Query 016730
Match_columns 384
No_of_seqs 371 out of 2788
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122 tRNA and rRNA cytosine 100.0 8.2E-82 1.8E-86 610.4 26.3 373 3-383 67-441 (460)
2 COG0144 Sun tRNA and rRNA cyto 100.0 1.5E-72 3.3E-77 556.8 34.7 302 70-383 50-354 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 1.6E-69 3.5E-74 549.6 31.3 298 72-383 2-307 (470)
4 PRK14903 16S rRNA methyltransf 100.0 4E-65 8.6E-70 516.4 34.2 301 66-383 126-430 (431)
5 PRK14901 16S rRNA methyltransf 100.0 3E-65 6.5E-70 518.8 32.1 320 36-383 96-433 (434)
6 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 8.2E-67 1.8E-71 501.7 16.9 281 94-381 1-283 (283)
7 TIGR00563 rsmB ribosomal RNA s 100.0 2.2E-63 4.7E-68 504.2 35.1 324 37-383 91-426 (426)
8 PRK10901 16S rRNA methyltransf 100.0 3.1E-61 6.7E-66 488.4 35.3 324 34-383 93-427 (427)
9 PRK14902 16S rRNA methyltransf 100.0 4.3E-60 9.3E-65 482.5 35.5 332 36-383 98-443 (444)
10 PRK14904 16S rRNA methyltransf 100.0 2E-59 4.4E-64 477.5 34.3 330 36-384 98-444 (445)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 6.3E-58 1.4E-62 436.7 27.2 263 106-382 1-264 (264)
12 KOG2198 tRNA cytosine-5-methyl 100.0 3.6E-41 7.9E-46 324.5 15.9 254 81-338 31-324 (375)
13 KOG2360 Proliferation-associat 100.0 9.5E-38 2.1E-42 300.6 18.9 287 85-383 113-413 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.8 9.7E-18 2.1E-22 168.4 15.6 166 150-337 195-368 (396)
15 COG1092 Predicted SAM-dependen 99.7 4E-17 8.6E-22 162.4 10.1 176 139-336 179-364 (393)
16 COG2242 CobL Precorrin-6B meth 99.6 1.1E-14 2.4E-19 129.9 16.1 138 167-340 23-161 (187)
17 TIGR03704 PrmC_rel_meth putati 99.6 8.6E-14 1.9E-18 132.0 15.9 143 179-333 87-233 (251)
18 PRK09328 N5-glutamine S-adenos 99.6 2.3E-13 5.1E-18 130.0 18.2 231 76-334 9-256 (275)
19 PF13659 Methyltransf_26: Meth 99.5 1.7E-14 3.7E-19 119.8 8.7 116 179-314 1-117 (117)
20 PRK11783 rlmL 23S rRNA m(2)G24 99.5 6.6E-14 1.4E-18 150.5 15.5 164 150-338 513-678 (702)
21 PRK00377 cbiT cobalt-precorrin 99.5 2.8E-13 6.1E-18 123.8 17.2 133 168-333 30-163 (198)
22 TIGR00537 hemK_rel_arch HemK-r 99.5 1.4E-13 3E-18 123.7 14.7 156 166-338 7-163 (179)
23 PF10672 Methyltrans_SAM: S-ad 99.5 4.6E-15 1E-19 142.3 5.1 146 150-320 98-246 (286)
24 PRK14967 putative methyltransf 99.5 1.8E-13 4E-18 127.3 15.2 159 158-334 14-178 (223)
25 TIGR03533 L3_gln_methyl protei 99.5 6E-13 1.3E-17 128.4 18.4 128 176-313 119-252 (284)
26 TIGR01177 conserved hypothetic 99.5 2E-13 4.3E-18 134.4 14.0 133 173-333 177-309 (329)
27 PF12847 Methyltransf_18: Meth 99.5 3.5E-13 7.6E-18 110.9 11.2 111 178-313 1-112 (112)
28 COG4123 Predicted O-methyltran 99.5 3.6E-13 7.7E-18 126.1 12.5 164 157-334 16-188 (248)
29 TIGR00080 pimt protein-L-isoas 99.5 3.5E-13 7.6E-18 124.8 12.3 89 169-259 68-156 (215)
30 PF05175 MTS: Methyltransferas 99.5 8E-14 1.7E-18 124.5 7.7 126 164-314 17-142 (170)
31 PRK04266 fibrillarin; Provisio 99.5 2E-12 4.4E-17 120.7 16.8 106 174-311 68-175 (226)
32 PRK08287 cobalt-precorrin-6Y C 99.5 1.2E-12 2.5E-17 118.5 13.9 134 165-335 18-151 (187)
33 COG2226 UbiE Methylase involve 99.4 6.1E-13 1.3E-17 124.4 11.7 121 170-321 43-163 (238)
34 PTZ00146 fibrillarin; Provisio 99.4 5.3E-12 1.2E-16 121.1 16.6 114 167-311 115-236 (293)
35 COG2519 GCD14 tRNA(1-methylade 99.4 3.4E-12 7.4E-17 118.8 13.9 126 155-314 71-198 (256)
36 PF01209 Ubie_methyltran: ubiE 99.4 4.7E-13 1E-17 125.5 7.6 130 169-329 38-167 (233)
37 TIGR03534 RF_mod_PrmC protein- 99.4 7.9E-12 1.7E-16 117.5 16.0 148 178-337 87-238 (251)
38 PF13847 Methyltransf_31: Meth 99.4 3.9E-12 8.5E-17 111.1 12.9 121 177-325 2-122 (152)
39 PRK13942 protein-L-isoaspartat 99.4 2.9E-12 6.4E-17 118.5 12.2 87 169-257 67-153 (212)
40 TIGR00479 rumA 23S rRNA (uraci 99.4 5.2E-12 1.1E-16 128.8 14.4 88 172-262 286-375 (431)
41 PRK03522 rumB 23S rRNA methylu 99.4 3.1E-12 6.7E-17 125.3 12.1 86 174-263 169-254 (315)
42 TIGR02469 CbiT precorrin-6Y C5 99.4 1.2E-11 2.6E-16 103.1 14.1 110 172-312 13-122 (124)
43 PRK07402 precorrin-6B methylas 99.4 2.9E-12 6.4E-17 116.8 10.8 147 158-339 20-169 (196)
44 TIGR00536 hemK_fam HemK family 99.4 1.9E-11 4E-16 118.0 16.9 128 179-314 115-246 (284)
45 PF08704 GCD14: tRNA methyltra 99.4 1.9E-12 4.1E-17 122.0 9.6 117 165-313 27-148 (247)
46 PF05958 tRNA_U5-meth_tr: tRNA 99.4 2.6E-12 5.6E-17 127.6 11.1 89 171-263 190-292 (352)
47 PRK13944 protein-L-isoaspartat 99.4 8.3E-12 1.8E-16 114.8 13.4 86 171-258 65-151 (205)
48 PRK11805 N5-glutamine S-adenos 99.4 8.4E-12 1.8E-16 121.7 14.2 137 180-333 135-279 (307)
49 COG2263 Predicted RNA methylas 99.4 1.3E-11 2.9E-16 110.1 13.9 122 174-334 41-162 (198)
50 PRK00121 trmB tRNA (guanine-N( 99.4 4.7E-12 1E-16 116.2 11.4 133 178-335 40-176 (202)
51 PRK14968 putative methyltransf 99.4 1.9E-11 4.1E-16 109.7 14.6 157 167-337 12-170 (188)
52 PRK13168 rumA 23S rRNA m(5)U19 99.3 7.7E-12 1.7E-16 128.0 13.0 87 173-262 292-380 (443)
53 COG2265 TrmA SAM-dependent met 99.3 5.9E-12 1.3E-16 127.6 11.9 111 170-313 285-396 (432)
54 PF01135 PCMT: Protein-L-isoas 99.3 3.3E-12 7.2E-17 117.7 8.8 88 170-259 64-151 (209)
55 TIGR00138 gidB 16S rRNA methyl 99.3 3.9E-11 8.5E-16 108.3 14.6 123 178-338 42-167 (181)
56 KOG1540 Ubiquinone biosynthesi 99.3 4E-11 8.7E-16 111.2 13.0 138 170-338 92-237 (296)
57 TIGR02752 MenG_heptapren 2-hep 99.3 5E-11 1.1E-15 111.1 13.9 115 170-312 37-151 (231)
58 PRK00107 gidB 16S rRNA methylt 99.3 4E-11 8.6E-16 108.8 12.9 121 178-336 45-165 (187)
59 COG2518 Pcm Protein-L-isoaspar 99.3 3.6E-11 7.8E-16 109.7 12.2 97 157-258 51-147 (209)
60 TIGR00438 rrmJ cell division p 99.3 6.2E-11 1.3E-15 107.3 13.3 125 175-327 29-159 (188)
61 PRK00312 pcm protein-L-isoaspa 99.3 5.1E-11 1.1E-15 109.9 12.7 85 170-259 70-154 (212)
62 PRK14966 unknown domain/N5-glu 99.3 1.7E-10 3.6E-15 115.8 17.3 146 176-336 249-401 (423)
63 COG1041 Predicted DNA modifica 99.3 3.4E-11 7.3E-16 117.2 11.7 122 170-313 189-311 (347)
64 PRK09489 rsmC 16S ribosomal RN 99.3 4E-11 8.7E-16 118.6 12.5 129 164-319 182-310 (342)
65 COG2890 HemK Methylase of poly 99.3 9.3E-11 2E-15 112.9 14.4 135 181-332 113-254 (280)
66 PLN02233 ubiquinone biosynthes 99.2 5.5E-11 1.2E-15 113.5 11.7 117 171-315 66-185 (261)
67 PRK14121 tRNA (guanine-N(7)-)- 99.2 9.1E-11 2E-15 116.9 12.9 122 174-316 118-239 (390)
68 PRK11188 rrmJ 23S rRNA methylt 99.2 5.4E-10 1.2E-14 103.2 16.9 123 177-328 50-178 (209)
69 TIGR02085 meth_trns_rumB 23S r 99.2 7.3E-11 1.6E-15 118.2 11.9 83 175-261 230-312 (374)
70 PRK11873 arsM arsenite S-adeno 99.2 2.8E-10 6.1E-15 108.9 15.4 113 173-313 72-184 (272)
71 PRK13943 protein-L-isoaspartat 99.2 9.5E-11 2.1E-15 114.8 12.1 85 172-258 74-158 (322)
72 TIGR00091 tRNA (guanine-N(7)-) 99.2 5.4E-11 1.2E-15 108.4 9.7 116 178-312 16-132 (194)
73 PRK15001 SAM-dependent 23S rib 99.2 2.1E-10 4.6E-15 114.5 13.1 124 164-312 214-340 (378)
74 PLN02781 Probable caffeoyl-CoA 99.2 1.4E-10 3.1E-15 108.8 11.2 116 169-313 59-179 (234)
75 PLN02476 O-methyltransferase 99.2 9.6E-11 2.1E-15 112.1 10.1 122 165-315 105-231 (278)
76 PRK01544 bifunctional N5-gluta 99.2 4.1E-10 8.9E-15 116.9 15.6 141 178-334 138-287 (506)
77 PF01170 UPF0020: Putative RNA 99.2 2.8E-10 6.1E-15 102.6 12.4 122 171-314 21-151 (179)
78 COG2813 RsmC 16S RNA G1207 met 99.2 1.8E-09 4E-14 103.4 18.2 128 164-317 144-271 (300)
79 COG2264 PrmA Ribosomal protein 99.2 4.1E-10 8.9E-15 108.3 13.3 138 164-338 146-286 (300)
80 PRK05031 tRNA (uracil-5-)-meth 99.2 1.4E-10 3.1E-15 115.6 10.1 81 179-262 207-301 (362)
81 PLN02244 tocopherol O-methyltr 99.1 3.5E-10 7.6E-15 111.9 12.7 108 177-314 117-225 (340)
82 PRK10909 rsmD 16S rRNA m(2)G96 99.1 4.1E-10 8.9E-15 103.1 11.4 80 177-259 52-131 (199)
83 PRK11036 putative S-adenosyl-L 99.1 9.1E-10 2E-14 104.5 13.9 108 177-314 43-151 (255)
84 PF02475 Met_10: Met-10+ like- 99.1 1.6E-10 3.6E-15 105.6 8.2 101 176-310 99-200 (200)
85 PRK04338 N(2),N(2)-dimethylgua 99.1 3.6E-10 7.9E-15 113.3 11.0 110 170-313 48-158 (382)
86 PRK00517 prmA ribosomal protei 99.1 1.7E-09 3.8E-14 102.4 15.1 119 176-338 117-236 (250)
87 TIGR02143 trmA_only tRNA (urac 99.1 3E-10 6.6E-15 112.9 10.3 81 179-262 198-292 (353)
88 TIGR00406 prmA ribosomal prote 99.1 1.2E-09 2.7E-14 105.6 14.1 135 165-338 144-281 (288)
89 COG4122 Predicted O-methyltran 99.1 5.5E-10 1.2E-14 103.2 10.6 121 167-316 48-170 (219)
90 PRK11207 tellurite resistance 99.1 1.7E-09 3.7E-14 98.8 13.8 113 170-312 22-134 (197)
91 PF06325 PrmA: Ribosomal prote 99.1 2.7E-10 5.8E-15 110.2 8.7 134 165-338 146-281 (295)
92 PF03602 Cons_hypoth95: Conser 99.1 4.2E-10 9.1E-15 101.8 8.2 80 178-259 42-124 (183)
93 PRK08317 hypothetical protein; 99.1 3.2E-09 6.9E-14 98.3 14.1 115 171-314 12-126 (241)
94 TIGR00477 tehB tellurite resis 99.0 2.1E-09 4.5E-14 98.1 12.3 126 155-312 8-133 (195)
95 PRK15451 tRNA cmo(5)U34 methyl 99.0 3.7E-09 8.1E-14 100.0 13.9 111 176-314 54-166 (247)
96 PLN02396 hexaprenyldihydroxybe 99.0 4.1E-09 8.9E-14 103.4 14.5 107 175-312 128-235 (322)
97 PLN03075 nicotianamine synthas 99.0 2.9E-09 6.2E-14 102.7 12.5 108 178-312 123-233 (296)
98 PRK01683 trans-aconitate 2-met 99.0 3.3E-09 7.1E-14 100.6 12.8 107 171-312 24-130 (258)
99 COG2520 Predicted methyltransf 99.0 2.2E-09 4.8E-14 105.2 11.4 123 176-332 186-312 (341)
100 COG0293 FtsJ 23S rRNA methylas 99.0 2.4E-09 5.3E-14 97.5 10.4 125 176-329 43-173 (205)
101 PF02353 CMAS: Mycolic acid cy 99.0 2.6E-09 5.6E-14 102.5 11.1 118 169-317 53-171 (273)
102 COG2227 UbiG 2-polyprenyl-3-me 99.0 9.3E-10 2E-14 101.9 7.6 106 177-314 58-163 (243)
103 PHA03411 putative methyltransf 99.0 8.2E-09 1.8E-13 98.3 14.1 148 175-337 61-211 (279)
104 PF08241 Methyltransf_11: Meth 99.0 6.8E-10 1.5E-14 87.7 5.8 95 183-310 1-95 (95)
105 COG0742 N6-adenine-specific me 99.0 3.2E-09 6.9E-14 95.5 10.7 81 177-259 42-124 (187)
106 PRK14103 trans-aconitate 2-met 99.0 2.8E-09 6E-14 101.1 10.6 104 171-311 22-125 (255)
107 cd02440 AdoMet_MTases S-adenos 99.0 6.8E-09 1.5E-13 81.7 11.2 103 181-311 1-103 (107)
108 TIGR00308 TRM1 tRNA(guanine-26 99.0 1.3E-09 2.9E-14 108.8 8.7 102 180-313 46-147 (374)
109 PTZ00098 phosphoethanolamine N 99.0 5.5E-09 1.2E-13 99.8 12.3 115 169-313 43-157 (263)
110 TIGR00095 RNA methyltransferas 99.0 3.6E-09 7.8E-14 96.2 10.4 80 178-259 49-131 (189)
111 PLN02672 methionine S-methyltr 99.0 4.9E-09 1.1E-13 116.0 13.4 150 179-337 119-300 (1082)
112 COG2230 Cfa Cyclopropane fatty 99.0 7.7E-09 1.7E-13 98.8 13.0 131 169-330 63-194 (283)
113 PF09445 Methyltransf_15: RNA 99.0 2.6E-09 5.6E-14 94.4 8.9 85 180-267 1-87 (163)
114 PRK10258 biotin biosynthesis p 99.0 2.7E-09 5.7E-14 100.9 9.5 116 162-313 26-141 (251)
115 PF13649 Methyltransf_25: Meth 99.0 3.1E-09 6.6E-14 86.3 8.5 99 182-306 1-101 (101)
116 PF01596 Methyltransf_3: O-met 99.0 5.8E-10 1.2E-14 102.6 4.7 108 178-314 45-157 (205)
117 KOG2915 tRNA(1-methyladenosine 99.0 7.9E-09 1.7E-13 96.8 12.2 94 165-258 92-186 (314)
118 PRK00216 ubiE ubiquinone/menaq 98.9 1.4E-08 3.1E-13 94.3 13.9 117 171-315 44-161 (239)
119 KOG2904 Predicted methyltransf 98.9 1.3E-08 2.9E-13 95.4 12.9 144 178-329 148-300 (328)
120 PF01269 Fibrillarin: Fibrilla 98.9 3.5E-08 7.7E-13 90.7 14.9 140 167-337 56-209 (229)
121 PLN02336 phosphoethanolamine N 98.9 1E-08 2.2E-13 105.9 12.6 113 172-315 260-372 (475)
122 TIGR00740 methyltransferase, p 98.9 3E-08 6.4E-13 93.1 14.7 109 177-313 52-162 (239)
123 PHA03412 putative methyltransf 98.9 3.6E-09 7.9E-14 98.6 8.3 138 178-337 49-199 (241)
124 smart00828 PKS_MT Methyltransf 98.9 4.8E-08 1E-12 90.5 15.4 129 180-338 1-142 (224)
125 PRK06922 hypothetical protein; 98.9 1.9E-08 4E-13 105.6 13.9 127 173-315 413-540 (677)
126 smart00650 rADc Ribosomal RNA 98.9 1.8E-08 3.9E-13 89.7 11.6 82 171-259 6-87 (169)
127 TIGR00452 methyltransferase, p 98.9 3.3E-08 7.2E-13 96.6 14.3 115 174-319 117-232 (314)
128 PRK00050 16S rRNA m(4)C1402 me 98.9 4.9E-09 1.1E-13 101.4 8.0 92 170-263 11-104 (296)
129 TIGR02716 C20_methyl_CrtF C-20 98.9 7.8E-08 1.7E-12 93.7 16.5 121 170-320 141-262 (306)
130 PF02384 N6_Mtase: N-6 DNA Met 98.9 2.7E-09 5.8E-14 104.1 6.1 169 158-333 26-207 (311)
131 PRK12335 tellurite resistance 98.9 3.8E-08 8.3E-13 95.1 13.5 103 178-311 120-222 (287)
132 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 3.9E-08 8.4E-13 90.4 12.4 114 173-316 34-147 (223)
133 PRK04457 spermidine synthase; 98.8 2.3E-08 5E-13 95.5 10.6 130 177-331 65-195 (262)
134 PRK11705 cyclopropane fatty ac 98.8 2.9E-08 6.4E-13 99.8 11.4 111 170-314 159-269 (383)
135 PLN02589 caffeoyl-CoA O-methyl 98.8 2.6E-08 5.5E-13 94.2 9.9 117 168-313 69-191 (247)
136 PRK15068 tRNA mo(5)U34 methylt 98.8 4.2E-08 9.1E-13 96.4 11.8 111 173-314 117-228 (322)
137 PF02390 Methyltransf_4: Putat 98.8 2.6E-08 5.6E-13 91.1 9.3 133 179-336 18-156 (195)
138 PF03848 TehB: Tellurite resis 98.8 2.9E-08 6.2E-13 90.2 9.1 118 163-312 16-133 (192)
139 KOG1270 Methyltransferases [Co 98.8 3.7E-08 7.9E-13 92.2 9.9 114 175-329 86-206 (282)
140 PLN02490 MPBQ/MSBQ methyltrans 98.8 8.8E-08 1.9E-12 94.5 13.2 129 177-338 112-254 (340)
141 PRK05134 bifunctional 3-demeth 98.8 1.5E-07 3.3E-12 87.8 14.1 112 172-314 42-153 (233)
142 COG2521 Predicted archaeal met 98.8 5.5E-09 1.2E-13 96.0 4.1 142 171-337 127-274 (287)
143 TIGR01983 UbiG ubiquinone bios 98.7 1.9E-07 4.2E-12 86.3 14.1 107 178-314 45-151 (224)
144 PRK00811 spermidine synthase; 98.7 9.7E-08 2.1E-12 92.2 12.3 113 178-314 76-193 (283)
145 PF01728 FtsJ: FtsJ-like methy 98.7 2.5E-08 5.5E-13 89.6 7.7 134 175-338 20-164 (181)
146 PRK11727 23S rRNA mA1618 methy 98.7 1.8E-07 4E-12 91.5 13.4 85 178-263 114-203 (321)
147 PF08242 Methyltransf_12: Meth 98.7 2.8E-09 6E-14 86.0 0.3 99 183-308 1-99 (99)
148 PLN02336 phosphoethanolamine N 98.7 1.6E-07 3.4E-12 97.0 13.3 120 168-316 27-146 (475)
149 PLN02585 magnesium protoporphy 98.7 2.6E-07 5.7E-12 90.4 13.9 70 178-255 144-218 (315)
150 TIGR02021 BchM-ChlM magnesium 98.7 2.6E-07 5.6E-12 85.6 13.2 72 176-255 53-125 (219)
151 KOG2187 tRNA uracil-5-methyltr 98.7 3.6E-08 7.7E-13 99.8 7.7 115 172-318 377-495 (534)
152 TIGR02072 BioC biotin biosynth 98.7 1.2E-07 2.5E-12 88.0 10.7 102 178-312 34-135 (240)
153 KOG1099 SAM-dependent methyltr 98.7 5.2E-08 1.1E-12 89.2 7.6 117 180-325 43-173 (294)
154 COG0220 Predicted S-adenosylme 98.7 9.6E-08 2.1E-12 89.1 9.4 122 180-326 50-172 (227)
155 PF05401 NodS: Nodulation prot 98.7 1.2E-07 2.7E-12 85.6 9.5 110 172-313 37-147 (201)
156 TIGR03438 probable methyltrans 98.7 3.7E-07 8.1E-12 88.9 13.4 111 177-313 62-178 (301)
157 smart00138 MeTrc Methyltransfe 98.6 2.5E-07 5.4E-12 88.5 11.7 110 178-313 99-243 (264)
158 TIGR00417 speE spermidine synt 98.6 4.6E-07 1E-11 86.9 13.0 115 178-316 72-190 (270)
159 PRK01581 speE spermidine synth 98.6 4.8E-07 1E-11 89.5 13.0 120 179-323 151-277 (374)
160 PRK10742 putative methyltransf 98.6 3.5E-07 7.6E-12 85.9 11.5 89 167-259 75-174 (250)
161 PRK11088 rrmA 23S rRNA methylt 98.6 3E-07 6.5E-12 88.2 11.4 72 177-255 84-157 (272)
162 PTZ00338 dimethyladenosine tra 98.6 1E-07 2.2E-12 92.5 8.0 88 169-263 27-115 (294)
163 PRK03612 spermidine synthase; 98.6 2.7E-07 5.9E-12 96.4 11.3 136 177-335 296-439 (521)
164 COG4106 Tam Trans-aconitate me 98.6 1.5E-07 3.2E-12 85.8 7.3 103 176-313 28-130 (257)
165 PLN02366 spermidine synthase 98.6 8.1E-07 1.8E-11 86.7 12.7 112 177-311 90-205 (308)
166 PRK14896 ksgA 16S ribosomal RN 98.6 2E-07 4.3E-12 88.8 8.2 84 168-260 19-102 (258)
167 COG1889 NOP1 Fibrillarin-like 98.5 1.9E-06 4.1E-11 77.9 12.8 146 160-337 51-211 (231)
168 COG0116 Predicted N6-adenine-s 98.5 1.3E-06 2.9E-11 86.5 12.6 144 149-312 156-344 (381)
169 KOG4589 Cell division protein 98.5 1.6E-06 3.4E-11 77.5 11.7 134 177-339 68-210 (232)
170 TIGR03840 TMPT_Se_Te thiopurin 98.5 1.6E-06 3.4E-11 80.4 12.1 108 177-315 33-155 (213)
171 KOG1271 Methyltransferases [Ge 98.5 8.5E-07 1.8E-11 78.9 9.7 123 181-324 70-193 (227)
172 PRK00274 ksgA 16S ribosomal RN 98.5 2.2E-07 4.7E-12 89.3 6.5 85 170-262 34-118 (272)
173 PRK01544 bifunctional N5-gluta 98.5 1.4E-06 3E-11 90.7 12.9 117 177-312 346-462 (506)
174 PRK11783 rlmL 23S rRNA m(2)G24 98.5 5.4E-06 1.2E-10 89.7 17.3 111 149-259 154-313 (702)
175 KOG1663 O-methyltransferase [S 98.5 1.5E-06 3.3E-11 80.1 10.8 120 165-313 60-184 (237)
176 TIGR03587 Pse_Me-ase pseudamin 98.4 2.4E-06 5.2E-11 78.6 11.9 72 176-256 41-112 (204)
177 PRK07580 Mg-protoporphyrin IX 98.4 3.9E-06 8.4E-11 77.8 12.9 72 177-256 62-134 (230)
178 KOG3420 Predicted RNA methylas 98.4 4.5E-07 9.7E-12 77.8 5.3 85 177-269 47-131 (185)
179 PRK06202 hypothetical protein; 98.4 2.2E-06 4.8E-11 80.1 10.5 77 175-256 57-136 (232)
180 PRK13255 thiopurine S-methyltr 98.4 5.4E-06 1.2E-10 77.1 12.5 74 175-255 34-122 (218)
181 TIGR00006 S-adenosyl-methyltra 98.4 1.4E-06 3.1E-11 84.5 8.6 90 171-262 13-105 (305)
182 KOG2899 Predicted methyltransf 98.3 1.8E-06 4E-11 80.0 8.6 110 178-312 58-209 (288)
183 PRK05785 hypothetical protein; 98.3 2.1E-06 4.6E-11 80.2 9.2 66 178-255 51-116 (226)
184 PF08003 Methyltransf_9: Prote 98.3 7.8E-06 1.7E-10 78.7 12.6 116 174-320 111-227 (315)
185 PF13489 Methyltransf_23: Meth 98.3 1.9E-06 4.1E-11 74.8 7.8 99 176-315 20-118 (161)
186 PF07021 MetW: Methionine bios 98.3 5.3E-06 1.2E-10 74.9 10.6 71 176-255 11-81 (193)
187 PF01861 DUF43: Protein of unk 98.3 4.2E-06 9.2E-11 78.0 10.2 130 178-338 44-176 (243)
188 KOG1596 Fibrillarin and relate 98.3 1.9E-06 4.2E-11 79.6 7.6 128 167-325 139-277 (317)
189 COG4076 Predicted RNA methylas 98.3 1.4E-06 3E-11 77.9 5.8 100 179-309 33-132 (252)
190 TIGR02987 met_A_Alw26 type II 98.2 4.1E-06 8.9E-11 87.7 9.9 86 178-263 31-126 (524)
191 TIGR00755 ksgA dimethyladenosi 98.2 4.1E-06 8.8E-11 79.5 8.6 81 170-259 21-104 (253)
192 KOG1661 Protein-L-isoaspartate 98.2 7.2E-06 1.6E-10 74.6 8.7 86 171-258 73-171 (237)
193 KOG3191 Predicted N6-DNA-methy 98.1 5E-05 1.1E-09 67.7 12.7 140 179-333 44-186 (209)
194 PF02005 TRM: N2,N2-dimethylgu 98.1 7.3E-06 1.6E-10 82.2 7.5 105 178-314 49-155 (377)
195 KOG2671 Putative RNA methylase 98.1 4.2E-06 9.1E-11 81.1 5.4 139 167-313 197-355 (421)
196 COG0030 KsgA Dimethyladenosine 98.1 1.9E-05 4E-10 74.9 9.3 89 169-263 21-109 (259)
197 PF02527 GidB: rRNA small subu 98.0 2.7E-05 5.8E-10 70.5 9.4 98 181-312 51-148 (184)
198 KOG2730 Methylase [General fun 98.0 2.5E-06 5.5E-11 78.0 2.5 87 178-267 94-183 (263)
199 COG4976 Predicted methyltransf 98.0 1.5E-05 3.2E-10 73.5 7.5 129 176-338 123-263 (287)
200 PLN02823 spermine synthase 98.0 5E-05 1.1E-09 75.1 11.8 78 179-258 104-185 (336)
201 TIGR02081 metW methionine bios 97.9 6.4E-05 1.4E-09 68.3 10.2 72 177-258 12-84 (194)
202 COG0286 HsdM Type I restrictio 97.9 2.8E-05 6.1E-10 80.7 8.6 168 158-329 166-346 (489)
203 PF10294 Methyltransf_16: Puta 97.9 3.5E-05 7.6E-10 69.0 8.0 120 177-325 44-168 (173)
204 KOG1541 Predicted protein carb 97.9 9.4E-05 2E-09 68.0 10.7 141 159-330 29-174 (270)
205 PRK13256 thiopurine S-methyltr 97.9 8.1E-05 1.8E-09 69.5 10.5 113 176-315 41-166 (226)
206 PF01564 Spermine_synth: Sperm 97.9 4.7E-05 1E-09 72.1 9.1 132 172-329 71-206 (246)
207 PF12147 Methyltransf_20: Puta 97.9 0.00014 3.1E-09 69.5 12.2 129 178-331 135-266 (311)
208 KOG4300 Predicted methyltransf 97.9 5.8E-05 1.3E-09 68.7 8.8 118 180-330 78-197 (252)
209 COG3963 Phospholipid N-methylt 97.9 0.00011 2.4E-09 64.7 10.0 114 172-314 42-158 (194)
210 KOG1499 Protein arginine N-met 97.9 8.5E-05 1.8E-09 72.6 10.1 112 178-317 60-172 (346)
211 PF01795 Methyltransf_5: MraW 97.9 6.8E-06 1.5E-10 79.8 2.4 91 170-262 12-106 (310)
212 PF03291 Pox_MCEL: mRNA cappin 97.9 6.6E-05 1.4E-09 74.1 9.3 112 178-314 62-188 (331)
213 TIGR00478 tly hemolysin TlyA f 97.8 3.5E-05 7.6E-10 72.1 6.8 44 177-222 74-118 (228)
214 PF00891 Methyltransf_2: O-met 97.8 0.0002 4.3E-09 67.2 11.2 114 172-322 94-209 (241)
215 PF05219 DREV: DREV methyltran 97.8 0.0001 2.3E-09 69.5 8.7 94 178-311 94-187 (265)
216 KOG1098 Putative SAM-dependent 97.8 1.7E-05 3.8E-10 81.8 3.8 110 176-311 42-157 (780)
217 PF13578 Methyltransf_24: Meth 97.8 1.1E-05 2.3E-10 65.9 1.8 100 183-310 1-103 (106)
218 PF05185 PRMT5: PRMT5 arginine 97.7 0.00013 2.8E-09 74.8 9.7 120 179-325 187-312 (448)
219 PRK11760 putative 23S rRNA C24 97.7 0.00011 2.3E-09 72.2 8.2 169 79-259 73-280 (357)
220 COG0357 GidB Predicted S-adeno 97.7 0.00013 2.8E-09 67.5 8.1 74 179-256 68-142 (215)
221 COG0275 Predicted S-adenosylme 97.7 0.00013 2.9E-09 70.0 7.9 92 170-262 15-109 (314)
222 PF04816 DUF633: Family of unk 97.5 0.001 2.2E-08 61.2 11.4 121 182-338 1-122 (205)
223 PF06962 rRNA_methylase: Putat 97.5 0.00032 6.9E-09 60.5 7.2 107 205-329 1-112 (140)
224 cd00315 Cyt_C5_DNA_methylase C 97.5 0.00019 4E-09 69.1 6.5 79 181-267 2-80 (275)
225 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.0003 6.5E-09 69.3 7.6 117 163-311 34-153 (380)
226 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00035 7.5E-09 66.7 7.7 86 169-259 21-107 (262)
227 KOG2361 Predicted methyltransf 97.5 8.7E-05 1.9E-09 69.0 3.2 74 181-255 74-150 (264)
228 PF05724 TPMT: Thiopurine S-me 97.4 0.00065 1.4E-08 63.2 9.0 114 174-315 33-158 (218)
229 COG0421 SpeE Spermidine syntha 97.4 0.00045 9.8E-09 66.6 8.0 123 170-318 69-196 (282)
230 KOG1253 tRNA methyltransferase 97.4 0.00014 3.1E-09 73.7 4.6 108 176-314 107-217 (525)
231 TIGR01444 fkbM_fam methyltrans 97.4 0.00049 1.1E-08 58.8 7.4 58 181-239 1-58 (143)
232 KOG0820 Ribosomal RNA adenine 97.4 0.00071 1.5E-08 64.1 8.4 125 171-316 51-180 (315)
233 PF10354 DUF2431: Domain of un 97.4 0.01 2.3E-07 52.8 15.3 140 185-338 3-150 (166)
234 PF06080 DUF938: Protein of un 97.3 0.0017 3.6E-08 59.5 10.2 128 178-331 25-164 (204)
235 PF04445 SAM_MT: Putative SAM- 97.3 0.00052 1.1E-08 64.2 6.8 86 168-257 63-159 (234)
236 PLN02232 ubiquinone biosynthes 97.3 0.00075 1.6E-08 59.5 6.8 81 207-315 1-84 (160)
237 COG3897 Predicted methyltransf 97.2 0.00037 8E-09 63.0 4.4 70 178-255 79-148 (218)
238 PF08123 DOT1: Histone methyla 97.2 0.0022 4.8E-08 59.1 9.5 85 172-259 36-132 (205)
239 TIGR03439 methyl_EasF probable 97.2 0.003 6.5E-08 62.0 10.8 127 177-329 75-211 (319)
240 KOG0024 Sorbitol dehydrogenase 97.2 0.0023 5E-08 62.1 9.5 120 155-313 146-274 (354)
241 PRK04148 hypothetical protein; 97.2 0.002 4.4E-08 55.2 8.1 69 176-255 14-83 (134)
242 TIGR00497 hsdM type I restrict 97.1 0.0014 3.1E-08 68.3 8.4 171 157-331 194-377 (501)
243 KOG3010 Methyltransferase [Gen 97.0 0.0023 5E-08 59.7 7.8 75 176-255 30-106 (261)
244 PRK10611 chemotaxis methyltran 97.0 0.0054 1.2E-07 59.4 9.9 108 180-312 117-262 (287)
245 KOG1500 Protein arginine N-met 96.9 0.0083 1.8E-07 58.5 10.6 74 178-257 177-251 (517)
246 COG1189 Predicted rRNA methyla 96.9 0.0035 7.6E-08 58.5 7.4 74 178-258 79-153 (245)
247 PF00145 DNA_methylase: C-5 cy 96.9 0.0055 1.2E-07 59.4 9.4 132 181-335 2-137 (335)
248 PF03059 NAS: Nicotianamine sy 96.8 0.0054 1.2E-07 59.0 8.3 105 180-311 122-229 (276)
249 PF05971 Methyltransf_10: Prot 96.8 0.0057 1.2E-07 59.4 8.5 147 179-333 103-275 (299)
250 COG1352 CheR Methylase of chem 96.7 0.013 2.9E-07 56.1 10.6 107 180-312 98-241 (268)
251 KOG1975 mRNA cap methyltransfe 96.7 0.0042 9.1E-08 60.3 7.1 133 167-331 108-250 (389)
252 PF05148 Methyltransf_8: Hypot 96.7 0.0092 2E-07 54.8 8.7 111 178-338 72-183 (219)
253 PF01739 CheR: CheR methyltran 96.7 0.0074 1.6E-07 55.2 8.1 110 178-313 31-176 (196)
254 KOG3115 Methyltransferase-like 96.6 0.0049 1.1E-07 56.2 6.4 135 179-335 61-204 (249)
255 PF11599 AviRa: RRNA methyltra 96.6 0.034 7.3E-07 51.3 11.4 116 178-311 51-213 (246)
256 PF05891 Methyltransf_PK: AdoM 96.6 0.0051 1.1E-07 56.8 6.2 135 178-340 55-201 (218)
257 PF13679 Methyltransf_32: Meth 96.5 0.009 2E-07 51.5 7.3 61 177-237 24-90 (141)
258 PRK00536 speE spermidine synth 96.4 0.047 1E-06 52.2 11.6 108 170-317 65-176 (262)
259 COG0500 SmtA SAM-dependent met 96.3 0.12 2.5E-06 42.0 12.3 108 182-319 52-162 (257)
260 COG2384 Predicted SAM-dependen 96.2 0.13 2.8E-06 47.6 13.3 125 177-337 15-140 (226)
261 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.2 0.052 1.1E-06 51.7 11.0 138 177-338 55-237 (256)
262 PF09243 Rsm22: Mitochondrial 96.0 0.029 6.2E-07 54.0 8.6 47 180-226 35-81 (274)
263 KOG1709 Guanidinoacetate methy 96.0 0.057 1.2E-06 49.8 9.8 114 177-321 100-213 (271)
264 KOG2782 Putative SAM dependent 95.9 0.0037 8E-08 57.5 1.8 94 170-264 35-133 (303)
265 PHA01634 hypothetical protein 95.9 0.043 9.2E-07 46.5 7.9 73 178-257 28-100 (156)
266 COG1568 Predicted methyltransf 95.9 0.058 1.3E-06 51.5 9.6 104 153-259 126-231 (354)
267 COG1064 AdhP Zn-dependent alco 95.8 0.084 1.8E-06 52.2 10.5 75 175-258 163-238 (339)
268 KOG3178 Hydroxyindole-O-methyl 95.7 0.068 1.5E-06 52.6 9.5 101 180-316 179-279 (342)
269 PF04989 CmcI: Cephalosporin h 95.6 0.017 3.6E-07 53.1 4.7 99 158-258 11-120 (206)
270 COG4798 Predicted methyltransf 95.4 0.28 6E-06 44.7 11.6 43 171-213 41-83 (238)
271 TIGR00675 dcm DNA-methyltransf 95.3 0.026 5.6E-07 55.4 5.3 78 182-268 1-78 (315)
272 KOG1227 Putative methyltransfe 95.3 0.008 1.7E-07 57.8 1.5 75 178-256 194-269 (351)
273 COG4262 Predicted spermidine s 95.3 0.13 2.9E-06 51.0 9.8 138 177-337 288-433 (508)
274 COG0270 Dcm Site-specific DNA 95.3 0.037 8E-07 54.6 6.2 82 180-268 4-86 (328)
275 KOG2078 tRNA modification enzy 95.1 0.011 2.4E-07 59.3 1.8 64 176-242 247-312 (495)
276 PRK11524 putative methyltransf 94.8 0.06 1.3E-06 52.0 6.2 46 177-225 207-252 (284)
277 COG1063 Tdh Threonine dehydrog 94.5 0.097 2.1E-06 52.1 7.1 103 176-314 166-271 (350)
278 PRK10458 DNA cytosine methylas 94.5 0.13 2.8E-06 53.2 8.1 84 179-266 88-186 (467)
279 PF01555 N6_N4_Mtase: DNA meth 94.4 0.08 1.7E-06 48.2 5.7 43 176-221 189-231 (231)
280 PRK01747 mnmC bifunctional tRN 94.4 0.15 3.3E-06 55.0 8.6 128 178-338 57-225 (662)
281 PRK11524 putative methyltransf 94.3 0.083 1.8E-06 51.0 5.8 75 229-315 7-82 (284)
282 PF03141 Methyltransf_29: Puta 94.0 0.086 1.9E-06 54.3 5.3 101 181-316 120-223 (506)
283 PRK09880 L-idonate 5-dehydroge 93.6 0.93 2E-05 44.5 11.9 99 175-313 166-267 (343)
284 KOG4174 Uncharacterized conser 93.5 6.9 0.00015 37.2 16.5 146 178-337 56-214 (282)
285 PF10237 N6-adenineMlase: Prob 93.4 0.45 9.8E-06 42.2 8.3 109 177-328 24-135 (162)
286 PRK13699 putative methylase; P 93.3 0.33 7.1E-06 45.4 7.8 91 232-337 3-93 (227)
287 KOG3045 Predicted RNA methylas 93.3 0.3 6.5E-06 46.4 7.2 108 179-338 181-289 (325)
288 PF07279 DUF1442: Protein of u 93.1 0.71 1.5E-05 42.7 9.3 77 179-257 42-123 (218)
289 PF00107 ADH_zinc_N: Zinc-bind 93.0 0.097 2.1E-06 43.6 3.3 87 189-315 2-92 (130)
290 PRK12939 short chain dehydroge 92.9 1.7 3.7E-05 39.9 11.9 78 178-257 6-92 (250)
291 KOG3987 Uncharacterized conser 92.8 0.037 8.1E-07 50.7 0.6 39 179-220 113-151 (288)
292 cd08237 ribitol-5-phosphate_DH 92.8 0.86 1.9E-05 44.8 10.2 95 175-313 160-257 (341)
293 cd08283 FDH_like_1 Glutathione 92.7 0.39 8.4E-06 48.1 7.7 49 173-222 179-228 (386)
294 PRK09424 pntA NAD(P) transhydr 92.0 2 4.3E-05 45.0 12.1 122 96-231 81-212 (509)
295 COG2933 Predicted SAM-dependen 92.0 0.3 6.6E-06 46.4 5.5 70 176-257 209-278 (358)
296 PRK13699 putative methylase; P 91.8 0.43 9.3E-06 44.6 6.3 49 176-227 161-209 (227)
297 PRK12429 3-hydroxybutyrate deh 91.6 3 6.5E-05 38.5 11.9 78 179-258 4-90 (258)
298 PRK09186 flagellin modificatio 91.6 3.1 6.8E-05 38.4 12.0 79 178-257 3-91 (256)
299 TIGR02822 adh_fam_2 zinc-bindi 91.4 1.6 3.5E-05 42.7 10.3 92 174-311 161-253 (329)
300 PRK08213 gluconate 5-dehydroge 91.3 5.2 0.00011 37.2 13.3 130 178-314 11-150 (259)
301 cd08230 glucose_DH Glucose deh 91.3 1.4 3.1E-05 43.4 9.8 94 176-312 170-269 (355)
302 PRK08945 putative oxoacyl-(acy 91.3 3 6.6E-05 38.4 11.6 81 177-258 10-101 (247)
303 COG3129 Predicted SAM-dependen 91.2 0.31 6.7E-06 45.6 4.6 84 177-261 77-165 (292)
304 TIGR03366 HpnZ_proposed putati 91.1 0.99 2.1E-05 43.0 8.3 100 174-312 116-218 (280)
305 PRK07326 short chain dehydroge 90.9 2.9 6.3E-05 38.1 11.0 77 178-257 5-90 (237)
306 TIGR03451 mycoS_dep_FDH mycoth 90.8 1.6 3.5E-05 43.1 9.7 98 175-312 173-276 (358)
307 PRK08339 short chain dehydroge 90.6 7.8 0.00017 36.4 13.8 79 178-257 7-93 (263)
308 KOG1269 SAM-dependent methyltr 90.5 0.39 8.5E-06 48.1 4.9 85 171-259 103-189 (364)
309 PLN02740 Alcohol dehydrogenase 90.3 1.8 3.9E-05 43.2 9.6 51 174-230 194-246 (381)
310 PRK06194 hypothetical protein; 90.3 5.2 0.00011 37.8 12.4 83 179-263 6-97 (287)
311 KOG3201 Uncharacterized conser 90.2 0.42 9.1E-06 42.4 4.3 78 178-255 29-109 (201)
312 PRK05786 fabG 3-ketoacyl-(acyl 90.1 6 0.00013 36.0 12.3 78 178-258 4-90 (238)
313 PRK06181 short chain dehydroge 90.0 5.6 0.00012 37.0 12.3 75 181-257 3-86 (263)
314 KOG1562 Spermidine synthase [A 89.9 0.94 2E-05 43.9 6.7 133 150-309 97-233 (337)
315 PLN03209 translocon at the inn 89.8 6.6 0.00014 41.8 13.5 83 174-257 75-167 (576)
316 PRK05867 short chain dehydroge 89.8 4.7 0.0001 37.4 11.4 79 178-258 8-95 (253)
317 PRK05599 hypothetical protein; 89.7 6.3 0.00014 36.6 12.3 76 181-257 2-85 (246)
318 TIGR03201 dearomat_had 6-hydro 89.7 1.9 4.2E-05 42.3 9.2 51 174-230 162-213 (349)
319 PRK06949 short chain dehydroge 89.6 6.7 0.00014 36.2 12.4 79 178-258 8-95 (258)
320 PRK10309 galactitol-1-phosphat 89.6 2.2 4.8E-05 41.8 9.5 98 175-312 157-260 (347)
321 PRK07831 short chain dehydroge 89.5 8.8 0.00019 35.7 13.2 81 178-258 16-106 (262)
322 PRK12937 short chain dehydroge 89.5 6.4 0.00014 36.0 12.0 126 178-316 4-143 (245)
323 cd08254 hydroxyacyl_CoA_DH 6-h 89.4 2.2 4.8E-05 41.0 9.2 97 175-311 162-262 (338)
324 PRK07533 enoyl-(acyl carrier p 89.3 6 0.00013 37.0 11.9 79 178-258 9-97 (258)
325 cd08239 THR_DH_like L-threonin 89.2 1.5 3.2E-05 42.8 7.9 100 174-311 159-261 (339)
326 PRK13394 3-hydroxybutyrate deh 89.0 7.6 0.00017 35.9 12.3 81 178-260 6-95 (262)
327 PRK07677 short chain dehydroge 88.9 12 0.00026 34.6 13.5 79 179-259 1-88 (252)
328 PRK06172 short chain dehydroge 88.7 10 0.00022 35.0 12.9 78 178-257 6-92 (253)
329 PRK06139 short chain dehydroge 88.4 8.1 0.00018 38.0 12.5 80 178-259 6-94 (330)
330 PRK07454 short chain dehydroge 88.3 9.6 0.00021 34.9 12.3 77 179-257 6-91 (241)
331 PRK08594 enoyl-(acyl carrier p 88.2 7.5 0.00016 36.4 11.7 81 178-258 6-96 (257)
332 TIGR02825 B4_12hDH leukotriene 88.1 3.4 7.4E-05 40.0 9.6 52 174-230 134-186 (325)
333 PRK09242 tropinone reductase; 88.1 13 0.00028 34.4 13.2 128 178-315 8-149 (257)
334 PRK07523 gluconate 5-dehydroge 88.1 14 0.0003 34.2 13.4 80 178-259 9-97 (255)
335 PRK07576 short chain dehydroge 88.0 18 0.00039 33.9 14.2 124 178-313 8-144 (264)
336 PRK07832 short chain dehydroge 88.0 6.6 0.00014 36.9 11.3 73 186-258 6-87 (272)
337 PRK07109 short chain dehydroge 88.0 10 0.00022 37.2 13.0 80 178-259 7-95 (334)
338 PRK07062 short chain dehydroge 87.9 15 0.00032 34.2 13.5 80 178-258 7-96 (265)
339 PRK06940 short chain dehydroge 87.8 12 0.00027 35.3 13.1 75 181-258 4-85 (275)
340 PRK07904 short chain dehydroge 87.7 8.7 0.00019 35.9 11.8 80 177-257 6-95 (253)
341 COG0677 WecC UDP-N-acetyl-D-ma 87.6 7.9 0.00017 39.2 11.6 120 188-334 16-150 (436)
342 PF07942 N2227: N2227-like pro 87.5 13 0.00029 35.6 12.9 45 177-224 55-99 (270)
343 cd08238 sorbose_phosphate_red 87.5 4.7 0.0001 40.7 10.5 47 175-222 172-222 (410)
344 PRK07774 short chain dehydroge 87.5 9.7 0.00021 34.9 11.9 80 178-259 5-93 (250)
345 PRK08063 enoyl-(acyl carrier p 87.3 15 0.00033 33.6 13.1 80 178-259 3-92 (250)
346 PF07091 FmrO: Ribosomal RNA m 87.2 2.3 5E-05 40.3 7.4 73 178-255 105-177 (251)
347 PRK08267 short chain dehydroge 87.2 7.5 0.00016 36.1 11.0 75 181-259 3-87 (260)
348 PRK08085 gluconate 5-dehydroge 87.1 18 0.00038 33.4 13.5 80 178-259 8-96 (254)
349 PRK06914 short chain dehydroge 87.0 17 0.00038 34.0 13.5 82 179-261 3-93 (280)
350 PLN02896 cinnamyl-alcohol dehy 86.9 10 0.00023 37.2 12.4 82 178-262 9-92 (353)
351 PRK07666 fabG 3-ketoacyl-(acyl 86.9 20 0.00044 32.6 13.6 79 179-259 7-94 (239)
352 TIGR02415 23BDH acetoin reduct 86.9 11 0.00024 34.6 11.9 80 182-263 3-91 (254)
353 PRK07102 short chain dehydroge 86.7 16 0.00034 33.5 12.8 77 181-258 3-85 (243)
354 PRK06505 enoyl-(acyl carrier p 86.6 17 0.00038 34.3 13.3 78 178-257 6-93 (271)
355 PRK08251 short chain dehydroge 86.6 24 0.00052 32.3 14.0 81 179-260 2-92 (248)
356 PRK12829 short chain dehydroge 86.6 16 0.00034 33.7 12.9 80 175-258 7-95 (264)
357 PF04672 Methyltransf_19: S-ad 86.5 7 0.00015 37.5 10.3 113 180-315 70-193 (267)
358 PLN02827 Alcohol dehydrogenase 86.5 3.3 7.1E-05 41.4 8.6 51 174-230 189-241 (378)
359 PRK07890 short chain dehydroge 86.3 18 0.00039 33.3 13.0 78 178-257 4-90 (258)
360 PF03721 UDPG_MGDP_dh_N: UDP-g 86.2 2 4.3E-05 38.8 6.2 118 188-331 7-138 (185)
361 KOG1197 Predicted quinone oxid 86.2 2.3 5E-05 40.5 6.7 75 175-254 143-220 (336)
362 PRK08324 short chain dehydroge 86.1 11 0.00023 41.0 12.9 122 178-313 421-558 (681)
363 KOG1501 Arginine N-methyltrans 86.0 1.5 3.2E-05 44.7 5.6 54 181-236 69-123 (636)
364 PRK08589 short chain dehydroge 86.0 19 0.00042 33.8 13.2 78 178-258 5-91 (272)
365 PF03492 Methyltransf_7: SAM d 85.9 6.5 0.00014 39.0 10.2 77 179-255 17-113 (334)
366 cd08281 liver_ADH_like1 Zinc-d 85.9 3.4 7.3E-05 41.0 8.3 98 174-312 187-290 (371)
367 PRK12826 3-ketoacyl-(acyl-carr 85.3 24 0.00051 32.2 13.3 79 179-259 6-93 (251)
368 PRK07097 gluconate 5-dehydroge 85.3 24 0.00051 32.9 13.4 80 178-259 9-97 (265)
369 PRK06197 short chain dehydroge 85.3 20 0.00043 34.3 13.2 80 178-258 15-104 (306)
370 PRK06182 short chain dehydroge 85.2 9.4 0.0002 35.8 10.7 72 179-258 3-83 (273)
371 TIGR03589 PseB UDP-N-acetylglu 85.1 15 0.00031 35.9 12.2 76 179-258 4-83 (324)
372 COG5459 Predicted rRNA methyla 85.1 1.2 2.6E-05 44.2 4.3 45 180-225 115-159 (484)
373 PRK05993 short chain dehydroge 85.1 12 0.00027 35.2 11.5 71 179-257 4-84 (277)
374 PRK08340 glucose-1-dehydrogena 85.1 19 0.00041 33.4 12.6 75 181-258 2-85 (259)
375 TIGR01963 PHB_DH 3-hydroxybuty 85.1 27 0.00059 31.9 13.6 78 181-260 3-89 (255)
376 KOG1201 Hydroxysteroid 17-beta 85.0 17 0.00038 35.3 12.2 119 178-311 37-171 (300)
377 PRK08643 acetoin reductase; Va 84.8 22 0.00047 32.8 12.8 76 180-257 3-87 (256)
378 PRK08415 enoyl-(acyl carrier p 84.6 18 0.0004 34.2 12.4 79 178-258 4-92 (274)
379 PRK06701 short chain dehydroge 84.5 18 0.00039 34.6 12.4 124 178-313 45-182 (290)
380 PRK05876 short chain dehydroge 84.4 27 0.0006 33.0 13.5 80 178-259 5-93 (275)
381 PRK06124 gluconate 5-dehydroge 84.3 30 0.00065 31.8 13.5 79 178-258 10-97 (256)
382 PRK06603 enoyl-(acyl carrier p 83.9 21 0.00045 33.4 12.4 79 178-258 7-95 (260)
383 PRK07984 enoyl-(acyl carrier p 83.7 27 0.00059 32.9 13.1 79 178-258 5-93 (262)
384 PRK12742 oxidoreductase; Provi 83.4 19 0.00041 32.7 11.6 118 178-313 5-132 (237)
385 PLN02668 indole-3-acetate carb 83.4 16 0.00035 36.9 11.8 44 179-222 64-121 (386)
386 PRK07060 short chain dehydroge 83.2 16 0.00036 33.2 11.2 77 178-261 8-89 (245)
387 PRK05653 fabG 3-ketoacyl-(acyl 83.0 33 0.00071 31.0 13.1 78 179-258 5-91 (246)
388 PRK06079 enoyl-(acyl carrier p 83.0 14 0.0003 34.4 10.6 77 178-258 6-92 (252)
389 PRK07889 enoyl-(acyl carrier p 82.8 13 0.00028 34.7 10.5 76 178-257 6-93 (256)
390 TIGR02818 adh_III_F_hyde S-(hy 82.7 5.7 0.00012 39.4 8.4 51 174-230 181-233 (368)
391 PLN03154 putative allyl alcoho 82.7 8.9 0.00019 37.8 9.6 51 175-230 155-207 (348)
392 PRK07814 short chain dehydroge 82.7 26 0.00057 32.6 12.5 78 178-257 9-95 (263)
393 PRK07063 short chain dehydroge 82.5 34 0.00074 31.6 13.1 79 178-257 6-94 (260)
394 PRK09135 pteridine reductase; 82.4 28 0.00061 31.6 12.4 127 178-311 5-141 (249)
395 PRK08159 enoyl-(acyl carrier p 82.3 25 0.00055 33.2 12.3 79 178-258 9-97 (272)
396 PF05430 Methyltransf_30: S-ad 82.1 0.82 1.8E-05 38.7 1.7 77 231-338 33-109 (124)
397 COG0604 Qor NADPH:quinone redu 82.1 9.2 0.0002 37.7 9.4 103 175-315 139-244 (326)
398 TIGR03206 benzo_BadH 2-hydroxy 82.1 38 0.00082 30.9 13.2 79 179-259 3-90 (250)
399 cd08278 benzyl_alcohol_DH Benz 81.8 10 0.00022 37.5 9.7 95 175-311 183-284 (365)
400 PRK05872 short chain dehydroge 81.8 21 0.00046 34.1 11.7 78 178-258 8-94 (296)
401 cd08294 leukotriene_B4_DH_like 81.8 8.6 0.00019 36.9 9.1 50 174-230 139-191 (329)
402 cd05285 sorbitol_DH Sorbitol d 81.8 7.2 0.00016 38.0 8.6 101 173-311 157-264 (343)
403 PF00106 adh_short: short chai 81.8 22 0.00047 30.3 10.8 78 182-261 3-92 (167)
404 cd08295 double_bond_reductase_ 81.6 9.2 0.0002 37.2 9.3 53 174-230 147-200 (338)
405 cd08293 PTGR2 Prostaglandin re 81.5 8.5 0.00018 37.3 9.0 51 176-231 150-205 (345)
406 PRK12384 sorbitol-6-phosphate 81.3 27 0.00059 32.2 12.0 79 179-258 2-90 (259)
407 PRK05717 oxidoreductase; Valid 81.2 26 0.00056 32.4 11.8 77 178-259 9-94 (255)
408 PRK07231 fabG 3-ketoacyl-(acyl 81.2 32 0.00069 31.4 12.3 78 179-259 5-91 (251)
409 PRK09291 short chain dehydroge 81.2 40 0.00088 30.9 13.1 77 180-258 3-82 (257)
410 cd08277 liver_alcohol_DH_like 80.9 9.3 0.0002 37.8 9.1 50 175-230 181-232 (365)
411 PRK06935 2-deoxy-D-gluconate 3 80.7 32 0.00069 31.8 12.3 78 178-258 14-100 (258)
412 cd00401 AdoHcyase S-adenosyl-L 80.5 11 0.00024 38.5 9.5 48 177-229 200-247 (413)
413 PRK06196 oxidoreductase; Provi 80.3 35 0.00076 32.9 12.8 76 178-259 25-109 (315)
414 PRK06179 short chain dehydroge 80.2 16 0.00034 34.1 10.0 70 179-258 4-82 (270)
415 PRK05866 short chain dehydroge 80.1 45 0.00098 31.9 13.4 77 179-257 40-125 (293)
416 cd08301 alcohol_DH_plants Plan 80.1 9.5 0.00021 37.7 8.9 51 174-230 183-235 (369)
417 PLN02989 cinnamyl-alcohol dehy 79.9 32 0.0007 33.0 12.4 80 178-258 4-86 (325)
418 cd08242 MDR_like Medium chain 79.8 18 0.00039 34.6 10.5 69 174-255 151-220 (319)
419 PRK12859 3-ketoacyl-(acyl-carr 79.7 41 0.00089 31.1 12.7 82 178-260 5-107 (256)
420 PRK06077 fabG 3-ketoacyl-(acyl 79.6 39 0.00085 30.8 12.4 124 179-315 6-143 (252)
421 PRK06482 short chain dehydroge 79.6 23 0.00049 33.2 11.0 75 181-260 4-87 (276)
422 PRK05855 short chain dehydroge 79.6 37 0.0008 35.3 13.6 81 179-261 315-404 (582)
423 PRK07067 sorbitol dehydrogenas 79.3 26 0.00056 32.4 11.1 75 179-258 6-89 (257)
424 KOG0023 Alcohol dehydrogenase, 79.1 24 0.00053 34.8 10.8 58 176-238 179-237 (360)
425 PRK08278 short chain dehydroge 79.1 31 0.00066 32.5 11.7 126 178-314 5-150 (273)
426 cd08231 MDR_TM0436_like Hypoth 79.0 14 0.0003 36.3 9.6 49 177-231 176-226 (361)
427 TIGR02622 CDP_4_6_dhtase CDP-g 78.4 28 0.00061 34.0 11.6 77 179-258 4-84 (349)
428 PRK07775 short chain dehydroge 78.3 59 0.0013 30.5 13.4 77 180-258 11-96 (274)
429 PRK06125 short chain dehydroge 78.3 56 0.0012 30.1 13.9 79 178-257 6-89 (259)
430 PRK08862 short chain dehydroge 78.1 45 0.00097 30.6 12.2 78 178-257 4-91 (227)
431 PRK06113 7-alpha-hydroxysteroi 78.0 53 0.0012 30.2 12.8 80 178-259 10-98 (255)
432 KOG1205 Predicted dehydrogenas 77.5 39 0.00086 32.7 11.8 83 178-261 11-103 (282)
433 PRK12746 short chain dehydroge 77.4 52 0.0011 30.1 12.5 122 179-313 6-147 (254)
434 TIGR02819 fdhA_non_GSH formald 77.3 17 0.00037 36.6 9.8 110 174-311 181-298 (393)
435 PRK12743 oxidoreductase; Provi 77.2 52 0.0011 30.3 12.6 77 179-257 2-88 (256)
436 PRK06997 enoyl-(acyl carrier p 77.1 37 0.00079 31.8 11.5 79 178-258 5-93 (260)
437 PRK06198 short chain dehydroge 76.9 60 0.0013 29.8 12.9 127 178-314 5-145 (260)
438 cd08285 NADP_ADH NADP(H)-depen 76.9 16 0.00035 35.6 9.3 96 175-311 163-265 (351)
439 TIGR02632 RhaD_aldol-ADH rhamn 76.9 54 0.0012 35.7 14.1 81 178-259 413-503 (676)
440 PRK08303 short chain dehydroge 76.9 72 0.0016 30.8 13.8 78 178-257 7-103 (305)
441 PRK07478 short chain dehydroge 76.8 61 0.0013 29.8 13.3 79 179-259 6-93 (254)
442 PF05050 Methyltransf_21: Meth 76.8 5.5 0.00012 34.0 5.4 39 184-222 1-42 (167)
443 PLN00198 anthocyanidin reducta 76.7 44 0.00094 32.4 12.3 82 174-257 4-88 (338)
444 PRK08703 short chain dehydroge 76.5 48 0.001 30.2 11.9 80 178-258 5-96 (239)
445 PLN02662 cinnamyl-alcohol dehy 76.4 45 0.00098 31.8 12.2 80 179-259 4-86 (322)
446 PRK06101 short chain dehydroge 76.3 46 0.00099 30.4 11.8 71 182-258 4-80 (240)
447 PRK07985 oxidoreductase; Provi 76.2 60 0.0013 31.0 12.9 123 178-312 48-185 (294)
448 cd05188 MDR Medium chain reduc 76.0 23 0.0005 32.3 9.7 42 177-220 133-175 (271)
449 PRK09072 short chain dehydroge 76.0 44 0.00094 31.0 11.7 77 179-258 5-89 (263)
450 cd05278 FDH_like Formaldehyde 75.9 17 0.00037 35.1 9.2 43 175-220 164-209 (347)
451 PRK10538 malonic semialdehyde 75.9 30 0.00064 31.9 10.4 68 186-257 6-82 (248)
452 PRK08690 enoyl-(acyl carrier p 75.9 37 0.00079 31.7 11.2 79 178-258 5-93 (261)
453 PRK06500 short chain dehydroge 75.8 60 0.0013 29.5 12.4 75 179-258 6-89 (249)
454 PRK05650 short chain dehydroge 75.6 66 0.0014 29.9 12.9 76 181-258 2-86 (270)
455 PRK05565 fabG 3-ketoacyl-(acyl 75.6 40 0.00087 30.5 11.2 79 179-259 5-93 (247)
456 PRK07806 short chain dehydroge 75.5 64 0.0014 29.4 12.9 119 179-312 6-134 (248)
457 PRK06138 short chain dehydroge 75.5 64 0.0014 29.3 13.2 79 179-260 5-92 (252)
458 TIGR01832 kduD 2-deoxy-D-gluco 75.4 51 0.0011 30.0 11.9 77 178-258 4-89 (248)
459 PRK08993 2-deoxy-D-gluconate 3 75.4 47 0.001 30.7 11.7 75 179-257 10-93 (253)
460 PRK08265 short chain dehydroge 75.3 58 0.0013 30.2 12.4 75 179-258 6-89 (261)
461 cd08300 alcohol_DH_class_III c 75.2 20 0.00044 35.3 9.7 51 174-230 182-234 (368)
462 cd08236 sugar_DH NAD(P)-depend 75.0 18 0.0004 34.9 9.1 102 173-311 154-257 (343)
463 PRK10083 putative oxidoreducta 74.8 27 0.00058 33.7 10.2 51 174-230 156-209 (339)
464 TIGR03026 NDP-sugDHase nucleot 74.7 25 0.00055 35.6 10.3 117 188-330 7-137 (411)
465 PRK07024 short chain dehydroge 74.7 61 0.0013 29.9 12.3 76 180-258 3-87 (257)
466 COG4221 Short-chain alcohol de 74.6 79 0.0017 30.0 12.8 75 179-257 6-89 (246)
467 cd08232 idonate-5-DH L-idonate 74.4 20 0.00042 34.7 9.1 51 175-230 162-213 (339)
468 PLN02702 L-idonate 5-dehydroge 74.1 27 0.00059 34.3 10.2 52 174-232 177-231 (364)
469 PF02254 TrkA_N: TrkA-N domain 73.9 5.6 0.00012 32.2 4.4 65 187-258 4-71 (116)
470 cd08298 CAD2 Cinnamyl alcohol 73.7 30 0.00066 33.1 10.3 93 174-312 163-256 (329)
471 PRK05854 short chain dehydroge 73.6 85 0.0019 30.3 13.4 80 178-258 13-102 (313)
472 KOG0022 Alcohol dehydrogenase, 73.4 7.7 0.00017 38.1 5.7 57 170-230 184-240 (375)
473 PRK07370 enoyl-(acyl carrier p 73.3 28 0.0006 32.5 9.6 80 178-258 5-96 (258)
474 TIGR01202 bchC 2-desacetyl-2-h 73.3 18 0.0004 34.8 8.6 41 177-220 143-186 (308)
475 PLN02586 probable cinnamyl alc 73.2 21 0.00045 35.3 9.2 50 176-230 181-231 (360)
476 cd08234 threonine_DH_like L-th 73.2 19 0.0004 34.6 8.6 75 173-255 154-232 (334)
477 PRK12748 3-ketoacyl-(acyl-carr 73.1 73 0.0016 29.3 12.4 77 179-257 5-103 (256)
478 cd08296 CAD_like Cinnamyl alco 73.0 19 0.00041 34.8 8.7 50 174-229 159-209 (333)
479 PRK05693 short chain dehydroge 72.8 39 0.00084 31.6 10.5 71 181-259 3-82 (274)
480 PF13561 adh_short_C2: Enoyl-( 72.5 14 0.00031 33.9 7.3 114 189-312 5-133 (241)
