Query: 268 DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327
D + S E + Q++L+ +A + + GG +VYSTC++ ENE V +
Sbjct: 206 DPDALKNWSPESNLDIAATQRELLNSAFHAL----RPGGTLVYSTCTLNRQENEEVCLW- 260
Query: 328 LKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
LK+ V+ +P G F E H +P +++ +GFFVA++
Sbjct: 261 LKETYADAVEFLPLGDLFPDADRALTPEGFLH--------VFPQIYDCEGFFVARL 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,018,283
Number of Sequences: 539616
Number of extensions: 5981228
Number of successful extensions: 20684
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 19791
Number of HSP's gapped (non-prelim): 252
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)