481 PLN02178 cinnamyl-alcohol dehy 72.4 19 0.00041 36.0 8.7 48 177-230 177-226 (375)
482 PRK07041 short chain dehydroge 72.3 74 0.0016 28.6 12.5 71 187-259 4-79 (230)
483 PLN02514 cinnamyl-alcohol dehy 71.9 29 0.00062 34.2 9.8 46 177-229 179-227 (357)
484 PF05711 TylF: Macrocin-O-meth 71.6 9.6 0.00021 36.2 5.9 124 178-332 75-230 (248)
485 PRK06128 oxidoreductase; Provi 71.5 94 0.002 29.6 13.1 123 178-312 54-191 (300)
486 PF01555 N6_N4_Mtase: DNA meth 71.2 4.1 9E-05 36.8 3.3 79 250-337 1-80 (231)
487 COG2961 ComJ Protein involved 71.2 42 0.00092 32.0 9.9 113 187-330 95-209 (279)
488 COG0300 DltE Short-chain dehyd 71.2 1E+02 0.0022 29.7 13.8 86 177-266 4-98 (265)
489 cd08255 2-desacetyl-2-hydroxye 71.0 27 0.00059 32.5 9.0 47 173-220 92-139 (277)
490 PRK10675 UDP-galactose-4-epime 71.0 58 0.0013 31.3 11.6 77 181-258 2-82 (338)
491 PRK06180 short chain dehydroge 71.0 92 0.002 29.1 12.8 76 179-259 4-88 (277)
492 PLN00015 protochlorophyllide r 70.9 54 0.0012 31.5 11.3 72 186-258 3-84 (308)
493 cd08286 FDH_like_ADH2 formalde 70.7 22 0.00047 34.5 8.5 49 175-229 163-213 (345)
494 cd08265 Zn_ADH3 Alcohol dehydr 70.7 27 0.00059 34.7 9.3 50 175-230 200-251 (384)
495 PRK07825 short chain dehydroge 70.7 91 0.002 29.0 12.6 74 179-258 5-87 (273)
496 PRK12481 2-deoxy-D-gluconate 3 70.6 89 0.0019 28.8 12.3 77 178-258 7-92 (251)
497 PRK12744 short chain dehydroge 70.5 88 0.0019 28.8 12.3 124 179-315 8-148 (257)
498 COG1062 AdhC Zn-dependent alco 70.4 11 0.00023 37.5 6.1 115 170-320 177-293 (366)
499 PF11899 DUF3419: Protein of u 70.2 11 0.00025 38.0 6.4 56 165-223 22-77 (380)
500 PRK07791 short chain dehydroge 70.0 1E+02 0.0022 29.2 13.3 79 178-258 5-101 (286)
No 1
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=8.2e-82 Score=610.35 Aligned_cols=373 Identities=68% Similarity=1.040 Sum_probs=354.1
Q ss_pred cccccccCcccCCChHHHhHhcCCCCChhHHHHHHHHHHHHHHhcccccccCCCHHHHHHHhhhhHHHHhcChHHHHHHH
Q 016730 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGAL 82 (384)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ri~~~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~wl~~~l 82 (384)
+|+.++...+.+|+.+++++ ...++|++.+..|+.+.+.++.+++.....++.++++...+..+++.+|+|..+++..+
T Consensus 67 ~~~~~~~~~l~lp~~~~~~~-~~~~P~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~ 145 (460)
T KOG1122|consen 67 TNTFEEGDPLLLPTLEEEEE-KDSVPDLQNVDLRIVELVPVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKL 145 (460)
T ss_pred hccccccccccCcccccccc-cccCCccchhhHHhhhhhhhhcchhcccccccchhhHHHHHHhcccceechHHHHHHHh
Confidence 35667788999999885544 44555999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEE
Q 016730 83 VEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 162 (384)
.+.++..++.+++++++.++|+++|.||+|..+.++...|..+|+...|.+.|+..|+.++++.++++++|+|++|+|.+
T Consensus 146 ~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~L 225 (460)
T KOG1122|consen 146 MELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYML 225 (460)
T ss_pred cccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceee
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
|+.+|++++++|+||||+|||||||||||||+|||++|+++|.|+|+|.+..|++.++.|++|+|++|.+++++|+..++
T Consensus 226 Q~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 226 QNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred ccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 243 -~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
..+. .+||+||+||||||+|++.|++.++|.++..++.++..+|+++|.+|++++ ++||+||||||||+++|||
T Consensus 306 ~~~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv----~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 306 EKEFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV----KAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ccccC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc----cCCcEEEEEeeecchhhhH
Confidence 3343 489999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHhcC-CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 322 AVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 322 ~vv~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+||+|+|+++ .++++|.++.+|.+| .|++++|+|++....|++||.|++||||+|||+|.
T Consensus 381 ~vV~yaL~K~p~~kL~p~~~~iG~~G--~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~ 441 (460)
T KOG1122|consen 381 AVVDYALKKRPEVKLVPTGLDIGGEG--RFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKA 441 (460)
T ss_pred HHHHHHHHhCCceEeccccccCCCCC--cccCcccCcchhheeeecCcccCCchHHHHHHHhh
Confidence 9999999987 899999999999998 78899999999999999999999999999999873
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-72 Score=556.83 Aligned_cols=302 Identities=41% Similarity=0.646 Sum_probs=269.7
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCC
Q 016730 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (384)
Q Consensus 70 ~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (384)
..|++|+|++++|.+.||.+++++++++++.++|+++|||+++.+++++.+.|...|+...+. .+.+.++. +....++
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-i~~~~~~ 127 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKP-WVLDEVLR-IEASGPI 127 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccC-CccccEEE-ecCCCCc
Confidence 569999999999999999888999999999999999999999999999999999998877765 44445555 4566788
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCC
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV 228 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~ 228 (384)
..+++|.+|+|++||.+||+++.+|+|+||++||||||||||||+||+++|.+.+ .|+|+|++++|++.+++|++|+|+
T Consensus 128 ~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 128 GRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred ccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999855 459999999999999999999999
Q ss_pred ceEEEEecCCCCcccccCCC-CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 229 TNTIVCNYDGNELPKVLGLN-TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 229 ~~v~~~~~D~~~~~~~~~~~-~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
.|+.+++.|++.++.....+ +||+||+||||||+|++||||+++|.++++++..++.+|++||.+|+++| ||||+
T Consensus 208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l----k~GG~ 283 (355)
T COG0144 208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL----KPGGV 283 (355)
T ss_pred CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCE
Confidence 99999999998776544333 59999999999999999999999999999999999999999999999997 99999
Q ss_pred EEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 308 lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
|||||||++++|||+||+++|+++ ++++++....++. ++... . ....+++|++||.|++||||+|+|+|.
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGL----G-SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred EEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-ccccc----c-cccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 999999999999999999999875 8999887655432 11110 0 345678999999998899999999985
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.6e-69 Score=549.65 Aligned_cols=298 Identities=37% Similarity=0.585 Sum_probs=266.1
Q ss_pred hcChHHHHHHHHHhCCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecC---CC
Q 016730 72 YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS---QV 147 (384)
Q Consensus 72 ~~~p~wl~~~l~~~~~~-~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~ 147 (384)
..+|.|++++|+..||. +++++|++++++++|.++|||++|++++++.+.|.+.|+.++++ +|++.++++... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~-p~~~~g~~~~~~~~~~~ 80 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIERDDEDAL 80 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeEC-CCCCceEEEecCccccC
Confidence 35899999999999996 68999999999999999999999999999999999999999998 899999986432 23
Q ss_pred CCCCCcccccceEEEeCCcCcchhhhc--CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 148 ~~~~~~~~~~G~~~~Qd~ss~l~~~~L--~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
.++.+|+|.+|.|++||+|||+++.+| ++++|++|||+||||||||+||+++|++.|.|+|+|++++|++.+++|++|
T Consensus 81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 226 ~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
+|+.|+.+++.|+..+...+. ..||+||+||||||+|++||+|+++|.|+++++..++.+|++||.+|+++| |||
T Consensus 161 ~G~~nv~v~~~D~~~~~~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L----kpG 235 (470)
T PRK11933 161 CGVSNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPG 235 (470)
T ss_pred cCCCeEEEEeCchhhhhhhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 999999999999988754442 579999999999999999999999999999999999999999999999996 999
Q ss_pred cEEEEEeccCCccccHHHHHHHHhcC-C-CEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
|+|||||||++++|||+||+++|+++ + ++++++...+ +++.. .....+++|++||.+++||||+|+|+|.
T Consensus 236 G~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 236 GTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLF--PGAEK------ALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccc--ccccc------ccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999876 4 4455442111 11110 0113457999999999999999999985
No 4
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4e-65 Score=516.43 Aligned_cols=301 Identities=25% Similarity=0.409 Sum_probs=269.0
Q ss_pred hhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecC
Q 016730 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (384)
Q Consensus 66 ~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 145 (384)
+.++..||+|.||+++|.+.||.++++++++++++++|+++|||++|++++++.+.|.+.|+.+++. +|++.++.+...
T Consensus 126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 204 (431)
T PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPG-KHSPFSLIVRKL 204 (431)
T ss_pred hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEEC-CCCCceEEEcCC
Confidence 4578899999999999999999999999999999999999999999999999999999999999888 789988876543
Q ss_pred CCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 146 ~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
..++..+++|.+|++++||.+|++++.++++++|++|||+||||||||+++++++++.+.|+|+|++++|++.+++|+++
T Consensus 205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 226 ~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
+|++++.+++.|+..++... .+.||+|++||||||+|+++++|+++|.++++++..++.+|+++|.+++++| |||
T Consensus 285 ~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpG 359 (431)
T PRK14903 285 LKLSSIEIKIADAERLTEYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL----EKG 359 (431)
T ss_pred cCCCeEEEEECchhhhhhhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 99999999999998775333 3679999999999999999999999999999999999999999999999996 999
Q ss_pred cEEEEEeccCCccccHHHHHHHHhc-CCCEEeecCCCC---CCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEE
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKK-RDVKLVPCGLDF---GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVY 381 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~-~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~ 381 (384)
|+|||||||++++|||+||++||++ ++++++++.... +.++. + ...++|++|+. ++||||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~P~~-~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI-------W---DGYGFLMLPDE-TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc-------c---CCCcEEECcCC-CCCcEEEEEEE
Confidence 9999999999999999999998875 578877653111 11110 0 11237999985 79999999999
Q ss_pred ec
Q 016730 382 LD 383 (384)
Q Consensus 382 ~~ 383 (384)
|.
T Consensus 429 k~ 430 (431)
T PRK14903 429 KM 430 (431)
T ss_pred eC
Confidence 85
No 5
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3e-65 Score=518.76 Aligned_cols=320 Identities=31% Similarity=0.470 Sum_probs=279.2
Q ss_pred HHHHHHHHHHhcccccccC----------CCHHH-----HHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCC
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSRKE-----YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEK 100 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~~~-----~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~ 100 (384)
=|+|+|++++.+......+ |..+. .-......++++||+|.||+++|.+.||.++++++++++++
T Consensus 96 avneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~ 175 (434)
T PRK14901 96 AVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQ 175 (434)
T ss_pred HHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCC
Confidence 4788888888776543331 11110 00111234788999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCc
Q 016730 101 PRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180 (384)
Q Consensus 101 ~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~ 180 (384)
++|+++|||++|++++++.+.|.+.|+.++++ +|++.++.+.....++..+|+|.+|++++||.+|++++.++++++|+
T Consensus 176 ~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~ 254 (434)
T PRK14901 176 PPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGE 254 (434)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcC
Confidence 99999999999999999999999999999988 79999988754334588999999999999999999999999999999
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEEcCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAP 258 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~VllDaP 258 (384)
+|||+|||||+||+++++++++.|.|+|+|++++|++.+++|++++|++++.++++|+..++... ..+.||+|++|||
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaP 334 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAP 334 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCC
Confidence 99999999999999999999888899999999999999999999999999999999998765311 1368999999999
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEee
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVP 337 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~ 337 (384)
|||+|+++|+|+++|.++++++..++.+|+++|.+|+++| ||||+|||||||++++|||++|.++++++ ++++++
T Consensus 335 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----kpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~ 410 (434)
T PRK14901 335 CSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----KPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEP 410 (434)
T ss_pred CCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecC
Confidence 9999999999999999999999999999999999999996 99999999999999999999999998865 676543
Q ss_pred cCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 338 CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
. ..+++||.|++||||+|+|+|.
T Consensus 411 ~-----------------------~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 411 P-----------------------KQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred C-----------------------CCccCCCCCCCCcEEEEEEEeC
Confidence 1 0127999999999999999986
No 6
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=8.2e-67 Score=501.71 Aligned_cols=281 Identities=43% Similarity=0.657 Sum_probs=246.6
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCcccccc-EEEecCCCCCCCCcccccceEEEeCCcCcchhh
Q 016730 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG-LVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (384)
Q Consensus 94 ~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~ 172 (384)
||++++.++|+++|||++|++++++.+.|.+.|+.+++. +|.+.. ..+.....++..++.|++|+|++||.+|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-ccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 689999999999999999999999999999999999888 677776 334455678899999999999999999999999
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+|+|++|++|||+||||||||+|++++|.+.|.|+|+|++.+|+..+++|++|+|+.++.+++.|++.+........||+
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 99999999999999999999999999999899999999999999999999999999999998889887743333346999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~- 331 (384)
||+||||||+|+++|+|+++|.++++++..++.+|++||++|+++++..+||||+|||||||++++|||+||++||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999984333499999999999999999999999999876
Q ss_pred CCEEeecCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEE
Q 016730 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVY 381 (384)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~ 381 (384)
+++++++....+.+++..+ +...+++|++||.+++||||+|+||
T Consensus 240 ~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 240 DFELVPIPLPEPPPGFKSY------PIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp SEEEECCESSTCEEESSGG------CTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred CcEEEeccccccccccccc------cCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 8999987665544433322 3356789999999999999999997
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=2.2e-63 Score=504.16 Aligned_cols=324 Identities=29% Similarity=0.427 Sum_probs=275.4
Q ss_pred HHHHHHHHHhccccccc----------CCCHHHHHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEE
Q 016730 37 IKEIVRVLSNFKDLSQK----------GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICL 106 (384)
Q Consensus 37 i~~~v~~~~~~~~~~~~----------~r~~~~~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 106 (384)
|+|+|++++.+...... .|..+.+.+ ....++.+||+|.||+++|.+.|+ ++++++++++++++|+|+
T Consensus 91 inEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~-~~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 168 (426)
T TIGR00563 91 VAETVEGAKAIKRKGLKGLVNGVLRRFQREQEELLA-EFNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWL 168 (426)
T ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHhhcchhhcc-hhHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEE
Confidence 78899999887655443 122222111 124588899999999999999996 678899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEec
Q 016730 107 RTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMA 186 (384)
Q Consensus 107 RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~c 186 (384)
|||+.|++++++.+.|.+.|+.+.+. +|.+.++.+ ..+..+..+++|.+|+|++||.+|++++.+|++++|++|||+|
T Consensus 169 Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlc 246 (426)
T TIGR00563 169 RINRTKHSRDEWLALLAEAGMKGFPH-DLAPDAVRL-ETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDAC 246 (426)
T ss_pred EEcCCcCCHHHHHHHHHhcCCceeeC-CCCCCeEEE-CCCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeC
Confidence 99999999999999999999998887 788888875 4455688999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC
Q 016730 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (384)
Q Consensus 187 agpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~ 265 (384)
||||+||++++++++ .++|+|+|++++|++.+++|++++|+.. +.+..+|+.....+...+.||+|++||||||+|++
T Consensus 247 ag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 247 AAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVI 325 (426)
T ss_pred CCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCccc
Confidence 999999999999987 6899999999999999999999999972 33355666554432234689999999999999999
Q ss_pred CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCC
Q 016730 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (384)
Q Consensus 266 ~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~ 344 (384)
+++|+++|.++++++.+++.+|+++|.+|+++| ||||+|||||||++++|||+||+++++++ +++++..+..
T Consensus 326 ~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L----kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~--- 398 (426)
T TIGR00563 326 RRHPDIKWLRKPRDIAELAELQSEILDAIWPLL----KTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTP--- 398 (426)
T ss_pred ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCc---
Confidence 999999999999999999999999999999996 99999999999999999999999999866 6665432110
Q ss_pred CCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+. ...+++|++||.+++||||+|+|+|.
T Consensus 399 ~~-----------~~~~~~~~~P~~~~~dGff~a~l~k~ 426 (426)
T TIGR00563 399 EQ-----------VRDGGLQILPHAEEGDGFFYAKLIKK 426 (426)
T ss_pred cc-----------cCCCcEEECCCCCCCCCeEEEEEEeC
Confidence 00 01346899999999999999999984
No 8
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.1e-61 Score=488.44 Aligned_cols=324 Identities=30% Similarity=0.468 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHhccccccc----------CCCHHHHHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCC
Q 016730 34 QRRIKEIVRVLSNFKDLSQK----------GTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRP 103 (384)
Q Consensus 34 ~~ri~~~v~~~~~~~~~~~~----------~r~~~~~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~p 103 (384)
+.-|+|+|++++.+...+.. .+.++.+......+++++||+|.||+++|.+.|| +++.++++++++++|
T Consensus 93 ~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~ 171 (427)
T PRK10901 93 HAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPP 171 (427)
T ss_pred chHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCC
Confidence 34678999999887665443 1222322221234678899999999999999996 789999999999999
Q ss_pred eEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEE
Q 016730 104 ICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183 (384)
Q Consensus 104 ~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VL 183 (384)
+++|||++|++++++.+.|.+.|+.+++. +|.+.++.+ ..+.++..+++|++|++++||.+|++++.++++++|++||
T Consensus 172 ~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VL 249 (427)
T PRK10901 172 MWLRVNRRHHSRDAYLALLAEAGIEAFPH-AVGPDAIRL-ETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVL 249 (427)
T ss_pred eEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCeEEE-CCCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEE
Confidence 99999999999999999999999999988 799999876 4455688999999999999999999999999999999999
Q ss_pred EeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCC
Q 016730 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263 (384)
Q Consensus 184 D~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G 263 (384)
|+|||||++|+++++.+++ +.|+|+|+++++++.+++|++++|+. +.++++|+..++.+...++||.|++|||||++|
T Consensus 250 DlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G 327 (427)
T PRK10901 250 DACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATG 327 (427)
T ss_pred EeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCEEEECCCCCccc
Confidence 9999999999999999865 79999999999999999999999986 678899998765443346799999999999999
Q ss_pred cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCC
Q 016730 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDF 342 (384)
Q Consensus 264 ~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~ 342 (384)
+++++|+++|.++++++.++...|+++|.+|+++| ||||++||||||++++|||++|..+++++ ++++++...
T Consensus 328 ~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L----kpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~-- 401 (427)
T PRK10901 328 VIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL----KPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT-- 401 (427)
T ss_pred ccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC--
Confidence 99999999999999999999999999999999996 99999999999999999999999888765 788766321
Q ss_pred CCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 343 GRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
+ ...++|++||.+++||||+|+|+|.
T Consensus 402 --~-------------~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 402 --P-------------QQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred --C-------------CCCceEECCCCCCCCCeEEEEEEEC
Confidence 0 1235899999999999999999984
No 9
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.3e-60 Score=482.54 Aligned_cols=332 Identities=29% Similarity=0.443 Sum_probs=285.1
Q ss_pred HHHHHHHHHHhcccccccC----------CCHHH---HHHHhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCC
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSRKE---YVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPR 102 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~~~---~~~~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~~~ 102 (384)
=|+|+|++++.+..++..+ ++... -.......++++||+|.|++++|.+.||.+++.++++++++++
T Consensus 98 ~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~ 177 (444)
T PRK14902 98 AVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPP 177 (444)
T ss_pred eHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCC
Confidence 4667788777766544331 11100 0011123578899999999999999999999999999999999
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceE
Q 016730 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERV 182 (384)
Q Consensus 103 p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~V 182 (384)
|+|+|||+.|.+++++.+.|.+.|+.+++. +|.+.++.+.. ..+..+++|.+|.+++||.+|++++.++++++|++|
T Consensus 178 ~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~V 254 (444)
T PRK14902 178 KASIRVNTLKISVEELIEKLEEEGYEVEES-LLSPEALVIEK--GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTV 254 (444)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHcCceeEEc-CCCCCeEEEeC--CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEE
Confidence 999999999999999999999999999888 89999988643 468899999999999999999999999999999999
Q ss_pred EEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
||+|||||++|+++++.+++.+.|+|+|+++.+++.+++|++++|+.++.++++|+..+...+. +.||+|++||||||+
T Consensus 255 LDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~ 333 (444)
T PRK14902 255 LDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGL 333 (444)
T ss_pred EEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCC
Confidence 9999999999999999986678999999999999999999999999999999999987653332 679999999999999
Q ss_pred CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCC
Q 016730 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLD 341 (384)
Q Consensus 263 G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~ 341 (384)
|+++++|+++|.+++.++..+..+|+++|.+|+++| ||||+|||||||++++|||.+|.++++++ +++++++..+
T Consensus 334 G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~ 409 (444)
T PRK14902 334 GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL----KKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHE 409 (444)
T ss_pred eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccc
Confidence 999999999999999999999999999999999996 99999999999999999999999988876 6888876433
Q ss_pred CCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 342 FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
. ++.. ..+...+++|++||.+++||||+|+|+|.
T Consensus 410 ~--~~~~------~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 410 K--PDEL------VYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred c--cccc------cccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 2 1100 00123467999999999999999999985
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2e-59 Score=477.47 Aligned_cols=330 Identities=24% Similarity=0.368 Sum_probs=274.3
Q ss_pred HHHHHHHHHHhcccccccC----------CCH---HHHHH--HhhhhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCC
Q 016730 36 RIKEIVRVLSNFKDLSQKG----------TSR---KEYVQ--QLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEK 100 (384)
Q Consensus 36 ri~~~v~~~~~~~~~~~~~----------r~~---~~~~~--~~~~~~~~~~~~p~wl~~~l~~~~~~~~~~~~~~~~~~ 100 (384)
-|+|+|++++.+...+..+ +.. +++.. .....++.+||+|.||+++|.+.||++++.++++++++
T Consensus 98 ~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~ 177 (445)
T PRK14904 98 AVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQ 177 (445)
T ss_pred eHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCC
Confidence 3678888888776554431 111 11110 11235788999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCc
Q 016730 101 PRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180 (384)
Q Consensus 101 ~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~ 180 (384)
++|+++|||+++.+++++.+.|...|+.+.+. ++. ++.+ ... .....|.|..|.+++||++|++++.++++++|+
T Consensus 178 ~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~-~~~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~ 252 (445)
T PRK14904 178 APLFGFRINRLKTTPEKFLAAPADASVTFEKS-GLP--NFFL-SKD-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGS 252 (445)
T ss_pred CCCceeEeCCCCCCHHHHHHHHHhCCCceEEc-Ccc--eEEE-ecc-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999987765 443 4543 222 223338999999999999999999999999999
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|||+|||||+||+++++++++.+.|+|+|+++.|++.+++|++++|+.++.++++|+..+.. ...||+|++|||||
T Consensus 253 ~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---EEQPDAILLDAPCT 329 (445)
T ss_pred EEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---CCCCCEEEEcCCCC
Confidence 999999999999999999987778999999999999999999999999999999999987642 36799999999999
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecC
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCG 339 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~ 339 (384)
|+|+++|+|+++|.++++++..++..|.++|.+++++| ||||+|||+|||++++|||+||+++|+++ ++++++..
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~ 405 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL----KPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSP 405 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccc
Confidence 99999999999999999999999999999999999997 99999999999999999999999999876 67776542
Q ss_pred CCCCCCCcccccccccCCCcCCeeEEcCCCC-CCCceeEEEEEecC
Q 016730 340 LDFGRQGFVRFREHRFHPSLEKTRRFYPHVH-NMDGFFVAKVYLDL 384 (384)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~-~~dGFF~A~l~~~~ 384 (384)
... ++ .|.. .+...+++|++|+.+ ++||||+|+|+|.+
T Consensus 406 ~~l--~~--~~~~---~~~~~~~~~~~P~~~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 406 GSL--PE--PFHE---VAHPKGAILTLPGEHEGFDGGFAQRLRKNA 444 (445)
T ss_pred ccc--cc--cccc---ccCCCCcEEECCCCCCCCCcEEEEEEEecC
Confidence 211 11 1110 011235689999987 88999999999974
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=6.3e-58 Score=436.70 Aligned_cols=263 Identities=50% Similarity=0.714 Sum_probs=226.1
Q ss_pred EEEcCCCCCHHHHHHHHHHcCCcccCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEe
Q 016730 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185 (384)
Q Consensus 106 ~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~ 185 (384)
+|||++|++++++.+.|.+.|+.+++. . .+..+.+......+..+++|.+|+|++||.+|++++.+|++++|++|||+
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPW-C-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeec-C-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 699999999999999999999987654 2 33344443344468999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC
Q 016730 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (384)
Q Consensus 186 cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~ 265 (384)
|||||+||+++++++++.|.|+|+|+++.|++.+++|++++|+.++.+++.|+..++... +.||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEcCCCCCCccc
Confidence 999999999999999888899999999999999999999999999999999988765432 569999999999999999
Q ss_pred CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC-CCEEeecCCCCCC
Q 016730 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (384)
Q Consensus 266 ~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~-~~~l~~~~~~~~~ 344 (384)
+++|+++|.++++++..++..|+++|.+|+++| ||||+|||||||++++|||+||+++++++ ++.+++. .+.
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~---~~~ 229 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFDAL----KPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP---KGD 229 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc---CCc
Confidence 999999999999999999999999999999996 99999999999999999999999999876 5665522 111
Q ss_pred CCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEe
Q 016730 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYL 382 (384)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~ 382 (384)
+....+.. .....+|+|++||.|++||||+|+|+|
T Consensus 230 ~~~~~~~~---~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 230 EFFGANKG---KEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccc---ccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 11111100 002356899999999999999999986
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-41 Score=324.47 Aligned_cols=254 Identities=31% Similarity=0.477 Sum_probs=203.6
Q ss_pred HHHHhCC-HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHH-----------cC--CcccCCCccccccEEEec--
Q 016730 81 ALVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN-----------RG--VNLDPLSKWSKVGLVVYD-- 144 (384)
Q Consensus 81 ~l~~~~~-~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-----------~g--~~~~~~~~~~~~~~~~~~-- 144 (384)
+..+.|. .+++.++.+.+..+.|.+.|+.......+++...+++ +| ++.....+|+|.++.+..
T Consensus 31 ~~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~ 110 (375)
T KOG2198|consen 31 KALDHFDKEDEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDV 110 (375)
T ss_pred HHHhcCcchHHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcC
Confidence 3455665 7899999999999999999987665544443333222 34 322222378877654321
Q ss_pred ------CCCCCCCCccc-----ccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccC---CceEEEEe
Q 016730 145 ------SQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANE 210 (384)
Q Consensus 145 ------~~~~~~~~~~~-----~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D 210 (384)
...++...++| ..|.|+.||++||+++.+|+++||++||||||||||||..|.+.+.. .|.|+|+|
T Consensus 111 ~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND 190 (375)
T KOG2198|consen 111 KLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVAND 190 (375)
T ss_pred cccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecc
Confidence 11123344444 57899999999999999999999999999999999999999887753 36999999
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------CCCCCCEEEEcCCCCCCCcCCCCchhhcc-CCHHHHHH
Q 016730 211 MKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQK 282 (384)
Q Consensus 211 ~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------~~~~fD~VllDaPCSg~G~~~r~p~~~~~-~~~~~i~~ 282 (384)
.+..|+..+...++++...+..+.+.|+..++... ....||+||||+||||.|+++++|++.-. |....-..
T Consensus 191 ~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~ 270 (375)
T KOG2198|consen 191 VDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALG 270 (375)
T ss_pred cCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccC
Confidence 99999999999999998888888888887765442 23579999999999999999999999765 77777678
Q ss_pred HHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC--CCEEeec
Q 016730 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR--DVKLVPC 338 (384)
Q Consensus 283 l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~--~~~l~~~ 338 (384)
|..+|.+||.+++++| |+||+|||||||++|.|||+||+.+|+.. .++++..
T Consensus 271 L~~LQ~~iL~rgl~lL----k~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~ 324 (375)
T KOG2198|consen 271 LHALQLRILRRGLRLL----KVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDV 324 (375)
T ss_pred ChHHHHHHHHHHHHHh----cCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceee
Confidence 9999999999999997 99999999999999999999999999875 4667665
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.5e-38 Score=300.65 Aligned_cols=287 Identities=30% Similarity=0.397 Sum_probs=227.2
Q ss_pred hCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc----cCC----CccccccEEEecCCCCCCCCcccc
Q 016730 85 MFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL----DPL----SKWSKVGLVVYDSQVPIGATPEYM 156 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 156 (384)
.-+.+...++....+.+.|.|+|+||++.+.++....|..+++.. .|. .+..+ .+.++..+..+...+.|+
T Consensus 113 k~~~~~~~~l~~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~-~ll~~~~~n~i~~~~ly~ 191 (413)
T KOG2360|consen 113 KRKVKSLRELKLTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVE-NLIIFPPSNFIVEHELYK 191 (413)
T ss_pred hhhHHHHHHhhccCCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccch-hhcccCCCcceeeccccc
Confidence 334455666665455799999999999999999999887776651 111 01111 122223344577789999
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
.|++++||.+|+++++.|+|.+|.+|+|+||+||.||+|++..+.+.|+++|+|.++.|.+.++..+...|+.++....+
T Consensus 192 ~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~ 271 (413)
T KOG2360|consen 192 NGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEG 271 (413)
T ss_pred cCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhh--ccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~--~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+...+.....+.+..||+||+|||+|+..|.-.+. -....+.+..|...|-.++.+|+.+ ..--+++|||||
T Consensus 272 df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-----p~~k~vvystcs 346 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-----PNLKRLVYSTCS 346 (413)
T ss_pred cccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-----Cchhheeeecch
Confidence 988754333447789999999999999987755444 3446788999999999999999985 455799999999
Q ss_pred CCccccHHHHHHHHhcC-C-CEEee--cCCCCCCCCcccccccccCCCcCCeeEEcCCCCCCCceeEEEEEec
Q 016730 315 IMVTENEAVIDYALKKR-D-VKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKVYLD 383 (384)
Q Consensus 315 i~~~ENe~vv~~~l~~~-~-~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~~~ 383 (384)
++.+|||+||+..|... + +++.+ +...|...|...| +..+.|+|-.|....++|||+|.+.|+
T Consensus 347 ~~reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~------~~~e~~lr~~p~~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 347 LHREENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTF------SGAEHCLRASPKSTLTIGFFVALFERV 413 (413)
T ss_pred hhhhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccc------cccccceecccCCCCcceEEEEEeecC
Confidence 99999999999877654 3 34444 3223333443333 224678999999999999999998874
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.76 E-value=9.7e-18 Score=168.36 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=123.5
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.-..++++|+|..|......+..+ .+|.+|||+|||+|+.+++++ ..+...|+++|+|+.+++.+++|++.+|+.
T Consensus 195 dl~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa--~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~ 269 (396)
T PRK15128 195 DIQGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSAL--MGGCSQVVSVDTSQEALDIARQNVELNKLD 269 (396)
T ss_pred ecccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHH--hCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345688999999998776665544 358899999999999887654 344569999999999999999999999985
Q ss_pred --eEEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 230 --NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 230 --~v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
++.++++|+.++...+ .+++||.|++|||+... +...+........+++..|.++| +||
T Consensus 270 ~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~a~~lL----k~g 332 (396)
T PRK15128 270 LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINMLAIQLL----NPG 332 (396)
T ss_pred CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 6899999998753222 23589999999996332 22344444455677888899886 999
Q ss_pred cEEEEEeccCCc--cccHHHHHHHHhcC--CCEEee
Q 016730 306 GYIVYSTCSIMV--TENEAVIDYALKKR--DVKLVP 337 (384)
Q Consensus 306 G~lvYsTCSi~~--~ENe~vv~~~l~~~--~~~l~~ 337 (384)
|.|+++|||-+. ++=.++|....... .++++.
T Consensus 333 G~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 333 GILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred eEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999554 44455666555544 345544
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.70 E-value=4e-17 Score=162.38 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=135.3
Q ss_pred cEEEecCCCC--CCCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHH
Q 016730 139 GLVVYDSQVP--IGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216 (384)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl 216 (384)
.+.+.+..+. +.-..+.++|+|..|..+...+...+. |.+|||+||.+||.|.|.|. ++..+|+++|+|...+
T Consensus 179 ~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al 253 (393)
T COG1092 179 EVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRAL 253 (393)
T ss_pred cEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHH
Confidence 3444444332 233457789999999988777666553 99999999999999987665 3555999999999999
Q ss_pred HHHHHHHHHcCCce--EEEEecCCCCccccc--CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHH
Q 016730 217 KSLTANLHRMGVTN--TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292 (384)
Q Consensus 217 ~~l~~n~~r~g~~~--v~~~~~D~~~~~~~~--~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~ 292 (384)
+.+++|++.+|++. +.++++|+..+-... .+.+||+|++||| .+.+++.......+-..+|+.
T Consensus 254 ~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP-------------sF~r~k~~~~~~~rdy~~l~~ 320 (393)
T COG1092 254 EWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPP-------------SFARSKKQEFSAQRDYKDLND 320 (393)
T ss_pred HHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCc-------------ccccCcccchhHHHHHHHHHH
Confidence 99999999999853 789999998764332 3458999999999 566666666778888899999
Q ss_pred HHHHchhccCCCCcEEEEEeccCCccccH--HHHHHHHhcC--CCEEe
Q 016730 293 AAIDMVDANSKSGGYIVYSTCSIMVTENE--AVIDYALKKR--DVKLV 336 (384)
Q Consensus 293 ~a~~~L~~~lkpGG~lvYsTCSi~~~ENe--~vv~~~l~~~--~~~l~ 336 (384)
.+.++| +|||+++.||||-+-...+ +.|...+... .++++
T Consensus 321 ~~~~iL----~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 321 LALRLL----APGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHHHc----CCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 999996 9999999999999887764 4444333333 44444
No 16
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.63 E-value=1.1e-14 Score=129.88 Aligned_cols=138 Identities=27% Similarity=0.330 Sum_probs=115.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~ 246 (384)
..+....|.|+||++++|+|||+|+.|..++ ++.+.++|+|+|.++++++.+++|++++|++|+.++.+|+-+.....
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~- 100 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL- 100 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-
Confidence 4456677899999999999999999999999 66778999999999999999999999999999999999997764432
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
..||+|++- |.|- ...+|+.+|..| ||||+||...-++ ||+...-.
T Consensus 101 -~~~daiFIG----Gg~~----------------------i~~ile~~~~~l----~~ggrlV~naitl---E~~~~a~~ 146 (187)
T COG2242 101 -PSPDAIFIG----GGGN----------------------IEEILEAAWERL----KPGGRLVANAITL---ETLAKALE 146 (187)
T ss_pred -CCCCEEEEC----CCCC----------------------HHHHHHHHHHHc----CcCCeEEEEeecH---HHHHHHHH
Confidence 379999983 2221 245899999996 9999999877666 99988888
Q ss_pred HHhcCCC-EEeecCC
Q 016730 327 ALKKRDV-KLVPCGL 340 (384)
Q Consensus 327 ~l~~~~~-~l~~~~~ 340 (384)
.+++.++ +++.+..
T Consensus 147 ~~~~~g~~ei~~v~i 161 (187)
T COG2242 147 ALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHcCCceEEEEEe
Confidence 8888887 7766543
No 17
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=8.6e-14 Score=131.97 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=105.0
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
+.+|||+|||+|..++.++...++ ..|+++|+|+..++.+++|++.+|. .++++|..........++||.|++|||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhcCCCEeEEEECCC
Confidence 468999999999999999987654 5899999999999999999998874 567788765321111257999999999
Q ss_pred CCCCCcCCC-CchhhccCCHHHH---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 259 CSGTGVISK-DESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 259 CSg~G~~~r-~p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
|..++.+.+ .|+++.......+ .+....+++++..+.++| ||||.+++.+.. ..-++ |..++++.++
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L----~~gG~l~l~~~~---~~~~~-v~~~l~~~g~ 233 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL----APGGHLLVETSE---RQAPL-AVEAFARAGL 233 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc---chHHH-HHHHHHHCCC
Confidence 998887654 5565544333322 244567889999999986 999999998753 22334 4445555544
No 18
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=2.3e-13 Score=129.95 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=141.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCC-CHHHH---HHHHHH--cCCcccCCC---ccccccEEEecCC
Q 016730 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT-RRRDL---ADVLIN--RGVNLDPLS---KWSKVGLVVYDSQ 146 (384)
Q Consensus 76 ~wl~~~l~~~~~~~~~~~~~~~~~~~~p~~~RvN~~k~-~~~~~---~~~L~~--~g~~~~~~~---~~~~~~~~~~~~~ 146 (384)
.|..++|.+ +..+++-++.......+.+++.|..+. +.+++ .+.+.. .|..+.-+. ++. +..+..+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~--~~~~~~~- 83 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFW--GLDFKVS- 83 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEc--CcEEEEC-
Confidence 455666655 777888888888888888999887665 44333 222222 333221110 111 1111100
Q ss_pred CCCCCCcccccceEEEeCCcC-cchhh---hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH
Q 016730 147 VPIGATPEYMAGFYMLQSASS-FLPVM---ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 147 ~~~~~~~~~~~G~~~~Qd~ss-~l~~~---~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n 222 (384)
.|.+.. .+.+ .++-. .+...++.+|||+|||+|..+..++...+ ...|+++|+++..++.+++|
T Consensus 84 ----------~~~lip-r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 84 ----------PGVLIP-RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRN 151 (275)
T ss_pred ----------CCceeC-CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence 111111 1111 11111 22345778999999999999999998875 37899999999999999999
Q ss_pred HHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCC-CCchhhccCCHHHH---HHHHHHHHHHHHHHHHch
Q 016730 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS-KDESVKTSKSLEDI---QKCSYLQKQLILAAIDMV 298 (384)
Q Consensus 223 ~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~-r~p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L 298 (384)
+......++.+++.|...... .++||.|++||||...+.+. ..++++.......+ ......+++++..+.++|
T Consensus 152 ~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 152 AKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred HHhCCCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 984444578898998855321 36899999999998877654 23333321111111 123456778999999986
Q ss_pred hccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 299 DANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 299 ~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+|||++++.+. . .. .+.+..++++.++.
T Consensus 229 ----k~gG~l~~e~g-~--~~-~~~~~~~l~~~gf~ 256 (275)
T PRK09328 229 ----KPGGWLLLEIG-Y--DQ-GEAVRALLAAAGFA 256 (275)
T ss_pred ----ccCCEEEEEEC-c--hH-HHHHHHHHHhCCCc
Confidence 99999988542 2 22 23455566655554
No 19
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=1.7e-14 Score=119.83 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=90.8
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
|.+|||+|||+|..+.++++.. ...++++|+++..++.++.|+.+.++ .++.++++|..........++||.|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999888875 47999999999999999999999998 46899999998876445568999999999
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+......... ..+....+++++.++| ||||.+++.+|.
T Consensus 79 P~~~~~~~~~~--------------~~~~~~~~~~~~~~~L----~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAA--------------LRRLYSRFLEAAARLL----KPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHE----EEEEEEEEEEEG
T ss_pred CCccccccchh--------------hHHHHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 98644211110 0114557889999986 999999999874
No 20
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.55 E-value=6.6e-14 Score=150.48 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=122.8
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.-..+.++|.|..|.....++..+. +|.+|||+|||+|+.+++++.. +...|+++|+|+..++.+++|++.+|+.
T Consensus 513 ~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~ 587 (702)
T PRK11783 513 NLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLS 587 (702)
T ss_pred EcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 3345778999999988766655543 4789999999999999988874 3357999999999999999999999986
Q ss_pred --eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 230 --NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 230 --~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
++.++++|+.++.... .++||.|++|||+.+.+- ...++....+.+.+++..+.++| +|||.
T Consensus 588 ~~~v~~i~~D~~~~l~~~-~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL----~~gG~ 651 (702)
T PRK11783 588 GRQHRLIQADCLAWLKEA-REQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLL----RPGGT 651 (702)
T ss_pred ccceEEEEccHHHHHHHc-CCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHc----CCCCE
Confidence 6899999987653222 368999999999765431 11122234455778888889886 99999
Q ss_pred EEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 308 lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
+++++|+-+.... ...+.+.++.+..+
T Consensus 652 l~~~~~~~~~~~~----~~~~~~~g~~~~~i 678 (702)
T PRK11783 652 LYFSNNKRGFKMD----EEGLAKLGLKAEEI 678 (702)
T ss_pred EEEEeCCccCChh----HHHHHhCCCeEEEE
Confidence 9999998766654 33444455555443
No 21
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=2.8e-13 Score=123.81 Aligned_cols=133 Identities=21% Similarity=0.324 Sum_probs=103.1
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG 246 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~ 246 (384)
.++...+++.+|++|||+|||+|..+..++..++..++|+++|+++.+++.+++|++++|+ .++.++++|+.+.....
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~- 108 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI- 108 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-
Confidence 3444556788999999999999999999988876668999999999999999999999994 67888888887643222
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.+.||+|+++.. .. ....++..+.+.| ||||++++.+|++ |+...+..
T Consensus 109 ~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~~ 156 (198)
T PRK00377 109 NEKFDRIFIGGG---SE----------------------KLKEIISASWEII----KKGGRIVIDAILL---ETVNNALS 156 (198)
T ss_pred CCCCCEEEECCC---cc----------------------cHHHHHHHHHHHc----CCCcEEEEEeecH---HHHHHHHH
Confidence 257999998531 00 1135678888875 9999999988866 55566666
Q ss_pred HHhcCCC
Q 016730 327 ALKKRDV 333 (384)
Q Consensus 327 ~l~~~~~ 333 (384)
.+++.++
T Consensus 157 ~l~~~g~ 163 (198)
T PRK00377 157 ALENIGF 163 (198)
T ss_pred HHHHcCC
Confidence 7776664
No 22
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1.4e-13 Score=123.71 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=111.3
Q ss_pred cCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc
Q 016730 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 166 ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~ 245 (384)
.+.+....+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++..++ ++.+..+|.....
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--- 79 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc---
Confidence 34555566666678899999999999999888753 2799999999999999999998887 5788888876543
Q ss_pred CCCCCCEEEEcCCCCCC-CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 246 GLNTVDRVLLDAPCSGT-GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~-G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
.++||.|+++||+-.. +...+++...+.+.. .......+.++|..+.++| ||||++++++++. .+...+
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~L----k~gG~~~~~~~~~---~~~~~~ 149 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDG--GKDGRKVIDRFLDELPEIL----KEGGRVQLIQSSL---NGEPDT 149 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhc--CCchHHHHHHHHHhHHHhh----CCCCEEEEEEecc---CChHHH
Confidence 2589999999998433 222222222111110 0011234677888888886 9999999998776 345666
Q ss_pred HHHHhcCCCEEeec
Q 016730 325 DYALKKRDVKLVPC 338 (384)
Q Consensus 325 ~~~l~~~~~~l~~~ 338 (384)
..++++.+++...+
T Consensus 150 ~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 150 FDKLDERGFRYEIV 163 (179)
T ss_pred HHHHHhCCCeEEEE
Confidence 67777777766543
No 23
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.54 E-value=4.6e-15 Score=142.34 Aligned_cols=146 Identities=20% Similarity=0.222 Sum_probs=104.8
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.-..+.++|.|..|.....++.... .|.+|||++|.+||.|++.+. ++..+|+++|.|...++.+++|++.+|++
T Consensus 98 ~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 98 DLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp ESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3345788999999999888766653 588999999999999987554 34458999999999999999999999975
Q ss_pred --eEEEEecCCCCcccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 230 --NTIVCNYDGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 230 --~v~~~~~D~~~~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
.+.++..|+.++-.. ...++||.|++|||.-+ ++..++ .+-..+++..++++| +|||
T Consensus 173 ~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-------------k~~~~~---~~~y~~L~~~a~~ll----~~gG 232 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-------------KSKFDL---ERDYKKLLRRAMKLL----KPGG 232 (286)
T ss_dssp CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-------------SSTCEH---HHHHHHHHHHHHHTE----EEEE
T ss_pred ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-------------CCHHHH---HHHHHHHHHHHHHhc----CCCC
Confidence 688999998764221 12468999999999432 122222 345678999999987 9999
Q ss_pred EEEEEeccCCcccc
Q 016730 307 YIVYSTCSIMVTEN 320 (384)
Q Consensus 307 ~lvYsTCSi~~~EN 320 (384)
.|+.||||-+-..+
T Consensus 233 ~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 233 LLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEE--TTS-HH
T ss_pred EEEEEcCCcccCHH
Confidence 99999999887765
No 24
>PRK14967 putative methyltransferase; Provisional
Probab=99.53 E-value=1.8e-13 Score=127.30 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=109.6
Q ss_pred ceEEEeCCcCcchhhhc---CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q 016730 158 GFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L---~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~ 234 (384)
|.|..|..+ .+.+..+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|+++.|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 445555443 3333333 4678899999999999999888775 235899999999999999999999887 57788
Q ss_pred ecCCCCcccccCCCCCCEEEEcCCC---CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 235 NYDGNELPKVLGLNTVDRVLLDAPC---SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VllDaPC---Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
++|..... ..+.||.|++|||. +..+...+.|+..|....+. ...+..++..+.++| ||||++++.
T Consensus 90 ~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~L----k~gG~l~~~ 158 (223)
T PRK14967 90 RGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALL----APGGSLLLV 158 (223)
T ss_pred ECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhc----CCCcEEEEE
Confidence 88876532 23689999999874 44454455555555433222 234567888899986 999999986
Q ss_pred eccCCccccHHHHHHHHhcCCCE
Q 016730 312 TCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+.+.. +-..+...++..++.
T Consensus 159 ~~~~~---~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 159 QSELS---GVERTLTRLSEAGLD 178 (223)
T ss_pred Eeccc---CHHHHHHHHHHCCCC
Confidence 55543 222233444555543
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=6e-13 Score=128.42 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
++++.+|||+|||+|..+..++...++ ..|+|+|+|+..++.+++|++++|+. ++.++++|+.... ...+||.|+
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---PGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---CCCCccEEE
Confidence 345679999999999999999987754 68999999999999999999999985 6889999986432 235799999
Q ss_pred EcCCCCCCCcCCCCc-hhhccCCHHHH----HHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 255 LDAPCSGTGVISKDE-SVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 255 lDaPCSg~G~~~r~p-~~~~~~~~~~i----~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|||+...+.+..-+ +++ ..+... ......++.++..+.+.| +|||+++.-+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L----~~gG~l~~e~g 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHL----NENGVLVVEVG 252 (284)
T ss_pred ECCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEEC
Confidence 999998776543322 221 111111 122356778999999986 99999986554
No 26
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=2e-13 Score=134.42 Aligned_cols=133 Identities=19% Similarity=0.227 Sum_probs=102.4
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+.++++|++|||.|||+|+.+..++. + ...|+|+|+++.++..++.|++.+|+.++.+..+|+.+++.. .+.||.
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--SESVDA 251 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--cCCCCE
Confidence 34678899999999999998776544 3 368999999999999999999999998888889999987642 368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
|++||||........ .....++.++|..+.+.| ||||+++|.+++-..- ...++..+
T Consensus 252 Iv~dPPyg~~~~~~~-------------~~~~~l~~~~l~~~~r~L----k~gG~lv~~~~~~~~~------~~~~~~~g 308 (329)
T TIGR01177 252 IATDPPYGRSTTAAG-------------DGLESLYERSLEEFHEVL----KSEGWIVYAVPTRIDL------ESLAEDAF 308 (329)
T ss_pred EEECCCCcCcccccC-------------CchHHHHHHHHHHHHHHc----cCCcEEEEEEcCCCCH------HHHHhhcC
Confidence 999999854322111 123356788999999986 9999999998865322 23455556
Q ss_pred C
Q 016730 333 V 333 (384)
Q Consensus 333 ~ 333 (384)
+
T Consensus 309 ~ 309 (329)
T TIGR01177 309 R 309 (329)
T ss_pred c
Confidence 6
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.48 E-value=3.5e-13 Score=110.89 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=84.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
||.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++++.+.+. .++.+++.|+ ..... ..+.||.|+++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-FLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-TSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-cCCCCCEEEEC
Confidence 688999999999999999999654 47899999999999999999976665 6799999999 22111 12679999986
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
. .+...+ . .. ..++++|+++.+.| +|||++++++|
T Consensus 78 ~-~~~~~~-----------~-----~~-~~~~~~l~~~~~~L----~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 G-FTLHFL-----------L-----PL-DERRRVLERIRRLL----KPGGRLVINTC 112 (112)
T ss_dssp S-GSGGGC-----------C-----HH-HHHHHHHHHHHHHE----EEEEEEEEEE-
T ss_pred C-Cccccc-----------c-----ch-hHHHHHHHHHHHhc----CCCcEEEEEEC
Confidence 4 100001 0 11 34567788888886 99999999998
No 28
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.48 E-value=3.6e-13 Score=126.12 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=119.9
Q ss_pred cceEEEeCCc-------CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 157 AGFYMLQSAS-------SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 157 ~G~~~~Qd~s-------s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
....++|+.. ++|.+.+..+....+|||+|||.|..++.+|++..+ .+|+++|+++...+.+++|++.+++.
T Consensus 16 ~~~~I~q~~~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~ 94 (248)
T COG4123 16 KQFFIIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLE 94 (248)
T ss_pred cceEEEeCCCccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcch
Confidence 3445566653 456666666777899999999999999999998765 79999999999999999999998885
Q ss_pred -eEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcC-CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 230 -NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 230 -~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~-~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
++.+++.|...+.+.....+||.|+|+||.-..|.. ..+|.-...+.. ....-.++++.|.++| ||||+
T Consensus 95 ~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e-----~~~~le~~i~~a~~~l----k~~G~ 165 (248)
T COG4123 95 ERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE-----ITLDLEDLIRAAAKLL----KPGGR 165 (248)
T ss_pred hceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhh-----hcCCHHHHHHHHHHHc----cCCCE
Confidence 599999999988766655679999999999777765 222211111110 1112345677777775 99999
Q ss_pred EEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 308 IVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 308 lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
+.+ +++.|.-.-+-..+++.+++
T Consensus 166 l~~----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 166 LAF----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred EEE----EecHHHHHHHHHHHHhcCCC
Confidence 976 47777765555666665443
No 29
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.48 E-value=3.5e-13 Score=124.76 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=77.3
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
....++++++|++|||+|||+|..|..++.+.+..+.|+++|+++..++.+++|++++|++++.++++|+...... ..
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 145 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LA 145 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cC
Confidence 3455678899999999999999999999998876688999999999999999999999999999999998764322 26
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.||+|++++++
T Consensus 146 ~fD~Ii~~~~~ 156 (215)
T TIGR00080 146 PYDRIYVTAAG 156 (215)
T ss_pred CCCEEEEcCCc
Confidence 89999999874
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=8e-14 Score=124.48 Aligned_cols=126 Identities=21% Similarity=0.229 Sum_probs=97.0
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|+++.+.+..+...++.+|||+|||+|..+.+++...+. ..|+++|+++..++.+++|++.+++.++.+...|......
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 456666677776667889999999999999999987653 5799999999999999999999999888898999876433
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
..+||.|+++||...-+ .......++++..|.++| ||||.++...-+
T Consensus 96 ---~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~L----k~~G~l~lv~~~ 142 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYL----KPGGRLFLVINS 142 (170)
T ss_dssp ---TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHE----EEEEEEEEEEET
T ss_pred ---ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhc----cCCCEEEEEeec
Confidence 37899999999932111 112345678899999986 999999665433
No 31
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=2e-12 Score=120.69 Aligned_cols=106 Identities=20% Similarity=0.307 Sum_probs=82.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc--cccCCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVD 251 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~--~~~~~~~fD 251 (384)
+++++|++|||+|||+|+.+.+++..++ .|.|+|+|+++.+++.+.+++++. .|+.++.+|+.... .... +.||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhcc-ccCC
Confidence 6778999999999999999999999986 689999999999999888887654 67888889987531 1112 5699
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+|++|.+ +|+ ....+|..+.++| ||||+++.+
T Consensus 144 ~i~~d~~---------~p~---------------~~~~~L~~~~r~L----KpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVA---------QPN---------------QAEIAIDNAEFFL----KDGGYLLLA 175 (226)
T ss_pred EEEECCC---------Chh---------------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 9998865 111 0123567888875 999999984
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=1.2e-12 Score=118.50 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=101.0
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
....++...+.+.++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+++|++++++.++.+.++|+...
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--- 93 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--- 93 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---
Confidence 3334455567777899999999999999999988764 479999999999999999999999988888888887421
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
. ...||+|+++..- + .+ ..++..+.+.| +|||++++.... .+|...+
T Consensus 94 ~-~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~L----k~gG~lv~~~~~---~~~~~~~ 140 (187)
T PRK08287 94 L-PGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHL----HPGGRLVLTFIL---LENLHSA 140 (187)
T ss_pred c-CcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhc----CCCeEEEEEEec---HhhHHHH
Confidence 2 2579999986320 0 01 23667777875 999999986543 4666777
Q ss_pred HHHHhcCCCEE
Q 016730 325 DYALKKRDVKL 335 (384)
Q Consensus 325 ~~~l~~~~~~l 335 (384)
..++++.+++.
T Consensus 141 ~~~l~~~g~~~ 151 (187)
T PRK08287 141 LAHLEKCGVSE 151 (187)
T ss_pred HHHHHHCCCCc
Confidence 77777776543
No 33
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=6.1e-13 Score=124.36 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=96.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..+.+.+|++|||+|||+|-.|.++++..+ .|+|+++|+|+.+|+.+++.+...|..++.++.+|+..+| +++.+
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~s 119 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDNS 119 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCCc
Confidence 44555566899999999999999999999998 6999999999999999999999999988999999999998 56799
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
||+|.+ +.|+ | .... ..+.|+++.+.| ||||+++.. .+++-++.
T Consensus 120 FD~vt~-----~fgl-r---------------nv~d-~~~aL~E~~RVl----KpgG~~~vl--e~~~p~~~ 163 (238)
T COG2226 120 FDAVTI-----SFGL-R---------------NVTD-IDKALKEMYRVL----KPGGRLLVL--EFSKPDNP 163 (238)
T ss_pred cCEEEe-----eehh-h---------------cCCC-HHHHHHHHHHhh----cCCeEEEEE--EcCCCCch
Confidence 999987 2221 1 1111 134688888886 999977653 44544553
No 34
>PTZ00146 fibrillarin; Provisional
Probab=99.42 E-value=5.3e-12 Score=121.07 Aligned_cols=114 Identities=23% Similarity=0.296 Sum_probs=83.3
Q ss_pred Ccchhhh------cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~------L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|-|++.+ +.+++|++|||+|||||++|.|++..+...+.|+|+|+++.+++.+.+.++.. .|+.++..|++.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~ 192 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY 192 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC
Confidence 4566555 35789999999999999999999999987899999999987776666554432 577888899875
Q ss_pred ccc-ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHH-HHHHHHHchhccCCCCcEEEEE
Q 016730 241 LPK-VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ-LILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 241 ~~~-~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~-iL~~a~~~L~~~lkpGG~lvYs 311 (384)
... ....+.||+|++|.. .|+ |.+ ++.+|.++| ||||+++.+
T Consensus 193 p~~y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~L----KpGG~~vI~ 236 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFL----KNGGHFIIS 236 (293)
T ss_pred hhhhhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhc----cCCCEEEEE
Confidence 311 111257999999984 121 232 344666665 999999874
No 35
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.4e-12 Score=118.83 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=107.0
Q ss_pred cccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEE
Q 016730 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIV 233 (384)
Q Consensus 155 ~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~ 233 (384)
|+.+--++--+.|.+.+..+++.||++|||+|+|+|..|+.||...++.|+|+.+|+.+++++.+++|++..|+.+ +.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 5666666666777888999999999999999999999999999999888999999999999999999999999987 888
Q ss_pred EecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEe
Q 016730 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YST 312 (384)
Q Consensus 234 ~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsT 312 (384)
...|..+.... ..||+|++|.| +| -+.|.++.+.| ||||.++ |+.
T Consensus 151 ~~~Dv~~~~~~---~~vDav~LDmp---------~P------------------W~~le~~~~~L----kpgg~~~~y~P 196 (256)
T COG2519 151 KLGDVREGIDE---EDVDAVFLDLP---------DP------------------WNVLEHVSDAL----KPGGVVVVYSP 196 (256)
T ss_pred Eeccccccccc---cccCEEEEcCC---------Ch------------------HHHHHHHHHHh----CCCcEEEEEcC
Confidence 88998876432 58999999998 22 24688888886 9999876 665
Q ss_pred cc
Q 016730 313 CS 314 (384)
Q Consensus 313 CS 314 (384)
|.
T Consensus 197 ~v 198 (256)
T COG2519 197 TV 198 (256)
T ss_pred CH
Confidence 53
No 36
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.40 E-value=4.7e-13 Score=125.50 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=86.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.++..+.+++|++|||+|||+|-.|..++...+..+.|+++|+|+.+++.+++++...+..++.++.+|+.++|. +++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~--~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF--PDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC--CCC
Confidence 455667788999999999999999999998887778999999999999999999999999899999999999873 458
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
+||.|.+ +.|+ +.-|+ +.+.|+++.++| ||||+++....| .-+|. .+..+.
T Consensus 116 sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVL----kPGG~l~ile~~--~p~~~-~~~~~~ 166 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFPD----------------RERALREMYRVL----KPGGRLVILEFS--KPRNP-LLRALY 166 (233)
T ss_dssp -EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHE----EEEEEEEEEEEE--B-SSH-HHHHHH
T ss_pred ceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHc----CCCeEEEEeecc--CCCCc-hhhcee
Confidence 9999986 3332 11111 234678888886 999999876543 34453 444433
Q ss_pred h
Q 016730 329 K 329 (384)
Q Consensus 329 ~ 329 (384)
+
T Consensus 167 ~ 167 (233)
T PF01209_consen 167 K 167 (233)
T ss_dssp H
T ss_pred e
Confidence 3
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=7.9e-12 Score=117.51 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+..++...++ ..|+++|+++.+++.++.++...|+.++.+.++|+.... ..++||.|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---cCCceeEEEECC
Confidence 3568999999999999999987754 689999999999999999999999988999999987632 237899999999
Q ss_pred CCCCCCcCCCC-chhhccCCHHHH---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 258 PCSGTGVISKD-ESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 258 PCSg~G~~~r~-p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
|+...+..... ++++.......+ .........++..+.+.| +|||.+++.. +. ...+.+..++++.++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L----~~gG~~~~~~-~~---~~~~~~~~~l~~~gf 234 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL----KPGGWLLLEI-GY---DQGEAVRALFEAAGF 234 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc----ccCCEEEEEE-Cc---cHHHHHHHHHHhCCC
Confidence 99887654321 111110000000 011233456888888886 9999998853 22 223345555666666
Q ss_pred EEee
Q 016730 334 KLVP 337 (384)
Q Consensus 334 ~l~~ 337 (384)
+.+.
T Consensus 235 ~~v~ 238 (251)
T TIGR03534 235 ADVE 238 (251)
T ss_pred CceE
Confidence 5443
No 38
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.40 E-value=3.9e-12 Score=111.11 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=95.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
+++.+|||+|||+|..+..++......++++++|+|+.+++.+++++++++++++.+.++|..+++..+. +.||.|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 5688999999999999999996555568999999999999999999999999999999999999653222 689999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
.++- +. .....++..+.++| ++||+++.+.+. ...|.++.+.
T Consensus 81 ~~l~------------~~----------~~~~~~l~~~~~~l----k~~G~~i~~~~~-~~~~~~~~~~ 122 (152)
T PF13847_consen 81 GVLH------------HF----------PDPEKVLKNIIRLL----KPGGILIISDPN-HNDELPEQLE 122 (152)
T ss_dssp STGG------------GT----------SHHHHHHHHHHHHE----EEEEEEEEEEEE-HSHHHHHHHH
T ss_pred Cchh------------hc----------cCHHHHHHHHHHHc----CCCcEEEEEECC-hHHHHHHHHH
Confidence 7641 11 12245778888886 999999988887 3344444444
No 39
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=2.9e-12 Score=118.47 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=75.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
....++++++|++|||+|||+|..|..++.+++..++|+++|+++..++.++++++++|+.++.++++|+..... ...
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--~~~ 144 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--ENA 144 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--cCC
Confidence 344566788999999999999999999999987668999999999999999999999999999999999876432 236
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.||+|+++.
T Consensus 145 ~fD~I~~~~ 153 (212)
T PRK13942 145 PYDRIYVTA 153 (212)
T ss_pred CcCEEEECC
Confidence 899999864
No 40
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.38 E-value=5.2e-12 Score=128.77 Aligned_cols=88 Identities=23% Similarity=0.167 Sum_probs=73.3
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-cc-cCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KV-LGLNT 249 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-~~-~~~~~ 249 (384)
.++.+.++++|||+|||+|..++.++... ..|+|+|+++.+++.+++|++.+|+.|+.++.+|+.... .. .....
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34456788999999999999999998763 479999999999999999999999999999999987532 11 12357
Q ss_pred CCEEEEcCCCCCC
Q 016730 250 VDRVLLDAPCSGT 262 (384)
Q Consensus 250 fD~VllDaPCSg~ 262 (384)
||+|++|||.+|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999997654
No 41
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.38 E-value=3.1e-12 Score=125.25 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=72.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+...++.+|||+|||+|..+..++.. ...|+|+|+++.+++.+++|++.+|+.++.+..+|+..+.... .+.||.|
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~V 244 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDLV 244 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeEE
Confidence 34346789999999999999999884 2689999999999999999999999988999999997654322 2479999
Q ss_pred EEcCCCCCCC
Q 016730 254 LLDAPCSGTG 263 (384)
Q Consensus 254 llDaPCSg~G 263 (384)
++|||++|.+
T Consensus 245 v~dPPr~G~~ 254 (315)
T PRK03522 245 LVNPPRRGIG 254 (315)
T ss_pred EECCCCCCcc
Confidence 9999987654
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.38 E-value=1.2e-11 Score=103.08 Aligned_cols=110 Identities=27% Similarity=0.385 Sum_probs=88.2
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+.+.++++|||+|||+|..+..+++..++ +.|+++|+++.+++.++++++.+++.++.++..|+....... ..+||
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D 90 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-LPEPD 90 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-cCCCC
Confidence 3456677889999999999999999998765 799999999999999999999999988888888876532222 25899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|+++.+ + . ...++++.+.+.| ||||+++.+.
T Consensus 91 ~v~~~~~----------~--------~-------~~~~~l~~~~~~L----k~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGS----------G--------G-------LLQEILEAIWRRL----RPGGRIVLNA 122 (124)
T ss_pred EEEECCc----------c--------h-------hHHHHHHHHHHHc----CCCCEEEEEe
Confidence 9998642 0 0 1236888999986 9999998754
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.37 E-value=2.9e-12 Score=116.78 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=107.7
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D 237 (384)
|.-..|+..+.+....+.+++|++|||+|||+|..|..++...+ .+.|+++|+|+.+++.+++|++++|+.++.++++|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 33456777777777788888999999999999999999887654 47999999999999999999999999889999998
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
+....... ...+|.|++|.. . . ..+++..+.+.| +|||++++.+++.
T Consensus 99 ~~~~~~~~-~~~~d~v~~~~~----~------------~----------~~~~l~~~~~~L----kpgG~li~~~~~~-- 145 (196)
T PRK07402 99 APECLAQL-APAPDRVCIEGG----R------------P----------IKEILQAVWQYL----KPGGRLVATASSL-- 145 (196)
T ss_pred hHHHHhhC-CCCCCEEEEECC----c------------C----------HHHHHHHHHHhc----CCCeEEEEEeecH--
Confidence 86421111 135788887642 0 0 135678888875 9999999998864
Q ss_pred cccHHHHHHHHh---cCCCEEeecC
Q 016730 318 TENEAVIDYALK---KRDVKLVPCG 339 (384)
Q Consensus 318 ~ENe~vv~~~l~---~~~~~l~~~~ 339 (384)
|.-..+...++ ..+++.+.+.
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 146 -EGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred -HHHHHHHHHHHhcCCCCceEEEEE
Confidence 33233333343 2366666553
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.37 E-value=1.9e-11 Score=118.04 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=94.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+.+|||+|||+|..+..++...++ ..|+|+|+|+.+++.+++|++++|+.+ +.++.+|..... ...+||.|++||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsNP 190 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---AGQKIDIIVSNP 190 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---cCCCccEEEECC
Confidence 368999999999999999988753 689999999999999999999999965 899999876532 224799999999
Q ss_pred CCCCCCcCCCCchhhccCCHHHH---HHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+-...-+...|++........+ .......++++..+.+.| +|||.+++-++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L----~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL----KPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc----cCCCEEEEEECc
Confidence 98666533222222211111110 112346788999999986 999999987653
No 45
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.37 E-value=1.9e-12 Score=121.99 Aligned_cols=117 Identities=29% Similarity=0.401 Sum_probs=88.9
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCC--c
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE--L 241 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~--~ 241 (384)
+.+.+....+++.||++||++|+|+|+.|..|+..+++.|+|+.+|++++|++.+++|++++|+. ++.+.+.|... +
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 33456788899999999999999999999999999988999999999999999999999999995 78999999853 2
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC-CCCcEEE-EEec
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS-KSGGYIV-YSTC 313 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l-kpGG~lv-YsTC 313 (384)
.... ...||.|++|.| +|. . .+.++.+. | |+||+++ ||.|
T Consensus 107 ~~~~-~~~~DavfLDlp---------~Pw---~---------------~i~~~~~~----L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 107 DEEL-ESDFDAVFLDLP---------DPW---E---------------AIPHAKRA----LKKPGGRICCFSPC 148 (247)
T ss_dssp STT--TTSEEEEEEESS---------SGG---G---------------GHHHHHHH----E-EEEEEEEEEESS
T ss_pred cccc-cCcccEEEEeCC---------CHH---H---------------HHHHHHHH----HhcCCceEEEECCC
Confidence 1111 267999999999 232 1 45666666 5 7999886 6655
No 46
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.37 E-value=2.6e-12 Score=127.61 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=62.6
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc------
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------ 244 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~------ 244 (384)
..++++.++ +|||++||.|..|+.+|... .+|+|+|+++..++.+++|++.+|++|+.++.+++.++...
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-G
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHH
Confidence 345566666 89999999999999988764 57999999999999999999999999999998776543211
Q ss_pred --------cCCCCCCEEEEcCCCCCCC
Q 016730 245 --------LGLNTVDRVLLDAPCSGTG 263 (384)
Q Consensus 245 --------~~~~~fD~VllDaPCSg~G 263 (384)
.....+|.|++|||-+|.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1123689999999988876
No 47
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=8.3e-12 Score=114.81 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=73.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+++++|++|||+|||+|..+..++++++..++|+++|+++..++.+++|++++|+. ++.+.++|+...... ..+
T Consensus 65 ~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~~ 142 (205)
T PRK13944 65 CELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HAP 142 (205)
T ss_pred HHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CCC
Confidence 45567889999999999999999999999876689999999999999999999999986 488999998764322 268
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
||+|+++.+
T Consensus 143 fD~Ii~~~~ 151 (205)
T PRK13944 143 FDAIIVTAA 151 (205)
T ss_pred ccEEEEccC
Confidence 999999865
No 48
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=8.4e-12 Score=121.72 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=99.8
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+|||+|||+|..+..++...++ ..|+|+|+|+..++.+++|++++|+. ++.++++|+.... ...+||.|++|||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---PGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---CCCCccEEEECCC
Confidence 68999999999999999987653 78999999999999999999999985 5899999976432 2257999999999
Q ss_pred CCCCCcCCC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 259 CSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 259 CSg~G~~~r-------~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
+.+.+.+.. .|...+.-... .....++++..+.+.| +|||++++-+ .. +.+.+..++.+.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~d----Gl~~~~~i~~~a~~~L----~pgG~l~~E~---g~--~~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDD----GLDLVRRILAEAPDYL----TEDGVLVVEV---GN--SRVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCc----hHHHHHHHHHHHHHhc----CCCCEEEEEE---Cc--CHHHHHHHHhhC
Confidence 988765432 22222211111 2256677999999986 9999998643 22 223355555554
Q ss_pred CC
Q 016730 332 DV 333 (384)
Q Consensus 332 ~~ 333 (384)
++
T Consensus 278 ~~ 279 (307)
T PRK11805 278 PF 279 (307)
T ss_pred CC
Confidence 43
No 49
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-11 Score=110.07 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=100.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.-.|..|+|+|||+|..++..+.+ +..+|+|+|+|++.++.+++|+.+ +..++.+++.|..++. ..||.|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dtv 112 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDTV 112 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----CccceE
Confidence 34557889999999999977654443 447999999999999999999999 4457999999998865 679999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
+.||| .|+.+||+|. .+|..|++. +.+|| |+|..-+.+-+..+.+..|.
T Consensus 113 imNPP---FG~~~rhaDr-----------------~Fl~~Ale~--------s~vVY---siH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 113 IMNPP---FGSQRRHADR-----------------PFLLKALEI--------SDVVY---SIHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred EECCC---CccccccCCH-----------------HHHHHHHHh--------hheEE---EeeccccHHHHHHHHHhcCC
Confidence 99999 6877888774 367888886 47888 57888899999888777764
Q ss_pred E
Q 016730 334 K 334 (384)
Q Consensus 334 ~ 334 (384)
.
T Consensus 162 ~ 162 (198)
T COG2263 162 T 162 (198)
T ss_pred e
Confidence 3
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.36 E-value=4.7e-12 Score=116.23 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=96.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~fD~VllD 256 (384)
++.+|||+|||+|..+..+++..++ +.|+|+|+|+++++.++++++..++.++.++++|+ ..++..+..+.||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5789999999999999999988754 68999999999999999999999998899999998 555432334689999997
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH---hcCCC
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL---KKRDV 333 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l---~~~~~ 333 (384)
.|. | |........ ...+..+|..+.++| ||||+++++|+ |+..+..++ +..++
T Consensus 119 ~~~---------p---~~~~~~~~~--~~~~~~~l~~i~~~L----kpgG~l~i~~~------~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 119 FPD---------P---WPKKRHHKR--RLVQPEFLALYARKL----KPGGEIHFATD------WEGYAEYMLEVLSAEGG 174 (202)
T ss_pred CCC---------C---CCCcccccc--ccCCHHHHHHHHHHc----CCCCEEEEEcC------CHHHHHHHHHHHHhCcc
Confidence 542 1 111000000 012456788888886 99999998874 445554444 34454
Q ss_pred EE
Q 016730 334 KL 335 (384)
Q Consensus 334 ~l 335 (384)
+.
T Consensus 175 ~~ 176 (202)
T PRK00121 175 FL 176 (202)
T ss_pred cc
Confidence 43
No 51
>PRK14968 putative methyltransferase; Provisional
Probab=99.35 E-value=1.9e-11 Score=109.71 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=106.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCcccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKV 244 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~~ 244 (384)
+.+....+...++.+|||+|||+|..+..++.. ...|+++|+++..++.+++++...++.+ +.++..|.....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence 344455555678899999999999999998887 3689999999999999999999988876 778888876532
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
....||.|++++|+...+-.....+ .+......-.........++..+.++| ||||.+++..+++.. .+-+
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~L----k~gG~~~~~~~~~~~---~~~l 157 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYL----KPGGRILLLQSSLTG---EDEV 157 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhc----CCCeEEEEEEcccCC---HHHH
Confidence 2247999999999754331111000 000000000001233456788888886 999999988877643 2334
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
..++++.++++..
T Consensus 158 ~~~~~~~g~~~~~ 170 (188)
T PRK14968 158 LEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHCCCeeee
Confidence 4566666766543
No 52
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.34 E-value=7.7e-12 Score=127.96 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=73.3
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--cCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNTV 250 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--~~~~~f 250 (384)
.+.+.+|++|||+|||+|..+..++... ..|+|+|+|+.+++.+++|++.+|++++.+.++|+...... +....|
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCC
Confidence 3466789999999999999999988864 58999999999999999999999999999999998754211 223579
Q ss_pred CEEEEcCCCCCC
Q 016730 251 DRVLLDAPCSGT 262 (384)
Q Consensus 251 D~VllDaPCSg~ 262 (384)
|+|++|||++|.
T Consensus 369 D~Vi~dPPr~g~ 380 (443)
T PRK13168 369 DKVLLDPPRAGA 380 (443)
T ss_pred CEEEECcCCcCh
Confidence 999999998654
No 53
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.9e-12 Score=127.61 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=91.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~ 248 (384)
+...++..++++|||+.||.|++|+++|.. ..+|+|+|+++..++.+++|++.+|+.|+.+..+|+..+...+ .+.
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 345567778999999999999999999964 3589999999999999999999999999999999998875433 345
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||.|++|||-+|.+ .++++...++ +|- ++||++|
T Consensus 362 ~~d~VvvDPPR~G~~------------------------~~~lk~l~~~-----~p~-~IvYVSC 396 (432)
T COG2265 362 KPDVVVVDPPRAGAD------------------------REVLKQLAKL-----KPK-RIVYVSC 396 (432)
T ss_pred CCCEEEECCCCCCCC------------------------HHHHHHHHhc-----CCC-cEEEEeC
Confidence 899999999988876 2345555554 554 6899999
No 54
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=3.3e-12 Score=117.74 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=73.5
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+|+++||++|||+|||+|..|..++.+.+..+.|+++|+++...+.+++|++++|+.|+.+..+|+...... ...
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~--~ap 141 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE--EAP 141 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG--G-S
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc--CCC
Confidence 345678999999999999999999999999988889999999999999999999999999999999998764322 368
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
||+|++.+.|
T Consensus 142 fD~I~v~~a~ 151 (209)
T PF01135_consen 142 FDRIIVTAAV 151 (209)
T ss_dssp EEEEEESSBB
T ss_pred cCEEEEeecc
Confidence 9999998764
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=3.9e-11 Score=108.32 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=93.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+|.+|||+|||+|..+..++...+ .++|+|+|.++.+++.++++++++|+.++.++++|+.++.. .++||.|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh
Confidence 488999999999999988876543 47899999999999999999999999889999999987632 36899999863
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc---CCCE
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK---RDVK 334 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~---~~~~ 334 (384)
.+ . ...++..+.++| +|||+++.. +....+..+..+.++ .+++
T Consensus 118 ----~~------------~----------~~~~~~~~~~~L----kpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 118 ----LA------------S----------LNVLLELTLNLL----KVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ----hh------------C----------HHHHHHHHHHhc----CCCCEEEEE----cCCCcHHHHHHHHHhhhhcCce
Confidence 00 0 123455566665 999999865 345556666666655 4777
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
.++.
T Consensus 164 ~~~~ 167 (181)
T TIGR00138 164 PLEV 167 (181)
T ss_pred Eeec
Confidence 7665
No 56
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.29 E-value=4e-11 Score=111.22 Aligned_cols=138 Identities=16% Similarity=0.265 Sum_probs=112.1
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCC-----ceEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCCc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----GLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNEL 241 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~-----g~V~a~D~~~~rl~~l~~n~~r~g~~---~v~~~~~D~~~~ 241 (384)
.+..|+|.+|++|||+|+|+|-.|.-|....++. ++|+.+|+|+++|...+++.++.++. .+.++++|+.++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3556788899999999999999999999988764 79999999999999999999887774 378999999999
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
| +++..||...+ +.|+ |. ....| +.|+.|.+.| ||||++. |-.++.+|.
T Consensus 172 p--Fdd~s~D~yTi-----afGI-RN---------------~th~~-k~l~EAYRVL----KpGGrf~---cLeFskv~~ 220 (296)
T KOG1540|consen 172 P--FDDDSFDAYTI-----AFGI-RN---------------VTHIQ-KALREAYRVL----KPGGRFS---CLEFSKVEN 220 (296)
T ss_pred C--CCCCcceeEEE-----ecce-ec---------------CCCHH-HHHHHHHHhc----CCCcEEE---EEEcccccc
Confidence 8 55689999865 3443 21 11122 3679999986 9999887 889999998
Q ss_pred HHHHHHHhcCCCEEeec
Q 016730 322 AVIDYALKKRDVKLVPC 338 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~ 338 (384)
+.+++|.+...+.++|+
T Consensus 221 ~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPV 237 (296)
T ss_pred HHHHHHHHhhhhhhhch
Confidence 88999988877766664
No 57
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.29 E-value=5e-11 Score=111.07 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=91.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+++|.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++++.++.++.++++|+..++. ..++
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 114 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--DDNS 114 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--CCCC
Confidence 34456778899999999999999999999876668999999999999999999999999889999999987652 3478
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|+++-. +...+ . ..++|..+.+.| +|||+++..+
T Consensus 115 fD~V~~~~~------l~~~~------~----------~~~~l~~~~~~L----k~gG~l~~~~ 151 (231)
T TIGR02752 115 FDYVTIGFG------LRNVP------D----------YMQVLREMYRVV----KPGGKVVCLE 151 (231)
T ss_pred ccEEEEecc------cccCC------C----------HHHHHHHHHHHc----CcCeEEEEEE
Confidence 999997532 11111 1 124678888875 9999998654
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=4e-11 Score=108.82 Aligned_cols=121 Identities=20% Similarity=0.169 Sum_probs=93.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
+|.+|||+|||+|..+..++...+ .++|+++|+++.+++.++++++.+|++++.+.++|+.+++. .++||.|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEEEcc
Confidence 488999999999999998888665 47999999999999999999999999889999999987654 36899999852
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
.+ .. ..++..+.+.| ||||++++...+. ....+..+.+..|..+.
T Consensus 121 ----~~------------~~----------~~~l~~~~~~L----kpGG~lv~~~~~~----~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 ----VA------------SL----------SDLVELCLPLL----KPGGRFLALKGRD----PEEEIAELPKALGGKVE 165 (187)
T ss_pred ----cc------------CH----------HHHHHHHHHhc----CCCeEEEEEeCCC----hHHHHHHHHHhcCceEe
Confidence 00 01 23667777875 9999999876553 33344555555565544
No 59
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.6e-11 Score=109.66 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=80.4
Q ss_pred cceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
.|.++-|----.....+|++++|++||++|||+|..|..||++.+ +|+++|+.+.-.+.+++|++.+|+.||.+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 455655532223346678999999999999999999999999974 89999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCEEEEcCC
Q 016730 237 DGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaP 258 (384)
|+..-- .....||+|++.+.
T Consensus 128 DG~~G~--~~~aPyD~I~Vtaa 147 (209)
T COG2518 128 DGSKGW--PEEAPYDRIIVTAA 147 (209)
T ss_pred CcccCC--CCCCCcCEEEEeec
Confidence 998642 22378999999765
No 60
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.27 E-value=6.2e-11 Score=107.33 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=85.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc------cccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~------~~~~~~ 248 (384)
.+++|++|||+|||||+.+.+++......++|+++|+++.+ +..++.+++.|..+.. .....+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45789999999999999999999987666799999999864 2345677778876532 112346
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+||+|++|+++...|... ...... ...+.+++..+++.| +|||+++... ..+++-++++..+
T Consensus 98 ~~D~V~~~~~~~~~g~~~----------~~~~~~-~~~~~~~l~~~~~~L----kpgG~lvi~~--~~~~~~~~~l~~l 159 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWD----------IDHLRS-IDLVELALDIAKEVL----KPKGNFVVKV--FQGEEIDEYLNEL 159 (188)
T ss_pred CccEEEcCCCCCCCCCcc----------ccHHHH-HHHHHHHHHHHHHHc----cCCCEEEEEE--ccCccHHHHHHHH
Confidence 799999997654444321 111111 234677889999986 9999998753 3333334555443
No 61
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.27 E-value=5.1e-11 Score=109.91 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=71.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.++++++|||+|||+|..|..++.+. +.|+++|+++.+++.++++++++|+.++.+..+|+..... ..+.
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 144 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP--AYAP 144 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--cCCC
Confidence 3455778899999999999999998888774 4799999999999999999999999999999999865321 2268
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
||+|+++++|
T Consensus 145 fD~I~~~~~~ 154 (212)
T PRK00312 145 FDRILVTAAA 154 (212)
T ss_pred cCEEEEccCc
Confidence 9999998764
No 62
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.27 E-value=1.7e-10 Score=115.79 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=100.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+++.+|||+|||+|..+..++...+ ...|+|+|+|+.+++.+++|++++|. ++.++++|...... ....+||.|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l-~~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM-PSEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc-ccCCCccEEEE
Confidence 34567999999999999988887654 37899999999999999999999987 68888999865321 11257999999
Q ss_pred cCCCCCCCcCCC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 256 DAPCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 256 DaPCSg~G~~~r-------~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
|||....+-... .|...+.-. .+.-...++++..+.+.| +|||.+++.. .. ...+-|..++
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG----~dGL~~yr~Ii~~a~~~L----kpgG~lilEi---G~-~Q~e~V~~ll 393 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDF----SDGLSCIRTLAQGAPDRL----AEGGFLLLEH---GF-DQGAAVRGVL 393 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCC----CchHHHHHHHHHHHHHhc----CCCcEEEEEE---Cc-cHHHHHHHHH
Confidence 999866553221 122222111 112234667888888875 9999987533 22 3334455555
Q ss_pred hcCCCEEe
Q 016730 329 KKRDVKLV 336 (384)
Q Consensus 329 ~~~~~~l~ 336 (384)
+..++..+
T Consensus 394 ~~~Gf~~v 401 (423)
T PRK14966 394 AENGFSGV 401 (423)
T ss_pred HHCCCcEE
Confidence 55565443
No 63
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.26 E-value=3.4e-11 Score=117.21 Aligned_cols=122 Identities=24% Similarity=0.310 Sum_probs=97.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~ 248 (384)
.+.+..+++|+.|||-.||+||.... |.+++ ..++++|++.+++.-++.|++.+|+....+... |+++++ ++..
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiE-agl~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l~~~ 263 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIE-AGLMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--LRDN 263 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHh-hhhcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--CCCC
Confidence 34455689999999999999997554 44554 689999999999999999999999988766666 999988 4445
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||.|.+|||+--+-. .....+..+..++|+.+.+.| |+||++|+.+-
T Consensus 264 ~vdaIatDPPYGrst~-------------~~~~~l~~Ly~~~le~~~evL----k~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTK-------------IKGEGLDELYEEALESASEVL----KPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccc-------------cccccHHHHHHHHHHHHHHHh----hcCcEEEEecC
Confidence 7999999999622211 111226678889999999986 99999999876
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.26 E-value=4e-11 Score=118.56 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=95.7
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|.+|.+....+......+|||+|||+|..+..+++..+. ..|+++|+|+.+++.+++|+++.++. ..+...|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~- 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI- 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-
Confidence 334444455555444568999999999999999987653 68999999999999999999999886 355667765421
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
.+.||.|++|||-- .|. . .. ...-.+++..+.+.| ||||.|++...+..+.|
T Consensus 259 ---~~~fDlIvsNPPFH-~g~-------~--~~-------~~~~~~~i~~a~~~L----kpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 ---KGRFDMIISNPPFH-DGI-------Q--TS-------LDAAQTLIRGAVRHL----NSGGELRIVANAFLPYP 310 (342)
T ss_pred ---CCCccEEEECCCcc-CCc-------c--cc-------HHHHHHHHHHHHHhc----CcCCEEEEEEeCCCChH
Confidence 26899999999931 110 0 00 112356788889886 99999999999988866
No 65
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.3e-11 Score=112.91 Aligned_cols=135 Identities=17% Similarity=0.248 Sum_probs=92.8
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|||+|||+|..++.++...++ ..|+|+|+|+..++.+++|++++|+.++.++..|..... . ++||.|++|||+=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~-~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---R-GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---C-CceeEEEeCCCCC
Confidence 7999999999999998887764 699999999999999999999999866666665654322 1 4899999999973
Q ss_pred CCC-------cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCC
Q 016730 261 GTG-------VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 261 g~G-------~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
-.- +++..|.....-.. ..-...++++..+.+.+ +|||.++.- ++. ...+. |..++.+.+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~----dGl~~~~~i~~~a~~~l----~~~g~l~le-~g~--~q~~~-v~~~~~~~~ 254 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGG----DGLEVYRRILGEAPDIL----KPGGVLILE-IGL--TQGEA-VKALFEDTG 254 (280)
T ss_pred CCcccccChhhhccCHHHHHccCc----cHHHHHHHHHHhhHHHc----CCCcEEEEE-ECC--CcHHH-HHHHHHhcC
Confidence 322 11223322222112 22346677899998886 998877643 333 22334 444444444
No 66
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.24 E-value=5.5e-11 Score=113.46 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=88.4
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH---cCCceEEEEecCCCCcccccCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r---~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
...+.++++++|||+|||+|..+..+++..+..+.|+|+|+|+.+++.++++... .+..++.++++|+..++. ++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--~~ 143 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--DD 143 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--CC
Confidence 4456677899999999999999988888876557999999999999999877642 234678999999988763 34
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
++||.|++.- + +..-+ . ..++|.++.+.| ||||+++.++.+-
T Consensus 144 ~sfD~V~~~~-----~-l~~~~------d----------~~~~l~ei~rvL----kpGG~l~i~d~~~ 185 (261)
T PLN02233 144 CYFDAITMGY-----G-LRNVV------D----------RLKAMQEMYRVL----KPGSRVSILDFNK 185 (261)
T ss_pred CCEeEEEEec-----c-cccCC------C----------HHHHHHHHHHHc----CcCcEEEEEECCC
Confidence 7899998621 1 11111 1 234688888885 9999999887653
No 67
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.23 E-value=9.1e-11 Score=116.88 Aligned_cols=122 Identities=19% Similarity=0.364 Sum_probs=98.4
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+....+..+||+|||+|..+.++|...++ ..++|+|+++.++..+.+++.+.|++|+.++++|+..+...+..+.||.|
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 34456789999999999999999999754 78999999999999999999999999999999999876444556899999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++.-|+ | |.+.+. .++ .+..+|..+.++| +|||.+...|.+..
T Consensus 197 ~lnFPd---------P---W~KkrH--RRl--v~~~fL~e~~RvL----kpGG~l~l~TD~~~ 239 (390)
T PRK14121 197 FVHFPV---------P---WDKKPH--RRV--ISEDFLNEALRVL----KPGGTLELRTDSEL 239 (390)
T ss_pred EEeCCC---------C---ccccch--hhc--cHHHHHHHHHHHc----CCCcEEEEEEECHH
Confidence 998764 2 222221 222 2577888888886 99999999997653
No 68
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.22 E-value=5.4e-10 Score=103.19 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=82.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc------cccCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNTV 250 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~------~~~~~~~f 250 (384)
++|.+|||+|||||+.+..+++..+..+.|+|+|+++- .++.++.++++|+.... ..+..++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 57889999999999999999999877789999999881 23456889999998753 11234789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
|.|++|+...-+| +|. .+..........+|..+.++| ||||+++..+ +..+....+-..+
T Consensus 119 D~V~S~~~~~~~g----~~~-------~d~~~~~~~~~~~L~~~~~~L----kpGG~~vi~~---~~~~~~~~~l~~l 178 (209)
T PRK11188 119 QVVMSDMAPNMSG----TPA-------VDIPRAMYLVELALDMCRDVL----APGGSFVVKV---FQGEGFDEYLREI 178 (209)
T ss_pred CEEecCCCCccCC----ChH-------HHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEE---ecCcCHHHHHHHH
Confidence 9999986211122 111 111111222356788888875 9999998754 4445543333333
No 69
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.22 E-value=7.3e-11 Score=118.25 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=69.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+..++.+|||+|||+|..++.++.. ...|+|+|+++..++.+++|++.+|++++.+.++|+..+.... ...||.|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 3346789999999999999988854 3589999999999999999999999999999999987653221 14699999
Q ss_pred EcCCCCC
Q 016730 255 LDAPCSG 261 (384)
Q Consensus 255 lDaPCSg 261 (384)
+|||-.|
T Consensus 306 ~DPPr~G 312 (374)
T TIGR02085 306 VNPPRRG 312 (374)
T ss_pred ECCCCCC
Confidence 9999653
No 70
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.22 E-value=2.8e-10 Score=108.85 Aligned_cols=113 Identities=22% Similarity=0.261 Sum_probs=89.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
...+++|++|||+|||+|..+..++..++..++|+++|+++.+++.++++...+|+.++.+..+|+..++. ..+.||.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--~~~~fD~ 149 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--ADNSVDV 149 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--CCCceeE
Confidence 34567899999999999988888888777667999999999999999999999999899998999877652 3368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|+.+.- +...|+ ..+++..++++| ||||+++.+.-
T Consensus 150 Vi~~~v------~~~~~d----------------~~~~l~~~~r~L----kpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCV------INLSPD----------------KERVFKEAFRVL----KPGGRFAISDV 184 (272)
T ss_pred EEEcCc------ccCCCC----------------HHHHHHHHHHHc----CCCcEEEEEEe
Confidence 998632 111111 134788888886 99999998753
No 71
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=9.5e-11 Score=114.78 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=73.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++++|++++.++.+|+....... ..||
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~fD 151 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APYD 151 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCcc
Confidence 34568899999999999999999999988766789999999999999999999999999999999987654322 5799
Q ss_pred EEEEcCC
Q 016730 252 RVLLDAP 258 (384)
Q Consensus 252 ~VllDaP 258 (384)
+|+++..
T Consensus 152 ~Ii~~~g 158 (322)
T PRK13943 152 VIFVTVG 158 (322)
T ss_pred EEEECCc
Confidence 9999743
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.21 E-value=5.4e-11 Score=108.44 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=88.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllD 256 (384)
.+.+|||+|||+|..+..++...++ +.|+|+|+++.+++.+++++++.|+.|+.++++|+..++.. ...+.||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4568999999999999999988754 78999999999999999999999999999999999765422 233589999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.|. |..+-...... -.+..++..+.+.| ||||.|.++|
T Consensus 95 ~pd---------pw~k~~h~~~r-----~~~~~~l~~~~r~L----kpgG~l~~~t 132 (194)
T TIGR00091 95 FPD---------PWPKKRHNKRR-----ITQPHFLKEYANVL----KKGGVIHFKT 132 (194)
T ss_pred CCC---------cCCCCCccccc-----cCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 762 21110000000 11356788888886 9999998877
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=2.1e-10 Score=114.49 Aligned_cols=124 Identities=9% Similarity=0.008 Sum_probs=92.5
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCC
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNE 240 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~---~v~~~~~D~~~ 240 (384)
|.++.+....+....+.+|||+|||+|..+..+++..+ ..+|+++|+|+..++.+++|++.++.. ++.+...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 45566655666555567999999999999999998865 479999999999999999999988753 67887788754
Q ss_pred cccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 241 ~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.. ...+||.|+++||.---..+ +.. .-.+++..+.+.| +|||.|....
T Consensus 293 ~~---~~~~fDlIlsNPPfh~~~~~----------~~~-------ia~~l~~~a~~~L----kpGG~L~iV~ 340 (378)
T PRK15001 293 GV---EPFRFNAVLCNPPFHQQHAL----------TDN-------VAWEMFHHARRCL----KINGELYIVA 340 (378)
T ss_pred cC---CCCCEEEEEECcCcccCccC----------CHH-------HHHHHHHHHHHhc----ccCCEEEEEE
Confidence 22 23579999999996321111 111 1245788888886 9999998875
No 74
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=1.4e-10 Score=108.84 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=91.6
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc--
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-- 245 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~-- 245 (384)
+...++...++.+|||+|+|.|.-++.++..++..|+|+++|+++++++.+++|+++.|+. ++.++.+|+.+....+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 3344455566789999999999999999998887799999999999999999999999986 5899999997652211
Q ss_pred --CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 --GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 --~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..++||.|++|++ + ......+..++++| +|||.++.-.+
T Consensus 139 ~~~~~~fD~VfiDa~-------------k------------~~y~~~~~~~~~ll----~~GG~ii~dn~ 179 (234)
T PLN02781 139 NDPKPEFDFAFVDAD-------------K------------PNYVHFHEQLLKLV----KVGGIIAFDNT 179 (234)
T ss_pred CCCCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCeEEEEEcC
Confidence 1258999999986 1 12234677778875 99999987554
No 75
>PLN02476 O-methyltransferase
Probab=99.18 E-value=9.6e-11 Score=112.13 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=96.7
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~ 243 (384)
...++...++...+..+|||+|++.|.-|++++..++..|.|+++|.++++.+.+++|+++.|+. ++.++.+|+.+...
T Consensus 105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK 184 (278)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 33445555566667789999999999999999999887889999999999999999999999997 69999999876432
Q ss_pred cc----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 244 VL----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 244 ~~----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+ ..++||.|++|++ | ......++.++++| +|||.+|.-..-.
T Consensus 185 ~l~~~~~~~~FD~VFIDa~-------------K------------~~Y~~y~e~~l~lL----~~GGvIV~DNvL~ 231 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDAD-------------K------------RMYQDYFELLLQLV----RVGGVIVMDNVLW 231 (278)
T ss_pred HHHhcccCCCCCEEEECCC-------------H------------HHHHHHHHHHHHhc----CCCcEEEEecCcc
Confidence 11 1258999999997 1 22355677778875 9999998765533
No 76
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.18 E-value=4.1e-10 Score=116.92 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=99.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
++.+|||+|||+|..+..++...++ ..|+|+|+|+..++.+++|++++|+. ++.++.+|..... ..++||.|++|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~---~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI---EKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC---cCCCccEEEEC
Confidence 4568999999999999988887654 79999999999999999999999985 5888888875421 23589999999
Q ss_pred CCCCCCCcC--------CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 257 APCSGTGVI--------SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 257 aPCSg~G~~--------~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
||.....-. ...|...+.-..+ .....++++..+.+.| +|||.+++. +.. .. .+.|..++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~d----Gl~~~~~il~~a~~~L----~~gG~l~lE-ig~--~q-~~~v~~~~ 281 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEED----GLQAYFIIAENAKQFL----KPNGKIILE-IGF--KQ-EEAVTQIF 281 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCcc----HHHHHHHHHHHHHHhc----cCCCEEEEE-ECC--ch-HHHHHHHH
Confidence 998765432 1123332222222 2245677888888886 999999764 332 22 33444444
Q ss_pred hcCCCE
Q 016730 329 KKRDVK 334 (384)
Q Consensus 329 ~~~~~~ 334 (384)
.+.++.
T Consensus 282 ~~~g~~ 287 (506)
T PRK01544 282 LDHGYN 287 (506)
T ss_pred HhcCCC
Confidence 444443
No 77
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.18 E-value=2.8e-10 Score=102.57 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=83.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCc--------eEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--------~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~ 241 (384)
+.+.++++|+.|||-+||+|+.-+..+....+.. .+++.|++++.++.+++|++..|+.. +.+...|+..+
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 3445688999999999999998776655554422 38999999999999999999999865 78888999988
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+ ...+.+|.|++|||. -.....-..+..+..++++.+.+.+ ++ ..++.|++
T Consensus 101 ~--~~~~~~d~IvtnPPy--------------G~r~~~~~~~~~ly~~~~~~~~~~l----~~--~~v~l~~~ 151 (179)
T PF01170_consen 101 P--LPDGSVDAIVTNPPY--------------GRRLGSKKDLEKLYRQFLRELKRVL----KP--RAVFLTTS 151 (179)
T ss_dssp G--GTTSBSCEEEEE--S--------------TTSHCHHHHHHHHHHHHHHHHHCHS----TT--CEEEEEES
T ss_pred c--cccCCCCEEEECcch--------------hhhccCHHHHHHHHHHHHHHHHHHC----CC--CEEEEEEC
Confidence 7 233689999999994 2223333445677888888888875 77 55555543
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.8e-09 Score=103.35 Aligned_cols=128 Identities=21% Similarity=0.201 Sum_probs=99.7
Q ss_pred CCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc
Q 016730 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 164 d~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~ 243 (384)
|.+|.+...-|....+.+|||+|||-|-.++.+++..+ ...|+-+|+|...++.+++|++.+++++..+...|.....
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 67788888888887777999999999999999999876 4799999999999999999999999998655455554322
Q ss_pred ccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 244 ~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
. ++||.|+++||-- ... ......-.+|+..|.+.| ++||.|....-...+
T Consensus 222 -~--~kfd~IisNPPfh--------------~G~---~v~~~~~~~~i~~A~~~L----~~gGeL~iVan~~l~ 271 (300)
T COG2813 222 -E--GKFDLIISNPPFH--------------AGK---AVVHSLAQEIIAAAARHL----KPGGELWIVANRHLP 271 (300)
T ss_pred -c--ccccEEEeCCCcc--------------CCc---chhHHHHHHHHHHHHHhh----ccCCEEEEEEcCCCC
Confidence 1 4899999999931 111 112223346899999986 999999876654444
No 79
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.1e-10 Score=108.27 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=102.1
Q ss_pred CCcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCC
Q 016730 164 SASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE 240 (384)
Q Consensus 164 d~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~ 240 (384)
-+...++..+|. .++|.+|||+|||+|-.+...+.+ +...|+|+|+|+..++.+++|+.++|+.. +.....+...
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 356667777764 568999999999999977765555 45789999999999999999999999975 2222223322
Q ss_pred cccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 241 ~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
.+ ..++||+|+++- |+..-.++...+...+ ||||+++.|- |..+.
T Consensus 224 ~~---~~~~~DvIVANI-------------------------LA~vl~~La~~~~~~l----kpgg~lIlSG--Il~~q- 268 (300)
T COG2264 224 VP---ENGPFDVIVANI-------------------------LAEVLVELAPDIKRLL----KPGGRLILSG--ILEDQ- 268 (300)
T ss_pred hc---ccCcccEEEehh-------------------------hHHHHHHHHHHHHHHc----CCCceEEEEe--ehHhH-
Confidence 22 236899999852 4444556667777765 9999999987 55554
Q ss_pred HHHHHHHHhcCCCEEeec
Q 016730 321 EAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 321 e~vv~~~l~~~~~~l~~~ 338 (384)
++.|...+.+.++++++.
T Consensus 269 ~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 269 AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHHHHHHHHhCCCeEeEE
Confidence 667777777888888875
No 80
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.15 E-value=1.4e-10 Score=115.63 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=67.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC------------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG------------ 246 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~------------ 246 (384)
+.+|||+|||+|..|+.++... ..|+|+|+++..++.+++|++.+|++|+.+.++|+..+...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 4899999999999999999999999999999999876422110
Q ss_pred --CCCCCEEEEcCCCCCC
Q 016730 247 --LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 --~~~fD~VllDaPCSg~ 262 (384)
..+||.|++|||-+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 1259999999997543
No 81
>PLN02244 tocopherol O-methyltransferase
Probab=99.15 E-value=3.5e-10 Score=111.94 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=84.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+++.+|||+|||+|+.+.++++.. ...|+++|+++.+++.++++++..|+. ++.+..+|+..++. ..+.||.|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--EDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--CCCCccEEEE
Confidence 578899999999999999999876 368999999999999999999998874 68999999987653 3478999987
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.- ++..-|+ ..+++..+.++| ||||+++.+++.
T Consensus 193 ~~------~~~h~~d----------------~~~~l~e~~rvL----kpGG~lvi~~~~ 225 (340)
T PLN02244 193 ME------SGEHMPD----------------KRKFVQELARVA----APGGRIIIVTWC 225 (340)
T ss_pred CC------chhccCC----------------HHHHHHHHHHHc----CCCcEEEEEEec
Confidence 21 1111111 135677778875 999999988753
No 82
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.13 E-value=4.1e-10 Score=103.13 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..++.++... ...|+++|+++..++.+++|++.+|+.++.++++|+....... ...||.|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEEC
Confidence 568899999999999987544432 3689999999999999999999999989999999987543211 2469999999
Q ss_pred CCC
Q 016730 257 APC 259 (384)
Q Consensus 257 aPC 259 (384)
||.
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 994
No 83
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.12 E-value=9.1e-10 Score=104.50 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|||+|..+..+++. ...|+++|+|+.+++.+++++...|+. ++.++++|+.++.... .+.||.|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-ETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-CCCCCEEEe
Confidence 45679999999999999988875 368999999999999999999999874 6888888887764322 368999997
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
... +.+... ...+|..+.++| ||||+++....+
T Consensus 119 ~~v------------l~~~~~----------~~~~l~~~~~~L----kpgG~l~i~~~n 151 (255)
T PRK11036 119 HAV------------LEWVAD----------PKSVLQTLWSVL----RPGGALSLMFYN 151 (255)
T ss_pred hhH------------HHhhCC----------HHHHHHHHHHHc----CCCeEEEEEEEC
Confidence 433 111111 134677888875 999999865433
No 84
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.12 E-value=1.6e-10 Score=105.65 Aligned_cols=101 Identities=31% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++|+.|+||+||-|.+++.+|...+ ...|+|+|+++..++.+++|++.+++++ +.++++|++.+.. ...||+|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEE
Confidence 57899999999999999999988543 4689999999999999999999999987 7788999998765 37899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
++.|-++. ++|..|..++ |+||.+-|
T Consensus 175 m~lp~~~~--------------------------~fl~~~~~~~----~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPESSL--------------------------EFLDAALSLL----KEGGIIHY 200 (200)
T ss_dssp E--TSSGG--------------------------GGHHHHHHHE----EEEEEEEE
T ss_pred ECChHHHH--------------------------HHHHHHHHHh----cCCcEEEC
Confidence 99883221 3677788876 99999876
No 85
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.11 E-value=3.6e-10 Score=113.28 Aligned_cols=110 Identities=26% Similarity=0.323 Sum_probs=84.7
Q ss_pred hhhhcCCC-CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~-~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|++++.+.+.|+..+... ..
T Consensus 48 v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~ 124 (382)
T PRK04338 48 VLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--ER 124 (382)
T ss_pred HHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cC
Confidence 33444333 457999999999999999887664 358999999999999999999999999888899998764321 25
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.||+|++||| |++ ...|..|+..+ ++||.+ |.||
T Consensus 125 ~fD~V~lDP~--Gs~------------------------~~~l~~al~~~----~~~gil-yvSA 158 (382)
T PRK04338 125 KFDVVDIDPF--GSP------------------------APFLDSAIRSV----KRGGLL-CVTA 158 (382)
T ss_pred CCCEEEECCC--CCc------------------------HHHHHHHHHHh----cCCCEE-EEEe
Confidence 7999999998 443 23677777775 887666 4444
No 86
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.11 E-value=1.7e-09 Score=102.41 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+.+|.+|||+|||+|..+..++.. + ...|+|+|+|+.+++.+++|+++.++. .+.+..+| ..||.|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEE
Confidence 467999999999999877765543 3 347999999999999999999999883 33332221 2699999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCE
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~ 334 (384)
++.. ......++..+.+.| ||||+++.+.... +..+-+...+++.+++
T Consensus 185 ani~-------------------------~~~~~~l~~~~~~~L----kpgG~lilsgi~~---~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 185 ANIL-------------------------ANPLLELAPDLARLL----KPGGRLILSGILE---EQADEVLEAYEEAGFT 232 (250)
T ss_pred EcCc-------------------------HHHHHHHHHHHHHhc----CCCcEEEEEECcH---hhHHHHHHHHHHCCCE
Confidence 8632 011245677777775 9999999986432 3444455566777887
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
++..
T Consensus 233 ~~~~ 236 (250)
T PRK00517 233 LDEV 236 (250)
T ss_pred EEEE
Confidence 7653
No 87
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.11 E-value=3e-10 Score=112.91 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=66.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---------C---
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---------G--- 246 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---------~--- 246 (384)
+.+|||+|||+|..++.++... ..|+|+|+++..++.+++|++.+|++|+.++.+|+.++.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3479999999999999888864 479999999999999999999999999999999987643210 0
Q ss_pred --CCCCCEEEEcCCCCCC
Q 016730 247 --LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 --~~~fD~VllDaPCSg~ 262 (384)
...||.|++|||-+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 0248999999996554
No 88
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=1.2e-09 Score=105.63 Aligned_cols=135 Identities=17% Similarity=0.153 Sum_probs=91.3
Q ss_pred CcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc
Q 016730 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (384)
Q Consensus 165 ~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~ 241 (384)
+...++..++. ..+|.+|||+|||+|..+..++.+ +...|+|+|+|+.+++.+++|+..+++.. +.+...|....
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 33444444443 457899999999999988776654 33689999999999999999999998864 45555543221
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
. .++||+|+++..+ ....+++..+.+.| ||||+++.|.. ..++-+
T Consensus 222 ~----~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~L----kpgG~li~sgi--~~~~~~ 266 (288)
T TIGR00406 222 I----EGKADVIVANILA-------------------------EVIKELYPQFSRLV----KPGGWLILSGI--LETQAQ 266 (288)
T ss_pred c----CCCceEEEEecCH-------------------------HHHHHHHHHHHHHc----CCCcEEEEEeC--cHhHHH
Confidence 1 2689999987421 11135677777775 99999998874 333334
Q ss_pred HHHHHHHhcCCCEEeec
Q 016730 322 AVIDYALKKRDVKLVPC 338 (384)
Q Consensus 322 ~vv~~~l~~~~~~l~~~ 338 (384)
++ ...+++. ++++..
T Consensus 267 ~v-~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 267 SV-CDAYEQG-FTVVEI 281 (288)
T ss_pred HH-HHHHHcc-CceeeE
Confidence 44 4444554 666543
No 89
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=5.5e-10 Score=103.15 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=97.3
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEe-cCCCCcccc
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN-YDGNELPKV 244 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~-~D~~~~~~~ 244 (384)
-.+...++......+||++|++.|.-|++||..++..|+++++|+++++.+.+++|+++.|+.+ ++.+. +|+.+....
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 3455556666678899999999999999999999867899999999999999999999999987 66766 487765432
Q ss_pred cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
...++||.|++|+- ...+.+.+..++++| +|||.+|.-.-...
T Consensus 128 ~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lL----r~GGliv~DNvl~~ 170 (219)
T COG4122 128 LLDGSFDLVFIDAD-------------------------KADYPEYLERALPLL----RPGGLIVADNVLFG 170 (219)
T ss_pred ccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHh----CCCcEEEEeecccC
Confidence 23489999999985 113456788889986 99999987665554
No 90
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.09 E-value=1.7e-09 Score=98.83 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=84.4
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+...++.+|||+|||+|..+.++++. ...|+|+|+|+.+++.+++++...++.++.+...|...++. .+.
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 95 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DGE 95 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CCC
Confidence 344555667789999999999999999875 35899999999999999999999999888888888876542 257
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|++-.. + .+ ..+. ....++..+.++| ||||.+++.+
T Consensus 96 fD~I~~~~~------~------~~-~~~~-------~~~~~l~~i~~~L----kpgG~~~~~~ 134 (197)
T PRK11207 96 YDFILSTVV------L------MF-LEAK-------TIPGLIANMQRCT----KPGGYNLIVA 134 (197)
T ss_pred cCEEEEecc------h------hh-CCHH-------HHHHHHHHHHHHc----CCCcEEEEEE
Confidence 999997322 1 01 1111 1345777777875 9999976543
No 91
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.09 E-value=2.7e-10 Score=110.18 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=88.8
Q ss_pred CcCcchhhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 165 ~ss~l~~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
++.+++..+|. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+|+..++.+++|++.+|+.....+. ......
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~ 222 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLV 222 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecccc
Confidence 34455555553 568999999999999977655444 4468999999999999999999999997632222 222222
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHH
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~ 322 (384)
..+||.|+.+-- +..-..+.....++ |+|||+++.|- |..++.+.
T Consensus 223 ----~~~~dlvvANI~-------------------------~~vL~~l~~~~~~~----l~~~G~lIlSG--Il~~~~~~ 267 (295)
T PF06325_consen 223 ----EGKFDLVVANIL-------------------------ADVLLELAPDIASL----LKPGGYLILSG--ILEEQEDE 267 (295)
T ss_dssp ----CS-EEEEEEES--------------------------HHHHHHHHHHCHHH----EEEEEEEEEEE--EEGGGHHH
T ss_pred ----cccCCEEEECCC-------------------------HHHHHHHHHHHHHh----hCCCCEEEEcc--ccHHHHHH
Confidence 278999998631 11223344444444 59999999865 56666666
Q ss_pred HHHHHHhcCCCEEeec
Q 016730 323 VIDYALKKRDVKLVPC 338 (384)
Q Consensus 323 vv~~~l~~~~~~l~~~ 338 (384)
|++.+ ++ +++++..
T Consensus 268 v~~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 268 VIEAY-KQ-GFELVEE 281 (295)
T ss_dssp HHHHH-HT-TEEEEEE
T ss_pred HHHHH-HC-CCEEEEE
Confidence 66655 55 8887654
No 92
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.06 E-value=4.2e-10 Score=101.79 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc--CCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~--~~~~fD~Vl 254 (384)
+|.+|||+|||+|..++..+++ +...|+.+|.|+..++.+++|++.+++.+ +.+++.|+....... ...+||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 6899999999999988865554 45699999999999999999999999986 888888876543222 357899999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||.
T Consensus 120 lDPPY 124 (183)
T PF03602_consen 120 LDPPY 124 (183)
T ss_dssp E--ST
T ss_pred ECCCc
Confidence 99995
No 93
>PRK08317 hypothetical protein; Provisional
Probab=99.06 E-value=3.2e-09 Score=98.29 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=86.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..++..++..+.++++|+++.++..++++... ...++.+...|+...+. ..+.|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~--~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPF--PDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCC--CCCCc
Confidence 3456678899999999999999999999875557999999999999999888433 23468888888876542 34789
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|.|+++.. + .+.. ....++.++.+.| ||||.++.+.+.
T Consensus 89 D~v~~~~~------~------~~~~----------~~~~~l~~~~~~L----~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRV------L------QHLE----------DPARALAEIARVL----RPGGRVVVLDTD 126 (241)
T ss_pred eEEEEech------h------hccC----------CHHHHHHHHHHHh----cCCcEEEEEecC
Confidence 99998532 1 0111 1244677788875 999999988764
No 94
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.05 E-value=2.1e-09 Score=98.11 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=86.6
Q ss_pred cccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q 016730 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (384)
Q Consensus 155 ~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~ 234 (384)
|..+.|-..-.++ .....+.+.++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++++..|++ +.+.
T Consensus 8 ~~~~~~~~~~~~~-~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~ 82 (195)
T TIGR00477 8 YFHKKYGMTTTHS-AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTD 82 (195)
T ss_pred HHHHhhCCCCchH-HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeE
Confidence 4444444442333 3345555556779999999999999999874 368999999999999999999888885 6666
Q ss_pred ecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 235 ~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
..|....+. .++||.|++..+.. ..... ....++..+.++| ||||+++..+
T Consensus 83 ~~d~~~~~~---~~~fD~I~~~~~~~-------------~~~~~-------~~~~~l~~~~~~L----kpgG~lli~~ 133 (195)
T TIGR00477 83 AYDINAAAL---NEDYDFIFSTVVFM-------------FLQAG-------RVPEIIANMQAHT----RPGGYNLIVA 133 (195)
T ss_pred eccchhccc---cCCCCEEEEecccc-------------cCCHH-------HHHHHHHHHHHHh----CCCcEEEEEE
Confidence 677654332 25799998754321 01111 1235677777775 9999966554
No 95
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.04 E-value=3.7e-09 Score=99.96 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+.++.+|||+|||+|..+..++..+ .+.++|+++|+|+.+++.+++++.+.|.. ++.++++|+..++. ..+|.|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEE
Confidence 3578899999999999998888764 34579999999999999999999998875 68888999877652 458998
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++.-. +.+. .. .....++.++.+.| ||||.++.+...
T Consensus 130 v~~~~------------l~~l-~~-------~~~~~~l~~i~~~L----kpGG~l~l~e~~ 166 (247)
T PRK15451 130 VLNFT------------LQFL-EP-------SERQALLDKIYQGL----NPGGALVLSEKF 166 (247)
T ss_pred ehhhH------------HHhC-CH-------HHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 86321 0111 11 11356788888886 999999998743
No 96
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.04 E-value=4.1e-09 Score=103.38 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=80.3
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
.+.+|.+|||+|||+|..+..++.. .+.|+++|.++++++.++.+....+. .++.++++|+.+++. ..++||+|
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V 202 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV 202 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence 3567889999999999998888763 36899999999999999988766554 468888999877653 23689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++- +++.. ......+|....++| ||||.++.+|
T Consensus 203 i~~------~vLeH----------------v~d~~~~L~~l~r~L----kPGG~liist 235 (322)
T PLN02396 203 LSL------EVIEH----------------VANPAEFCKSLSALT----IPNGATVLST 235 (322)
T ss_pred EEh------hHHHh----------------cCCHHHHHHHHHHHc----CCCcEEEEEE
Confidence 972 12111 111234677777775 9999999987
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=99.02 E-value=2.9e-09 Score=102.67 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=83.2
Q ss_pred CCceEEEeccCCChHHHHHHH-HccCCceEEEEeCCHHHHHHHHHHHHH-cCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAA-LMKNTGLIYANEMKASRLKSLTANLHR-MGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~-~~~~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
++++|+|+|||||+.|..+.. ...++++++++|+|+++++.+++++++ .|+.+ +.+..+|+.+..... +.||.|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence 678999999999988665443 444568999999999999999999965 88865 999999998764332 6899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+++ + ..+++ ..+.++|++..+.| +|||.+++-+
T Consensus 201 ~~A-L-------------i~~dk-------~~k~~vL~~l~~~L----kPGG~Lvlr~ 233 (296)
T PLN03075 201 LAA-L-------------VGMDK-------EEKVKVIEHLGKHM----APGALLMLRS 233 (296)
T ss_pred Eec-c-------------ccccc-------ccHHHHHHHHHHhc----CCCcEEEEec
Confidence 983 1 11111 12456888888886 9999999876
No 98
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=3.3e-09 Score=100.59 Aligned_cols=107 Identities=13% Similarity=0.212 Sum_probs=81.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..+++..+ .+.|+++|+|+.+++.+++++ .++.+..+|+..+.. ..+|
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~---~~~f 94 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP---PQAL 94 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC---CCCc
Confidence 3445567889999999999999999998864 379999999999999998764 457778888876532 2589
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|+|+++... .|... +.+++..+.+.| ||||.++.++
T Consensus 95 D~v~~~~~l------------~~~~d----------~~~~l~~~~~~L----kpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASL------------QWLPD----------HLELFPRLVSLL----APGGVLAVQM 130 (258)
T ss_pred cEEEEccCh------------hhCCC----------HHHHHHHHHHhc----CCCcEEEEEC
Confidence 999986541 12111 245778888875 9999998864
No 99
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=2.2e-09 Score=105.18 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=95.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..+|++||||.||-|.+|+.+|..-. ..|+|+|+|+..++.+++|++.+++.+ +..+++|++...... ..||+|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEE
Confidence 45799999999999999999988743 349999999999999999999999988 889999999886544 6899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc---cHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE---NEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E---Ne~vv~~~l~~~ 331 (384)
+.-|- .+.+.+..|.+.+ ++||.+.|-+-+-..+. .+..+..+..+.
T Consensus 262 m~~p~--------------------------~a~~fl~~A~~~~----k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPK--------------------------SAHEFLPLALELL----KDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred eCCCC--------------------------cchhhHHHHHHHh----hcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 98772 1234778889986 99999987653221111 334555555444
Q ss_pred C
Q 016730 332 D 332 (384)
Q Consensus 332 ~ 332 (384)
+
T Consensus 312 ~ 312 (341)
T COG2520 312 G 312 (341)
T ss_pred c
Confidence 3
No 100
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.4e-09 Score=97.53 Aligned_cols=125 Identities=25% Similarity=0.230 Sum_probs=86.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc------ccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~------~~~~~~ 249 (384)
.++|.+|+|+||||||.+..++..++..+.|+|+|+.+-.. +.+|.++.+|.+.... .+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 35799999999999999999999998888899999987432 3468888999886432 233456
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
+|+|++|+.--.+|.... +.. .+..+...|+.+...+|+|||.+|. ..+.-++++.+-+.++
T Consensus 112 ~DvV~sD~ap~~~g~~~~----------Dh~-----r~~~L~~~a~~~a~~vL~~~G~fv~---K~fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSV----------DHA-----RSMYLCELALEFALEVLKPGGSFVA---KVFQGEDFEDLLKALR 173 (205)
T ss_pred cceEEecCCCCcCCCccc----------cHH-----HHHHHHHHHHHHHHHeeCCCCeEEE---EEEeCCCHHHHHHHHH
Confidence 899999987555554322 211 2333444444444444699999985 4466666655554444
No 101
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.99 E-value=2.6e-09 Score=102.53 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=81.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 247 (384)
.....++++||++|||+|||-|+.+.++++..+ ..|+++.+|+...+.+++.+++.|+.+ +.+...|.++++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----
Confidence 445667899999999999999999999999863 689999999999999999999999965 888888877654
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
.+||+|+. .|++-.- ..+. -..++..+.++| ||||+++.-+++...
T Consensus 126 ~~fD~IvS------i~~~Ehv-------g~~~-------~~~~f~~~~~~L----kpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 126 GKFDRIVS------IEMFEHV-------GRKN-------YPAFFRKISRLL----KPGGRLVLQTITHRD 171 (273)
T ss_dssp -S-SEEEE------ESEGGGT-------CGGG-------HHHHHHHHHHHS----ETTEEEEEEEEEE--
T ss_pred CCCCEEEE------Eechhhc-------ChhH-------HHHHHHHHHHhc----CCCcEEEEEeccccc
Confidence 48999986 2332211 1111 234677777775 999999876665533
No 102
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.99 E-value=9.3e-10 Score=101.93 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
-+|.+|||+|||-|..+..||++ +..|+|+|++++.++.++....+.|+. +........++.. .+++||+|+|-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~--~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS--AGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh--cCCCccEEEEh
Confidence 36899999999999999888886 268999999999999999999998875 3343333333332 23799999982
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
++.+....-..+++++.+++ ||||.++.||-.
T Consensus 132 ----------------------EVlEHv~dp~~~~~~c~~lv----kP~G~lf~STin 163 (243)
T COG2227 132 ----------------------EVLEHVPDPESFLRACAKLV----KPGGILFLSTIN 163 (243)
T ss_pred ----------------------hHHHccCCHHHHHHHHHHHc----CCCcEEEEeccc
Confidence 12222222345889999987 999999999854
No 103
>PHA03411 putative methyltransferase; Provisional
Probab=98.99 E-value=8.2e-09 Score=98.28 Aligned_cols=148 Identities=13% Similarity=0.023 Sum_probs=95.4
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.+.++.+|||+|||+|..+..++...+. ..|+++|+++..++.+++++ .++.++++|+..+.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc---cCCCcEEE
Confidence 4455679999999999998888776533 58999999999999988764 357788899987642 26899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE--EEEeccC-CccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI--VYSTCSI-MVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l--vYsTCSi-~~~ENe~vv~~~l~~~ 331 (384)
+|||........+.....+.-.......+ .-.+++.....+| +|+|.+ +|++--+ +..=..+-...+|+..
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L----~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFI----VPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHhee----cCCceEEEEEeccccccccCCHHHHHHHHHhc
Confidence 99997554332222211111000000000 0134566666664 999965 3665222 3334455566788888
Q ss_pred CCEEee
Q 016730 332 DVKLVP 337 (384)
Q Consensus 332 ~~~l~~ 337 (384)
++.+-+
T Consensus 206 g~~~~~ 211 (279)
T PHA03411 206 GLVTYA 211 (279)
T ss_pred CcEecC
Confidence 887754
No 104
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.99 E-value=6.8e-10 Score=87.66 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=71.2
Q ss_pred EEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
||+|||+|..+..+++. +...|+++|+++.+++.++++....++ .+...|+..++ +.++.||.|++.--
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~--~~~~sfD~v~~~~~---- 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGV---SFRQGDAEDLP--FPDNSFDVVFSNSV---- 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTE---EEEESBTTSSS--S-TT-EEEEEEESH----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCc---hheeehHHhCc--cccccccccccccc----
Confidence 89999999999999988 347999999999999999988765444 48889999885 34589999998321
Q ss_pred CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 263 G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
..+. ..+.++++++.+.| ||||+++.
T Consensus 70 --------~~~~----------~~~~~~l~e~~rvL----k~gG~l~~ 95 (95)
T PF08241_consen 70 --------LHHL----------EDPEAALREIYRVL----KPGGRLVI 95 (95)
T ss_dssp --------GGGS----------SHHHHHHHHHHHHE----EEEEEEEE
T ss_pred --------eeec----------cCHHHHHHHHHHHc----CcCeEEeC
Confidence 0111 23466888889886 99999974
No 105
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.2e-09 Score=95.45 Aligned_cols=81 Identities=27% Similarity=0.316 Sum_probs=65.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC-CCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL-NTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~-~~fD~Vl 254 (384)
-.|.+|||++||+|+.++..+++ +...++.+|.|.+.+..+++|++.+|+. ++.++..|+..+...... +.||.|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 36899999999999988876665 4568999999999999999999999964 577778888854222221 3599999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||.
T Consensus 120 lDPPy 124 (187)
T COG0742 120 LDPPY 124 (187)
T ss_pred eCCCC
Confidence 99995
No 106
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.98 E-value=2.8e-09 Score=101.14 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
...+.+.++.+|||+|||+|..+..+++..+ .+.|+++|+|+.+++.++++ ++.+..+|+..+.. .+.|
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~f 90 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDT 90 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCc
Confidence 3445667889999999999999999998874 47899999999999988653 45677889876532 3689
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|++.... .|... +.+++..+.+.| ||||+++..
T Consensus 91 D~v~~~~~l------------~~~~d----------~~~~l~~~~~~L----kpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAAL------------QWVPE----------HADLLVRWVDEL----APGSWIAVQ 125 (255)
T ss_pred eEEEEehhh------------hhCCC----------HHHHHHHHHHhC----CCCcEEEEE
Confidence 999986541 12111 245677888875 999999875
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.98 E-value=6.8e-09 Score=81.67 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=80.5
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|+|+|||+|..+..++. .....++++|+++..+..+++.....+..++.+...|...... ....+||.|+++.||.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999888877 3457999999999999998865555566678888888887653 1236899999999975
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.. ...+..++..+.+.+ +|||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l----~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLL----KPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHc----CCCCEEEEE
Confidence 43 234566788888875 999999876
No 108
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.98 E-value=1.3e-09 Score=108.77 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=82.3
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
-+|||++||+|..++.++...++...|+++|+++..++.+++|++.+++.++.+++.|+..+.... ...||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDPf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDPF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCCC-
Confidence 489999999999999888875444689999999999999999999999998999999998764322 257999999997
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|+. ..+|+.|++.+ ++||.|. .||
T Consensus 124 -Gs~------------------------~~fld~al~~~----~~~glL~-vTa 147 (374)
T TIGR00308 124 -GTP------------------------APFVDSAIQAS----AERGLLL-VTA 147 (374)
T ss_pred -CCc------------------------HHHHHHHHHhc----ccCCEEE-EEe
Confidence 221 13778888886 8887664 443
No 109
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.97 E-value=5.5e-09 Score=99.78 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=84.5
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
.++..+.+.++.+|||+|||+|+.+..++... .+.|+++|+++.+++.++++... ..++.+.+.|+...+ +..+
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~--~~~~ 116 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD--FPEN 116 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--CCCC
Confidence 34455678899999999999999998888754 36899999999999999987654 346888889987654 2347
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+||+|++-.. -..... .....+|+++.++| ||||+++.+..
T Consensus 117 ~FD~V~s~~~-------------l~h~~~-------~d~~~~l~~i~r~L----kPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDA-------------ILHLSY-------ADKKKLFEKCYKWL----KPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhh-------------HHhCCH-------HHHHHHHHHHHHHc----CCCcEEEEEEe
Confidence 8999997211 001111 12356788888886 99999997653
No 110
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=3.6e-09 Score=96.22 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=65.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc-C-CCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-G-LNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~-~-~~~fD~Vl 254 (384)
+|.+|||+|||+|..++.++.+. ...|+++|.++..++.+++|++.+|+. ++.+++.|+....... . ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 58899999999999998887763 358999999999999999999999986 5888999985542211 1 13589999
Q ss_pred EcCCC
Q 016730 255 LDAPC 259 (384)
Q Consensus 255 lDaPC 259 (384)
+|||.
T Consensus 127 ~DPPy 131 (189)
T TIGR00095 127 LDPPF 131 (189)
T ss_pred ECcCC
Confidence 99996
No 111
>PLN02672 methionine S-methyltransferase
Probab=98.97 E-value=4.9e-09 Score=115.97 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----------------ceEEEEecCCCCcc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------TNTIVCNYDGNELP 242 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~----------------~~v~~~~~D~~~~~ 242 (384)
+.+|||+|||+|..++.++...++ +.|+|+|+|+..++.+++|++++++ .++.++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 468999999999999999988754 6999999999999999999998754 35889999987643
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCC-Cchhhcc------------CCHHHH---HHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISK-DESVKTS------------KSLEDI---QKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r-~p~~~~~------------~~~~~i---~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
... ..+||+|+.+||+=..+-+.. .|+++-. ...... ...-...++|+..+.+.| +|||
T Consensus 198 ~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L----~pgG 272 (1082)
T PLN02672 198 RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI----KPMG 272 (1082)
T ss_pred ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc----cCCC
Confidence 211 136999999999755543221 2222200 000010 234456788999999886 9999
Q ss_pred EEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 307 ~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
.++. -+.....++|.+.++++.+++.+.
T Consensus 273 ~l~l---EiG~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 273 IMIF---NMGGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred EEEE---EECccHHHHHHHHHHHHCCCCeeE
Confidence 8874 455666666765566666655443
No 112
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.97 E-value=7.7e-09 Score=98.76 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=96.7
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~ 247 (384)
+.+..|.++||++|||+|||-|+.+.++|+..+ .+|+++++|++..+.+++.++..|+. ++++...|-+++.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----
Confidence 345567899999999999999999999999873 68999999999999999999999998 7889888887765
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.||+|+. .|++-. ... +.....+..+.+.| +|||.++.-|-+....+-.....++
T Consensus 136 e~fDrIvS------vgmfEh-------vg~-------~~~~~ff~~~~~~L----~~~G~~llh~I~~~~~~~~~~~~~i 191 (283)
T COG2230 136 EPFDRIVS------VGMFEH-------VGK-------ENYDDFFKKVYALL----KPGGRMLLHSITGPDQEFRRFPDFI 191 (283)
T ss_pred cccceeee------hhhHHH-------hCc-------ccHHHHHHHHHhhc----CCCceEEEEEecCCCcccccchHHH
Confidence 45999975 333211 011 12345677777775 9999998776554442322344444
Q ss_pred Hhc
Q 016730 328 LKK 330 (384)
Q Consensus 328 l~~ 330 (384)
.+.
T Consensus 192 ~~y 194 (283)
T COG2230 192 DKY 194 (283)
T ss_pred HHh
Confidence 443
No 113
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.96 E-value=2.6e-09 Score=94.41 Aligned_cols=85 Identities=29% Similarity=0.305 Sum_probs=62.7
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC-CCEEEEcC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~-fD~VllDa 257 (384)
..|+|+|||-||-|.++|... ..|+|+|+++.|++.++.|++-+|+. ++.++++|..++........ ||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999974 47999999999999999999999975 79999999988754432222 89999999
Q ss_pred CCCCCCcCCC
Q 016730 258 PCSGTGVISK 267 (384)
Q Consensus 258 PCSg~G~~~r 267 (384)
|=.|......
T Consensus 78 PWGGp~Y~~~ 87 (163)
T PF09445_consen 78 PWGGPSYSKK 87 (163)
T ss_dssp -BSSGGGGGS
T ss_pred CCCCcccccc
Confidence 9888776553
No 114
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.96 E-value=2.7e-09 Score=100.87 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=84.2
Q ss_pred EeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc
Q 016730 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (384)
Q Consensus 162 ~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~ 241 (384)
+|...+......+...++.+|||+|||+|..+..++.. ...|+++|+|+.+++.++++.. ...++++|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 56666555566666666789999999999988887763 3689999999999999887643 234667888776
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+. ..+.||.|+++.+ +.|... ...+|.++.+.| ||||.++++|-
T Consensus 98 ~~--~~~~fD~V~s~~~------------l~~~~d----------~~~~l~~~~~~L----k~gG~l~~~~~ 141 (251)
T PRK10258 98 PL--ATATFDLAWSNLA------------VQWCGN----------LSTALRELYRVV----RPGGVVAFTTL 141 (251)
T ss_pred cC--CCCcEEEEEECch------------hhhcCC----------HHHHHHHHHHHc----CCCeEEEEEeC
Confidence 52 3468999997543 122211 235677888875 99999999873
No 115
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.96 E-value=3.1e-09 Score=86.28 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=73.8
Q ss_pred EEEeccCCChHHHHHHHHccC--CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKN--TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
|||+|||+|..+..++...+. ...++++|+|+.+++.++++....+. ++.+++.|+.+++.. .++||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~--~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS--DGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH--SSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc--CCCeeEEEE----
Confidence 799999999999999998722 26899999999999999999998777 688899999987643 369999997
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
++.. + . ..++++ +.+++++..+++ ||||
T Consensus 74 ~~~~-~------~-~~~~~~-------~~~ll~~~~~~l----~pgG 101 (101)
T PF13649_consen 74 SGLS-L------H-HLSPEE-------LEALLRRIARLL----RPGG 101 (101)
T ss_dssp -TTG-G------G-GSSHHH-------HHHHHHHHHHTE----EEEE
T ss_pred cCCc-c------C-CCCHHH-------HHHHHHHHHHHh----CCCC
Confidence 1111 1 1 133333 467888888886 9998
No 116
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.96 E-value=5.8e-10 Score=102.61 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=86.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc----CCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL----GLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~----~~~~fD~ 252 (384)
...+||++|++.|.-|+++|..+++.|+|+++|+++++.+.+++++++.|+. .+.++.+|+.+....+ ..+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 3458999999999999999999988899999999999999999999999985 5999999997642211 1257999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|++|+. | ..+...+..++++| +|||.++.-..-
T Consensus 125 VFiDa~-------------K------------~~y~~y~~~~~~ll----~~ggvii~DN~l 157 (205)
T PF01596_consen 125 VFIDAD-------------K------------RNYLEYFEKALPLL----RPGGVIIADNVL 157 (205)
T ss_dssp EEEEST-------------G------------GGHHHHHHHHHHHE----EEEEEEEEETTT
T ss_pred EEEccc-------------c------------cchhhHHHHHhhhc----cCCeEEEEcccc
Confidence 999986 1 12344566777775 999999987554
No 117
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.9e-09 Score=96.85 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=79.6
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccc
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~ 243 (384)
+...+....|++.||.+|++.|+|+|+.+..++..+.+.|+|+.+|.+..|.+.+.+..++.|+. |+.+.+-|.-....
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 33446678889999999999999999999999999999999999999999999999999999984 67777777654332
Q ss_pred ccCCCCCCEEEEcCC
Q 016730 244 VLGLNTVDRVLLDAP 258 (384)
Q Consensus 244 ~~~~~~fD~VllDaP 258 (384)
......+|.|++|.|
T Consensus 172 ~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP 186 (314)
T ss_pred cccccccceEEEcCC
Confidence 222478999999998
No 118
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.95 E-value=1.4e-08 Score=94.25 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=86.5
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
...+.+.++.+|||+|||+|..+..++...+....++++|+++.+++.+++++...+.. ++.+...|+...+. ..+.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 121 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--PDNS 121 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--CCCC
Confidence 44455667899999999999999999988753579999999999999999998776553 57888888877652 2368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
||+|++.- ++..-+ . ...+|..+.++| +|||.+++++-+.
T Consensus 122 ~D~I~~~~------~l~~~~------~----------~~~~l~~~~~~L----~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAF------GLRNVP------D----------IDKALREMYRVL----KPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEec------ccccCC------C----------HHHHHHHHHHhc----cCCcEEEEEEecC
Confidence 99998621 111000 1 134677777775 9999999876544
No 119
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=95.45 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=97.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEec----CCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNY----DGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~----D~~~~~~~~~~~~fD~ 252 (384)
.+..+||+|||+|..++.++.-++ .+.|+|+|+|+..+..+.+|++|+++.+ +.+++. |....-. ...++.|.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~~dl 225 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGKIDL 225 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-cccCceeE
Confidence 456899999999999999999887 5899999999999999999999999876 556544 3322221 22378999
Q ss_pred EEEcCCCCCCC-cCCCCchhhccCCHHHHH---HHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 253 VLLDAPCSGTG-VISKDESVKTSKSLEDIQ---KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 253 VllDaPCSg~G-~~~r~p~~~~~~~~~~i~---~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
++++||+--+- .-.-+|+++....+-.+. +....-..++.-|.++ |+|||.+.+.+-- ..+....|...+
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~----Lq~gg~~~le~~~--~~~~~~lv~~~m 299 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM----LQPGGFEQLELVE--RKEHSYLVRIWM 299 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh----cccCCeEEEEecc--cccCcHHHHHHH
Confidence 99999963222 111256665443332221 1222333445555565 5999999997642 255566777555
Q ss_pred h
Q 016730 329 K 329 (384)
Q Consensus 329 ~ 329 (384)
.
T Consensus 300 ~ 300 (328)
T KOG2904|consen 300 I 300 (328)
T ss_pred H
Confidence 4
No 120
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.92 E-value=3.5e-08 Score=90.66 Aligned_cols=140 Identities=23% Similarity=0.271 Sum_probs=94.9
Q ss_pred Ccchhhhc------CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~L------~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|.|++.++ .+++|.+||-+|||+|..-.|++...+..|.|+|+|.++...+.+-..+++- +|+..+..|++.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 55666554 3678999999999999999999999998899999999999888887766653 588888899998
Q ss_pred ccccc-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHH-HHHchhccCCCCcEEEEEe--ccCC
Q 016730 241 LPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA-AIDMVDANSKSGGYIVYST--CSIM 316 (384)
Q Consensus 241 ~~~~~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~-a~~~L~~~lkpGG~lvYsT--CSi~ 316 (384)
+.... --+.+|+|+.|.. .| -|.+|+.. |-.+ ||+||.++.+- -|+.
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---------Qp----------------~Qa~I~~~Na~~f----Lk~gG~~~i~iKa~siD 184 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---------QP----------------DQARIAALNARHF----LKPGGHLIISIKARSID 184 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---------ST----------------THHHHHHHHHHHH----EEEEEEEEEEEEHHHH-
T ss_pred hHHhhcccccccEEEecCC---------Ch----------------HHHHHHHHHHHhh----ccCCcEEEEEEecCccc
Confidence 64431 1258999999986 11 25555544 4455 49999988764 4454
Q ss_pred c-cccHHHHHH---HHhcCCCEEee
Q 016730 317 V-TENEAVIDY---ALKKRDVKLVP 337 (384)
Q Consensus 317 ~-~ENe~vv~~---~l~~~~~~l~~ 337 (384)
. .+.+++.+. -|++.++++.+
T Consensus 185 ~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 185 STADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCChhe
Confidence 4 455555553 33445676654
No 121
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.91 E-value=1e-08 Score=105.86 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=83.6
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+.+.++.+|||+|||+|+.+..++... ...|+|+|+|+.+++.++++....+ .++.+..+|....+ ++.++||
T Consensus 260 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--~~~~~fD 334 (475)
T PLN02336 260 DKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--YPDNSFD 334 (475)
T ss_pred HhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC--CCCCCEE
Confidence 34456788999999999999998888865 3589999999999999998876443 35888889987654 2236899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|++.. ++- +... ..+++..+.+.| ||||+++.++-..
T Consensus 335 ~I~s~~------~l~------h~~d----------~~~~l~~~~r~L----kpgG~l~i~~~~~ 372 (475)
T PLN02336 335 VIYSRD------TIL------HIQD----------KPALFRSFFKWL----KPGGKVLISDYCR 372 (475)
T ss_pred EEEECC------ccc------ccCC----------HHHHHHHHHHHc----CCCeEEEEEEecc
Confidence 999732 221 1111 235778888886 9999999886443
No 122
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.91 E-value=3e-08 Score=93.14 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++.+|||+|||+|..+..+++... +.+.|+++|+|+.+++.++++++..+. .++.++.+|+..++. ..+|.|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCEEe
Confidence 4788999999999999998888753 357999999999999999999988764 368888999987652 4589887
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+.-. + .+ ....+ ..+++.++.+.| ||||.++.+.-
T Consensus 128 ~~~~------l------~~-~~~~~-------~~~~l~~i~~~L----kpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFT------L------QF-LPPED-------RIALLTKIYEGL----NPNGVLVLSEK 162 (239)
T ss_pred eecc------h------hh-CCHHH-------HHHHHHHHHHhc----CCCeEEEEeec
Confidence 5321 1 11 11111 245788888885 99999998753
No 123
>PHA03412 putative methyltransferase; Provisional
Probab=98.91 E-value=3.6e-09 Score=98.59 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCceEEEeccCCChHHHHHHHHcc--CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~--~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+.+|||+|||+|..+..++..+. ....|+|+|+++..++.+++|.. ++.+.+.|+..... ..+||.|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 467999999999999999888753 24689999999999999998853 46777889876442 258999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE--------EEeccCCc-cccH--HHH
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV--------YSTCSIMV-TENE--AVI 324 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv--------YsTCSi~~-~ENe--~vv 324 (384)
|||..-... ++. ... ..-...-..++..|.+++ ++|+.|+ ||-|-... +|+. .-+
T Consensus 121 NPPY~~~~~--~d~--~ar------~~g~~~~~~li~~A~~Ll----~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 121 NPPFGKIKT--SDF--KGK------YTGAEFEYKVIERASQIA----RQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred CCCCCCccc--ccc--CCc------ccccHHHHHHHHHHHHHc----CCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 999865432 111 000 011234566888999864 8877654 55555442 3442 234
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
..++++-+..+.+
T Consensus 187 ~~~~~~~~~~~~~ 199 (241)
T PHA03412 187 KKFLDETGLEMNP 199 (241)
T ss_pred HHHHHhcCeeecC
Confidence 4566666655543
No 124
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.90 E-value=4.8e-08 Score=90.53 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=90.5
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
++|||+|||+|+.+..+++..++ ..|+++|+|+..++.+++++...|+. ++.+...|....+. .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~-- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGF-- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehH--
Confidence 37999999999999999887743 68999999999999999999998875 47888888765432 2579999852
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC---Cccc---------cHHHHHH
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTE---------NEAVIDY 326 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi---~~~E---------Ne~vv~~ 326 (384)
+++. .......++..+.++| ||||+++.++..- .+.+ ....+..
T Consensus 75 ----~~l~----------------~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 75 ----EVIH----------------HIKDKMDLFSNISRHL----KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred ----HHHH----------------hCCCHHHHHHHHHHHc----CCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 1110 0111345778888875 9999999876421 1111 1233445
Q ss_pred HHhcCCCEEeec
Q 016730 327 ALKKRDVKLVPC 338 (384)
Q Consensus 327 ~l~~~~~~l~~~ 338 (384)
++++.+++++..
T Consensus 131 ~l~~~Gf~~~~~ 142 (224)
T smart00828 131 LLARNNLRVVEG 142 (224)
T ss_pred HHHHCCCeEEEe
Confidence 666778877653
No 125
>PRK06922 hypothetical protein; Provisional
Probab=98.90 E-value=1.9e-08 Score=105.65 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=88.6
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.++..+|.+|||+|||+|..+..+++..++ +.|+|+|+|+.+++.+++++...+. ++.++++|+..++..+..++||.
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEE
Confidence 344557899999999999988888887654 7999999999999999998876664 57778899887764455578999
Q ss_pred EEEcCCCCC-CCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 253 VLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 253 VllDaPCSg-~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
|++.++--- ...++. .+. .+.. ....++|..+.+.| ||||+++.+.-++
T Consensus 491 VVsn~vLH~L~syIp~-~g~--~f~~-------edl~kiLreI~RVL----KPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIEY-EGK--KFNH-------EVIKKGLQSAYEVL----KPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhccc-ccc--cccH-------HHHHHHHHHHHHHc----CCCcEEEEEeCcc
Confidence 997643100 000000 000 0011 23356788888886 9999999875333
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=1.8e-08 Score=89.70 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=68.6
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~f 250 (384)
+..+++.++++|||+|||+|..|..+++. .++|+|+|+++..++.+++++.. ..++.++++|+..++. ....|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~--~~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL--PKLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc--cccCC
Confidence 44566778899999999999999999887 26899999999999999998864 4578899999988753 22469
Q ss_pred CEEEEcCCC
Q 016730 251 DRVLLDAPC 259 (384)
Q Consensus 251 D~VllDaPC 259 (384)
|.|+.|+|.
T Consensus 79 d~vi~n~Py 87 (169)
T smart00650 79 YKVVGNLPY 87 (169)
T ss_pred CEEEECCCc
Confidence 999999994
No 127
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.88 E-value=3.3e-08 Score=96.61 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=79.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+++.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++..-+..+ ..++.+...+...++.. ..||.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD~ 191 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFDT 191 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcCE
Confidence 45678999999999999988777664 23479999999998876544333333 23566777777766532 57999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
|++ .|++-. ..++ ...|..+.+.| ||||.||.+|..+...+
T Consensus 192 V~s------~gvL~H------~~dp----------~~~L~el~r~L----kpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 192 VFS------MGVLYH------RKSP----------LEHLKQLKHQL----VIKGELVLETLVIDGDL 232 (314)
T ss_pred EEE------cchhhc------cCCH----------HHHHHHHHHhc----CCCCEEEEEEEEecCcc
Confidence 996 334322 2222 23567777775 99999999987665443
No 128
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.87 E-value=4.9e-09 Score=101.36 Aligned_cols=92 Identities=22% Similarity=0.212 Sum_probs=78.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC--
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-- 247 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~-- 247 (384)
+..+|.+++|..+||++||.||.|..+++..++.+.|+|+|.|+.+++.++++++. ..++.+++.|..++......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 34566788999999999999999999999987678999999999999999998876 46799999999887544322
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
..||.|++|.-+|..-
T Consensus 89 ~~vDgIl~DLGvSs~Q 104 (296)
T PRK00050 89 GKVDGILLDLGVSSPQ 104 (296)
T ss_pred CccCEEEECCCccccc
Confidence 2799999999998873
No 129
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.87 E-value=7.8e-08 Score=93.69 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=90.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~ 248 (384)
.+..++..++.+|||+|||+|..+..+++..++ .+++++|. +..++.+++++++.|+. ++.++.+|+...+ + .
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~--~ 214 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y--P 214 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--C--C
Confidence 344556778899999999999999999998764 78999997 78999999999999985 5889999987533 2 3
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
.+|.|++- +++ ..+..+. -.++|+++.+.| ||||+++.....+...++
T Consensus 215 ~~D~v~~~------~~l-------h~~~~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 215 EADAVLFC------RIL-------YSANEQL-------STIMCKKAFDAM----RSGGRLLILDMVIDDPEN 262 (306)
T ss_pred CCCEEEeE------hhh-------hcCChHH-------HHHHHHHHHHhc----CCCCEEEEEEeccCCCCC
Confidence 47998761 111 1222222 246788999886 999999988765544444
No 130
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.87 E-value=2.7e-09 Score=104.08 Aligned_cols=169 Identities=20% Similarity=0.226 Sum_probs=101.5
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHc------cCCceEEEEeCCHHHHHHHHHHHHHcCCce-
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALM------KNTGLIYANEMKASRLKSLTANLHRMGVTN- 230 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~------~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~- 230 (384)
|.|+--..-+.+++.++.+.++++|+|.|||+|+....+...+ .....++|+|+++..+..++-|+.-.|+..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3333334445677888899999999999999999887777654 234689999999999999999987777543
Q ss_pred -EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCC--CchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 231 -TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 231 -v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r--~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
..+...|....+.......||.|+.+||.+..+.... ..+.+|... ...-...+..++.++++.| ++||+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~L----k~~G~ 178 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLL----KPGGR 178 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTE----EEEEE
T ss_pred cccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhc----ccccc
Confidence 3577788765543322468999999999877643111 011122211 0000111223778888886 99999
Q ss_pred EEEEecc-CCcccc-HHHHH-HHHhcCCC
Q 016730 308 IVYSTCS-IMVTEN-EAVID-YALKKRDV 333 (384)
Q Consensus 308 lvYsTCS-i~~~EN-e~vv~-~~l~~~~~ 333 (384)
+++..-+ ++-..+ +.-+. +++++..+
T Consensus 179 ~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i 207 (311)
T PF02384_consen 179 AAIILPNGFLFSSSSEKKIRKYLLENGYI 207 (311)
T ss_dssp EEEEEEHHHHHGSTHHHHHHHHHHHHEEE
T ss_pred eeEEecchhhhccchHHHHHHHHHhhchh
Confidence 8776654 332232 44554 77776543
No 131
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.85 E-value=3.8e-08 Score=95.14 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++.+|||+|||+|..+..++.. ...|+|+|+|+.+++.++++++..++ ++.+...|...... .++||.|++-.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEcc
Confidence 4459999999999999988874 36899999999999999999999998 78888888765432 36899999743
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+. ....+ ....++..+.+.| +|||++++.
T Consensus 193 vl~-------------~l~~~-------~~~~~l~~~~~~L----kpgG~~l~v 222 (287)
T PRK12335 193 VLM-------------FLNRE-------RIPAIIKNMQEHT----NPGGYNLIV 222 (287)
T ss_pred hhh-------------hCCHH-------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 210 01111 2345677777775 999997654
No 132
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.84 E-value=3.9e-08 Score=90.35 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=83.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
.+...++.+|||+|||+|..+..++...+..+.++++|+++..+..++++.. ...++.+..+|+.+.+. ..+.||+
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~--~~~~~D~ 109 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF--EDNSFDA 109 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC--CCCcEEE
Confidence 3344578999999999999999999887544689999999999999998876 33467888888887652 2368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
|++.-. +..- .+ -..+++.+.+.| +|||+++..+.+..
T Consensus 110 i~~~~~------~~~~---------~~-------~~~~l~~~~~~L----~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 110 VTIAFG------LRNV---------TD-------IQKALREMYRVL----KPGGRLVILEFSKP 147 (223)
T ss_pred EEEeee------eCCc---------cc-------HHHHHHHHHHHc----CCCcEEEEEEecCC
Confidence 986311 1110 01 124678888875 99999998776543
No 133
>PRK04457 spermidine synthase; Provisional
Probab=98.82 E-value=2.3e-08 Score=95.52 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|+|.|..+..++...+ ..+|+++|+++..++.+++++...+. .++.++.+|+..+.... .++||.|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEE
Confidence 3467899999999999999988875 47899999999999999998765443 57889999997753322 258999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
|+- .+.+. |. .. ...+++..+.+.| +|||+++...++-.+ .....++.+.+.+
T Consensus 143 D~~-~~~~~----~~--~l-----------~t~efl~~~~~~L----~pgGvlvin~~~~~~-~~~~~l~~l~~~F 195 (262)
T PRK04457 143 DGF-DGEGI----ID--AL-----------CTQPFFDDCRNAL----SSDGIFVVNLWSRDK-RYDRYLERLESSF 195 (262)
T ss_pred eCC-CCCCC----cc--cc-----------CcHHHHHHHHHhc----CCCcEEEEEcCCCch-hHHHHHHHHHHhc
Confidence 963 22221 11 00 1246778888875 999999986544322 2344455444444
No 134
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.81 E-value=2.9e-08 Score=99.75 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=80.9
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
....+.+++|++|||+|||+|+.+.++++..+ ..|+++|+|+.+++.++++++. + ++.+...|...+ .+.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~l-----~~~ 228 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRDL-----NGQ 228 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhhc-----CCC
Confidence 34456778999999999999999999988753 5899999999999999998853 3 366777787654 267
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
||.|++-. ++.. ... .....++..+.++| ||||+++..+.+
T Consensus 229 fD~Ivs~~------~~eh-------vg~-------~~~~~~l~~i~r~L----kpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVG------MFEH-------VGP-------KNYRTYFEVVRRCL----KPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeC------chhh-------CCh-------HHHHHHHHHHHHHc----CCCcEEEEEEcc
Confidence 99998632 1110 001 11234677777775 999999987643
No 135
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.79 E-value=2.6e-08 Score=94.19 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=89.0
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCccccc-
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL- 245 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~- 245 (384)
++...++....-.+||++|++.|.-|++++..++..|+|+++|.++++.+.+++++++.|+. +|.++.+|+.+....+
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 34344444444568999999999999999998887899999999999999999999999975 5899999987652221
Q ss_pred C----CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 G----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 ~----~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
. .++||.|++|+- + ......++.++++| +|||.||.=..
T Consensus 149 ~~~~~~~~fD~iFiDad------------------K-------~~Y~~y~~~~l~ll----~~GGviv~DNv 191 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD------------------K-------DNYINYHKRLIDLV----KVGGVIGYDNT 191 (247)
T ss_pred hccccCCcccEEEecCC------------------H-------HHhHHHHHHHHHhc----CCCeEEEEcCC
Confidence 1 258999999974 1 11234556667775 99999986543
No 136
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.79 E-value=4.2e-08 Score=96.45 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=79.8
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+++.+|.+|||+|||+|..+..++..- ...|+++|.|+..+...+...+..+. .++.+...|+..++. .+.||
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~FD 191 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKAFD 191 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCCcC
Confidence 4556678999999999999998888762 34799999999888665544444432 468888889887764 37899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.|++ .|++-+ ..++ ..+|..+.+.| +|||.++.+|-.
T Consensus 192 ~V~s------~~vl~H------~~dp----------~~~L~~l~~~L----kpGG~lvl~~~~ 228 (322)
T PRK15068 192 TVFS------MGVLYH------RRSP----------LDHLKQLKDQL----VPGGELVLETLV 228 (322)
T ss_pred EEEE------CChhhc------cCCH----------HHHHHHHHHhc----CCCcEEEEEEEE
Confidence 9996 234321 1122 24677777875 999999987643
No 137
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.79 E-value=2.6e-08 Score=91.06 Aligned_cols=133 Identities=16% Similarity=0.275 Sum_probs=93.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-ccccCCCCCCEEEEcC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDA 257 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~~~~~~~~fD~VllDa 257 (384)
...+||+|||.|...+.+|...++ ..++|+|++..++..+...+.+.|++|+.++++|+..+ ...+..+.+|.|.+.=
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 348999999999999999998875 78999999999999999999999999999999999984 3344457899999987
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH----h-cCC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL----K-KRD 332 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l----~-~~~ 332 (384)
| +|.-|-......+ .|..+|....+.| +|||.|...| .++....+.+ + +..
T Consensus 97 P---------DPWpK~rH~krRl-----~~~~fl~~~~~~L----~~gG~l~~~T------D~~~y~~~~~~~~~~~~~~ 152 (195)
T PF02390_consen 97 P---------DPWPKKRHHKRRL-----VNPEFLELLARVL----KPGGELYFAT------DVEEYAEWMLEQFEESHPG 152 (195)
T ss_dssp --------------SGGGGGGST-----TSHHHHHHHHHHE----EEEEEEEEEE------S-HHHHHHHHHHHHHHSTT
T ss_pred C---------CCCcccchhhhhc-----CCchHHHHHHHHc----CCCCEEEEEe------CCHHHHHHHHHHHHhcCcC
Confidence 7 3533322111111 3456777777775 9999998877 4444444333 3 246
Q ss_pred CEEe
Q 016730 333 VKLV 336 (384)
Q Consensus 333 ~~l~ 336 (384)
++.+
T Consensus 153 f~~~ 156 (195)
T PF02390_consen 153 FENI 156 (195)
T ss_dssp EEEE
T ss_pred eEEc
Confidence 6665
No 138
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.77 E-value=2.9e-08 Score=90.19 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=76.8
Q ss_pred eCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 016730 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~ 242 (384)
....|.+ ..+++.-++.++||+|||.|.-+..||++ +-.|+|+|+|+..++.+++.+++.+++ +.+...|.....
T Consensus 16 ~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 16 TPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD 90 (192)
T ss_dssp ----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS
T ss_pred CCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc
Confidence 3333443 33444445669999999999999999986 358999999999999999999998987 888888877654
Q ss_pred cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 243 ~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
. .+.||.|++.. ++. ...++.+ .+++...-..+ +|||++++.|
T Consensus 91 ~---~~~yD~I~st~------v~~-------fL~~~~~-------~~i~~~m~~~~----~pGG~~li~~ 133 (192)
T PF03848_consen 91 F---PEEYDFIVSTV------VFM-------FLQRELR-------PQIIENMKAAT----KPGGYNLIVT 133 (192)
T ss_dssp ----TTTEEEEEEES------SGG-------GS-GGGH-------HHHHHHHHHTE----EEEEEEEEEE
T ss_pred c---cCCcCEEEEEE------Eec-------cCCHHHH-------HHHHHHHHhhc----CCcEEEEEEE
Confidence 2 26799998632 211 1111111 23445555554 9999999865
No 139
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.77 E-value=3.7e-08 Score=92.21 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=83.2
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-c------eEEEEecCCCCcccccCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-T------NTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~------~v~~~~~D~~~~~~~~~~ 247 (384)
.+-.|.+|||+|||.|-.|.+||.+- ..|+|+|+++.+++.+++. +.+.. . .+.+.+.|+....
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~----- 156 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT----- 156 (282)
T ss_pred cccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc-----
Confidence 34457889999999999999999873 6899999999999999998 44332 1 1334444544432
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
+.||.|+| .++.+....-.+++...+++| ||||+|+.+| +|--...|+
T Consensus 157 ~~fDaVvc----------------------sevleHV~dp~~~l~~l~~~l----kP~G~lfitt------inrt~lS~~ 204 (282)
T KOG1270|consen 157 GKFDAVVC----------------------SEVLEHVKDPQEFLNCLSALL----KPNGRLFITT------INRTILSFA 204 (282)
T ss_pred cccceeee----------------------HHHHHHHhCHHHHHHHHHHHh----CCCCceEeee------hhhhHHHhh
Confidence 56999997 344455555567889999986 9999999988 455555555
Q ss_pred Hh
Q 016730 328 LK 329 (384)
Q Consensus 328 l~ 329 (384)
..
T Consensus 205 ~~ 206 (282)
T KOG1270|consen 205 GT 206 (282)
T ss_pred cc
Confidence 43
No 140
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.77 E-value=8.8e-08 Score=94.50 Aligned_cols=129 Identities=17% Similarity=0.104 Sum_probs=89.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.++.+|||+|||+|..+..+++..+. ..|+++|.++.+++.++++.. ..++.++.+|+..++. ..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~--~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF--PTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC--CCCceeEEEEc
Confidence 46889999999999999888887643 689999999999999998764 3456778899887652 23689999973
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc--------------ccHH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT--------------ENEA 322 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~--------------ENe~ 322 (384)
.. +.. ...+ .++|+++.+.| ||||+++.+.-. ++. -.++
T Consensus 186 ~~------L~~------~~d~----------~~~L~e~~rvL----kPGG~LvIi~~~-~p~~~~~r~~~~~~~~~~t~e 238 (340)
T PLN02490 186 GS------IEY------WPDP----------QRGIKEAYRVL----KIGGKACLIGPV-HPTFWLSRFFADVWMLFPKEE 238 (340)
T ss_pred Ch------hhh------CCCH----------HHHHHHHHHhc----CCCcEEEEEEec-CcchhHHHHhhhhhccCCCHH
Confidence 22 111 1111 23688888886 999999875321 111 1334
Q ss_pred HHHHHHhcCCCEEeec
Q 016730 323 VIDYALKKRDVKLVPC 338 (384)
Q Consensus 323 vv~~~l~~~~~~l~~~ 338 (384)
.+...+++.+|+.+.+
T Consensus 239 El~~lL~~aGF~~V~i 254 (340)
T PLN02490 239 EYIEWFTKAGFKDVKL 254 (340)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 4445666677776543
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.77 E-value=1.5e-07 Score=87.76 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=81.6
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+.+.++.+|||+|||+|..+..+++. ...++++|+++..++.+++++...+. .+.+...|...++.. ..++||
T Consensus 42 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~fD 116 (233)
T PRK05134 42 EHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE-HPGQFD 116 (233)
T ss_pred HhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh-cCCCcc
Confidence 3334567889999999999998888774 25799999999999999999988776 466667777655422 236899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+|++.-..... + . ...+|..+.+.| +|||+++.+++.
T Consensus 117 ~Ii~~~~l~~~------~------~----------~~~~l~~~~~~L----~~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHV------P------D----------PASFVRACAKLV----KPGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhcc------C------C----------HHHHHHHHHHHc----CCCcEEEEEecC
Confidence 99974321111 0 1 124677777775 999999988764
No 142
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.77 E-value=5.5e-09 Score=96.00 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=97.7
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC--ceEEEEecCCCCcccccCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~ 248 (384)
+....++.|++|||.|.|-|..++..++. +...|+.+|.|+.-++.++-|--.-++ .++.++.+|+.++-+.++++
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 34456788999999999999977654443 445899999999999888766432222 25788999999887778889
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCCcc---ccHHHH
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIMVT---ENEAVI 324 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~~~---ENe~vv 324 (384)
+||+|+-|||- ++..- .+ .-.++.++..+.| ||||+|+ |..-+-..- .-..=|
T Consensus 205 sfDaIiHDPPR-------------fS~Ag-eL-----YseefY~El~RiL----krgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287)
T COG2521 205 SFDAIIHDPPR-------------FSLAG-EL-----YSEEFYRELYRIL----KRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287)
T ss_pred ccceEeeCCCc-------------cchhh-hH-----hHHHHHHHHHHHc----CcCCcEEEEeCCCCcccccCChhHHH
Confidence 99999999993 22111 11 2245666677775 9999998 554332222 223345
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
..-|++-+|+.+.
T Consensus 262 a~RLr~vGF~~v~ 274 (287)
T COG2521 262 AERLRRVGFEVVK 274 (287)
T ss_pred HHHHHhcCceeee
Confidence 5666777887654
No 143
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.75 E-value=1.9e-07 Score=86.27 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+..+++.. ..++++|+++..+..+++++.+.+..++.+...|+...+... .++||.|++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehh
Confidence 47899999999999888777642 469999999999999999999888767788888876654322 26899999742
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
. + .. ......+|..+.+.| +|||.++.++|.
T Consensus 121 ~------l------~~----------~~~~~~~l~~~~~~L----~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 V------L------EH----------VPDPQAFIRACAQLL----KPGGILFFSTIN 151 (224)
T ss_pred H------H------Hh----------CCCHHHHHHHHHHhc----CCCcEEEEEecC
Confidence 1 0 00 111235777777775 999999988764
No 144
>PRK00811 spermidine synthase; Provisional
Probab=98.74 E-value=9.7e-08 Score=92.21 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=81.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
...+||++|+|.|+.+..+++.. +..+|+++|+|+..++.+++++..++ -.++.++.+|+..+... ..++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 45799999999999988887642 33689999999999999999987653 24588999999875432 2368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|++|++-- .| | ... + ...++++.+.+.| +|||.++..+-|
T Consensus 154 Ii~D~~dp-~~-----~-------~~~---l--~t~ef~~~~~~~L----~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDP-VG-----P-------AEG---L--FTKEFYENCKRAL----KEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCC-CC-----c-------hhh---h--hHHHHHHHHHHhc----CCCcEEEEeCCC
Confidence 99997410 01 1 011 1 2356677777775 999999875433
No 145
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.74 E-value=2.5e-08 Score=89.56 Aligned_cols=134 Identities=25% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc------ccccC--
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLG-- 246 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~------~~~~~-- 246 (384)
.+.++.+|||+||||||+|..+++.....+.|+|+|+.+. ....++..+.+|.... .....
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhcccc
Confidence 3335689999999999999999998755689999999876 1224555556665432 11111
Q ss_pred CCCCCEEEEcC--CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 247 LNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 247 ~~~fD~VllDa--PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
.+.||.|++|. +|+|... .... ...++....|.-|...| +|||.+|.-+-.. .+.++++
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~----------~d~~---~~~~l~~~~l~~a~~~L----~~gG~~v~K~~~~--~~~~~~~ 149 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRN----------IDEF---ISIRLILSQLLLALELL----KPGGTFVIKVFKG--PEIEELI 149 (181)
T ss_dssp TCSESEEEE-------SSHH----------SSHH---HHHHHHHHHHHHHHHHH----CTTEEEEEEESSS--TTSHHHH
T ss_pred ccCcceeccccccCCCCchh----------hHHH---HHHHHHHHHHHHHHhhh----cCCCEEEEEeccC--ccHHHHH
Confidence 25899999998 3333311 1111 12234444455666665 9999988655442 2334555
Q ss_pred HHHHhcC-CCEEeec
Q 016730 325 DYALKKR-DVKLVPC 338 (384)
Q Consensus 325 ~~~l~~~-~~~l~~~ 338 (384)
..+-..+ .++++++
T Consensus 150 ~~l~~~F~~v~~~Kp 164 (181)
T PF01728_consen 150 YLLKRCFSKVKIVKP 164 (181)
T ss_dssp HHHHHHHHHEEEEE-
T ss_pred HHHHhCCeEEEEEEC
Confidence 5444433 3555543
No 146
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.72 E-value=1.8e-07 Score=91.52 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=65.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEe-cCCCCcccc--cCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCN-YDGNELPKV--LGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~-v~~~~-~D~~~~~~~--~~~~~fD~ 252 (384)
++.+|||+|||+|+....++....+ ..++|+|+|+..++.+++|++++ ++.+ +.+.. .|...+... ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 5689999999999998888887654 68999999999999999999999 7864 55543 343333211 12368999
Q ss_pred EEEcCCCCCCC
Q 016730 253 VLLDAPCSGTG 263 (384)
Q Consensus 253 VllDaPCSg~G 263 (384)
|+|+||.-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999975443
No 147
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.71 E-value=2.8e-09 Score=85.97 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred EEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~ 262 (384)
||+|||+|..+..+++..+ ..+++++|+|+.+++.+++++...+..+......+..+.......++||.|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~------ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS------ 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE------
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh------
Confidence 7999999999999999874 479999999999999999999998876655555554444332222589999972
Q ss_pred CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEE
Q 016730 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (384)
Q Consensus 263 G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~l 308 (384)
+++.. . .....+|.++.++| ||||.|
T Consensus 74 ~vl~~------l----------~~~~~~l~~~~~~L----~pgG~l 99 (99)
T PF08242_consen 74 NVLHH------L----------EDIEAVLRNIYRLL----KPGGIL 99 (99)
T ss_dssp -TTS------------------S-HHHHHHHHTTT-----TSS-EE
T ss_pred hhHhh------h----------hhHHHHHHHHHHHc----CCCCCC
Confidence 22211 1 11235778888875 999986
No 148
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.70 E-value=1.6e-07 Score=97.01 Aligned_cols=120 Identities=19% Similarity=0.146 Sum_probs=83.3
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
......+.+.++.+|||+|||+|..+..+++.. ..|+|+|+++.+++..+.... ...++.+++.|+......+..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCC
Confidence 344555666678899999999999999998863 589999999999987654211 245788888998643222334
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++||.|++..++. + .+..+ ..+++..+.+.| ||||++++...++.
T Consensus 102 ~~fD~I~~~~~l~------------~-l~~~~-------~~~~l~~~~r~L----k~gG~l~~~d~~~~ 146 (475)
T PLN02336 102 GSVDLIFSNWLLM------------Y-LSDKE-------VENLAERMVKWL----KVGGYIFFRESCFH 146 (475)
T ss_pred CCEEEEehhhhHH------------h-CCHHH-------HHHHHHHHHHhc----CCCeEEEEEeccCC
Confidence 7899999866521 1 11111 245777777775 99999988654443
No 149
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.70 E-value=2.6e-07 Score=90.44 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCcccccCCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
+|.+|||+|||+|..+..++.. ...|+|+|+|+.+++.++++++..+ ..++.+...|...+ .+.||.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence 5789999999999999988874 3589999999999999999988763 23567777776543 268999
Q ss_pred EEE
Q 016730 253 VLL 255 (384)
Q Consensus 253 Vll 255 (384)
|++
T Consensus 216 Vv~ 218 (315)
T PLN02585 216 VTC 218 (315)
T ss_pred EEE
Confidence 986
No 150
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.70 E-value=2.6e-07 Score=85.57 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+.++.+|||+|||+|..+..++.. ...|+|+|+|+.++..+++++...+. .++.+...|+...+ ++||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEE
Confidence 456889999999999999988774 25899999999999999999988776 46888888887654 5799998
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
+
T Consensus 125 ~ 125 (219)
T TIGR02021 125 C 125 (219)
T ss_pred E
Confidence 6
No 151
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.6e-08 Score=99.80 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC---
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN--- 248 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~--- 248 (384)
..++..++..+||+|||+|..++.+|+.. ++|++++++++.+.-++.|++.+|++|..++++-+.++-......
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCC
Confidence 34567788999999999999998888754 679999999999999999999999999999999666653222112
Q ss_pred CCC-EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 249 TVD-RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 249 ~fD-~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
+=+ ++++|||-.|.-. .+..+++.. +.--+++|.+|..+.+
T Consensus 454 ~~~~v~iiDPpR~Glh~-------------------------~~ik~l~~~----~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 454 SETLVAIIDPPRKGLHM-------------------------KVIKALRAY----KNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCceEEEECCCcccccH-------------------------HHHHHHHhc----cCccceEEEEcCHHHh
Confidence 334 8899999644421 122233322 5456999999998654
No 152
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.69 E-value=1.2e-07 Score=87.98 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+.+|||+|||+|..+.++++..+. ..++++|+++..+..+++++. .++.++.+|....+. ..++||+|+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--EDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--CCCceeEEEEhh
Confidence 4578999999999999999988753 679999999999988887654 367778888877652 336899999864
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.. .+... -.++|..+.+.| ||||.+++++
T Consensus 107 ~l------------~~~~~----------~~~~l~~~~~~L----~~~G~l~~~~ 135 (240)
T TIGR02072 107 AL------------QWCDD----------LSQALSELARVL----KPGGLLAFST 135 (240)
T ss_pred hh------------hhccC----------HHHHHHHHHHHc----CCCcEEEEEe
Confidence 32 11111 124677777775 9999999875
No 153
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.68 E-value=5.2e-08 Score=89.24 Aligned_cols=117 Identities=25% Similarity=0.386 Sum_probs=84.9
Q ss_pred ceEEEeccCCChHHHHHHHHccC----Cc----eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc------ccc
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN----TG----LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVL 245 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~----~g----~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~------~~~ 245 (384)
.+|+|+|||||+.+..+++.+-. .+ .|+|+|+.+- .-+..|..+.+|.+... ..+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 48999999999999999987632 22 3999997652 23567778889988752 335
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
.+++.|.|+||.. ||+..... +.+ ..|.+||..|+....++|||||.+|- -|+.-++...+-
T Consensus 112 ggekAdlVvcDGA----------PDvTGlHd---~DE--y~Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslLy 173 (294)
T KOG1099|consen 112 GGEKADLVVCDGA----------PDVTGLHD---LDE--YVQAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLLY 173 (294)
T ss_pred CCCCccEEEeCCC----------CCcccccc---HHH--HHHHHHHHHHHHHHhheecCCCeeeh---hhhccCchHHHH
Confidence 6679999999976 44433322 222 36788999999988889999999983 466666655443
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.67 E-value=9.6e-08 Score=89.13 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=99.6
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC-CCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~-~~fD~VllDaP 258 (384)
..+||+|||.|...+++|+.-++ .-.+|+|+....+..+...+.+.|++|+.+++.|+..+...+.. ++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999999998875 57999999999999999999999999999999999987555443 48999999777
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
||.-|-+.....+ +|..+|....+.| ||||.|-+.| .|+...++
T Consensus 129 ---------DPWpKkRH~KRRl-----~~~~fl~~~a~~L----k~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 129 ---------DPWPKKRHHKRRL-----TQPEFLKLYARKL----KPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred ---------CCCCCcccccccc-----CCHHHHHHHHHHc----cCCCEEEEEe------cCHHHHHH
Confidence 4655444333333 5677888888885 9999999988 56666655
No 155
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.66 E-value=1.2e-07 Score=85.65 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=75.9
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..|....-.++||+|||.|-.|..||.+. ..++|+|+++..++.+++++.. ..+|.+...|.... ++.++||
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~---~P~~~FD 108 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF---WPEGRFD 108 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT------SS-EE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC---CCCCCee
Confidence 34554556789999999999999998875 4799999999999999999874 47899999888654 3458999
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCC-HHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKS-LEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~-~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.|++ |.. .+..+ .+++ +..+......| +|||.||..+-
T Consensus 109 LIV~----SEV---------lYYL~~~~~L-------~~~l~~l~~~L----~pgG~LV~g~~ 147 (201)
T PF05401_consen 109 LIVL----SEV---------LYYLDDAEDL-------RAALDRLVAAL----APGGHLVFGHA 147 (201)
T ss_dssp EEEE----ES----------GGGSSSHHHH-------HHHHHHHHHTE----EEEEEEEEEEE
T ss_pred EEEE----ehH---------hHcCCCHHHH-------HHHHHHHHHHh----CCCCEEEEEEe
Confidence 9996 333 33333 2333 34556666665 99999999753
No 156
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.65 E-value=3.7e-07 Score=88.89 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCC---CE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTV---DR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~f---D~ 252 (384)
.++.+|||+|||+|.||..+++.+.....++++|+|+++++.+++++.... --++..+++|........ ..+ +.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~--~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP--PEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--cccccCCe
Confidence 467899999999999999999887534689999999999999999887632 124667789987642222 222 33
Q ss_pred --EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 253 --VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 253 --VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
++++.+ .|.+ .+++ ...+|+.+.+.| +|||.++...=
T Consensus 140 ~~~~~gs~---~~~~----------~~~e-------~~~~L~~i~~~L----~pgG~~lig~d 178 (301)
T TIGR03438 140 LGFFPGST---IGNF----------TPEE-------AVAFLRRIRQLL----GPGGGLLIGVD 178 (301)
T ss_pred EEEEeccc---ccCC----------CHHH-------HHHHHHHHHHhc----CCCCEEEEecc
Confidence 333222 2221 2222 356788888875 99999997543
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.64 E-value=2.5e-07 Score=88.51 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred CCceEEEeccCCCh----HHHHHHHHccC----CceEEEEeCCHHHHHHHHHHHH------Hc-------------C---
Q 016730 178 EKERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLH------RM-------------G--- 227 (384)
Q Consensus 178 ~g~~VLD~cagpGg----kt~~la~~~~~----~g~V~a~D~~~~rl~~l~~n~~------r~-------------g--- 227 (384)
++.+|||+|||+|- .++.+++..+. ...|+|+|+|+.+++.+++.+- .+ |
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 46799999999996 45555565432 4689999999999999987531 00 0
Q ss_pred ----C-ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC
Q 016730 228 ----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (384)
Q Consensus 228 ----~-~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l 302 (384)
+ .+|.+...|....+. ..++||.|+|- . + ....+. ..+.+++....+.|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~cr----n--v-------l~yf~~-------~~~~~~l~~l~~~L---- 232 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--PLGDFDLIFCR----N--V-------LIYFDE-------PTQRKLLNRFAEAL---- 232 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--ccCCCCEEEec----h--h-------HHhCCH-------HHHHHHHHHHHHHh----
Confidence 1 257888888887643 23789999961 1 1 111111 24567888888886
Q ss_pred CCCcEEEEEec
Q 016730 303 KSGGYIVYSTC 313 (384)
Q Consensus 303 kpGG~lvYsTC 313 (384)
+|||+|+....
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999997643
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=4.6e-07 Score=86.86 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=81.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCCCCCCEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
...+||++|+|.|+.+..++... ....++++|+++..++.+++++..++ -.++.+...|+..+.... .++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEE
Confidence 34599999999999887776653 23689999999999999999886653 245777788887643222 2689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
++|++-. .+ |. ..+ ...+.++.+.+.| +|||.++..++|..
T Consensus 150 i~D~~~~-~~-----~~-------~~l-----~~~ef~~~~~~~L----~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 150 IVDSTDP-VG-----PA-------ETL-----FTKEFYELLKKAL----NEDGIFVAQSESPW 190 (270)
T ss_pred EEeCCCC-CC-----cc-------cch-----hHHHHHHHHHHHh----CCCcEEEEcCCCcc
Confidence 9998621 11 10 000 1245666777775 99999998877643
No 159
>PRK01581 speE spermidine synthase; Validated
Probab=98.62 E-value=4.8e-07 Score=89.48 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=79.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH--H---HHc--CCceEEEEecCCCCcccccCCCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--L---HRM--GVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n--~---~r~--g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
..+||++|+|.|+....+++. ++..+|+++|+|+..++.+++. + .+. .-.++.++.+|+..+.... .+.||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCcc
Confidence 459999999999866555543 3346899999999999999962 2 222 2356889999999764322 36899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHH
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~v 323 (384)
+|++|.|= |... . .. .-...+++..+.+.| +|||++|.-+-|. .....+
T Consensus 229 VIIvDl~D---------P~~~---~---~~--~LyT~EFy~~~~~~L----kPgGV~V~Qs~sp--~~~~~~ 277 (374)
T PRK01581 229 VIIIDFPD---------PATE---L---LS--TLYTSELFARIATFL----TEDGAFVCQSNSP--ADAPLV 277 (374)
T ss_pred EEEEcCCC---------cccc---c---hh--hhhHHHHHHHHHHhc----CCCcEEEEecCCh--hhhHHH
Confidence 99999861 1100 0 00 112256777777775 9999988764433 344444
No 160
>PRK10742 putative methyltransferase; Provisional
Probab=98.62 E-value=3.5e-07 Score=85.85 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=75.2
Q ss_pred CcchhhhcCCCCCc--eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc------CC---ceEEEEe
Q 016730 167 SFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM------GV---TNTIVCN 235 (384)
Q Consensus 167 s~l~~~~L~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~------g~---~~v~~~~ 235 (384)
....+.++++++|. +|||++||.|.-++.++.+ ++.|+++|.++.....++++++++ +. .++.+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45678888899998 9999999999999998887 357999999999999999999996 42 5688889
Q ss_pred cCCCCcccccCCCCCCEEEEcCCC
Q 016730 236 YDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 236 ~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+|+..+..... ..||+|.+|||.
T Consensus 152 ~da~~~L~~~~-~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLTALTDIT-PRPQVVYLDPMF 174 (250)
T ss_pred CcHHHHHhhCC-CCCcEEEECCCC
Confidence 99887644332 479999999995
No 161
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.61 E-value=3e-07 Score=88.17 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=57.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.++.+|||+|||+|..+..++...+.. ..|+++|+|+.+++.++++. .++.+..+|+..++ +..+.||.|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp--~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLP--FADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCC--CcCCceeEEE
Confidence 456789999999999999998876542 37999999999999887642 45777788988766 3347899998
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
.
T Consensus 157 ~ 157 (272)
T PRK11088 157 R 157 (272)
T ss_pred E
Confidence 5
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.61 E-value=1e-07 Score=92.49 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=74.2
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~ 247 (384)
..+..+.+.++++|||+|||+|..|..+++.. ..|+|+|+|+..++.+++++...+ ..++.++++|+.... +
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--~-- 99 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--F-- 99 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--c--
Confidence 45556677899999999999999999988863 579999999999999999998877 467999999998754 2
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
..||.|+.|+|...+.
T Consensus 100 ~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 100 PYFDVCVANVPYQISS 115 (294)
T ss_pred cccCEEEecCCcccCc
Confidence 5799999999986553
No 163
>PRK03612 spermidine synthase; Provisional
Probab=98.59 E-value=2.7e-07 Score=96.41 Aligned_cols=136 Identities=12% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH--HHHc-----CCceEEEEecCCCCcccccCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--LHRM-----GVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n--~~r~-----g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
++..+|||+|+|.|+.+..+++. +...+|+++|+|++.++.++++ +..+ .-.++.++++|++++.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence 45679999999999988887764 3226899999999999999984 3322 1246888999998754322 368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc-ccHHHHHHHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT-ENEAVIDYAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~-ENe~vv~~~l 328 (384)
||.|++|+|-.. .|..... ...++++.+.+.| ||||.++..++|-... +.-..+...+
T Consensus 374 fDvIi~D~~~~~------~~~~~~L-----------~t~ef~~~~~~~L----~pgG~lv~~~~~~~~~~~~~~~i~~~l 432 (521)
T PRK03612 374 FDVIIVDLPDPS------NPALGKL-----------YSVEFYRLLKRRL----APDGLLVVQSTSPYFAPKAFWSIEATL 432 (521)
T ss_pred CCEEEEeCCCCC------Ccchhcc-----------chHHHHHHHHHhc----CCCeEEEEecCCcccchHHHHHHHHHH
Confidence 999999987311 1111001 1245667777775 9999999877654422 2112233444
Q ss_pred hcCCCEE
Q 016730 329 KKRDVKL 335 (384)
Q Consensus 329 ~~~~~~l 335 (384)
++.++..
T Consensus 433 ~~~gf~v 439 (521)
T PRK03612 433 EAAGLAT 439 (521)
T ss_pred HHcCCEE
Confidence 5556643
No 164
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.57 E-value=1.5e-07 Score=85.80 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.+-.+|.|+|||||..|-.|+++.+. ..|+++|.|+.+++.+++.+ .++.+..+|.+.... ...+|+++.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p---~~~~dllfa 98 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP---EQPTDLLFA 98 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC---CCccchhhh
Confidence 445679999999999999999999975 79999999999999986653 577888899887543 368999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|- +.|-++. -++|.+.+..| .|||.|..---
T Consensus 99 NAv--------------lqWlpdH--------~~ll~rL~~~L----~Pgg~LAVQmP 130 (257)
T COG4106 99 NAV--------------LQWLPDH--------PELLPRLVSQL----APGGVLAVQMP 130 (257)
T ss_pred hhh--------------hhhcccc--------HHHHHHHHHhh----CCCceEEEECC
Confidence 874 3333333 24666777775 99999986543
No 165
>PLN02366 spermidine synthase
Probab=98.55 E-value=8.1e-07 Score=86.73 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--C--ceEEEEecCCCCcccccCCCCCCE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V--TNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~--~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
....+||++|+|.|+....+++. ++..+|+.+|+|+..++.+++.+...+ . .++.++.+|+..+-.....++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34679999999999988888765 334689999999999999999886643 2 358999999976643222368999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|++|.+-. .| | ... -...++++.+.+.| +|||.++.-
T Consensus 169 Ii~D~~dp-~~-----~-------~~~-----L~t~ef~~~~~~~L----~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDP-VG-----P-------AQE-----LFEKPFFESVARAL----RPGGVVCTQ 205 (308)
T ss_pred EEEcCCCC-CC-----c-------hhh-----hhHHHHHHHHHHhc----CCCcEEEEC
Confidence 99998621 11 1 000 12356777777775 999999753
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.55 E-value=2e-07 Score=88.82 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=70.3
Q ss_pred cchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC
Q 016730 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 168 ~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 247 (384)
...+..+++.+|++|||+|||+|..|..+++. ...|+++|+++..++.+++++.. ..++.++++|+..++ +
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~--~-- 89 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD--L-- 89 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC--c--
Confidence 34455667788999999999999999999987 25899999999999999988865 457999999998765 2
Q ss_pred CCCCEEEEcCCCC
Q 016730 248 NTVDRVLLDAPCS 260 (384)
Q Consensus 248 ~~fD~VllDaPCS 260 (384)
..||.|+.++|..
T Consensus 90 ~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 PEFNKVVSNLPYQ 102 (258)
T ss_pred hhceEEEEcCCcc
Confidence 4589999999964
No 167
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.9e-06 Score=77.91 Aligned_cols=146 Identities=24% Similarity=0.291 Sum_probs=103.6
Q ss_pred EEEeCCc-CcchhhhcC------CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 160 YMLQSAS-SFLPVMALA------PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 160 ~~~Qd~s-s~l~~~~L~------~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|-.=++- |-|++..|+ +++|++||=+||++|....|++...+ .|.|+|+|.++.....+-..+++ -.|+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~ 127 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNII 127 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCce
Confidence 4444443 556666653 67899999999999999999999998 69999999999988888777765 35788
Q ss_pred EEecCCCCccccc-CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHH-HHHchhccCCCCcEEE-
Q 016730 233 VCNYDGNELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILA-AIDMVDANSKSGGYIV- 309 (384)
Q Consensus 233 ~~~~D~~~~~~~~-~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~-a~~~L~~~lkpGG~lv- 309 (384)
.+..|++.+.... --+.+|+|..|.. ...|.+|+.. |-.+ ||+||+++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~F----Lk~~G~~~i 178 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFF----LKKGGYVVI 178 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEecC-------------------------CchHHHHHHHHHHHh----cccCCeEEE
Confidence 8889998764321 1167999999975 1246666654 4445 59999554
Q ss_pred -EEeccCCcccc-HHHHHHHH---hcCCCEEee
Q 016730 310 -YSTCSIMVTEN-EAVIDYAL---KKRDVKLVP 337 (384)
Q Consensus 310 -YsTCSi~~~EN-e~vv~~~l---~~~~~~l~~ 337 (384)
.=.-|+...+. +++.+.-. +..+|++.+
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 45777877555 44444333 344677655
No 168
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.50 E-value=1.3e-06 Score=86.50 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=103.1
Q ss_pred CCCCcccccceEEEeCCcCc---chh---hhcCCCCCceEEEeccCCChHHHHHHHHccCC-------------------
Q 016730 149 IGATPEYMAGFYMLQSASSF---LPV---MALAPQEKERVIDMAAAPGGKTTYIAALMKNT------------------- 203 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~---l~~---~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~------------------- 203 (384)
.+..+.++.||=.-+.++.. +++ .+.+.++++.++|-.||+|...+..|.+..+-
T Consensus 156 ttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~ 235 (381)
T COG0116 156 TTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKD 235 (381)
T ss_pred CCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHH
Confidence 44457888997655655532 222 22356778899999999999888766655321
Q ss_pred ------------c-------eEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCC
Q 016730 204 ------------G-------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263 (384)
Q Consensus 204 ------------g-------~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G 263 (384)
+ .++|+|+|+..++.++.|+.+.|+.. |.+..+|++.+...+ +.+|+|++|||+ |
T Consensus 236 lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPY---G 310 (381)
T COG0116 236 LWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPY---G 310 (381)
T ss_pred HHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCc---c
Confidence 1 47899999999999999999999965 889999999987654 689999999996 2
Q ss_pred cCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 264 ~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
. +. -+. .....++.++...+-+.+ +.-++.|++|
T Consensus 311 e-------Rl-g~~---~~v~~LY~~fg~~lk~~~----~~ws~~v~tt 344 (381)
T COG0116 311 E-------RL-GSE---ALVAKLYREFGRTLKRLL----AGWSRYVFTT 344 (381)
T ss_pred h-------hc-CCh---hhHHHHHHHHHHHHHHHh----cCCceEEEEc
Confidence 1 11 111 233446677777766664 6667777766
No 169
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.6e-06 Score=77.45 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=89.4
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcc------cccCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELP------KVLGLNT 249 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~------~~~~~~~ 249 (384)
.|+++|||+|||||..+...-++.++.|.|.++|+-. -.-+..+.++.+ |.++.. ..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 5799999999999999999999998889999999632 122233444444 666532 1234578
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH-HHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID-YAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~-~~l 328 (384)
+|+||.|..--.+|+--+ |-..+..+=...|.-|+.++ +|+|.+| |-+..-+.+.-.+ .+.
T Consensus 137 VdvVlSDMapnaTGvr~~-----------Dh~~~i~LC~s~l~~al~~~----~p~g~fv---cK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIR-----------DHYRSIELCDSALLFALTLL----IPNGSFV---CKLWDGSEEALLQRRLQ 198 (232)
T ss_pred ccEEEeccCCCCcCcchh-----------hHHHHHHHHHHHHHHhhhhc----CCCcEEE---EEEecCCchHHHHHHHH
Confidence 999999987788886322 22233344445667777775 9999998 6666555554444 444
Q ss_pred hcC-CCEEeecC
Q 016730 329 KKR-DVKLVPCG 339 (384)
Q Consensus 329 ~~~-~~~l~~~~ 339 (384)
+.+ .++.+.+.
T Consensus 199 ~~f~~Vk~vKP~ 210 (232)
T KOG4589|consen 199 AVFTNVKKVKPD 210 (232)
T ss_pred HHhhhcEeeCCc
Confidence 444 56666543
No 170
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.49 E-value=1.6e-06 Score=80.41 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEEecCCCCc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGNEL 241 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------------~~v~~~~~D~~~~ 241 (384)
.+|.+|||+|||.|.-+.+||+. .-.|+|+|+|+..++.+.. +.|+ .++.+.++|+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46789999999999999999874 3589999999999997633 2222 2577888999887
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+... .+.||.|+- --| +- ...++ ...+.+....++| ||||++++.|-+.
T Consensus 107 ~~~~-~~~fD~i~D-~~~-----~~-------~l~~~-------~R~~~~~~l~~lL----kpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAAD-LGPVDAVYD-RAA-----LI-------ALPEE-------MRQRYAAHLLALL----PPGARQLLITLDY 155 (213)
T ss_pred Cccc-CCCcCEEEe-chh-----hc-------cCCHH-------HHHHHHHHHHHHc----CCCCeEEEEEEEc
Confidence 5321 257998864 211 00 11111 1233566666665 9999988877655
No 171
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.49 E-value=8.5e-07 Score=78.89 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+|||+|||.|..-..|++--- .+.++++|-+++.++.++.-+++-|.+| |.+...|.... .++ .++||+|+=-.--
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-SGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-ccceeEEeecCce
Confidence 899999999987666665422 3569999999999999999999999988 99999998875 333 3778888621100
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHH
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv 324 (384)
-.|.-+|+-.-.+. .. -+...-++ |+|||++|..+|-++..|=.+.+
T Consensus 147 ---DAisLs~d~~~~r~--------~~---Y~d~v~~l----l~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 147 ---DAISLSPDGPVGRL--------VV---YLDSVEKL----LSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred ---eeeecCCCCcccce--------ee---ehhhHhhc----cCCCcEEEEEecCccHHHHHHHH
Confidence 00111222111100 00 12222333 59999999999999877655443
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.48 E-value=2.2e-07 Score=89.28 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=68.2
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..+++.+|++|||+|||+|..|..+++.. ..|+|+|+|+.+++.+++++.. .++.++++|+..++.. ...
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~--~~~ 105 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLS--ELQ 105 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHH--HcC
Confidence 4455677889999999999999999999874 3799999999999999987743 5789999999886421 111
Q ss_pred CCEEEEcCCCCCC
Q 016730 250 VDRVLLDAPCSGT 262 (384)
Q Consensus 250 fD~VllDaPCSg~ 262 (384)
+|.|+.++|..-+
T Consensus 106 ~~~vv~NlPY~is 118 (272)
T PRK00274 106 PLKVVANLPYNIT 118 (272)
T ss_pred cceEEEeCCccch
Confidence 5999999997443
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.48 E-value=1.4e-06 Score=90.74 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=92.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
..+..+||+|||.|..++++|...++ ..++|+|++...+..+...+.+.|++|+.+++.|+..+...+...++|.|.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 35778999999999999999998875 68999999999999999999999999999988887655555556789999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
=| +|.-|-......+ .|..+|....+.| ||||.+-+.|
T Consensus 425 FP---------DPWpKkrh~krRl-----~~~~fl~~~~~~L----k~gG~i~~~T 462 (506)
T PRK01544 425 FP---------DPWIKNKQKKKRI-----FNKERLKILQDKL----KDNGNLVFAS 462 (506)
T ss_pred CC---------CCCCCCCCccccc-----cCHHHHHHHHHhc----CCCCEEEEEc
Confidence 77 4544333222222 4556677777775 9999998887
No 174
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.46 E-value=5.4e-06 Score=89.71 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCcccccceEEEeCCcCc---chhhhc---CC-CCCceEEEeccCCChHHHHHHHHcc--------------------
Q 016730 149 IGATPEYMAGFYMLQSASSF---LPVMAL---AP-QEKERVIDMAAAPGGKTTYIAALMK-------------------- 201 (384)
Q Consensus 149 ~~~~~~~~~G~~~~Qd~ss~---l~~~~L---~~-~~g~~VLD~cagpGgkt~~la~~~~-------------------- 201 (384)
....+.++.|+=..+.++.. +++.+| .. ++++.++|.+||+|...+..|.+..
T Consensus 154 ~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~ 233 (702)
T PRK11783 154 LSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHD 233 (702)
T ss_pred CCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCC
Confidence 44557788886555555542 333333 22 5688999999999998776554311
Q ss_pred ---------------------CCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 202 ---------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 202 ---------------------~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
....|+|+|+++..++.++.|++..|+.+ +.+.++|+.+++.....+.||.|++|||.
T Consensus 234 ~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 234 EALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 11369999999999999999999999975 78889999887543323579999999996
No 175
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=1.5e-06 Score=80.08 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=94.3
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc-c
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-P 242 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~-~ 242 (384)
.-.++...++..-...++||+|.-+|.-++..|..++.+|+|+++|+++.-.+...+..++.|+.. +.++.+++.+- .
T Consensus 60 d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 60 DKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 334566666665567799999999999999999999999999999999999999999999999864 78888887653 1
Q ss_pred ---cccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 243 ---KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 243 ---~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
...+.+.||.+++|+= . . .....+.++++++ |+||.|++-.-
T Consensus 140 ~l~~~~~~~tfDfaFvDad-----------------K-~-------nY~~y~e~~l~Ll----r~GGvi~~DNv 184 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDAD-----------------K-D-------NYSNYYERLLRLL----RVGGVIVVDNV 184 (237)
T ss_pred HHHhcCCCCceeEEEEccc-----------------h-H-------HHHHHHHHHHhhc----ccccEEEEecc
Confidence 1123478999999973 1 1 1125678888986 99999998653
No 176
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.44 E-value=2.4e-06 Score=78.63 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||+|..+..+++..++ +.++|+|+|+.+++.+++++ .++.+..+|+.. + +..++||.|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~--~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P--FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C--CCCCCEEEEEE
Confidence 456789999999999999999887643 68999999999999998764 245566778776 2 33478999997
Q ss_pred c
Q 016730 256 D 256 (384)
Q Consensus 256 D 256 (384)
.
T Consensus 112 ~ 112 (204)
T TIGR03587 112 K 112 (204)
T ss_pred C
Confidence 3
No 177
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.41 E-value=3.9e-06 Score=77.82 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. .++.+..+|.... .+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-----LGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-----cCCcCEEEE
Confidence 46789999999999999888765 25699999999999999999988887 4678888884321 267999987
Q ss_pred c
Q 016730 256 D 256 (384)
Q Consensus 256 D 256 (384)
.
T Consensus 134 ~ 134 (230)
T PRK07580 134 L 134 (230)
T ss_pred c
Confidence 3
No 178
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=4.5e-07 Score=77.76 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
-+|..++|+|||.|..+ ++..|.+...|+++|+++..++...+|++.+.++ +.+++.|..++.. ..+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~--~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL--KGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc--cCCeEeeEEec
Confidence 36899999999999966 4455555578999999999999999999999885 4777888877643 23889999999
Q ss_pred CCCCCCCcCCCCc
Q 016730 257 APCSGTGVISKDE 269 (384)
Q Consensus 257 aPCSg~G~~~r~p 269 (384)
|| .|+-.++.
T Consensus 122 pp---FGTk~~~a 131 (185)
T KOG3420|consen 122 PP---FGTKKKGA 131 (185)
T ss_pred CC---CCcccccc
Confidence 99 46544443
No 179
>PRK06202 hypothetical protein; Provisional
Probab=98.38 E-value=2.2e-06 Score=80.08 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
...++.+|||+|||+|..+..|+...+. ...|+|+|+++.+++.++++....++ .+...|+..++. ..++||
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~l~~--~~~~fD 131 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV---TFRQAVSDELVA--EGERFD 131 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC---eEEEEecccccc--cCCCcc
Confidence 3356789999999999999888876532 24899999999999999887655444 344444444432 236899
Q ss_pred EEEEc
Q 016730 252 RVLLD 256 (384)
Q Consensus 252 ~VllD 256 (384)
.|++.
T Consensus 132 ~V~~~ 136 (232)
T PRK06202 132 VVTSN 136 (232)
T ss_pred EEEEC
Confidence 99984
No 180
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.36 E-value=5.4e-06 Score=77.08 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEEecCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGN 239 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------------~~v~~~~~D~~ 239 (384)
.+.++.+|||++||.|.-+.+||+. +-.|+|+|+|+..++.+.. +.|+ .++.+.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456789999999999999999874 3589999999999998642 2222 35777889988
Q ss_pred CcccccCCCCCCEEEE
Q 016730 240 ELPKVLGLNTVDRVLL 255 (384)
Q Consensus 240 ~~~~~~~~~~fD~Vll 255 (384)
.+.... ...||.|+-
T Consensus 108 ~l~~~~-~~~fd~v~D 122 (218)
T PRK13255 108 ALTAAD-LADVDAVYD 122 (218)
T ss_pred CCCccc-CCCeeEEEe
Confidence 774321 257888873
No 181
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.35 E-value=1.4e-06 Score=84.50 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=76.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---CC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~~ 247 (384)
..+|.+++|..++|+.+|-||.|..|++.+++ |+|+|+|.|+..+..++++++.++ .++.+++++..++.... ..
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45677889999999999999999999998875 999999999999999999988764 46888888888765433 22
Q ss_pred CCCCEEEEcCCCCCC
Q 016730 248 NTVDRVLLDAPCSGT 262 (384)
Q Consensus 248 ~~fD~VllDaPCSg~ 262 (384)
.+||.|++|--+|+.
T Consensus 91 ~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 91 TKIDGILVDLGVSSP 105 (305)
T ss_pred CcccEEEEeccCCHh
Confidence 579999999988876
No 182
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=1.8e-06 Score=80.00 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=77.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC-----c-----------------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----T----------------------- 229 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~-----~----------------------- 229 (384)
.+..+||+||-.|..|.+||...+. ..|+++|||+.+++.++++++..-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3567999999999999999999875 5799999999999999999864310 0
Q ss_pred -------e-------EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 016730 230 -------N-------TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (384)
Q Consensus 230 -------~-------v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~ 295 (384)
| .+....|.. ++....||+||| +.--..+.+.|..+.+ ++++.+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlc---------LSiTkWIHLNwgD~GL-------~~ff~kis 196 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILC---------LSITKWIHLNWGDDGL-------RRFFRKIS 196 (288)
T ss_pred ccccCCcchhcccccEEEecchhh----hhccccccEEEE---------EEeeeeEecccccHHH-------HHHHHHHH
Confidence 0 111111111 123468999997 2222345556777766 66788899
Q ss_pred HchhccCCCCcEEEEEe
Q 016730 296 DMVDANSKSGGYIVYST 312 (384)
Q Consensus 296 ~~L~~~lkpGG~lvYsT 312 (384)
++| .|||+||.--
T Consensus 197 ~ll----~pgGiLvvEP 209 (288)
T KOG2899|consen 197 SLL----HPGGILVVEP 209 (288)
T ss_pred Hhh----CcCcEEEEcC
Confidence 986 9999999743
No 183
>PRK05785 hypothetical protein; Provisional
Probab=98.34 E-value=2.1e-06 Score=80.19 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
++.+|||+|||+|..+.++++.. .+.|+|+|+|+++++.+++.. ..+++|+..++ +.+++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp--~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALP--FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCC--CCCCCEEEEEe
Confidence 47899999999999999888875 368999999999999987531 23568888776 34588999997
No 184
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.32 E-value=7.8e-06 Score=78.71 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=76.6
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-cCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~-~D~~~~~~~~~~~~fD~ 252 (384)
+.+-.|.+|||+||+.|..+..|+.. +...|+|+|.+..-+....---+-+|.+...... .-...++. . +.||.
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FDt 185 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFDT 185 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcCE
Confidence 33457999999999999998877765 3458999999987666544444455554433322 23334454 2 78999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
|++ .||+-+ ++++- ..|...-+.| ++||.||.=|=-+.-+|+
T Consensus 186 VF~------MGVLYH------rr~Pl----------~~L~~Lk~~L----~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 186 VFS------MGVLYH------RRSPL----------DHLKQLKDSL----RPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEE------eeehhc------cCCHH----------HHHHHHHHhh----CCCCEEEEEEeeecCCCc
Confidence 997 787643 23332 2344444554 999999998876655554
No 185
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.32 E-value=1.9e-06 Score=74.78 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=67.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..++.+|||+|||.|..+..++.. ..+++++|+++..++. .++.....+...... ..++||.|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF--PDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHC--HSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc--cccchhhHhh
Confidence 467889999999999988888654 2489999999999887 222333333332221 2378999998
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
. .++..-|+ -..+|....++| ||||+++.++-..
T Consensus 85 ~------~~l~~~~d----------------~~~~l~~l~~~L----kpgG~l~~~~~~~ 118 (161)
T PF13489_consen 85 N------DVLEHLPD----------------PEEFLKELSRLL----KPGGYLVISDPNR 118 (161)
T ss_dssp E------SSGGGSSH----------------HHHHHHHHHHCE----EEEEEEEEEEEBT
T ss_pred H------HHHhhccc----------------HHHHHHHHHHhc----CCCCEEEEEEcCC
Confidence 3 22222111 235778888886 9999999988554
No 186
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.31 E-value=5.3e-06 Score=74.94 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=54.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
++||.+|||+|||.|..-.+|.+. .....+++|++++.+....++ |+ .++.+|...--..+++.+||.|++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----Gv---~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----GV---SVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----CC---CEEECCHHHhHhhCCCCCccEEeh
Confidence 468999999999999877666664 246899999999987665442 44 467888876555566789999997
No 187
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.31 E-value=4.2e-06 Score=78.01 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=75.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc-ccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~-~~~~~~~~fD~VllD 256 (384)
.|.+|| |-|-+-.+...+.+......|+.+|+|+.-++-+++.+++.|++ +.....|.++. |..+ .++||+++.|
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFTD 119 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE-
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEeC
Confidence 578897 55566655555555555578999999999999999999999998 99999999975 4333 3799999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc--ccHHHHHHHHhcCCCE
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT--ENEAVIDYALKKRDVK 334 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~--ENe~vv~~~l~~~~~~ 334 (384)
||.+-.|+ .-+|.+++..| |.-|..+|-..|..+. +--..|+.++-+.++-
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~L----k~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEAL----KGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-----STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHh----CCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 99655543 33678889886 6556556666665431 1113466666677876
Q ss_pred Eeec
Q 016730 335 LVPC 338 (384)
Q Consensus 335 l~~~ 338 (384)
+.++
T Consensus 173 i~di 176 (243)
T PF01861_consen 173 ITDI 176 (243)
T ss_dssp EEEE
T ss_pred HHHH
Confidence 6654
No 188
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.30 E-value=1.9e-06 Score=79.62 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=95.8
Q ss_pred Ccchhhhc------CCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 016730 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~L------~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~ 240 (384)
|-|++..+ -++||.+||-++||+|..-.|++..+++.|.|+|+|.+...=..|...+++ -+|+..+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCC
Confidence 44555554 368999999999999999999999999999999999987655555544433 2678888899998
Q ss_pred cccc-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHH-HHHHHchhccCCCCcEEEEE---eccC
Q 016730 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI-LAAIDMVDANSKSGGYIVYS---TCSI 315 (384)
Q Consensus 241 ~~~~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL-~~a~~~L~~~lkpGG~lvYs---TCSi 315 (384)
+.++ +--.-+|+|+.|.| .| .|.+|+ .+|..+| |+||.+|.| .|+=
T Consensus 217 P~KYRmlVgmVDvIFaDva---------qp----------------dq~RivaLNA~~FL----k~gGhfvisikancid 267 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA---------QP----------------DQARIVALNAQYFL----KNGGHFVISIKANCID 267 (317)
T ss_pred chheeeeeeeEEEEeccCC---------Cc----------------hhhhhhhhhhhhhh----ccCCeEEEEEeccccc
Confidence 6542 11247999999987 12 233444 4556664 999998865 7888
Q ss_pred CccccHHHHH
Q 016730 316 MVTENEAVID 325 (384)
Q Consensus 316 ~~~ENe~vv~ 325 (384)
....+|.|-+
T Consensus 268 stv~ae~vFa 277 (317)
T KOG1596|consen 268 STVFAEAVFA 277 (317)
T ss_pred ccccHHHHHH
Confidence 8899999876
No 189
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.27 E-value=1.4e-06 Score=77.90 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=80.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+.+-|+|||+|-.+...|... -+|+|++.++.+...+.+|++-.|..|+.++++|++.+.. +..|+|+|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f----e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF----ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc----cccceeHHHH-
Confidence 3689999999999888777663 4799999999999999999999999999999999998753 6789998732
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv 309 (384)
-|-.-+-.-|-..+++++++| |..++++
T Consensus 105 -------------------lDTaLi~E~qVpV~n~vleFL----r~d~tii 132 (252)
T COG4076 105 -------------------LDTALIEEKQVPVINAVLEFL----RYDPTII 132 (252)
T ss_pred -------------------hhHHhhcccccHHHHHHHHHh----hcCCccc
Confidence 122234456777888888886 8888775
No 190
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.25 E-value=4.1e-06 Score=87.71 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-------CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-c--cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-------TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-V--LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-------~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~--~~~ 247 (384)
.+.+|||.|||+|+..+.++..+.. ...++++|+++..+..++.|+..++.-.+.+.+.|...... . ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999999988876632 14689999999999999999988872233444444332110 0 012
Q ss_pred CCCCEEEEcCCCCCCC
Q 016730 248 NTVDRVLLDAPCSGTG 263 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G 263 (384)
+.||+|+.+||.....
T Consensus 111 ~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 111 DLFDIVITNPPYGRLK 126 (524)
T ss_pred CcccEEEeCCCccccC
Confidence 5799999999986654
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.23 E-value=4.1e-06 Score=79.52 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=66.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
.+..+++.++++|||+|||+|..|..|++... .|+++|+|+..++.+++++.. ..++.++++|+..++. ..
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~----~~ 91 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL----PD 91 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh----hH
Confidence 44556677899999999999999999998753 599999999999999987743 4578899999987653 24
Q ss_pred CC---EEEEcCCC
Q 016730 250 VD---RVLLDAPC 259 (384)
Q Consensus 250 fD---~VllDaPC 259 (384)
|| .|+.+.|.
T Consensus 92 ~d~~~~vvsNlPy 104 (253)
T TIGR00755 92 FPKQLKVVSNLPY 104 (253)
T ss_pred cCCcceEEEcCCh
Confidence 66 99999883
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.2e-06 Score=74.59 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=69.9
Q ss_pred hhhcC--CCCCceEEEeccCCChHHHHHHHHccCCceE-EEEeCCHHHHHHHHHHHHHcC----------CceEEEEecC
Q 016730 171 VMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMG----------VTNTIVCNYD 237 (384)
Q Consensus 171 ~~~L~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V-~a~D~~~~rl~~l~~n~~r~g----------~~~v~~~~~D 237 (384)
..+|+ .+||...||+|+|+|..|+.++.++...|.+ +++|..++-++..++|+...- -....++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 44566 7899999999999999999999888766654 999999999999999997653 1246777899
Q ss_pred CCCcccccCCCCCCEEEEcCC
Q 016730 238 GNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaP 258 (384)
++..-... .+||+|.|-|.
T Consensus 153 gr~g~~e~--a~YDaIhvGAa 171 (237)
T KOG1661|consen 153 GRKGYAEQ--APYDAIHVGAA 171 (237)
T ss_pred ccccCCcc--CCcceEEEccC
Confidence 99875433 79999999654
No 193
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=5e-05 Score=67.72 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=90.2
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
.+.++++|||+|-.++.+++...+....+|.|+++..++...+.++.+++. +.++..|...-. ..+++|+++.+||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l---~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGL---RNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhh---ccCCccEEEECCC
Confidence 568999999999999999998887788999999999999999999988875 555566665432 2379999999999
Q ss_pred CCCCC--cC-CCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCC
Q 016730 259 CSGTG--VI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 259 CSg~G--~~-~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~ 333 (384)
+--+- =+ ...-+..|.-. +.-++..+.....+.-.|.|.|.+...+|.-+. -+++++ +++..++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG--------~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--p~ei~k-~l~~~g~ 186 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG--------KDGREVTDRLLPQVPDILSPRGVFYLVALRANK--PKEILK-ILEKKGY 186 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC--------cchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--HHHHHH-HHhhccc
Confidence 62221 00 00001112211 112223333333333335899988777664321 134444 6666543
No 194
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.09 E-value=7.3e-06 Score=82.19 Aligned_cols=105 Identities=27% Similarity=0.318 Sum_probs=75.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~--v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.+-+|||+-||+|--++-.+.-..+...|+++|+|++.++.+++|++.+|+.. +.+.+.|+..+-. .....||.|=+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 34589999999999999888776555799999999999999999999999986 7888889876542 23478999999
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
||= | ++ -..|+.|++.+ |.||.| +.|||
T Consensus 128 DPf----G------------Sp----------~pfldsA~~~v----~~gGll-~vTaT 155 (377)
T PF02005_consen 128 DPF----G------------SP----------APFLDSALQAV----KDGGLL-CVTAT 155 (377)
T ss_dssp --S----S------------------------HHHHHHHHHHE----EEEEEE-EEEE-
T ss_pred CCC----C------------Cc----------cHhHHHHHHHh----hcCCEE-EEecc
Confidence 972 2 11 23789999987 777655 66665
No 195
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.09 E-value=4.2e-06 Score=81.07 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=92.4
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHH-------HHHHHHHHcCCce--EEEEecC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLK-------SLTANLHRMGVTN--TIVCNYD 237 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~-------~l~~n~~r~g~~~--v~~~~~D 237 (384)
|.+.+....++||+.|.|-..|+|+.-...|.. ++.|++.|||-..+. .++.|++.+|... ..++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 344555556889999999999999965443333 368999999987766 5789999999654 5666789
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCC---cCCCCchhhcc--------CCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 238 GNELPKVLGLNTVDRVLLDAPCSGTG---VISKDESVKTS--------KSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 238 ~~~~~~~~~~~~fD~VllDaPCSg~G---~~~r~p~~~~~--------~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
..+.+ +.....||.|+||||+.--- .+.++..++.. ........+..+--.+|.-+.+.| .-||
T Consensus 274 ~sn~~-~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L----~~gg 348 (421)
T KOG2671|consen 274 FSNPP-LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL----VDGG 348 (421)
T ss_pred ccCcc-hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh----hcCc
Confidence 88765 34457899999999972111 11111111110 011223345556667788888876 9999
Q ss_pred EEEEEec
Q 016730 307 YIVYSTC 313 (384)
Q Consensus 307 ~lvYsTC 313 (384)
++|+---
T Consensus 349 rlv~w~p 355 (421)
T KOG2671|consen 349 RLVFWLP 355 (421)
T ss_pred eEEEecC
Confidence 9997544
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.9e-05 Score=74.94 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=72.9
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 248 (384)
-.+...++++++.||++|.|.|+.|..|++.. ..|+|+|+|+..+..+++.+. ...|+.++++|+....... -.
T Consensus 21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~-l~ 94 (259)
T COG0030 21 KIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS-LA 94 (259)
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh-hc
Confidence 35677788889999999999999999999874 479999999999999998876 3468999999998875321 01
Q ss_pred CCCEEEEcCCCCCCC
Q 016730 249 TVDRVLLDAPCSGTG 263 (384)
Q Consensus 249 ~fD~VllDaPCSg~G 263 (384)
.+++|+.+-|+.-+.
T Consensus 95 ~~~~vVaNlPY~Iss 109 (259)
T COG0030 95 QPYKVVANLPYNISS 109 (259)
T ss_pred CCCEEEEcCCCcccH
Confidence 689999999986553
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.04 E-value=2.7e-05 Score=70.52 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=74.2
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|+|+|+|.|-=++-+|-..++ ..++.+|.+.+|+.-++.-...+|++|+.+++..+.+ . .....||.|+.=|=+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~--~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P--EYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T--TTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c--ccCCCccEEEeehhc-
Confidence 7999999999998888877754 7899999999999999999999999999999988876 1 123789999874321
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+. ..++.-+..++ ++||+++.--
T Consensus 126 ---------------~l----------~~l~~~~~~~l----~~~G~~l~~K 148 (184)
T PF02527_consen 126 ---------------PL----------DKLLELARPLL----KPGGRLLAYK 148 (184)
T ss_dssp ---------------SH----------HHHHHHHGGGE----EEEEEEEEEE
T ss_pred ---------------CH----------HHHHHHHHHhc----CCCCEEEEEc
Confidence 11 23555666665 9999887643
No 198
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.03 E-value=2.5e-06 Score=77.99 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCccccc--CCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~--~~~~fD~Vl 254 (384)
.-+.|+|..||-||-|+..+... ..|+++|+|+-++..+++|++-+|+.+ |.++++|..++...+ ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 34689999999999998877653 479999999999999999999999975 899999988764322 123477999
Q ss_pred EcCCCCCCCcCCC
Q 016730 255 LDAPCSGTGVISK 267 (384)
Q Consensus 255 lDaPCSg~G~~~r 267 (384)
+-||-+|.|..+.
T Consensus 171 ~sppwggp~y~~~ 183 (263)
T KOG2730|consen 171 LSPPWGGPSYLRA 183 (263)
T ss_pred cCCCCCCcchhhh
Confidence 9999999997654
No 199
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=73.50 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..+-.++||+|||+|-.+-.|-.+. ..++++|+|..+++.+.+. |+-. ...+.|+..+......++||.|..
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhhccCCcccchhh
Confidence 3446899999999999887776665 3699999999999988653 2211 112344433333234578999853
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc------------cHHH
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NEAV 323 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E------------Ne~v 323 (384)
.|+.-..-.-..++-.+...| +|||.+.+|.=+.-.+- .+.-
T Consensus 195 ----------------------aDVl~YlG~Le~~~~~aa~~L----~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~Y 248 (287)
T COG4976 195 ----------------------ADVLPYLGALEGLFAGAAGLL----APGGLFAFSVETLPDDGGFVLGPSQRYAHSESY 248 (287)
T ss_pred ----------------------hhHHHhhcchhhHHHHHHHhc----CCCceEEEEecccCCCCCeecchhhhhccchHH
Confidence 222222222234566666764 99999999987764442 2444
Q ss_pred HHHHHhcCCCEEeec
Q 016730 324 IDYALKKRDVKLVPC 338 (384)
Q Consensus 324 v~~~l~~~~~~l~~~ 338 (384)
|...++..+++++.+
T Consensus 249 Vr~~l~~~Gl~~i~~ 263 (287)
T COG4976 249 VRALLAASGLEVIAI 263 (287)
T ss_pred HHHHHHhcCceEEEe
Confidence 555556666666654
No 200
>PLN02823 spermine synthase
Probab=98.02 E-value=5e-05 Score=75.09 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=61.2
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCcccccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..+||-+|+|.|+.+..+++.. ...+|+++|+|+..++.+++.+...+ -.++.++.+|++.+-... .++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 4689999999999887776643 23589999999999999999876432 246889999999864322 36899999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
+|++
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 9974
No 201
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.94 E-value=6.4e-05 Score=68.26 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-cccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~-~~~~~~~~~fD~Vll 255 (384)
+++.+|||+|||+|..+..+++.. ...++++|+++..++.++. . ++.++.+|+.. ++. +..++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~-~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA-FPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc-cCCCCcCEEEE
Confidence 467899999999999988877653 2468999999998887753 1 34566677654 222 23468999998
Q ss_pred cCC
Q 016730 256 DAP 258 (384)
Q Consensus 256 DaP 258 (384)
..+
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 543
No 202
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.93 E-value=2.8e-05 Score=80.69 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=107.7
Q ss_pred ceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHHHcCCc-eEEE
Q 016730 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVT-NTIV 233 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~ 233 (384)
|.|+-=..-+.+.+.++.|++..+|.|-|||+||.-+..+..++. ...+++.|+++.....++-|+--.|+. ++.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 555444455678889999999999999999999988887777753 367999999999999999999988887 4556
Q ss_pred EecCCCCccccc---CCCCCCEEEEcCCCCCCCcCCCCchhhccC--CHHHHHHHHHHH-HHHHHHHHHchhccCCCCcE
Q 016730 234 CNYDGNELPKVL---GLNTVDRVLLDAPCSGTGVISKDESVKTSK--SLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 234 ~~~D~~~~~~~~---~~~~fD~VllDaPCSg~G~~~r~p~~~~~~--~~~~i~~l~~~Q-~~iL~~a~~~L~~~lkpGG~ 307 (384)
.++|...-+... ....||.|+.+||.|+.|...-.-+..+.+ ............ ...+.+.+..+ +|||+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l----~~~g~ 321 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL----KPGGR 321 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc----CCCce
Confidence 566655444331 336799999999998776543210000000 000000000001 34566777775 88764
Q ss_pred E--EEEeccCCccccHHHHH-HHHh
Q 016730 308 I--VYSTCSIMVTENEAVID-YALK 329 (384)
Q Consensus 308 l--vYsTCSi~~~ENe~vv~-~~l~ 329 (384)
. |...=.++..-+|..|. .+++
T Consensus 322 aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 322 AAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEEEecCCcCcCCCchHHHHHHHHh
Confidence 3 23333334444688887 5555
No 203
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.93 E-value=3.5e-05 Score=69.01 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--C-ceEEEEecCCCC-c-ccccCCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYDGNE-L-PKVLGLNTVD 251 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~-~~v~~~~~D~~~-~-~~~~~~~~fD 251 (384)
.+|.+||++|||.|--++.++.+. +...|++.|.++ -+..++.|+++++ . .++.+...|=.+ . ........||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999998888777774 346899999999 9999999999887 2 345555544322 1 1222336899
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHH
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~ 325 (384)
.||. .|+-+. .+. -..++.....+ |+++|. +|..+.....+....++
T Consensus 122 ~Ila-------------sDv~Y~--~~~-------~~~L~~tl~~l----l~~~~~-vl~~~~~R~~~~~~F~~ 168 (173)
T PF10294_consen 122 VILA-------------SDVLYD--EEL-------FEPLVRTLKRL----LKPNGK-VLLAYKRRRKSEQEFFD 168 (173)
T ss_dssp EEEE-------------ES--S---GGG-------HHHHHHHHHHH----BTT-TT-EEEEEE-S-TGGCHHHH
T ss_pred EEEE-------------ecccch--HHH-------HHHHHHHHHHH----hCCCCE-EEEEeCEecHHHHHHHH
Confidence 9986 222222 121 22344444444 588888 56666665544444433
No 204
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.93 E-value=9.4e-05 Score=67.96 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=86.9
Q ss_pred eEEEeCCcCcchhhhcCCCC--CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 016730 159 FYMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (384)
Q Consensus 159 ~~~~Qd~ss~l~~~~L~~~~--g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~ 236 (384)
-..||-+-+.-+..+|+.++ ..-|||+|||+|--+..+.+ ..-..+++|+|+.+|+.+.+ .++. -.++.+
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVE--RELE---GDLILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHH--hhhh---cCeeee
Confidence 35678776666777777655 56799999999987765544 23478999999999999986 3322 123345
Q ss_pred CCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHH---HHHHHHHHHchhccCCCCcEEEEEec
Q 016730 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ---KQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q---~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
|.-.-. .+..+.||.||.= |+ +.|.-+.. .....-+ ..++...+.. |++|++.|+-
T Consensus 101 DMG~Gl-pfrpGtFDg~ISI---SA---------vQWLcnA~--~s~~~P~~Rl~~FF~tLy~~----l~rg~raV~Q-- 159 (270)
T KOG1541|consen 101 DMGEGL-PFRPGTFDGVISI---SA---------VQWLCNAD--KSLHVPKKRLLRFFGTLYSC----LKRGARAVLQ-- 159 (270)
T ss_pred ecCCCC-CCCCCccceEEEe---ee---------eeeecccC--ccccChHHHHHHHhhhhhhh----hccCceeEEE--
Confidence 544321 1445899988751 11 11211110 0001111 2234444555 4999999863
Q ss_pred cCCccccHHHHHHHHhc
Q 016730 314 SIMVTENEAVIDYALKK 330 (384)
Q Consensus 314 Si~~~ENe~vv~~~l~~ 330 (384)
+..||+++++-+++.
T Consensus 160 --fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 160 --FYPENEAQIDMIMQQ 174 (270)
T ss_pred --ecccchHHHHHHHHH
Confidence 568999999987764
No 205
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.92 E-value=8.1e-05 Score=69.50 Aligned_cols=113 Identities=8% Similarity=-0.002 Sum_probs=74.4
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH------------HHcCCceEEEEecCCCCccc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL------------HRMGVTNTIVCNYDGNELPK 243 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~------------~r~g~~~v~~~~~D~~~~~~ 243 (384)
+.+|.+||+.+||.|.-..+||+. +-.|+|+|+|+..++.+.+.. .+..-.++.+.++|...++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345789999999999999999885 347999999999999875521 11222368899999998753
Q ss_pred c-cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 244 V-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 244 ~-~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
. ...+.||.|.- - ...-.+ +|+. -.+..++..++ |+|||+++..|-..
T Consensus 118 ~~~~~~~fD~VyD-r--a~~~Al--pp~~---------------R~~Y~~~l~~l----L~pgg~llll~~~~ 166 (226)
T PRK13256 118 IANNLPVFDIWYD-R--GAYIAL--PNDL---------------RTNYAKMMLEV----CSNNTQILLLVMEH 166 (226)
T ss_pred cccccCCcCeeee-e--hhHhcC--CHHH---------------HHHHHHHHHHH----hCCCcEEEEEEEec
Confidence 1 11257999753 1 111111 1211 22344555555 49999999887544
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.92 E-value=4.7e-05 Score=72.13 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=85.5
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----ceEEEEecCCCCcccccCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPKVLGL 247 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~----~~v~~~~~D~~~~~~~~~~ 247 (384)
.++.+ ...+||=+|.|.|+.+..+...- .-..|+++|+|+.-++.+++-+..... .++.++..|+..+-.....
T Consensus 71 ~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~ 148 (246)
T PF01564_consen 71 LLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE 148 (246)
T ss_dssp HHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS
T ss_pred hhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC
Confidence 33334 46799999999999887766543 235899999999999999988766433 3688899999887544332
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~ 327 (384)
.+||+|++|++= ..| |... ..+ ++.++.+.+.| +|||.++.-..|. ..++..+..+
T Consensus 149 ~~yDvIi~D~~d-p~~-----~~~~-l~t-----------~ef~~~~~~~L----~~~Gv~v~~~~~~--~~~~~~~~~i 204 (246)
T PF01564_consen 149 EKYDVIIVDLTD-PDG-----PAPN-LFT-----------REFYQLCKRRL----KPDGVLVLQAGSP--FLHPELFKSI 204 (246)
T ss_dssp T-EEEEEEESSS-TTS-----CGGG-GSS-----------HHHHHHHHHHE----EEEEEEEEEEEET--TTTHHHHHHH
T ss_pred CcccEEEEeCCC-CCC-----Cccc-ccC-----------HHHHHHHHhhc----CCCcEEEEEccCc--ccchHHHHHH
Confidence 289999999872 111 1111 222 34566666765 9999999765333 2344555444
Q ss_pred Hh
Q 016730 328 LK 329 (384)
Q Consensus 328 l~ 329 (384)
.+
T Consensus 205 ~~ 206 (246)
T PF01564_consen 205 LK 206 (246)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 207
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.92 E-value=0.00014 Score=69.54 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=90.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceE-EEEecCCCCcccccC-CCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVLG-LNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v-~~~~~D~~~~~~~~~-~~~fD~Vl 254 (384)
..-+|||+|||+|.--+-+.+..+. .-.|.-.|.++.-++..++.++..|+.++ .+.++|+.+...... ....+.++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3458999999999876665555543 34799999999999999999999999987 999999987533221 13568887
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
+ +|++---|| .+.+ ++.|...... +.|||+|||+.=-.||+ -+.|++.|..|
T Consensus 215 V------sGL~ElF~D------n~lv-------~~sl~gl~~a----l~pgG~lIyTgQPwHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 215 V------SGLYELFPD------NDLV-------RRSLAGLARA----LEPGGYLIYTGQPWHPQ--LEMIARVLTSH 266 (311)
T ss_pred E------ecchhhCCc------HHHH-------HHHHHHHHHH----hCCCcEEEEcCCCCCcc--hHHHHHHHhcc
Confidence 6 454322222 1111 2234444454 49999999988777775 35678888654
No 208
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=5.8e-05 Score=68.68 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=85.2
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE-EEecCCCCcccccCCCCCCEEEEcC-
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVLGLNTVDRVLLDA- 257 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~-~~~~D~~~~~~~~~~~~fD~VllDa- 257 (384)
..||++|||||.---..- +.+..+|+++|.++++-+.+...++.....++. ++.+++.+++.. .+.++|.|++--
T Consensus 78 ~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-ADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-ccCCeeeEEEEEE
Confidence 358999999997433221 124468999999999999999988887666776 889999998854 458999998631
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
=||-. .+.+.|++.-++| ||||++++.. |..+--.-.++++++
T Consensus 155 LCSve-----------------------~~~k~L~e~~rlL----RpgG~iifiE---Hva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 155 LCSVE-----------------------DPVKQLNEVRRLL----RPGGRIIFIE---HVAGEYGFWNRILQQ 197 (252)
T ss_pred EeccC-----------------------CHHHHHHHHHHhc----CCCcEEEEEe---cccccchHHHHHHHH
Confidence 23322 2456788888875 9999999864 444444555566653
No 209
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.88 E-value=0.00011 Score=64.73 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=86.1
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLN 248 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~ 248 (384)
...++..|--||++|.|+|-.|-.|++.+-....++++|.|++-...+.+.. ..+.++++|+..+.. ...+.
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCC
Confidence 3356888999999999999999999998777779999999999988877653 345688999887642 23457
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.||.|++-.|--.. .. ..-.+||+.+...| ++||.+|--|-+
T Consensus 117 ~~D~viS~lPll~~-------------P~-------~~~iaile~~~~rl----~~gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNF-------------PM-------HRRIAILESLLYRL----PAGGPLVQFTYG 158 (194)
T ss_pred eeeeEEeccccccC-------------cH-------HHHHHHHHHHHHhc----CCCCeEEEEEec
Confidence 89999997772111 11 11245788888875 999999977766
No 210
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.87 E-value=8.5e-05 Score=72.59 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=81.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+..|||+|||+|-.++..|+. +..+|+|+|.|.-. +.+.+.+..+|+.+ ++++.+...++. ++.+++|.|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--LP~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--LPVEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--cCccceeEEeeh
Confidence 5889999999999988876665 24689999977655 89999999999987 677777776652 223789999862
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
|- ...-+...+|+..+-.=.+.|+|||.+.=++|+++-
T Consensus 135 ----------------WM-------Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 135 ----------------WM-------GYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ----------------hh-------hHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 21 122233445555544434457999999988888764
No 211
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.86 E-value=6.8e-06 Score=79.82 Aligned_cols=91 Identities=23% Similarity=0.313 Sum_probs=65.0
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc----
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---- 245 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---- 245 (384)
+...|.++++..++|+.-|-||.|..|++..++ ++|+|+|.|+..++.++++++.. -.++.+++.+..++...+
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHcc
Confidence 456677899999999999999999999999887 99999999999999998887755 346888888887764332
Q ss_pred CCCCCCEEEEcCCCCCC
Q 016730 246 GLNTVDRVLLDAPCSGT 262 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~ 262 (384)
...++|.||+|--+|..
T Consensus 90 ~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 90 GINKVDGILFDLGVSSM 106 (310)
T ss_dssp TTS-EEEEEEE-S--HH
T ss_pred CCCccCEEEEccccCHH
Confidence 22589999999988865
No 212
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.86 E-value=6.6e-05 Score=74.09 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-------C---ceEEEEecCCCCc--cccc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------V---TNTIVCNYDGNEL--PKVL 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-------~---~~v~~~~~D~~~~--~~~~ 245 (384)
++.+|||+|||-||-..-.... +-+.++++|++...++.++++.+.++ . -...++..|...- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999965533332 34689999999999999999884332 1 1345667777643 1112
Q ss_pred CC--CCCCEEEEcCCCCCCCcCCCCchhhccC-CHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSK-SLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ~~--~~fD~VllDaPCSg~G~~~r~p~~~~~~-~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
.. ..||+|=|=-. +.+.. +.+. -+.+|.++...| +|||+++-+|.+
T Consensus 140 ~~~~~~FDvVScQFa------------lHY~Fese~~-------ar~~l~Nvs~~L----k~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------------LHYAFESEEK-------ARQFLKNVSSLL----KPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHH-------HHHHHHHHHHTE----EEEEEEEEEEE-
T ss_pred cccCCCcceeehHHH------------HHHhcCCHHH-------HHHHHHHHHHhc----CCCCEEEEEecC
Confidence 22 48999976221 22222 3332 256889999986 999999987753
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.85 E-value=3.5e-05 Score=72.11 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=36.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHH-HHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTAN 222 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~-l~~n 222 (384)
.+|.+|||+|||||+.|..+++. +...|+|+|+++.++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36889999999999999999886 34689999999987764 4443
No 214
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.80 E-value=0.0002 Score=67.22 Aligned_cols=114 Identities=17% Similarity=0.097 Sum_probs=83.0
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
...+..+..+|||+|.|.|..+..+++..++ .+++..|. +..++.+++ ..++.++.+|..+. ++ . +|
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~---~P-~-~D 160 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP---LP-V-AD 160 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC---CS-S-ES
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHhh---hc-c-cc
Confidence 3345556678999999999999999998875 68999997 666776666 56799999998732 22 3 99
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC--cEEEEEeccCCccccHH
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYSTCSIMVTENEA 322 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG--G~lvYsTCSi~~~ENe~ 322 (384)
+|++ ..+...|+.++. .+||+++...+ +|| |+|+....-+.....+.
T Consensus 161 ~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al----~pg~~g~llI~e~~~~~~~~~~ 209 (241)
T PF00891_consen 161 VYLL-------------RHVLHDWSDEDC-------VKILRNAAAAL----KPGKDGRLLIIEMVLPDDRTGP 209 (241)
T ss_dssp EEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHS----EECTTEEEEEEEEEECSSSSSH
T ss_pred ceee-------------ehhhhhcchHHH-------HHHHHHHHHHh----CCCCCCeEEEEeeccCCCCCCc
Confidence 9998 334556777665 67899999986 999 99998887665544443
No 215
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.78 E-value=0.0001 Score=69.50 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=65.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
...++||+|||-|+.|..++.+.+ .|+|.|.|+.|..+++ +-|.+ ++.. .+... .+.+||+|-|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~----~kg~~---vl~~--~~w~~--~~~~fDvIsc-- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLS----KKGFT---VLDI--DDWQQ--TDFKFDVISC-- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHH----hCCCe---EEeh--hhhhc--cCCceEEEee--
Confidence 356899999999999999999875 5999999998866554 44654 2221 12221 1258999975
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.-++.|. ..-..+|+.+.+.| +|+|+++.+
T Consensus 158 ----LNvLDRc----------------~~P~~LL~~i~~~l----~p~G~lilA 187 (265)
T PF05219_consen 158 ----LNVLDRC----------------DRPLTLLRDIRRAL----KPNGRLILA 187 (265)
T ss_pred ----hhhhhcc----------------CCHHHHHHHHHHHh----CCCCEEEEE
Confidence 3334332 12345788888876 999999876
No 216
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.78 E-value=1.7e-05 Score=81.78 Aligned_cols=110 Identities=24% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc------ccccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~------~~~~~~~~ 249 (384)
++++..|||+||||||.....++.|+.++.|+++|+-+-+ -+.++.....|.+.- .......+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 3578889999999999999999999988899999987632 133444444554421 11122246
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.|+||-|..- .+-..|..+ +..|..|-.+|+++....|+.||.+|--
T Consensus 111 advVLhDgap----------nVg~~w~~D-----A~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 111 ADVVLHDGAP----------NVGGNWVQD-----AFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CcEEeecCCC----------ccchhHHHH-----HHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 7999999642 222233322 2344445445544444445999996643
No 217
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.77 E-value=1.1e-05 Score=65.94 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=41.0
Q ss_pred EEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 183 IDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 183 LD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
|++|++.|..|.++++.++..+ +++++|..+. .+..++.+++.++. ++.++.+|..+....+..++||.|++|++-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 5789999999999999887654 7999999986 44555566656664 588999988765333324689999999861
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
+. ..-..-+..+++.| +|||.+|+
T Consensus 80 ~~-----------------------~~~~~dl~~~~~~l----~~ggviv~ 103 (106)
T PF13578_consen 80 SY-----------------------EAVLRDLENALPRL----APGGVIVF 103 (106)
T ss_dssp -H-----------------------HHHHHHHHHHGGGE----EEEEEEEE
T ss_pred CH-----------------------HHHHHHHHHHHHHc----CCCeEEEE
Confidence 11 12233466777775 99999986
No 218
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.75 E-value=0.00013 Score=74.83 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=78.1
Q ss_pred CceEEEeccCCChHHHHHHHHc---cCCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~---~~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
+..|||+|||+|-.+...++.. +...+|+|+|.++.....+++.+++.|. +.|+++++|.+++... +++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 4679999999999876554432 3346999999999999999888888888 4599999999987543 6899999
Q ss_pred EcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec--cCCccccHHHHH
Q 016730 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC--SIMVTENEAVID 325 (384)
Q Consensus 255 lDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC--Si~~~ENe~vv~ 325 (384)
... .|.+.-+. +--+.|..+-++| ||||+++=+.+ -+.|-+.+..-+
T Consensus 264 SEl----LGsfg~nE----------------l~pE~Lda~~rfL----kp~Gi~IP~~~t~ylaPiss~~l~~ 312 (448)
T PF05185_consen 264 SEL----LGSFGDNE----------------LSPECLDAADRFL----KPDGIMIPSSYTSYLAPISSPKLYQ 312 (448)
T ss_dssp E-------BTTBTTT----------------SHHHHHHHGGGGE----EEEEEEESSEEEEEEEEEE-HHHHH
T ss_pred Eec----cCCccccc----------------cCHHHHHHHHhhc----CCCCEEeCcchhhEEEEeeCHHHHH
Confidence 753 23322211 1123466666664 99999973222 344555555443
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.72 E-value=0.00011 Score=72.18 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=96.1
Q ss_pred HHHHHHhCC-HHHHHHHHHHcCC--CCCeEEEEcCCCCCHH------------HHHHHHHHcCCcccCCCcccc-ccEEE
Q 016730 79 IGALVEMFP-PVELMELIESFEK--PRPICLRTNTLKTRRR------------DLADVLINRGVNLDPLSKWSK-VGLVV 142 (384)
Q Consensus 79 ~~~l~~~~~-~~~~~~~~~~~~~--~~p~~~RvN~~k~~~~------------~~~~~L~~~g~~~~~~~~~~~-~~~~~ 142 (384)
+....+.+| .+.+..++++... +.--.+||-+..++.. -+.+.|.+.|+-.....+-.+ ..+.+
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 455566666 4677788888753 3334588876655432 233567777875433211111 11111
Q ss_pred ecCC-C-----CCCCCcccccceEEEeCCc---Ccchhhh------cC--------CCCCceEEEeccCCChHHHHHHHH
Q 016730 143 YDSQ-V-----PIGATPEYMAGFYMLQSAS---SFLPVMA------LA--------PQEKERVIDMAAAPGGKTTYIAAL 199 (384)
Q Consensus 143 ~~~~-~-----~~~~~~~~~~G~~~~Qd~s---s~l~~~~------L~--------~~~g~~VLD~cagpGgkt~~la~~ 199 (384)
.++. . ...++..|-.|...+..++ |.-...+ +. +.+|.+|||+||+|||.|-.+++.
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 1111 0 0123344555544443332 2211111 11 368999999999999999988876
Q ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 200 ~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
+..|+|+|..+ +...+ +.-.+|.....|+..+... .+.+|.|+||.-|
T Consensus 233 ---G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve 280 (357)
T PRK11760 233 ---GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVE 280 (357)
T ss_pred ---CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCCC--CCCCCEEEEeccc
Confidence 35999999543 22222 2335688888887765432 3789999999864
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00013 Score=67.50 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=63.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC-CCEEEEc
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLD 256 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~-fD~VllD 256 (384)
+.+|+|+|||+|-=+.-+|-..+ ...|+-+|...+|+.-++.-.+.+|++|+.++++.+.++.... . ||.|.+=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~---~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEK---KQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccccc---ccCcEEEee
Confidence 67999999999999988884444 4679999999999999999999999999999999888875432 3 9999863
No 221
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.00013 Score=70.03 Aligned_cols=92 Identities=22% Similarity=0.296 Sum_probs=77.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---C
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~ 246 (384)
++.+|.++|+...+|+.-|-||.|-.+++..+..|+++|+|.|+..++.+++.+..++ .++.+++....++.... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 4667889999999999999999999999999888899999999999999999999887 57888887766654322 2
Q ss_pred CCCCCEEEEcCCCCCC
Q 016730 247 LNTVDRVLLDAPCSGT 262 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~ 262 (384)
..++|-||+|---|+.
T Consensus 94 i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 94 IGKVDGILLDLGVSSP 109 (314)
T ss_pred CCceeEEEEeccCCcc
Confidence 3589999999776654
No 222
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.53 E-value=0.001 Score=61.25 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=84.8
Q ss_pred EEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
|.|+||-=|....+|.+.-. ..+++|+|+++.=++.+++++++.|+.+ +.+..+|+...-.. ++..|.|++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~--~e~~d~ivI----A 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP--GEDVDTIVI----A 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G--GG---EEEE----E
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC--CCCCCEEEE----e
Confidence 68999999999998887532 2479999999999999999999999765 88999998764322 134788877 3
Q ss_pred CCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 261 g~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
|.| ..+-.+||......+ +....||. .|.-+...+...|..++|.+++-
T Consensus 74 GMG--------------------G~lI~~ILe~~~~~~----~~~~~lIL-----qP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMG--------------------GELIIEILEAGPEKL----SSAKRLIL-----QPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE---------------------HHHHHHHHHHTGGGG----TT--EEEE-----EESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCC--------------------HHHHHHHHHhhHHHh----ccCCeEEE-----eCCCChHHHHHHHHHCCCEEEEe
Confidence 444 234567888887765 66667776 34467888998899999888763
No 223
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.51 E-value=0.00032 Score=60.51 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCC-CchhhccCCHHHHHH
Q 016730 205 LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK-DESVKTSKSLEDIQK 282 (384)
Q Consensus 205 ~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r-~p~~~~~~~~~~i~~ 282 (384)
+|+|+||.+..++..+++++..|+.+ +.+++..-..+....+.+++|.|+.+ .|.+.. |..+ ..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-----LGYLPggDk~i---------~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-----LGYLPGGDKSI---------TT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-----ESB-CTS-TTS---------B-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-----CCcCCCCCCCC---------Cc
Confidence 59999999999999999999999865 88887766666665543489999885 566654 2221 12
Q ss_pred HHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc---cccHHHHHHHHh
Q 016730 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV---TENEAVIDYALK 329 (384)
Q Consensus 283 l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~---~ENe~vv~~~l~ 329 (384)
....=..-|+.|+++| +|||.++...-.=|+ +|-++|.+|+-.
T Consensus 67 ~~~TTl~Al~~al~lL----~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 67 KPETTLKALEAALELL----KPGGIITIVVYPGHPGGKEESEAVEEFLAS 112 (140)
T ss_dssp -HHHHHHHHHHHHHHE----EEEEEEEEEE--STCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhh----ccCCEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 2222345678888886 999999887766676 566666666543
No 224
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.51 E-value=0.00019 Score=69.15 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=58.7
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCS 260 (384)
+|+|++||.||.+..+.+. +-..|+|+|+++..++..+.|.... +.+.|..++........+|.|+.+|||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999988766554 2347899999999999998886421 4467777664321025799999999997
Q ss_pred CCCcCCC
Q 016730 261 GTGVISK 267 (384)
Q Consensus 261 g~G~~~r 267 (384)
+.-...+
T Consensus 74 ~fS~ag~ 80 (275)
T cd00315 74 PFSIAGK 80 (275)
T ss_pred hhhHHhh
Confidence 7765554
No 225
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0003 Score=69.30 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=85.6
Q ss_pred eCCcCcchhhhcCCCC---CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 163 QSASSFLPVMALAPQE---KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 163 Qd~ss~l~~~~L~~~~---g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
|.-..-+.+.++..-. ..+|+|.-||+|--++-++--.+.. +|+++|+|++..+.+++|++.+...+..+++.|+.
T Consensus 34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN 112 (380)
T COG1867 34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDAN 112 (380)
T ss_pred hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHH
Confidence 3344444444443333 6789999999999999888776553 89999999999999999999996666777778887
Q ss_pred CcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 240 ~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+-... ...||+|=+||= |. + .-.++.|++.+ +.||.|..+
T Consensus 113 ~lm~~~-~~~fd~IDiDPF----GS------------P----------aPFlDaA~~s~----~~~G~l~vT 153 (380)
T COG1867 113 ALLHEL-HRAFDVIDIDPF----GS------------P----------APFLDAALRSV----RRGGLLCVT 153 (380)
T ss_pred HHHHhc-CCCccEEecCCC----CC------------C----------chHHHHHHHHh----hcCCEEEEE
Confidence 653221 168999999972 21 1 12688899886 888888654
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.47 E-value=0.00035 Score=66.72 Aligned_cols=86 Identities=22% Similarity=0.102 Sum_probs=68.1
Q ss_pred chhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CC
Q 016730 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GL 247 (384)
Q Consensus 169 l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~ 247 (384)
-.+..+++.+++.|||+|+|+|..|..|++.. ..|+++|+|+..++.+++... .-.++.++++|+..+.... -.
T Consensus 21 ~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 21 KIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhhc
Confidence 35666788899999999999999999998875 589999999999999988765 4568999999999875431 01
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
.....|+.+.|.
T Consensus 96 ~~~~~vv~NlPy 107 (262)
T PF00398_consen 96 NQPLLVVGNLPY 107 (262)
T ss_dssp SSEEEEEEEETG
T ss_pred CCceEEEEEecc
Confidence 345688888884
No 227
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=8.7e-05 Score=69.04 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=52.1
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc--cccCCCCCCEEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVDRVLL 255 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~--~~~~~~~fD~Vll 255 (384)
+||++|||-|....-|.+--++ .-.|+|+|.++..++.++++....- +++.....|.+... .....+.+|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999988877776544 2489999999999999999876543 34444455655421 1223366776644
No 228
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.45 E-value=0.00065 Score=63.18 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=73.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH------------cCCceEEEEecCCCCc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r------------~g~~~v~~~~~D~~~~ 241 (384)
+..+++.+||+.+||.|.-..+||+. +-.|+|+|+|+..++.+.+.... ....++.+.++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34577889999999999998888885 35899999999999887432111 1123578899999987
Q ss_pred ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 242 ~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+... .++||.|. | |+..-.+ +|+.+ .+-..+..++| +|||++++.|-..
T Consensus 110 ~~~~-~g~fD~iy-D--r~~l~Al--pp~~R---------------~~Ya~~l~~ll----~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 110 PPED-VGKFDLIY-D--RTFLCAL--PPEMR---------------ERYAQQLASLL----KPGGRGLLITLEY 158 (218)
T ss_dssp GGSC-HHSEEEEE-E--CSSTTTS---GGGH---------------HHHHHHHHHCE----EEEEEEEEEEEES
T ss_pred Chhh-cCCceEEE-E--ecccccC--CHHHH---------------HHHHHHHHHHh----CCCCcEEEEEEEc
Confidence 6432 25799996 3 3223222 23322 22344555664 9999976665443
No 229
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00045 Score=66.62 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=87.7
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCccccc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVL 245 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~~~v~~~~~D~~~~~~~~ 245 (384)
++....+.| .+||=+|-|.|+.+-.++.... -.+++.+|++++-++.+++-+.... -..+.++..|+.++-...
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 344445566 5999999999998888777654 3689999999999999998886654 245788889998876544
Q ss_pred CCCCCCEEEEcCC-CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcc
Q 016730 246 GLNTVDRVLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT 318 (384)
Q Consensus 246 ~~~~fD~VllDaP-CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ 318 (384)
. .+||+|++|.- +.|-| .-+ ...+.++.+.+.| +++|.+|.-+=|.+-.
T Consensus 147 ~-~~fDvIi~D~tdp~gp~--------~~L-----------ft~eFy~~~~~~L----~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 147 E-EKFDVIIVDSTDPVGPA--------EAL-----------FTEEFYEGCRRAL----KEDGIFVAQAGSPFLQ 196 (282)
T ss_pred C-CcCCEEEEcCCCCCCcc--------ccc-----------CCHHHHHHHHHhc----CCCcEEEEecCCcccc
Confidence 3 48999999953 11111 011 2345667777775 9999999875554433
No 230
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00014 Score=73.73 Aligned_cols=108 Identities=22% Similarity=0.316 Sum_probs=84.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccc--cCCCCCCE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKV--LGLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~--~~~~~fD~ 252 (384)
-.++-+|||+-+|+|--++..|..+++-+.|+|+|.++..++..++|.+.+++.+ ++....|+..+--. .....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3467799999999999999999999888899999999999999999999998876 55666777654211 11268999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|=+||= |. + -.+|+.|++.+ +.||.| +.|||
T Consensus 187 IDLDPy----Gs------------~----------s~FLDsAvqav----~~gGLL-~vT~T 217 (525)
T KOG1253|consen 187 IDLDPY----GS------------P----------SPFLDSAVQAV----RDGGLL-CVTCT 217 (525)
T ss_pred EecCCC----CC------------c----------cHHHHHHHHHh----hcCCEE-EEEec
Confidence 999973 21 0 13789999997 787765 67776
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.42 E-value=0.00049 Score=58.83 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=50.1
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~ 239 (384)
.|||+||+.|..+..++...+ .++|+++|.++..++.+++|++.+++.++.+.+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999888754 3689999999999999999999999888877765544
No 232
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.39 E-value=0.00071 Score=64.11 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~ 249 (384)
+...+.++++.||++|-|||..|..|.+.. .+|+|+|+|+.++..+.++.+-.-.. ...++.+|....+. ..
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P~ 123 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----PR 123 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----cc
Confidence 344467899999999999999999888874 57999999999999998877543332 37788899877542 57
Q ss_pred CCEEEEcCCC--CCCCcCC--CCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 250 VDRVLLDAPC--SGTGVIS--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 250 fD~VllDaPC--Sg~G~~~--r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
||.++.+.|. |+-++.- .++.+-|. ...-+|++. |.+++ ..-|...|+--|++
T Consensus 124 fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLv----a~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 124 FDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLV----ARPGDSLYCRLSIN 180 (315)
T ss_pred cceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhc----cCCCCchhceeehh
Confidence 9999999997 4444321 11211111 112345544 44554 44467778777764
No 233
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.36 E-value=0.01 Score=52.81 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=92.7
Q ss_pred eccCCChHHHHHHHHccCCceEEEE--eCCHHHHHH---HHHHHHHcCCce-EEEEecCCCCccccc--CCCCCCEEEEc
Q 016730 185 MAAAPGGKTTYIAALMKNTGLIYAN--EMKASRLKS---LTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVLLD 256 (384)
Q Consensus 185 ~cagpGgkt~~la~~~~~~g~V~a~--D~~~~rl~~---l~~n~~r~g~~~-v~~~~~D~~~~~~~~--~~~~fD~VllD 256 (384)
+|=|--+++..|+...+....|+|. |....-.+. +..|++.+.-.+ .+....|++.+...+ ....||+|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 3445556677777776533455554 443332222 335665552222 234467999887665 56789999999
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
=|+.|.|. ......+.....+-..++.+|..+| +++|.+..+-|.-.|- +.-.|..+.++.++.++
T Consensus 83 FPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L----~~~G~IhVTl~~~~py-~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 83 FPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLL----KPDGEIHVTLKDGQPY-DSWNIEELAAEAGLVLV 148 (166)
T ss_pred CCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCCC-ccccHHHHHHhcCCEEE
Confidence 99998543 1234455556666677888888885 9999999999988775 55667777788888886
Q ss_pred ec
Q 016730 337 PC 338 (384)
Q Consensus 337 ~~ 338 (384)
..
T Consensus 149 ~~ 150 (166)
T PF10354_consen 149 RK 150 (166)
T ss_pred EE
Confidence 54
No 234
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.35 E-value=0.0017 Score=59.55 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=85.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE-EEecCCCCccccc------CCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVL------GLNTV 250 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~-~~~~D~~~~~~~~------~~~~f 250 (384)
.+.+||+++||+|-.+.|+|+.++. -.-.-.|.+...+..+...+...|+.|+. -+..|+...+-.+ ....|
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 3446999999999999999999986 56677899999999999999999988752 3445666542212 13589
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEE-EEeccCC----ccccHHHHH
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSIM----VTENEAVID 325 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lv-YsTCSi~----~~ENe~vv~ 325 (384)
|.|++= ..-.|..-... ..++..|.++| ++||.|+ |---... ++-|+ .-+
T Consensus 104 D~i~~~-------------------N~lHI~p~~~~-~~lf~~a~~~L----~~gG~L~~YGPF~~~G~~ts~SN~-~FD 158 (204)
T PF06080_consen 104 DAIFCI-------------------NMLHISPWSAV-EGLFAGAARLL----KPGGLLFLYGPFNRDGKFTSESNA-AFD 158 (204)
T ss_pred ceeeeh-------------------hHHHhcCHHHH-HHHHHHHHHhC----CCCCEEEEeCCcccCCEeCCcHHH-HHH
Confidence 999861 11111111122 45778888875 9999886 6554442 33343 344
Q ss_pred HHHhcC
Q 016730 326 YALKKR 331 (384)
Q Consensus 326 ~~l~~~ 331 (384)
.-|+..
T Consensus 159 ~sLr~r 164 (204)
T PF06080_consen 159 ASLRSR 164 (204)
T ss_pred HHHhcC
Confidence 455543
No 235
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.33 E-value=0.00052 Score=64.22 Aligned_cols=86 Identities=20% Similarity=0.119 Sum_probs=58.5
Q ss_pred cchhhhcCCCCCc--eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC----C-----ceEEEEec
Q 016730 168 FLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----V-----TNTIVCNY 236 (384)
Q Consensus 168 ~l~~~~L~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g----~-----~~v~~~~~ 236 (384)
...+.++++++|. +|||+.||-|.-++.+|.+ + ++|+++|.|+--...++.-+++.. . .++.++++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4566777777775 8999999999999998875 2 689999999998888887776652 1 36889999
Q ss_pred CCCCcccccCCCCCCEEEEcC
Q 016730 237 DGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 237 D~~~~~~~~~~~~fD~VllDa 257 (384)
|+..+-. .....||+|.+||
T Consensus 140 d~~~~L~-~~~~s~DVVY~DP 159 (234)
T PF04445_consen 140 DALEYLR-QPDNSFDVVYFDP 159 (234)
T ss_dssp -CCCHCC-CHSS--SEEEE--
T ss_pred CHHHHHh-hcCCCCCEEEECC
Confidence 9998754 3347899999998
No 236
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.26 E-value=0.00075 Score=59.55 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=57.3
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHH
Q 016730 207 YANEMKASRLKSLTANLHRMG---VTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283 (384)
Q Consensus 207 ~a~D~~~~rl~~l~~n~~r~g---~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l 283 (384)
+|+|+|+.+++.++++....+ ..++.++.+|+.+++. ..+.||.|++. .+. + +..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~fD~v~~~-----~~l-~------~~~-------- 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--DDCEFDAVTMG-----YGL-R------NVV-------- 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--CCCCeeEEEec-----chh-h------cCC--------
Confidence 479999999999987765322 3568999999998863 34789999862 221 1 110
Q ss_pred HHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 284 ~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
...+.|+++.+.| ||||+++....+-
T Consensus 59 --d~~~~l~ei~rvL----kpGG~l~i~d~~~ 84 (160)
T PLN02232 59 --DRLRAMKEMYRVL----KPGSRVSILDFNK 84 (160)
T ss_pred --CHHHHHHHHHHHc----CcCeEEEEEECCC
Confidence 1245678888875 9999999876653
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00037 Score=63.01 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=56.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
.|.+|||+|||+|--+...+. .+...|++.|+++-....++-|.+.+|+ ++.++..|... . ...||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEe
Confidence 589999999999986654333 3456899999999999999999999996 57777777665 2 268999997
No 238
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.21 E-value=0.0022 Score=59.07 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=52.2
Q ss_pred hhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH-------HcCC--ceEEEEecCCCCcc
Q 016730 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH-------RMGV--TNTIVCNYDGNELP 242 (384)
Q Consensus 172 ~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~-------r~g~--~~v~~~~~D~~~~~ 242 (384)
..+++.+++..+|+|||.|...++.|... +-.+.+++|+.+...+.++.+.+ .+|. ..+.+..+|..+.+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 44578899999999999998777666544 44569999999998877665443 3454 35777888887643
Q ss_pred c---ccCCCCCCEEEEcCCC
Q 016730 243 K---VLGLNTVDRVLLDAPC 259 (384)
Q Consensus 243 ~---~~~~~~fD~VllDaPC 259 (384)
. ++ ...|+|+++-=|
T Consensus 115 ~~~~~~--s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 115 FVKDIW--SDADVVFVNNTC 132 (205)
T ss_dssp HHHHHG--HC-SEEEE--TT
T ss_pred hHhhhh--cCCCEEEEeccc
Confidence 1 22 457999997654
No 239
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.19 E-value=0.003 Score=62.05 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=81.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccC---CceEEEEeCCHHHHHHHHHHHHHcCCceEEE--EecCCCCcccccC----C
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIV--CNYDGNELPKVLG----L 247 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~--~~~D~~~~~~~~~----~ 247 (384)
.++..++|+|||.|.||..|++.+.. ...-+++|+|.+.|+.+.+++..-....+.+ +++|..+...+.. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 46778999999999999998887753 2468999999999999999998334444444 6777755422221 1
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH-chhccCCCCcEEEEEeccCCccccHHHHHH
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~-~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~ 326 (384)
.....|+. |=|..|-+ .+.+ ...+|....+ .| +|||.|+... .-.-+.++|..
T Consensus 155 ~~~r~~~f--lGSsiGNf----------~~~e-------a~~fL~~~~~~~l----~~~d~lLiG~---D~~k~~~~l~~ 208 (319)
T TIGR03439 155 SRPTTILW--LGSSIGNF----------SRPE-------AAAFLAGFLATAL----SPSDSFLIGL---DGCKDPDKVLR 208 (319)
T ss_pred CCccEEEE--eCccccCC----------CHHH-------HHHHHHHHHHhhC----CCCCEEEEec---CCCCCHHHHHH
Confidence 23455554 33444432 2222 2346666666 54 9999998854 44455666655
Q ss_pred HHh
Q 016730 327 ALK 329 (384)
Q Consensus 327 ~l~ 329 (384)
+..
T Consensus 209 AY~ 211 (319)
T TIGR03439 209 AYN 211 (319)
T ss_pred Hhc
Confidence 443
No 240
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.17 E-value=0.0023 Score=62.13 Aligned_cols=120 Identities=26% Similarity=0.298 Sum_probs=79.3
Q ss_pred cccceEEEeCCcCc-chhhhcCCCCCceEEEeccCCChHHHH-HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 155 YMAGFYMLQSASSF-LPVMALAPQEKERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 155 ~~~G~~~~Qd~ss~-l~~~~L~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|.+|.+ +|..|-. -+....+.++|.+||=+||||=|..+. .|+.+ +..+|+..|+++.|++.+++ +|.+.+.
T Consensus 146 ~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 146 FEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred hhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 345533 4444322 244555788999999999999666554 45555 45899999999999999876 7887655
Q ss_pred EEecCCCCc-------ccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 233 VCNYDGNEL-------PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 233 ~~~~D~~~~-------~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
...... .. ........||..+- |||..+ -++.|+..+ ++|
T Consensus 220 ~~~~~~-~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~----r~g 266 (354)
T KOG0024|consen 220 PSSHKS-SPQELAELVEKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKAT----RSG 266 (354)
T ss_pred eccccc-cHHHHHHHHHhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHh----ccC
Confidence 433322 11 11122245898875 888753 245566665 999
Q ss_pred cEEEEEec
Q 016730 306 GYIVYSTC 313 (384)
Q Consensus 306 G~lvYsTC 313 (384)
|+++..-|
T Consensus 267 Gt~vlvg~ 274 (354)
T KOG0024|consen 267 GTVVLVGM 274 (354)
T ss_pred CEEEEecc
Confidence 99888765
No 241
>PRK04148 hypothetical protein; Provisional
Probab=97.16 E-value=0.002 Score=55.21 Aligned_cols=69 Identities=3% Similarity=-0.069 Sum_probs=50.3
Q ss_pred CCCCceEEEeccCCCh-HHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 176 PQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 176 ~~~g~~VLD~cagpGg-kt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
..++.+|||+|+|.|. .+..|++. +..|+|+|+++.+++.++++ + +.++..|..+....+ .+.+|.|.
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~-y~~a~liy 82 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI-YKNAKLIY 82 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH-HhcCCEEE
Confidence 3456889999999996 55555543 35899999999988777654 3 456678888764332 26899997
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
.
T Consensus 83 s 83 (134)
T PRK04148 83 S 83 (134)
T ss_pred E
Confidence 5
No 242
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.13 E-value=0.0014 Score=68.33 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=94.7
Q ss_pred cceEEEeCCcCcchhhhcCCC--CCceEEEeccCCChHHHHHHHHcc---CCceEEEEeCCHHHHHHHHHHHHHcCCc--
Q 016730 157 AGFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (384)
Q Consensus 157 ~G~~~~Qd~ss~l~~~~L~~~--~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~D~~~~rl~~l~~n~~r~g~~-- 229 (384)
.|.++.-..-..+.+.++.+. |+..|.|+|||+|+.-......+. ....+++.+.........+.|+.-.|+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 344444333334445566654 678999999999997654333322 1246899999999999999888766653
Q ss_pred eEEEEecCCCCcccccCCCCCCEEEEcCCCCCC---CcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCc
Q 016730 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (384)
Q Consensus 230 ~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~---G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG 306 (384)
......+|....+......+||.|+.|||.+.. |.........+.+....+..+.......+.++...| ++||
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L----~~gG 349 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVL----GQEG 349 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhc----CCCC
Confidence 223334454433322233579999999998764 211110010011100001122334566777788775 9999
Q ss_pred EEEEE-eccCCccccHH-HHH-HHHhcC
Q 016730 307 YIVYS-TCSIMVTENEA-VID-YALKKR 331 (384)
Q Consensus 307 ~lvYs-TCSi~~~ENe~-vv~-~~l~~~ 331 (384)
+.... .=.+...-+++ ++. .++...
T Consensus 350 ~~aiI~~~gvl~~~~~e~~ir~~lL~~~ 377 (501)
T TIGR00497 350 TAAIVCFPGILYREGKEQTIRKYLVDQN 377 (501)
T ss_pred eEEEEecCCcccCCCchHHHHHHHHHcC
Confidence 75432 22333333433 343 566554
No 243
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0023 Score=59.72 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCCCc-eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccccCCCCCCEE
Q 016730 176 PQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 176 ~~~g~-~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
..++. .++|+|||+|--+..+++..+ .|+|.|+|+.+|+.+++.-.--- .....+...+...+.. ..+++|.|
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SVDlI 104 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESVDLI 104 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCcceeee
Confidence 34455 799999999955556777754 59999999999998775432110 0112232333333321 13789999
Q ss_pred EE
Q 016730 254 LL 255 (384)
Q Consensus 254 ll 255 (384)
++
T Consensus 105 ~~ 106 (261)
T KOG3010|consen 105 TA 106 (261)
T ss_pred hh
Confidence 86
No 244
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.95 E-value=0.0054 Score=59.40 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=69.1
Q ss_pred ceEEEeccCCChH----HHHHHHHccC---CceEEEEeCCHHHHHHHHHHH--------------HHc---------C--
Q 016730 180 ERVIDMAAAPGGK----TTYIAALMKN---TGLIYANEMKASRLKSLTANL--------------HRM---------G-- 227 (384)
Q Consensus 180 ~~VLD~cagpGgk----t~~la~~~~~---~g~V~a~D~~~~rl~~l~~n~--------------~r~---------g-- 227 (384)
-+||.+||++|-= ++.+.+..+. .-+|+|.|+|+..++.+++.. +++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 6899999999964 3333343322 347999999999999987652 110 1
Q ss_pred -C-----ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 016730 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (384)
Q Consensus 228 -~-----~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~ 301 (384)
+ ..|.+...|....+. ...+.||+|+| |+ +....+ ...|.+++....+.|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~-~~~~~fD~I~c-----------RN--vliyF~-------~~~~~~vl~~l~~~L--- 252 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW-AVPGPFDAIFC-----------RN--VMIYFD-------KTTQERILRRFVPLL--- 252 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC-ccCCCcceeeH-----------hh--HHhcCC-------HHHHHHHHHHHHHHh---
Confidence 1 135666666655321 11368999997 11 111111 235788899999886
Q ss_pred CCCCcEEEEEe
Q 016730 302 SKSGGYIVYST 312 (384)
Q Consensus 302 lkpGG~lvYsT 312 (384)
+|||+|+...
T Consensus 253 -~pgG~L~lG~ 262 (287)
T PRK10611 253 -KPDGLLFAGH 262 (287)
T ss_pred -CCCcEEEEeC
Confidence 9999998765
No 245
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.91 E-value=0.0083 Score=58.49 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.|..|||+|||+|-.+...++. +..+|+|+|.|. +.+-++..++.+.+. .+.++.+...++.. .++.|+|+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccC---chhccEEEec
Confidence 4778999999999988876665 346999999764 667777777766654 47787777766542 2789999987
Q ss_pred C
Q 016730 257 A 257 (384)
Q Consensus 257 a 257 (384)
|
T Consensus 251 P 251 (517)
T KOG1500|consen 251 P 251 (517)
T ss_pred c
Confidence 6
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0035 Score=58.48 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHH-HHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~-l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
+|..|||+||.+||+|-.+++. +..+|+|+|+....+.- ++ ....-+..-..+++.+....-.+..|.|++|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR-----~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR-----NDPRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh-----cCCcEEEEecCChhhCCHHHcccCCCeEEEE
Confidence 6899999999999999988886 35699999997644321 21 1222234444566655322212478999999
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
..
T Consensus 152 vS 153 (245)
T COG1189 152 VS 153 (245)
T ss_pred ee
Confidence 76
No 247
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.86 E-value=0.0055 Score=59.38 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=76.9
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc-ccCCCCCCEEEEcCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPC 259 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~fD~VllDaPC 259 (384)
+|+|+|||.||.+.-+-+.- --.|.|+|+++...+..+.|.. .....|.+.+.. .++. .+|+++.-|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccCC
Confidence 79999999999887766542 2379999999999999999875 555688877642 2221 59999999999
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH---hcCCCEE
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL---KKRDVKL 335 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l---~~~~~~l 335 (384)
.+.-...++.... .+.. .| -.++++-+ +.+ +|--.|+=-.-.+....+...++.++ ++.|..+
T Consensus 72 Q~fS~ag~~~~~~---d~r~--~L---~~~~~~~v-~~~----~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v 137 (335)
T PF00145_consen 72 QGFSIAGKRKGFD---DPRN--SL---FFEFLRIV-KEL----KPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNV 137 (335)
T ss_dssp TTTSTTSTHHCCC---CHTT--SH---HHHHHHHH-HHH----S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE
T ss_pred ceEeccccccccc---cccc--hh---hHHHHHHH-hhc----cceEEEecccceeeccccccccccccccccccceee
Confidence 8887776522211 1111 11 12222222 222 88755554445555555545555444 4445443
No 248
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.78 E-value=0.0054 Score=58.95 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceEEEeccCCChHHHHH-HHHccCCceEEEEeCCHHHHHHHHHHHH-HcCCc-eEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 180 ERVIDMAAAPGGKTTYI-AALMKNTGLIYANEMKASRLKSLTANLH-RMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~l-a~~~~~~g~V~a~D~~~~rl~~l~~n~~-r~g~~-~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|+=+||||=-.|..+ ++.......|+++|+|+.+.+.+++.++ .+|+. .+.+..+|+......+ ..||+|++-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEEh
Confidence 49999999998777654 4443334689999999999999998888 56664 4788889988765433 689999985
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
+-- |+ +.+ --.++|.+..+.+ +||..++|=
T Consensus 200 alV---g~-----------~~e-------~K~~Il~~l~~~m----~~ga~l~~R 229 (276)
T PF03059_consen 200 ALV---GM-----------DAE-------PKEEILEHLAKHM----APGARLVVR 229 (276)
T ss_dssp TT----S----------------------SHHHHHHHHHHHS-----TTSEEEEE
T ss_pred hhc---cc-----------ccc-------hHHHHHHHHHhhC----CCCcEEEEe
Confidence 431 11 000 1145888888875 999999874
No 249
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.77 E-value=0.0057 Score=59.36 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=79.1
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEecC-CCCc-cc-ccCCCCCCEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCNYD-GNEL-PK-VLGLNTVDRV 253 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~-v~~~~~D-~~~~-~~-~~~~~~fD~V 253 (384)
.-++||+|+|.-..--.|+....+ -.++|.|+|+..++.+++|++++ ++++ |.+.... ...+ .. ....+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 458999999999876666666543 69999999999999999999999 8864 6555432 2121 11 1123689999
Q ss_pred EEcCCCCCCC------cCCCC------------chhhccCCH-HHHHH--HHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 254 LLDAPCSGTG------VISKD------------ESVKTSKSL-EDIQK--CSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 254 llDaPCSg~G------~~~r~------------p~~~~~~~~-~~i~~--l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+|+||--.+- .-++. |.....-+. +-+.. =...-.+++.....+ + ..+..-|
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-----~--~~v~WfT 254 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQL-----K--DQVRWFT 254 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-----G--GGEEEEE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHh-----C--CCcEEEe
Confidence 9999974432 11111 111110000 11111 112334567776665 2 3445556
Q ss_pred ccCCccccHHHHHHHHhcCCC
Q 016730 313 CSIMVTENEAVIDYALKKRDV 333 (384)
Q Consensus 313 CSi~~~ENe~vv~~~l~~~~~ 333 (384)
|-+...+|-.-+...|++.++
T Consensus 255 smvgKkssL~~l~~~L~~~~~ 275 (299)
T PF05971_consen 255 SMVGKKSSLKPLKKELKKLGA 275 (299)
T ss_dssp EEESSGGGHHHHHHHHHHTT-
T ss_pred ecccCcccHHHHHHHHHhcCC
Confidence 788999999999988887653
No 250
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.73 E-value=0.013 Score=56.08 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=69.4
Q ss_pred ceEEEeccCCCh----HHHHHHHHccC----CceEEEEeCCHHHHHHHHHHHH----H-cCC------------------
Q 016730 180 ERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLH----R-MGV------------------ 228 (384)
Q Consensus 180 ~~VLD~cagpGg----kt~~la~~~~~----~g~V~a~D~~~~rl~~l~~n~~----r-~g~------------------ 228 (384)
-+||-++|++|- .++.+.+..+. .-.|+|.|+|...|+.++.-.= . -|+
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 489999999995 45555565543 4689999999999998863210 0 011
Q ss_pred ------ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccC
Q 016730 229 ------TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302 (384)
Q Consensus 229 ------~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~l 302 (384)
+.|.+...|...-.. ..+.||+|+| ||==|.+ + ...|.+++..-...|
T Consensus 178 v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfC-----------RNVLIYF--d-------~~~q~~il~~f~~~L---- 231 (268)
T COG1352 178 VKEELRKMVRFRRHNLLDDSP--FLGKFDLIFC-----------RNVLIYF--D-------EETQERILRRFADSL---- 231 (268)
T ss_pred EChHHhcccEEeecCCCCCcc--ccCCCCEEEE-----------cceEEee--C-------HHHHHHHHHHHHHHh----
Confidence 124444445443221 2367999998 3222222 1 347899999999986
Q ss_pred CCCcEEEEEe
Q 016730 303 KSGGYIVYST 312 (384)
Q Consensus 303 kpGG~lvYsT 312 (384)
+|||.|+.-.
T Consensus 232 ~~gG~LflG~ 241 (268)
T COG1352 232 KPGGLLFLGH 241 (268)
T ss_pred CCCCEEEEcc
Confidence 9999998643
No 251
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.73 E-value=0.0042 Score=60.28 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=81.6
Q ss_pred CcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC--c----eEEEEecCCCC
Q 016730 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--T----NTIVCNYDGNE 240 (384)
Q Consensus 167 s~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~--~----~v~~~~~D~~~ 240 (384)
|+|.-... ++++.|+|+|||-||-.+-.-.. +-+.++++||..--++.++.+-+.+.- . .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 34444443 57889999999999965533322 236899999998888888766654421 1 25677777764
Q ss_pred c--ccc--cCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 241 L--PKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 241 ~--~~~--~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
- ... .++.+||+|-|-=.| .+.+..+. .-+.+|.++...| ||||+++=++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~------------HYaFetee------~ar~~l~Nva~~L----kpGG~FIgTi---- 237 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAF------------HYAFETEE------SARIALRNVAKCL----KPGGVFIGTI---- 237 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeE------------eeeeccHH------HHHHHHHHHHhhc----CCCcEEEEec----
Confidence 2 111 123458988652211 22232221 2245788888886 9999998654
Q ss_pred ccccHHHHHHHHhcC
Q 016730 317 VTENEAVIDYALKKR 331 (384)
Q Consensus 317 ~~ENe~vv~~~l~~~ 331 (384)
-|-++|-+-|+..
T Consensus 238 --Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 238 --PDSDVIIKRLRAG 250 (389)
T ss_pred --CcHHHHHHHHHhc
Confidence 5666766655543
No 252
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.68 E-value=0.0092 Score=54.84 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
++-.|-|+|||-+..+ +..++.-.|..+|+-.. |-.++..|....|- +++.+|++++
T Consensus 72 ~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL--~~~svDv~Vf-- 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPL--EDESVDVAVF-- 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S----TT-EEEEEE--
T ss_pred CCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcC--CCCceeEEEE--
Confidence 4578999999998744 45555457999997652 22355688888774 4589999998
Q ss_pred CC-CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEe
Q 016730 258 PC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (384)
Q Consensus 258 PC-Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~ 336 (384)
| |-.|+ --...|.+|++.| ||||.|..+--. ..-+|...-...++..||++.
T Consensus 129 -cLSLMGT---------------------n~~~fi~EA~RvL----K~~G~L~IAEV~-SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 129 -CLSLMGT---------------------NWPDFIREANRVL----KPGGILKIAEVK-SRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp -ES---SS----------------------HHHHHHHHHHHE----EEEEEEEEEEEG-GG-S-HHHHHHHHHCTTEEEE
T ss_pred -EhhhhCC---------------------CcHHHHHHHHhee----ccCcEEEEEEec-ccCcCHHHHHHHHHHCCCeEE
Confidence 5 33443 1245789999996 999999766422 223455544456778898887
Q ss_pred ec
Q 016730 337 PC 338 (384)
Q Consensus 337 ~~ 338 (384)
..
T Consensus 182 ~~ 183 (219)
T PF05148_consen 182 SK 183 (219)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 253
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.68 E-value=0.0074 Score=55.23 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCceEEEeccCCChHH----HHHHHHccC----CceEEEEeCCHHHHHHHHHH--------------HHHc-----C---
Q 016730 178 EKERVIDMAAAPGGKT----TYIAALMKN----TGLIYANEMKASRLKSLTAN--------------LHRM-----G--- 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt----~~la~~~~~----~g~V~a~D~~~~rl~~l~~n--------------~~r~-----g--- 227 (384)
+.-+||.+||++|-=+ +.+.+..+. .-+|+|.|+|+..++.+++- ++++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 3468999999999643 333342221 24899999999999988642 1221 1
Q ss_pred -C-----ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 016730 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (384)
Q Consensus 228 -~-----~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~ 301 (384)
+ +.|.+...|..+.+. ..+.||+|+| |+= ....+ ...|.++++...+.|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~--~~~~fD~I~C-----------RNV--lIYF~-------~~~~~~vl~~l~~~L--- 165 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP--PFGRFDLIFC-----------RNV--LIYFD-------PETQQRVLRRLHRSL--- 165 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE------------SS--GGGS--------HHHHHHHHHHHGGGE---
T ss_pred eEChHHcCceEEEecccCCCCc--ccCCccEEEe-----------cCE--EEEeC-------HHHHHHHHHHHHHHc---
Confidence 1 247777788777222 2378999998 332 12222 245788999988886
Q ss_pred CCCCcEEEEEec
Q 016730 302 SKSGGYIVYSTC 313 (384)
Q Consensus 302 lkpGG~lvYsTC 313 (384)
+|||+|+....
T Consensus 166 -~pgG~L~lG~s 176 (196)
T PF01739_consen 166 -KPGGYLFLGHS 176 (196)
T ss_dssp -EEEEEEEE-TT
T ss_pred -CCCCEEEEecC
Confidence 99999998654
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.64 E-value=0.0049 Score=56.17 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=82.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC-------CceEEEEecCCCCc-ccccCCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------VTNTIVCNYDGNEL-PKVLGLNTV 250 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-------~~~v~~~~~D~~~~-~~~~~~~~f 250 (384)
.-.+.|+|||-||....++.+.+. ..|++.||..+-.+-+++++..++ ..|+.+....+..+ |..+..+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346899999999999999999875 789999998887777777777765 66777777776654 444433334
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc-HHHHHHHHh
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-EAVIDYALK 329 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN-e~vv~~~l~ 329 (384)
+.++.= -++|..+-.+.+..+ .+..++..-.-+ |++||.+.++|= .+|- +..+..+.+
T Consensus 140 skmff~---------fpdpHfk~~khk~ri-----i~~~l~~eyay~----l~~gg~~ytitD---v~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 140 SKMFFL---------FPDPHFKARKHKWRI-----ITSTLLSEYAYV----LREGGILYTITD---VKELHEWMVKHLEE 198 (249)
T ss_pred ccceee---------cCChhHhhhhcccee-----echhHHHHHHhh----hhcCceEEEEee---HHHHHHHHHHHHHh
Confidence 444331 234444333322222 223344444444 499999988772 2333 333444444
Q ss_pred cCCCEE
Q 016730 330 KRDVKL 335 (384)
Q Consensus 330 ~~~~~l 335 (384)
++-++.
T Consensus 199 hplfe~ 204 (249)
T KOG3115|consen 199 HPLFER 204 (249)
T ss_pred CcHhhh
Confidence 443443
No 255
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.57 E-value=0.034 Score=51.28 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHc------------------------------
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM------------------------------ 226 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~------------------------------ 226 (384)
..-+++|-|||.|..-+.+.-+-++. ..|+|-|+|++.++.++.|+..+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34579999999999887776654332 37999999999999888887521
Q ss_pred ------------CCceEEEEecCCCCccc---ccCCCCCCEEEEcCCCCCCCcCCCCchhhccC-CHHHHHHHHHHHHHH
Q 016730 227 ------------GVTNTIVCNYDGNELPK---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSK-SLEDIQKCSYLQKQL 290 (384)
Q Consensus 227 ------------g~~~v~~~~~D~~~~~~---~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~-~~~~i~~l~~~Q~~i 290 (384)
|.....+...|.++... ...+...|.|+.|.|+...- .|.- ...+ --.++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t--------~W~g~~~~~------p~~~m 196 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT--------SWQGEGSGG------PVAQM 196 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS--------STTS---HH------HHHHH
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc--------cccCCCCCC------cHHHH
Confidence 12234566778776421 11234579999999973331 2332 1111 22456
Q ss_pred HHHHHHchhccCCCCcEEEEE
Q 016730 291 ILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 291 L~~a~~~L~~~lkpGG~lvYs 311 (384)
|+..... |.++++++.|
T Consensus 197 l~~l~~v----Lp~~sVV~v~ 213 (246)
T PF11599_consen 197 LNSLAPV----LPERSVVAVS 213 (246)
T ss_dssp HHHHHCC----S-TT-EEEEE
T ss_pred HHHHHhh----CCCCcEEEEe
Confidence 7777766 4655566553
No 256
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.56 E-value=0.0051 Score=56.81 Aligned_cols=135 Identities=15% Similarity=0.061 Sum_probs=78.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
...+.||+|||-|..|-+++... -.+|..+|..++-++.+++.+..-+..-..+.+.-..++... ..+||+|.+-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~Q- 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWIQ- 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEEE-
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEeh-
Confidence 45789999999999998764433 348999999999999999765442222344555544444221 2689999861
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE-eccCCcc-----c------cHHHHH
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS-TCSIMVT-----E------NEAVID 325 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs-TCSi~~~-----E------Ne~vv~ 325 (384)
......+.+++ .++|.++...| +|||.||.= .||-... | ..+...
T Consensus 130 ------------W~lghLTD~dl-------v~fL~RCk~~L----~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 130 ------------WCLGHLTDEDL-------VAFLKRCKQAL----KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp ------------S-GGGS-HHHH-------HHHHHHHHHHE----EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred ------------HhhccCCHHHH-------HHHHHHHHHhC----cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 11113455554 45678888876 999998853 1221111 1 234556
Q ss_pred HHHhcCCCEEeecCC
Q 016730 326 YALKKRDVKLVPCGL 340 (384)
Q Consensus 326 ~~l~~~~~~l~~~~~ 340 (384)
.+.++.+++++....
T Consensus 187 ~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 187 ELFKQAGLRLVKEEK 201 (218)
T ss_dssp HHHHHCT-EEEEEEE
T ss_pred HHHHHcCCEEEEecc
Confidence 666777888876543
No 257
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.52 E-value=0.009 Score=51.48 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHcc---CCceEEEEeCCHHHHHHHHHHHHHcC--C-ceEEEEecC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYD 237 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~D~~~~rl~~l~~n~~r~g--~-~~v~~~~~D 237 (384)
.+...|+|+|||-|..+..++.+++ ....|+++|.++...+.+....++++ . .+..+...+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccc
Confidence 5678999999999999999998542 34689999999999999999999888 4 334444443
No 258
>PRK00536 speE spermidine synthase; Provisional
Probab=96.35 E-value=0.047 Score=52.19 Aligned_cols=108 Identities=10% Similarity=-0.007 Sum_probs=69.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--Cc--eEEEEecCCCCccccc
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--VT--NTIVCNYDGNELPKVL 245 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g--~~--~v~~~~~D~~~~~~~~ 245 (384)
+++..-+. -.+||=+|.|-||..-.++.. ..+|+-+|+|+..++..++-+-.+. .+ ++.++.. +.. .
T Consensus 65 ppl~~h~~-pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~-~ 135 (262)
T PRK00536 65 MGGCTKKE-LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLD-L 135 (262)
T ss_pred HHHhhCCC-CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhh-c
Confidence 33433344 479999999999987776665 2489999999999999998554432 22 3555431 111 1
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCc
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~ 317 (384)
..++||+|++|.. .+ .+..+.+.+. |+|||.+|.=+-|...
T Consensus 136 ~~~~fDVIIvDs~----------------~~-----------~~fy~~~~~~----L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 136 DIKKYDLIICLQE----------------PD-----------IHKIDGLKRM----LKEDGVFISVAKHPLL 176 (262)
T ss_pred cCCcCCEEEEcCC----------------CC-----------hHHHHHHHHh----cCCCcEEEECCCCccc
Confidence 1268999999942 01 1233444555 4999999985555543
No 259
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.27 E-value=0.12 Score=41.96 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=67.0
Q ss_pred EEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC--cccccCC-CCCCEEEEcCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE--LPKVLGL-NTVDRVLLDAP 258 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~--~~~~~~~-~~fD~VllDaP 258 (384)
|+|++||+|..+ .++........++++|.++..+...+......+...+.+...|... ++ +.. ..||.+.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeeeee
Confidence 999999999877 5555543323789999999998885555443222114566666554 22 222 36888833222
Q ss_pred CCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccc
Q 016730 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (384)
Q Consensus 259 CSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~E 319 (384)
+ .+. . ....+..+.+.+ +|+|.++++........
T Consensus 129 ~------------~~~-~----------~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~ 162 (257)
T COG0500 129 L------------HLL-P----------PAKALRELLRVL----KPGGRLVLSDLLRDGLL 162 (257)
T ss_pred h------------hcC-C----------HHHHHHHHHHhc----CCCcEEEEEeccCCCCc
Confidence 1 000 0 234566666665 99999999888765543
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.23 E-value=0.13 Score=47.64 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=94.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCcccccCCCCCCEEEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+.|.++.|+||--|....++.+.-. ...++|.|+++.-++.+.+|+++.++. .+.+..+|+.... ..+..+|.|..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l--~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL--ELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc--CccCCcCEEEE
Confidence 4577799999999999988777543 368999999999999999999999985 4778888885432 22347998876
Q ss_pred cCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEE
Q 016730 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (384)
Q Consensus 256 DaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l 335 (384)
.|.| ..+-++||+...+.+ +.--++| +.|.-|+..+...|..+++++
T Consensus 92 ----AGMG--------------------G~lI~~ILee~~~~l----~~~~rlI-----LQPn~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 92 ----AGMG--------------------GTLIREILEEGKEKL----KGVERLI-----LQPNIHTYELREWLSANSYEI 138 (226)
T ss_pred ----eCCc--------------------HHHHHHHHHHhhhhh----cCcceEE-----ECCCCCHHHHHHHHHhCCcee
Confidence 2444 234467888888876 4334666 377788999998888888776
Q ss_pred ee
Q 016730 336 VP 337 (384)
Q Consensus 336 ~~ 337 (384)
..
T Consensus 139 ~~ 140 (226)
T COG2384 139 KA 140 (226)
T ss_pred ee
Confidence 54
No 261
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.20 E-value=0.052 Score=51.69 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------------------- 228 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~---------------------------- 228 (384)
..|+++||+||||--.- +....+--..|+..|..+.-.+.+++-++.-|.
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35889999999994321 222222234799999998877766554432121
Q ss_pred ceE-EEEecCCCCcccccC----CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC
Q 016730 229 TNT-IVCNYDGNELPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (384)
Q Consensus 229 ~~v-~~~~~D~~~~~~~~~----~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk 303 (384)
..| .++..|.+..+.... ..+||.|+.= .-.+.+..-....++.+++..++| |
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~------------------fcLE~a~~d~~~y~~al~ni~~lL----k 190 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS------------------FCLESACKDLDEYRRALRNISSLL----K 190 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE------------------SSHHHH-SSHHHHHHHHHHHHTTE----E
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhh------------------HHHHHHcCCHHHHHHHHHHHHHHc----C
Confidence 012 356678776544322 1358988751 122222222234566778888876 9
Q ss_pred CCcEEEEEecc------CC------ccccHHHHHHHHhcCCCEEeec
Q 016730 304 SGGYIVYSTCS------IM------VTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 304 pGG~lvYsTCS------i~------~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
|||.|+....- +- .-=|++.|...+++.|+.++..
T Consensus 191 pGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 191 PGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred CCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 99999986321 11 1247889999999988887765
No 262
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.04 E-value=0.029 Score=54.03 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=38.1
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~ 226 (384)
.+|||+|||||.-+..+.+..+....++++|.|+.+++..+..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999866666666665568999999999999888766544
No 263
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.02 E-value=0.057 Score=49.84 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.+|.+||.+|-|.|-..+.+.+.-+ ..=+-+|.++.-+++++.+.-+- -.||.+..+-=.+....+.++.||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEee
Confidence 5688999999999998887766533 23455799999999888764321 24677665432222222345779999998
Q ss_pred CCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccH
Q 016730 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (384)
Q Consensus 257 aPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe 321 (384)
.= ...-+++ +.+-+++.++| ||+|.+-| |-.+..-|.
T Consensus 177 Ty---------------~e~yEdl-------~~~hqh~~rLL----kP~gv~Sy--fNg~~~~~~ 213 (271)
T KOG1709|consen 177 TY---------------SELYEDL-------RHFHQHVVRLL----KPEGVFSY--FNGLGADNL 213 (271)
T ss_pred ch---------------hhHHHHH-------HHHHHHHhhhc----CCCceEEE--ecCcccchh
Confidence 52 1122333 33445788875 99998777 556655554
No 264
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=95.94 E-value=0.0037 Score=57.49 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=65.3
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-----
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----- 244 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~----- 244 (384)
+...|.|.+|...+||.-|.||.|..|.+.-+. .+++|.|.+|-.-+.+......+=-..+..+.+.+..++..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~se-~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHSE-LKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCcH-hhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 456788999999999999999999999998654 68999999998877776665322111111111222222111
Q ss_pred cCCCCCCEEEEcCCCCCCCc
Q 016730 245 LGLNTVDRVLLDAPCSGTGV 264 (384)
Q Consensus 245 ~~~~~fD~VllDaPCSg~G~ 264 (384)
..+..||-||+|--||+.-+
T Consensus 114 l~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred CCcCCcceEEeecCcccccc
Confidence 12368999999999998754
No 265
>PHA01634 hypothetical protein
Probab=95.92 E-value=0.043 Score=46.53 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.|.+|+|+||+-|..+++.+-. ++..|+|++.+++..+..++|++.+.+-.-.+... ..+.. .+.||...+|.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~~--Y~~~Di~~iDC 100 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNGE--YEDVDIFVMDC 100 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---ccccc--CCCcceEEEEc
Confidence 4789999999999988776543 55799999999999999999998764411111111 22222 27899999983
No 266
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.91 E-value=0.058 Score=51.49 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=71.1
Q ss_pred cccccceEEEeCCcCcchhhh-cCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 153 PEYMAGFYMLQSASSFLPVMA-LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 153 ~~~~~G~~~~Qd~ss~l~~~~-L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
..|.+|+...--.-|..+.+. -+--.|..|+=+| ---.|...+++.+-..+|..+|+++.-++-..+-++.+|++|+
T Consensus 126 ~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~i 203 (354)
T COG1568 126 HQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNI 203 (354)
T ss_pred hhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccch
Confidence 356666655544333322211 1223577788777 3334443444443345789999999999999999999999999
Q ss_pred EEEecCCCCc-ccccCCCCCCEEEEcCCC
Q 016730 232 IVCNYDGNEL-PKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 232 ~~~~~D~~~~-~~~~~~~~fD~VllDaPC 259 (384)
..+..|.+++ |..+ .++||+++.|||-
T Consensus 204 e~~~~Dlr~plpe~~-~~kFDvfiTDPpe 231 (354)
T COG1568 204 EAFVFDLRNPLPEDL-KRKFDVFITDPPE 231 (354)
T ss_pred hheeehhcccChHHH-HhhCCeeecCchh
Confidence 9999999986 3333 3799999999994
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.75 E-value=0.084 Score=52.20 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=49.7
Q ss_pred CCCCCceEEEeccC-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEE
Q 016730 175 APQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 175 ~~~~g~~VLD~cag-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
+.+||++|+=.|+| -|..+..+|..+. .+|+|+|+++++++.++ ++|.+.+.... |........ +.||.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~-~~~~~~~~~--~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSS-DSDALEAVK--EIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcEEEEcC-CchhhHHhH--hhCcEE
Confidence 57899999988887 2234445555554 69999999999987765 57776544433 443333322 349999
Q ss_pred EEcCC
Q 016730 254 LLDAP 258 (384)
Q Consensus 254 llDaP 258 (384)
+.-+|
T Consensus 234 i~tv~ 238 (339)
T COG1064 234 IDTVG 238 (339)
T ss_pred EECCC
Confidence 87544
No 268
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.69 E-value=0.068 Score=52.62 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=75.4
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPC 259 (384)
...+|+|+|.|..+-++....+ .|-+++.+..-+-....++. -|+ ..+-+|...- . .+-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~gV---~~v~gdmfq~---~--P~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PGV---EHVAGDMFQD---T--PKGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CCc---ceeccccccc---C--CCcCeEEE----
Confidence 7899999999999999988665 38888888888888877776 664 4445666542 1 34578886
Q ss_pred CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 260 Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
..+...|+.++. .+||+++++.| +|||.++..-+-+.
T Consensus 243 ---------kWiLhdwtDedc-------vkiLknC~~sL----~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 243 ---------KWILHDWTDEDC-------VKILKNCKKSL----PPGGKIIVVENVTP 279 (342)
T ss_pred ---------EeecccCChHHH-------HHHHHHHHHhC----CCCCEEEEEeccCC
Confidence 223336777776 57899999996 99999999887443
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.62 E-value=0.017 Score=53.15 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred ceEEEeCCcCcchhhhc--CCCCCceEEEeccCCChHHHHHHHHc---cCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 158 GFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 158 G~~~~Qd~ss~l~~~~L--~~~~g~~VLD~cagpGgkt~~la~~~---~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
|.-.+|.+.-+++-..| ..+| +.|+++|.+-||-....|.++ ++.++|+++|++.+...+..-..+-+. ..|+
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~-~rI~ 88 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMS-PRIT 88 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcccc-CceE
Confidence 55566666555443332 3343 589999999999888777644 456899999997554433322222232 5688
Q ss_pred EEecCCCCccccc------CCCCCCEEEEcCC
Q 016730 233 VCNYDGNELPKVL------GLNTVDRVLLDAP 258 (384)
Q Consensus 233 ~~~~D~~~~~~~~------~~~~fD~VllDaP 258 (384)
++.+|..+..... .......|++|+-
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 9999988753221 1234568888874
No 270
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.42 E-value=0.28 Score=44.72 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=37.0
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCH
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~ 213 (384)
..+..+++|++|+|+--|.|.+|..++..++.+|.|+++=-.+
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 3445688999999999999999999999999999999875543
No 271
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=0.026 Score=55.43 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=56.5
Q ss_pred EEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCCCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg 261 (384)
|+|++||.||.+.-+-+. +--.+.|+|+++..++..+.|... .+...|..++.... ...+|+++.-+||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~-~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSD-IPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhh-CCCcCEEEecCCCcc
Confidence 689999999998776553 223578899999999999888531 33356776653211 146899999999988
Q ss_pred CCcCCCC
Q 016730 262 TGVISKD 268 (384)
Q Consensus 262 ~G~~~r~ 268 (384)
.-...+.
T Consensus 72 fS~ag~~ 78 (315)
T TIGR00675 72 FSIAGKR 78 (315)
T ss_pred cchhccc
Confidence 7665543
No 272
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.29 E-value=0.008 Score=57.78 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCCCCEEEEc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~fD~VllD 256 (384)
.|+.|+||.||-|.+|+-..-.. +...|+|+|.++..++.+++|++.+++.. ..++.+|-+.... ....|+|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchheeec
Confidence 47999999999999998332222 34689999999999999999999987753 4455677776532 2678999873
No 273
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.27 E-value=0.13 Score=50.96 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH--HHcCC-----ceEEEEecCCCCcccccCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL--HRMGV-----TNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~--~r~g~-----~~v~~~~~D~~~~~~~~~~~~ 249 (384)
+.-++||=+|.|-|--.-.+... ++-++|+-+|.||++++..+++. ...+- ..+.+++.|+..+-..- ...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-ccc
Confidence 34578999999999654444432 44579999999999999998543 33322 35888899998764322 368
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc-CCccccHHHHHHHH
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS-IMVTENEAVIDYAL 328 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS-i~~~ENe~vv~~~l 328 (384)
||.|++|-|=-. +|.+-...+ .++...+.+. |+++|.+|.-.-| ++.-+-=--|..-+
T Consensus 366 fD~vIVDl~DP~------tps~~rlYS-----------~eFY~ll~~~----l~e~Gl~VvQags~y~tp~vfw~i~aTi 424 (508)
T COG4262 366 FDVVIVDLPDPS------TPSIGRLYS-----------VEFYRLLSRH----LAETGLMVVQAGSPYFTPRVFWRIDATI 424 (508)
T ss_pred ccEEEEeCCCCC------Ccchhhhhh-----------HHHHHHHHHh----cCcCceEEEecCCCccCCceeeeehhHH
Confidence 999999988211 122211111 1233333344 4999998854333 33333223334445
Q ss_pred hcCCCEEee
Q 016730 329 KKRDVKLVP 337 (384)
Q Consensus 329 ~~~~~~l~~ 337 (384)
++.++...|
T Consensus 425 k~AG~~~~P 433 (508)
T COG4262 425 KSAGYRVWP 433 (508)
T ss_pred HhCcceeee
Confidence 666766655
No 274
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.037 Score=54.61 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=59.0
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-cCCCCCCEEEEcCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLDAP 258 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~fD~VllDaP 258 (384)
.+++|+|||-||...-+.+.- --.+.|+|+++..++..+.|... ..+...|...+... .....+|+|+--||
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 479999999999886655542 24789999999999999988753 33445565544221 11117999999999
Q ss_pred CCCCCcCCCC
Q 016730 259 CSGTGVISKD 268 (384)
Q Consensus 259 CSg~G~~~r~ 268 (384)
|-+.-+..++
T Consensus 77 CQ~FS~aG~r 86 (328)
T COG0270 77 CQDFSIAGKR 86 (328)
T ss_pred CcchhhcCcc
Confidence 9888776554
No 275
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.07 E-value=0.011 Score=59.30 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCcc
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELP 242 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~--~v~~~~~D~~~~~ 242 (384)
.++|+.|-|+|||-|-.++-++.. ...|+|+|.+++.++-++.|++...+. ++.+.+.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999988765553 489999999999999999999887774 5889999998764
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=94.85 E-value=0.06 Score=52.01 Aligned_cols=46 Identities=15% Similarity=0.025 Sum_probs=37.2
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
.+|+.|||-++|+|.. +..|..++ -.-+++|++++-++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT-~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTT-GAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHH-HHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999999974 34455543 3799999999999999998753
No 277
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.54 E-value=0.097 Score=52.07 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=65.0
Q ss_pred CCCCceEEEeccCCChH-HHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC-CC-CcccccCCCCCCE
Q 016730 176 PQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GN-ELPKVLGLNTVDR 252 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgk-t~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D-~~-~~~~~~~~~~fD~ 252 (384)
.+++.+|+=+||||=|. +..+++.++ ...|+++|.++.|++.+++. .|...+.....+ .. .......+..||.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~---~g~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEA---GGADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHh---CCCeEeecCccccHHHHHHHHhCCCCCCE
Confidence 34555899999999554 455555554 57999999999999998763 233322221111 10 0111122247999
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
|+- |||+. ..+..+++++ ++||++++..-.
T Consensus 242 vie---~~G~~-------------------------~~~~~ai~~~----r~gG~v~~vGv~ 271 (350)
T COG1063 242 VIE---AVGSP-------------------------PALDQALEAL----RPGGTVVVVGVY 271 (350)
T ss_pred EEE---CCCCH-------------------------HHHHHHHHHh----cCCCEEEEEecc
Confidence 986 76632 1567788886 999999986543
No 278
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.53 E-value=0.13 Score=53.21 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=56.2
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------------- 244 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------------- 244 (384)
.-+++|++||.||.+.-+-+. + --.|.++|+++...+..+.|... .....+.+.|...+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999988776443 2 23689999999999999888521 11223334555544210
Q ss_pred -cCCCCCCEEEEcCCCCCCCcCC
Q 016730 245 -LGLNTVDRVLLDAPCSGTGVIS 266 (384)
Q Consensus 245 -~~~~~fD~VllDaPCSg~G~~~ 266 (384)
.....+|+++.-|||.+.-+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0113689999999997775543
No 279
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.38 E-value=0.08 Score=48.20 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=30.8
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHH
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTA 221 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~ 221 (384)
-.+|+.|||.+||+|. |++.|..++ -+-+++|+++.-++.+++
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3579999999999997 444555553 369999999999888763
No 280
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.38 E-value=0.15 Score=55.05 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=80.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-------C----CceEEEEeCCH---HHHHHHHH----------HHH-H-----cC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-------N----TGLIYANEMKA---SRLKSLTA----------NLH-R-----MG 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-------~----~g~V~a~D~~~---~rl~~l~~----------n~~-r-----~g 227 (384)
+.-+|+|+|-|.|.-++...+... + .-+++++|..+ +.+..+-. .+. . .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999998877666551 1 23789999765 22222211 111 1 13
Q ss_pred Cc---------eEEEEecCCCCcccccCCCCCCEEEEcC--CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHH
Q 016730 228 VT---------NTIVCNYDGNELPKVLGLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296 (384)
Q Consensus 228 ~~---------~v~~~~~D~~~~~~~~~~~~fD~VllDa--PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~ 296 (384)
+. +..+..+|++.....+. ..||.|++|+ | .++|++ |+. +++....+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP-------~~np~~---W~~-----------~~~~~l~~ 194 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAP-------AKNPDM---WSP-----------NLFNALAR 194 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCC-------ccChhh---ccH-----------HHHHHHHH
Confidence 31 23455678776433222 4699999995 5 567876 333 45666666
Q ss_pred chhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 297 MVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 297 ~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
++ +|||+++-.|| -..|..-|...||++...
T Consensus 195 ~~----~~~~~~~t~t~-------a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 195 LA----RPGATLATFTS-------AGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred Hh----CCCCEEEEeeh-------HHHHHHHHHHcCCeeeec
Confidence 64 99999984443 356777788888877653
No 281
>PRK11524 putative methyltransferase; Provisional
Probab=94.29 E-value=0.083 Score=51.00 Aligned_cols=75 Identities=15% Similarity=0.013 Sum_probs=44.9
Q ss_pred ceEEEEecCCCCcccccCCCCCCEEEEcCCCCC-CCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcE
Q 016730 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (384)
Q Consensus 229 ~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg-~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~ 307 (384)
.+..++++|+......+.+++||.|++|||.-. .+.....+ . +.. .+....-.+++..+.++| ||||.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~--~--~~~---~~~~~~l~~~l~~~~rvL----K~~G~ 75 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE--A--WKE---DLFIDWLYEWIDECHRVL----KKQGT 75 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc--c--ccH---HHHHHHHHHHHHHHHHHh----CCCcE
Confidence 345677899887654455678999999999832 11111111 1 111 122233456777777765 99999
Q ss_pred EEEEeccC
Q 016730 308 IVYSTCSI 315 (384)
Q Consensus 308 lvYsTCSi 315 (384)
++.. |+.
T Consensus 76 i~i~-~~~ 82 (284)
T PRK11524 76 MYIM-NST 82 (284)
T ss_pred EEEE-cCc
Confidence 9764 443
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.98 E-value=0.086 Score=54.28 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=56.4
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEE---eCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYAN---EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~---D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDa 257 (384)
.+||+|||.|+++.+|.++ + ..++++ |..+...+.+- + -|+.....+.+ ...+| +....||.|=
T Consensus 120 ~~LDvGcG~aSF~a~l~~r--~-V~t~s~a~~d~~~~qvqfal---e-RGvpa~~~~~~-s~rLP--fp~~~fDmvH--- 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER--N-VTTMSFAPNDEHEAQVQFAL---E-RGVPAMIGVLG-SQRLP--FPSNAFDMVH--- 186 (506)
T ss_pred EEEeccceeehhHHHHhhC--C-ceEEEcccccCCchhhhhhh---h-cCcchhhhhhc-ccccc--CCccchhhhh---
Confidence 5999999999999888775 2 222222 33333333332 2 25543322111 23344 2347899885
Q ss_pred CCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
||...+ .| ...+- -+|-..-++ |+|||++|+|.--+.
T Consensus 187 -csrc~i-------~W--~~~~g--------~~l~evdRv----LRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 -CSRCLI-------PW--HPNDG--------FLLFEVDRV----LRPGGYFVLSGPPVY 223 (506)
T ss_pred -cccccc-------cc--hhccc--------ceeehhhhh----hccCceEEecCCccc
Confidence 454443 12 22211 134444444 599999999988777
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.61 E-value=0.93 Score=44.49 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=57.9
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~~fD 251 (384)
...+|++||=.|| |+.+....++.... ..|+++|.+++|++.++ ++|.+.+. ..+-.++.... ..+.||
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~vi--~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADKLV--NPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcEEe--cCCcccHHHHhccCCCCC
Confidence 3457999997765 55555444433322 36999999999987764 47875432 21111111111 113589
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.|+ | |+|.. ..+..+++++ ++||+++....
T Consensus 238 ~vi-d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSF-E--VSGHP-------------------------SSINTCLEVT----RAKGVMVQVGM 267 (343)
T ss_pred EEE-E--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEcc
Confidence 886 4 44431 1345667775 99999987654
No 284
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=6.9 Score=37.17 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=92.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHH------HHHHHHH---HHHcCCceEEEEecCCCCccc--cc
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASR------LKSLTAN---LHRMGVTNTIVCNYDGNELPK--VL 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~r------l~~l~~n---~~r~g~~~v~~~~~D~~~~~~--~~ 245 (384)
...+||-+|=|-=..+..|+...+ ..+.|+|...+.+- ...++.| ++++|+. ++...|++.+.. .+
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEecccc
Confidence 456788888888888888888766 45666666555433 2223344 5677765 233345554432 34
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCC-CCcEEEEEeccCCccccHHHH
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK-SGGYIVYSTCSIMVTENEAVI 324 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lk-pGG~lvYsTCSi~~~ENe~vv 324 (384)
..++||.|+.+=|-+|.|.-.+ -+ ..-+.....+-+.+|..|-.+| + ..|.|..+--+..| =|.-.+
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~~e-~d------~~~i~~~qkL~rgFle~akemL----~~edGeI~itlk~t~P-~~~W~i 201 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIKFE-QD------RNIIPLHQKLFRGFLESAKEML----KDEDGEIHITLKTTYP-FNPWNI 201 (282)
T ss_pred cccccceEEEcCCCCCCCcccc-cc------hHHHHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeccCCC-Cchhhh
Confidence 4589999999999999997521 11 1222245667778888888886 6 66877665333333 244677
Q ss_pred HHHHhcCCCEEee
Q 016730 325 DYALKKRDVKLVP 337 (384)
Q Consensus 325 ~~~l~~~~~~l~~ 337 (384)
+.+.+..+..+..
T Consensus 202 k~Lak~~gl~L~~ 214 (282)
T KOG4174|consen 202 KFLAKEFGLTLLE 214 (282)
T ss_pred hHhhhhccccchh
Confidence 7777777877654
No 285
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.42 E-value=0.45 Score=42.19 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=66.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc---ccccCCCCCCEE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL---PKVLGLNTVDRV 253 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~---~~~~~~~~fD~V 253 (384)
.++.+|+=+||=+-... +.........++-.|.|.+ .+.+|-+ .++..|.... +..+ .++||+|
T Consensus 24 ~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~R--------F~~~~~~--~F~fyD~~~p~~~~~~l-~~~~d~v 90 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRR--------FEQFGGD--EFVFYDYNEPEELPEEL-KGKFDVV 90 (162)
T ss_pred CCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecch--------HHhcCCc--ceEECCCCChhhhhhhc-CCCceEE
Confidence 35678887776554433 3332233457888998863 2333433 4556777654 3333 3689999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHH
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l 328 (384)
++|||- .+.+ .+.+ ...+++.| +|+++.++.+ ++++||+.+...+
T Consensus 91 v~DPPF---------------l~~e-------c~~k-~a~ti~~L---~k~~~kii~~----Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 91 VIDPPF---------------LSEE-------CLTK-TAETIRLL---LKPGGKIILC----TGEEMEELIKKLL 135 (162)
T ss_pred EECCCC---------------CCHH-------HHHH-HHHHHHHH---hCccceEEEe----cHHHHHHHHHHHh
Confidence 999993 1211 1222 23445555 5899999975 4688999998887
No 286
>PRK13699 putative methylase; Provisional
Probab=93.34 E-value=0.33 Score=45.40 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=51.2
Q ss_pred EEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 232 ~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+.++|+.+....++++++|.|+.|||+- .|.-.+... .. ... .......+.+.++.++| ||||.++ +
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~-~~--~~~---~~~ew~~~~l~E~~RVL----Kpgg~l~-i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR-TI--AGD---KTDEWLQPACNEMYRVL----KKDALMV-S 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc-cc--ccc---cHHHHHHHHHHHHHHHc----CCCCEEE-E
Confidence 46678887765556678999999999984 222111100 00 001 11223345677777775 9988764 4
Q ss_pred eccCCccccHHHHHHHHhcCCCEEee
Q 016730 312 TCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 312 TCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
.|+... ...+..++++.++.+..
T Consensus 71 f~~~~~---~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 71 FYGWNR---VDRFMAAWKNAGFSVVG 93 (227)
T ss_pred Eecccc---HHHHHHHHHHCCCEEee
Confidence 566532 23333445666776654
No 287
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.28 E-value=0.3 Score=46.39 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=68.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEEcCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~VllDaP 258 (384)
...|-|+|||-+-.+ +. ....|.++|+.+ -|-.++..|.++.|. .+++.|++++
T Consensus 181 ~~vIaD~GCGEakiA----~~--~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl--~d~svDvaV~--- 234 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIA----SS--ERHKVHSFDLVA---------------VNERVIACDMRNVPL--EDESVDVAVF--- 234 (325)
T ss_pred ceEEEecccchhhhh----hc--cccceeeeeeec---------------CCCceeeccccCCcC--ccCcccEEEe---
Confidence 457899999998643 22 234799999653 234556788888773 4589999987
Q ss_pred C-CCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcCCCEEee
Q 016730 259 C-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVP 337 (384)
Q Consensus 259 C-Sg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~~~~l~~ 337 (384)
| |-.|+ .-..++..|.+.| |+||.+..+.-+--- +.-......+...||.+..
T Consensus 235 CLSLMgt---------------------n~~df~kEa~RiL----k~gG~l~IAEv~SRf-~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 235 CLSLMGT---------------------NLADFIKEANRIL----KPGGLLYIAEVKSRF-SDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred eHhhhcc---------------------cHHHHHHHHHHHh----ccCceEEEEehhhhc-ccHHHHHHHHHHcCCeeee
Confidence 5 33343 1245788888886 999998766433211 2212233445566777665
Q ss_pred c
Q 016730 338 C 338 (384)
Q Consensus 338 ~ 338 (384)
.
T Consensus 289 ~ 289 (325)
T KOG3045|consen 289 K 289 (325)
T ss_pred h
Confidence 4
No 288
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.15 E-value=0.71 Score=42.68 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=55.4
Q ss_pred CceEEEeccCCCh--HHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCC-CcccccCCCCCCEE
Q 016730 179 KERVIDMAAAPGG--KTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGN-ELPKVLGLNTVDRV 253 (384)
Q Consensus 179 g~~VLD~cagpGg--kt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~-~~~~~~~~~~fD~V 253 (384)
-..++++||+-|. .|+.|+..... .|+++++-.++..+...++.+..+|+.+ ++|+.++.. .+...+ ...|.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCEE
Confidence 4568888766443 45555554433 4799999999998889999999999865 587777753 333233 679999
Q ss_pred EEcC
Q 016730 254 LLDA 257 (384)
Q Consensus 254 llDa 257 (384)
++|.
T Consensus 120 vVDc 123 (218)
T PF07279_consen 120 VVDC 123 (218)
T ss_pred EEeC
Confidence 9995
No 289
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.02 E-value=0.097 Score=43.57 Aligned_cols=87 Identities=23% Similarity=0.387 Sum_probs=58.6
Q ss_pred CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCCCCCCEEEEcCCCCCCCc
Q 016730 189 PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNTVDRVLLDAPCSGTGV 264 (384)
Q Consensus 189 pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~~~fD~VllDaPCSg~G~ 264 (384)
-|..+..+|..++ .+|+++|.++.|++.++ ++|.+.+ +..+..++. ....+..+|.|+- |+|.+
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~- 69 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHV--IDYSDDDFVEQIRELTGGRGVDVVID---CVGSG- 69 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEE--EETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH-
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccccc--ccccccccccccccccccccceEEEE---ecCcH-
Confidence 4677788888876 79999999999987764 5785533 334333221 2223357999976 55543
Q ss_pred CCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 265 ~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
..+..+++++ ++||+++.....-
T Consensus 70 ------------------------~~~~~~~~~l----~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 ------------------------DTLQEAIKLL----RPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------HHHHHHHHHE----EEEEEEEEESSTS
T ss_pred ------------------------HHHHHHHHHh----ccCCEEEEEEccC
Confidence 2567788886 9999998765443
No 290
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.90 E-value=1.7 Score=39.90 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
++.+|| +..|.|+.+.+++..+.. ...|++++.++..+..+...++..+. ++.+...|..+.... + ..+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777 445678888888876543 34788899998888877776665543 567778888764321 1 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
++|.|+..+
T Consensus 84 ~id~vi~~a 92 (250)
T PRK12939 84 GLDGLVNNA 92 (250)
T ss_pred CCCEEEECC
Confidence 689998855
No 291
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=92.85 E-value=0.037 Score=50.69 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=32.3
Q ss_pred CceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHH
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~ 220 (384)
..++||+|||-|-.|.+++-... +|+|.|.|..+..+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLK 151 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHh
Confidence 46899999999999998887764 5999999988766654
No 292
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.76 E-value=0.86 Score=44.82 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=56.2
Q ss_pred CCCCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD 251 (384)
.+++|++||=.|| |+.++. ++..+.+...|+++|.+++|++.+++ ++.. ... + .... ...||
T Consensus 160 ~~~~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~--~~~--~--~~~~---~~g~d 224 (341)
T cd08237 160 AHKDRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET--YLI--D--DIPE---DLAVD 224 (341)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce--eeh--h--hhhh---ccCCc
Confidence 3578999998886 454443 34432223579999999999988764 3432 111 1 1111 12589
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
+|+ | |+|... + ...+..+++++ ++||+++..-.
T Consensus 225 ~vi-D--~~G~~~-----------~-----------~~~~~~~~~~l----~~~G~iv~~G~ 257 (341)
T cd08237 225 HAF-E--CVGGRG-----------S-----------QSAINQIIDYI----RPQGTIGLMGV 257 (341)
T ss_pred EEE-E--CCCCCc-----------c-----------HHHHHHHHHhC----cCCcEEEEEee
Confidence 886 4 444210 0 12456777875 99999986554
No 293
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.67 E-value=0.39 Score=48.12 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=36.8
Q ss_pred hcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHH
Q 016730 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n 222 (384)
...+++|++||..++|+ |..+..+++.++. +.|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 34567899999998766 5566677776642 4699999999998887764
No 294
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.00 E-value=2 Score=45.04 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=69.0
Q ss_pred HHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc---cCCCccccccEEEecCCCCCCCCcccccceEEEeCCcCcchh-
Q 016730 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL---DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV- 171 (384)
Q Consensus 96 ~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~ss~l~~- 171 (384)
+.+....-+.-.++... -.++.+.|.++|+.+ +.++.++.. +..++-..-.-..||-.++..+..+..
T Consensus 81 ~~l~~g~~li~~l~p~~--~~~l~~~l~~~~it~ia~e~vpr~sra------q~~d~lssma~IAGy~Av~~aa~~~~~~ 152 (509)
T PRK09424 81 ALLREGATLVSFIWPAQ--NPELLEKLAARGVTVLAMDAVPRISRA------QSLDALSSMANIAGYRAVIEAAHEFGRF 152 (509)
T ss_pred HhcCCCCEEEEEeCccc--CHHHHHHHHHcCCEEEEeecccccccC------CCcccccchhhhhHHHHHHHHHHHhccc
Confidence 33444444555566532 367899999998864 222112211 111222222223444444433322211
Q ss_pred -----hhcCCCCCceEEEeccCCChHHH-HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 172 -----MALAPQEKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 172 -----~~L~~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
-++...++++|+=+|||+=|... ..|..++ ..|+++|.+++|++.+++ +|.+.+
T Consensus 153 ~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v 212 (509)
T PRK09424 153 FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFL 212 (509)
T ss_pred CCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEE
Confidence 12335689999999999976544 4555554 379999999999887654 687643
No 295
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.99 E-value=0.3 Score=46.41 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=51.2
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
..+|+.-+|+||+|||.|-.+-. ..-.|+|+|.-+ +.+++...| .|.....|+..+... ..+.|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk---r~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P~--r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK---RNMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRPT--RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhh---cceEEEEeccch-----hhhhhhccc--ceeeeeccCcccccC--CCCCceEEe
Confidence 45899999999999999976554 346899999654 233443333 467778899887542 368999999
Q ss_pred cC
Q 016730 256 DA 257 (384)
Q Consensus 256 Da 257 (384)
|.
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 85
No 296
>PRK13699 putative methylase; Provisional
Probab=91.81 E-value=0.43 Score=44.64 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=37.9
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g 227 (384)
-.+|+.|||.+||+|... ..|..++ -..+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~-~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTC-VAALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHH-HHHHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 358999999999999743 3344433 468999999999999988887643
No 297
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.63 E-value=3 Score=38.48 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|+|+.+.+++..+... ..|+.++.++..++.+...++..+. ++.++..|..+.... . ..+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 4556788899888865433 4899999999988888777766554 466677888764321 0 1146
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998654
No 298
>PRK09186 flagellin modification protein A; Provisional
Probab=91.60 E-value=3.1 Score=38.42 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.| |+|+.+.+++..+... ..|+.++.+++.++.+...+.. .+-..+.++..|..+.... . ..
T Consensus 3 ~~k~vlItG-as~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITG-AGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 355676555 4677888888766433 4899999998888777666643 2334455667788764221 1 11
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
+..|.|+..+
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 4589999876
No 299
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.44 E-value=1.6 Score=42.71 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred cCCCCCceEEEeccCCCh-HHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGg-kt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
..+++|++||=.|+|+-| .+..+|..++ ..|++++.++++++.+ +++|.+.+.. . .... .+.+|.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~vi~--~--~~~~----~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAASAGG--A--YDTP----PEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCceecc--c--cccC----cccceE
Confidence 456789999988864333 2233444432 3699999999987654 5588764321 1 1111 145887
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
++. |++.| ..+..+++.+ ++||+++..
T Consensus 227 ~i~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~ 253 (329)
T TIGR02822 227 AIL---FAPAG-------------------------GLVPPALEAL----DRGGVLAVA 253 (329)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhh----CCCcEEEEE
Confidence 654 22221 1456677776 999998754
No 300
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.31 E-value=5.2 Score=37.16 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------c-CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~-~~~ 248 (384)
+|.+||=.| |.|+.+.++++.+-. ...|+.++.+..+++.+...+...+. ++.++..|..+.... . ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466777666 677888888876643 34899999999888887777766553 456678888864322 0 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHc-hhccCCCCcEEEEEecc
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM-VDANSKSGGYIVYSTCS 314 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~-L~~~lkpGG~lvYsTCS 314 (384)
.+|.|+..+..+..+.....+.-.| ...+.....-...+++.+.+. +. -++.|.+|+.+.+
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~l~--~~~~~~~v~~sS~ 150 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAW---DKVMNLNVRGLFLLSQAVAKRSMI--PRGYGRIINVASV 150 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHH---HHHHhHHhHHHHHHHHHHHHHHHH--hcCCeEEEEECCh
Confidence 6899998765433222222221111 111222233344455555443 21 0344677776653
No 301
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.31 E-value=1.4 Score=43.37 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=54.1
Q ss_pred CCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeC---CHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCC
Q 016730 176 PQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~---~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 249 (384)
+++|++||=.|+ |+.+. .++..++ ..|++++. +++|++.+ +++|.+.+.....|... ......
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~---~~~~~~ 238 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAE---VKLVGE 238 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhh---hhhcCC
Confidence 468999998876 45444 4444443 37999987 67777655 45787532111111111 011246
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
||.|+- |+|.. ..+..+++.+ ++||+++..-
T Consensus 239 ~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~G 269 (355)
T cd08230 239 FDLIIE---ATGVP-------------------------PLAFEALPAL----APNGVVILFG 269 (355)
T ss_pred CCEEEE---CcCCH-------------------------HHHHHHHHHc----cCCcEEEEEe
Confidence 898864 44431 1356677775 9999887543
No 302
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.30 E-value=3 Score=38.45 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc---------ccc-
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---------KVL- 245 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~---------~~~- 245 (384)
.++.+||=.| |.|+.+.+++..+... ..|++++.+...+..+.+.+...+...+.+...|..... ...
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 4677788666 5677777777655433 489999999988888877777766555666666664211 000
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
..+.+|.|+..+.
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1147899998764
No 303
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.22 E-value=0.31 Score=45.56 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEe-cCCCCc-cccc-CCCCCC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCN-YDGNEL-PKVL-GLNTVD 251 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~-g~~~-v~~~~-~D~~~~-~~~~-~~~~fD 251 (384)
.++-++||+|.|---.--.+...+-+ -..++.|+|+..+..++.++..+ ++++ +.+.. .|...+ +... ..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 45678999988765433333333222 37899999999999999999877 6654 43332 232222 2222 247899
Q ss_pred EEEEcCCCCC
Q 016730 252 RVLLDAPCSG 261 (384)
Q Consensus 252 ~VllDaPCSg 261 (384)
.++|+||.-+
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999999533
No 304
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.11 E-value=0.99 Score=42.98 Aligned_cols=100 Identities=20% Similarity=0.134 Sum_probs=56.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~f 250 (384)
+...+|++||=.|+ |+.+..++++.+..| .|+++|.+++|++.++ .+|.+.+.-. .+. ...........+
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~-~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELAL----SFGATALAEP-EVLAERQGGLQNGRGV 188 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCcEecCc-hhhHHHHHHHhCCCCC
Confidence 34568999998765 555555444433222 4889999999887664 4676532211 111 001111122468
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
|.|+- |+|.. ..+..+++.+ ++||+++...
T Consensus 189 d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 218 (280)
T TIGR03366 189 DVALE---FSGAT-------------------------AAVRACLESL----DVGGTAVLAG 218 (280)
T ss_pred CEEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEec
Confidence 98863 44331 1356677775 9999988543
No 305
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.95 E-value=2.9 Score=38.13 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=50.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.+..||=.| |+|+.+.+++..+.. +..|++++.++.++..+.+.+... ..+.++..|..+.... + ...
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777666 577888888775533 348999999998887776665432 3466677887754211 1 113
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.+|.|+..+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689988754
No 306
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.78 E-value=1.6 Score=43.07 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=57.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~~ 248 (384)
.+++|++||=.|+ |+.+..+.++.+..| .|+++|.+++|++.++ ++|.+. +++....+. .....+.
T Consensus 173 ~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~~--~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGATH--TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCce--EEcCCCcCHHHHHHHHhCCC
Confidence 4678999998764 555554444333223 5999999999988774 467643 222211111 1111224
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.|+ | |+|.. ..+..+++.+ ++||++|..-
T Consensus 245 g~d~vi-d--~~g~~-------------------------~~~~~~~~~~----~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVI-D--AVGRP-------------------------ETYKQAFYAR----DLAGTVVLVG 276 (358)
T ss_pred CCCEEE-E--CCCCH-------------------------HHHHHHHHHh----ccCCEEEEEC
Confidence 689886 4 55431 1345566665 9999998654
No 307
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.59 E-value=7.8 Score=36.39 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c----CCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNT 249 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~----~~~~ 249 (384)
.|.++|=.|++ ||.+..+++.+- ....|+.++.+..+++.+.+.+....-.++.++..|..+.... . ..+.
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 36677755554 566777776543 3458999999999888887777554223466777888764211 1 1246
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
+|.++.++
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89888755
No 308
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=90.49 E-value=0.39 Score=48.12 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=61.9
Q ss_pred hhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccccCCCC
Q 016730 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNT 249 (384)
Q Consensus 171 ~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~ 249 (384)
+......++..++|++||-|+-+..++..- ...++++|.++-.+.+........++++ ..++..|....+ +++..
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fedn~ 178 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FEDNT 178 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CCccc
Confidence 333456678899999999999999888774 3579999999999988888777777765 233556666544 34578
Q ss_pred CCEEE-EcCCC
Q 016730 250 VDRVL-LDAPC 259 (384)
Q Consensus 250 fD~Vl-lDaPC 259 (384)
||.|- +|+-|
T Consensus 179 fd~v~~ld~~~ 189 (364)
T KOG1269|consen 179 FDGVRFLEVVC 189 (364)
T ss_pred cCcEEEEeecc
Confidence 99874 45444
No 309
>PLN02740 Alcohol dehydrogenase-like
Probab=90.28 E-value=1.8 Score=43.22 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..++++.+..| .|+++|.+++|++.++ .+|.+.
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45678999998864 666665555443333 6999999999988774 478754
No 310
>PRK06194 hypothetical protein; Provisional
Probab=90.28 E-value=5.2 Score=37.78 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=54.8
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|.|+.+.+++..+.. ...|+.+|.+...++.+.+.+...|. ++.++..|..+.... . ..+.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55777 555668888888875543 34899999998887777666655443 466778888764221 1 1146
Q ss_pred CCEEEEcCCCCCCC
Q 016730 250 VDRVLLDAPCSGTG 263 (384)
Q Consensus 250 fD~VllDaPCSg~G 263 (384)
+|.|+..+.-+..+
T Consensus 84 id~vi~~Ag~~~~~ 97 (287)
T PRK06194 84 VHLLFNNAGVGAGG 97 (287)
T ss_pred CCEEEECCCCCCCC
Confidence 89999977544433
No 311
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=0.42 Score=42.35 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=45.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHc---CCceEEEEecCCCCcccccCCCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM---GVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 254 (384)
.|.+||++|+|--+.+..|.+.......|.-.|-++..++.++.-..++ +++.+.+...+-..-.......+||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3678999998865554433333223467888899999888887666554 2333322222211111111235899998
Q ss_pred E
Q 016730 255 L 255 (384)
Q Consensus 255 l 255 (384)
+
T Consensus 109 a 109 (201)
T KOG3201|consen 109 A 109 (201)
T ss_pred e
Confidence 7
No 312
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.08 E-value=6 Score=36.04 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.|+ +|+.+.++++.+.. ...|++.+.++.++..+...+...+ ++.++..|..+..... ..+
T Consensus 4 ~~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3668887776 47788888876643 3489999999988877765554433 5677778887643110 014
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+..+.
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5798887653
No 313
>PRK06181 short chain dehydrogenase; Provisional
Probab=90.04 E-value=5.6 Score=36.99 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=49.9
Q ss_pred eEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD 251 (384)
+|| +..|+|+.+.+++..+ .....|++++.++...+.+.+.+...+. ++.+...|..+..... .....|
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 456 4456777888877644 3345899999998887777777766553 5667778887753211 113689
Q ss_pred EEEEcC
Q 016730 252 RVLLDA 257 (384)
Q Consensus 252 ~VllDa 257 (384)
.|+..+
T Consensus 81 ~vi~~a 86 (263)
T PRK06181 81 ILVNNA 86 (263)
T ss_pred EEEECC
Confidence 998854
No 314
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=89.94 E-value=0.94 Score=43.88 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=86.1
Q ss_pred CCCcccccceEEEeCCcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcC--
Q 016730 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-- 227 (384)
Q Consensus 150 ~~~~~~~~G~~~~Qd~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g-- 227 (384)
..+++..+|-| |+--+-++.- ....-++||=+|-|-||.--..+.. +.-+.+.-+|++..-++..++-+..+-
T Consensus 97 iqlte~de~~Y--qemi~~l~l~--s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g 171 (337)
T KOG1562|consen 97 IQLTERDEFAY--QEMIAHLALC--SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG 171 (337)
T ss_pred eeCCccccccc--eeeeeccccc--cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc
Confidence 34555655544 5433222211 2233468999999999965433333 233568889999998888877665543
Q ss_pred C--ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 228 V--TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 228 ~--~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
. +.+.+..+|+..+-+....++||+|++|-. +|. ....+..|+.......+.| |+|
T Consensus 172 y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dss---------dpv---------gpa~~lf~~~~~~~v~~aL----k~d 229 (337)
T KOG1562|consen 172 YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSS---------DPV---------GPACALFQKPYFGLVLDAL----KGD 229 (337)
T ss_pred cCCCceEEEeccHHHHHHHhccCCceEEEEecC---------Ccc---------chHHHHHHHHHHHHHHHhh----CCC
Confidence 2 357777889988766555589999999852 221 2234556777777777765 999
Q ss_pred cEEE
Q 016730 306 GYIV 309 (384)
Q Consensus 306 G~lv 309 (384)
|+++
T Consensus 230 gv~~ 233 (337)
T KOG1562|consen 230 GVVC 233 (337)
T ss_pred cEEE
Confidence 9985
No 315
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.78 E-value=6.6 Score=41.75 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=55.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC--------ceEEEEecCCCCcccc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV--------TNTIVCNYDGNELPKV 244 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~--------~~v~~~~~D~~~~~~~ 244 (384)
++.+.|.+||=.| |+|+.+.+++..+- .+..|++++.+..++..+.+.+..+++ .++.++.+|..+....
T Consensus 75 ~~~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 3445677777555 56888888887653 345899999999988877766654322 2477788898875322
Q ss_pred c-CCCCCCEEEEcC
Q 016730 245 L-GLNTVDRVLLDA 257 (384)
Q Consensus 245 ~-~~~~fD~VllDa 257 (384)
. ..+.+|.|++.+
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 1 115689998743
No 316
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.76 E-value=4.7 Score=37.38 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.++.+.++++.+.+.++..+ .++.++..|..+.... . ..+
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4677886775 4566777776553 33489999999998888888777666 3466677888764221 0 115
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
++|.++..+.
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899988764
No 317
>PRK05599 hypothetical protein; Provisional
Probab=89.72 E-value=6.3 Score=36.56 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCCE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD~ 252 (384)
.||=.|+ ++|.+..++..+.....|+.++.++++++.+.+.++..|-..+.++..|..+..... ..+..|.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 3554454 566777777766555689999999999998888887766545667788887742210 1257899
Q ss_pred EEEcC
Q 016730 253 VLLDA 257 (384)
Q Consensus 253 VllDa 257 (384)
++.++
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 98854
No 318
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.71 E-value=1.9 Score=42.31 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=34.6
Q ss_pred cCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+|+ |..+..+|..++ ..|+++|.+++|++.++ .+|.+.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~ 213 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGADL 213 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCce
Confidence 3567899999888744 333344555543 37999999999987664 467653
No 319
>PRK06949 short chain dehydrogenase; Provisional
Probab=89.61 E-value=6.7 Score=36.23 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |.|+.+.+++..+...| .|++++.++++++.+...+...+. ++.++..|..+..... ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467777666 67778888887664334 799999999998888777755443 4666777877542110 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 6899998664
No 320
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.60 E-value=2.2 Score=41.75 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC---cccccCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE---LPKVLGLN 248 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~---~~~~~~~~ 248 (384)
..++|++||=.++ |+.+.. +|..++ ...|++++.++++++.+ +.+|.+.+ +..+... +.....+.
T Consensus 157 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 157 QGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLALA----KSLGAMQT--FNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCceE--ecCcccCHHHHHHHhcCC
Confidence 4568899987754 555444 444443 23478999999988765 34676432 2222111 11112234
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.+++| |+|.. ..+..+++++ ++||+++..-
T Consensus 228 ~~d~~v~d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 260 (347)
T PRK10309 228 RFDQLILE--TAGVP-------------------------QTVELAIEIA----GPRAQLALVG 260 (347)
T ss_pred CCCeEEEE--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEc
Confidence 68866777 54431 2456677776 9999988653
No 321
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.55 E-value=8.8 Score=35.72 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
+|.+||=.|++.+|.+..++..+. ....|+.+|.+..+++...+.++. +|..++.++..|..+.... . ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 466787777652256666666543 234799999999888887777655 4545677778888764211 0 11
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++..+-
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 47899988664
No 322
>PRK12937 short chain dehydrogenase; Provisional
Probab=89.47 E-value=6.4 Score=35.96 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
++.+||=.| |.|+.+.+++..+...| .|+.+.. ++.+.+.+.+.+...+. ++.++..|..+.... + ..
T Consensus 4 ~~~~vlItG-~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTG-ASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355666444 46778888887664433 5655544 45556666666666553 467777888764211 1 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEeccCC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~ 316 (384)
+..|.|+..+.-...+.+. ..+.++... ...-...++..+++.+ +++|.+++.+++..
T Consensus 82 ~~id~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~ss~~~ 143 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIA-------DFDLEDFDRTIATNLRGAFVVLREAARHL----GQGGRIINLSTSVI 143 (245)
T ss_pred CCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhhhchHHHHHHHHHHHHh----ccCcEEEEEeeccc
Confidence 4689999866321111111 112222222 1222334555666654 77899999987543
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.40 E-value=2.2 Score=41.05 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=56.6
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc---cccCCCCC
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTV 250 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~---~~~~~~~f 250 (384)
.+++|++||..++|+ |..+..+|...+ ..|++.+.++.+.+.++ .+|++.+.. ....... .......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~----~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAK----ELGADEVLN--SLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEEEc--CCCcCHHHHHHHhcCCCc
Confidence 367889999864432 344445555543 46999999998877664 367654322 1111110 11223579
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|.+ ..+..+++.| ++||+++..
T Consensus 234 D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (338)
T cd08254 234 DVIFD---FVGTQ-------------------------PTFEDAQKAV----KPGGRIVVV 262 (338)
T ss_pred eEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98763 33321 2456677775 999998864
No 324
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.32 E-value=6 Score=37.02 Aligned_cols=79 Identities=10% Similarity=0.001 Sum_probs=49.7
Q ss_pred CCceEEEeccCCC-hHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..||=.|+++| |.+..++..+- ....|+.++.+.+..+.+.+..+.++ .+.++..|..+.... ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 4778999999884 88887777653 33478888887654444444444433 234566787764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.++-
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 57899998763
No 325
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.22 E-value=1.5 Score=42.75 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ce-EEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCcccccCCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GL-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D~~~~~~~~~~~~f 250 (384)
+.+++|++||=.|+ |+.+..++++.+.. .. |++++.+++|++.++ .+|.+.+.-... +...+.....+..|
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHHhCCCCC
Confidence 45678999988754 66555444433221 34 999999999877653 467653321111 10011111222479
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|.. ..+..+++.+ +++|+++..
T Consensus 233 d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 261 (339)
T cd08239 233 DVAIE---CSGNT-------------------------AARRLALEAV----RPWGRLVLV 261 (339)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98864 43331 1345667765 999998743
No 326
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.01 E-value=7.6 Score=35.86 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+|| +..|+|+.+.+++..+- ....|+.++.++.+.+.+.+.+...|. .+.++..|..+..... ..+
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356677 55666788888777554 334899999999888888777766654 4666788887643211 114
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.|+..+-+.
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589998866543
No 327
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.85 E-value=12 Score=34.60 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=51.4
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
|.++|=.|+ .|+.+.+++..+.. ...|++++.+..+++.+.+.+...+ ..+.++..|..+..... ..+.
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 346675555 55567777765433 3489999999988888777776554 35677788887642110 1146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
.|.|+..+..
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 8999987643
No 328
>PRK06172 short chain dehydrogenase; Provisional
Probab=88.70 E-value=10 Score=34.97 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=53.1
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|+ +|+.+..++..+. ....|+.++.+++.++.+.+.++..+. ++.++..|..+.... + ..+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567787775 5666777776543 335899999999988888887777663 467778888764211 0 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
++|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 689999865
No 329
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.41 E-value=8.1 Score=38.00 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+..||=.| |+||.+..++..+. ....|+.++.++++++.+.+.++..|.+ +.++..|..+..... ..+
T Consensus 6 ~~k~vlITG-As~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITG-ASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE-VLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc-EEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456677444 56777887777553 3358999999999999998888877754 555567877642110 115
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++.++-.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 78999987643
No 330
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.28 E-value=9.6 Score=34.87 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=51.6
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.++|=.| |+|+.+..++..+-. ...|++++.++.....+.+.++..+. ++.++..|..+.... . ..+.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV-KAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 44667666 578888888876543 34899999999888777776665543 466778888865321 1 1145
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 89888754
No 331
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.23 E-value=7.5 Score=36.43 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|..+|=.|+++ +|.+..++..+.. ...|+..+.+....+.+++..+.+.-.++.++..|..+.... . ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467889889884 8888888876543 347777765432223333333333223466667888764211 0 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.++.
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 67898887653
No 332
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.10 E-value=3.4 Score=39.95 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.++ .|+.+..+.++.+.. .+|++.+.++++.+.++ .+|.+.
T Consensus 134 ~~~~~g~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 134 CGVKGGETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred hCCCCCCEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCCE
Confidence 34678999986654 344444443333322 37999999988876664 478754
No 333
>PRK09242 tropinone reductase; Provisional
Probab=88.07 E-value=13 Score=34.44 Aligned_cols=128 Identities=10% Similarity=-0.018 Sum_probs=71.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|.++|=.|+ .|+.+..++..+. ....|+.++.+.+.++.+..++.... -..+.++..|..+.... ...
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3667776665 5566777776543 33589999999988888877776541 12466677888764211 012
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
+++|.|+..+. .+. ..| ....+.++..... .-...+++.++..+. -.++|.+++.++..
T Consensus 87 g~id~li~~ag---~~~--~~~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~~ii~~sS~~ 149 (257)
T PRK09242 87 DGLHILVNNAG---GNI--RKA--AIDYTEDEWRGIFETNLFSAFELSRYAHPLLK--QHASSAIVNIGSVS 149 (257)
T ss_pred CCCCEEEECCC---CCC--CCC--hhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHH--hcCCceEEEECccc
Confidence 57899987553 221 111 1122333333222 222334555555431 03468888877643
No 334
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.07 E-value=14 Score=34.17 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |.|+.+..++..+. ....|+..+.++..++.+.+.++..|. .+.++..|..+.... + ..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467888666 57788888877553 335899999999888887777776654 356667888764211 0 124
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886643
No 335
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.02 E-value=18 Score=33.85 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=71.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
++.+||=.| |.|+.+.+++..+.. ...|++++.++..+..+.+.+...+. .+.++..|..+.... + ...
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888676 567777777765543 34899999998888777666666553 356667888764211 0 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.+|.|+..+.. ....+. ...+.++..+ ...-...++..++..+ .+++|.+++.+.
T Consensus 86 ~iD~vi~~ag~-----~~~~~~--~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l---~~~~g~iv~iss 144 (264)
T PRK07576 86 PIDVLVSGAAG-----NFPAPA--AGMSANGFKTVVDIDLLGTFNVLKAAYPLL---RRPGASIIQISA 144 (264)
T ss_pred CCCEEEECCCC-----CCCCcc--ccCCHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCEEEEECC
Confidence 68999986631 111111 1122333222 2222334556666654 246788887654
No 336
>PRK07832 short chain dehydrogenase; Provisional
Probab=88.01 E-value=6.6 Score=36.92 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=46.3
Q ss_pred ccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCCCCEEEEc
Q 016730 186 AAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNTVDRVLLD 256 (384)
Q Consensus 186 cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~fD~VllD 256 (384)
..|+|+.+..+++.+. .+..|+.++.+++.++.+.+.+...+...+.+...|..+.... ...+..|.|+..
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 85 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNI 85 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3456777777776543 3357888999988887777777666544445556777653210 012468999886
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
+.
T Consensus 86 ag 87 (272)
T PRK07832 86 AG 87 (272)
T ss_pred CC
Confidence 53
No 337
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.00 E-value=10 Score=37.19 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+..||=.| |+||.+..++..+. ....|+.++.++.+++.+.+.++..|. ++.++..|..+..... ..+
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 455666555 56677777776553 335899999999999888888887775 4566678887643211 125
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.++.++..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78999987643
No 338
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.88 E-value=15 Score=34.18 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|..+|=.|++ ||.+.+++..+. ....|+.++.++.+++.+.+.+.... -.++.++..|..+..... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46677766654 556677776553 34589999999998888776665432 235667778887753210 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++..+.
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 56899988664
No 339
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.84 E-value=12 Score=35.30 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=51.0
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------cCCCCCCEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------LGLNTVDRV 253 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~~~~~fD~V 253 (384)
.+|=.|| ||.+.+++..+.....|+.+|.+...++.+.+.++..|. .+.++..|..+.... ...+.+|.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4454443 688999998876556899999998888777766665553 456667888764211 012568999
Q ss_pred EEcCC
Q 016730 254 LLDAP 258 (384)
Q Consensus 254 llDaP 258 (384)
+..+.
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 98764
No 340
>PRK07904 short chain dehydrogenase; Provisional
Probab=87.72 E-value=8.7 Score=35.87 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHc-cCC-ceEEEEeCCHHH-HHHHHHHHHHcCCceEEEEecCCCCcccc-------cC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALM-KNT-GLIYANEMKASR-LKSLTANLHRMGVTNTIVCNYDGNELPKV-------LG 246 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~-~~~-g~V~a~D~~~~r-l~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~~ 246 (384)
..+.+||=.|| +||.+.+++..+ ... ..|++++.+++. ++.+.+.++..+..++.++..|..+.... ..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 34567776655 678888888764 332 489999988775 77777777776655688888888764321 11
Q ss_pred CCCCCEEEEcC
Q 016730 247 LNTVDRVLLDA 257 (384)
Q Consensus 247 ~~~fD~VllDa 257 (384)
.+..|.++..+
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 24799888743
No 341
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.58 E-value=7.9 Score=39.19 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHH---cCC----------ceEEEEecCCCCcccccCCCCCCEE
Q 016730 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR---MGV----------TNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 188 gpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r---~g~----------~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
|-|..++-+|...... -.|+++|+++.+++.+..--.. -++ ..... ..|... . ...|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra-Ttd~~~----l--~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA-TTDPEE----L--KECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE-ecChhh----c--ccCCEE
Confidence 6666666666555443 5899999999999887532100 000 00111 011111 1 357877
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc-CC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK-RD 332 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~-~~ 332 (384)
++-.|---.+ .+.||+. .+.+|.+.+...|++|-.+++ -.|..|--.|+++..+++. .|
T Consensus 89 iI~VPTPl~~--~~~pDls-----------------~v~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~sg 148 (436)
T COG0677 89 IICVPTPLKK--YREPDLS-----------------YVESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEERSG 148 (436)
T ss_pred EEEecCCcCC--CCCCChH-----------------HHHHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhcCC
Confidence 7766532222 2667654 345555555555798766655 4577899999999999987 44
Q ss_pred CE
Q 016730 333 VK 334 (384)
Q Consensus 333 ~~ 334 (384)
.+
T Consensus 149 L~ 150 (436)
T COG0677 149 LK 150 (436)
T ss_pred Cc
Confidence 43
No 342
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=87.52 E-value=13 Score=35.65 Aligned_cols=45 Identities=24% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHH
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~ 224 (384)
....+||=-|||-|..+.-+|.+ +-.+.|+|.|--++-...-.+.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 34678999999999999988887 3589999999998766554443
No 343
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.50 E-value=4.7 Score=40.73 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=31.2
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHcc-CCceEEEEeCCHHHHHHHHHH
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMK-NTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~-~~g~V~a~D~~~~rl~~l~~n 222 (384)
.+++|++||=.++ .|+.+. .++..++ +...|+++|.+++|++.+++.
T Consensus 172 ~~~~g~~VlV~G~-~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGG-AGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeC-CCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999886653 244444 4444432 123799999999999988764
No 344
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.46 E-value=9.7 Score=34.92 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=51.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+.+||= ..|+|+.+.+++..+. ....|+.++.++.....+...+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlI-tGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIV-TGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3556774 4477888888887553 334899999988777666666554332 3556678887653210 113
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999987653
No 345
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.31 E-value=15 Score=33.59 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEE-EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a-~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
+|.+||=.| |.|+.+.+++..+...| .|+. .+.+....+.+.+.++..+. ++.++..|..+.... + ..
T Consensus 3 ~~~~vlItG-a~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTG-SSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 355677455 56888888887665444 6655 46677777776666666553 466667888764311 1 11
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+..|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999997753
No 346
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=87.23 E-value=2.3 Score=40.29 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=49.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~Vll 255 (384)
+..+|+|+|||-==.++-...... ....+|.|+|...++.+..-+..+|... .+...|...-+. ....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~~---~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDPP---KEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSHT---TSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccCC---CCCcchhhH
Confidence 367999999998876654333322 3589999999999999999999999754 333446554321 256899887
No 347
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.20 E-value=7.5 Score=36.07 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=48.5
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------C--CCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------G--LNTV 250 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------~--~~~f 250 (384)
+||=.| |+|+.+..++..+.. ...|++++.++..++.+...+. + .++.++..|..+..... . .+++
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 355444 557778887775543 3489999999888777655443 2 35777788887643210 0 2578
Q ss_pred CEEEEcCCC
Q 016730 251 DRVLLDAPC 259 (384)
Q Consensus 251 D~VllDaPC 259 (384)
|.|+..+..
T Consensus 79 d~vi~~ag~ 87 (260)
T PRK08267 79 DVLFNNAGI 87 (260)
T ss_pred CEEEECCCC
Confidence 999986643
No 348
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.09 E-value=18 Score=33.41 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=53.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.++|=.| |+|+.+.+++..+-. ...|+..+.+..++..+.+.+...+. .+..+..|..+.... . ..+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 355677555 556778877776543 34899999998888888777766553 455667888764211 0 125
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 68999987654
No 349
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.02 E-value=17 Score=34.03 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=53.4
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc-------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL-------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~-------~~~~ 249 (384)
+.+||=. .|+|+.+.+++..+. ....|++++.+++.++.+.+.+...+. .++.++..|..+..... ..+.
T Consensus 3 ~k~~lIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVT-GASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEE-CCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4456644 466677777776543 334899999998888887776666554 35777788888753210 1146
Q ss_pred CCEEEEcCCCCC
Q 016730 250 VDRVLLDAPCSG 261 (384)
Q Consensus 250 fD~VllDaPCSg 261 (384)
.|.|+..+..+.
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799998765433
No 350
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=86.94 E-value=10 Score=37.18 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccC-CCCCCEEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG-LNTVDRVLL 255 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~-~~~fD~Vll 255 (384)
.+.+||=.| |+|..+.++++.+-..| .|++++.+......+...+.. ..++.++.+|..+...... ...+|.|+-
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 366788555 57999999988664444 788888776554443333321 2357777888876532210 135899988
Q ss_pred cCCCCCC
Q 016730 256 DAPCSGT 262 (384)
Q Consensus 256 DaPCSg~ 262 (384)
-|..++.
T Consensus 86 ~A~~~~~ 92 (353)
T PLN02896 86 VAASMEF 92 (353)
T ss_pred CCccccC
Confidence 7765443
No 351
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.88 E-value=20 Score=32.64 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=53.4
Q ss_pred CceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+ .....|++++.++.+++.+...+...+. ++.++..|..+.... + ..+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45677666 5778888887754 3345899999998888777666665543 567778888765321 1 1146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
.|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999987653
No 352
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=86.87 E-value=11 Score=34.62 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=51.9
Q ss_pred EEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCCE
Q 016730 182 VIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD~ 252 (384)
+|=.| |.|+.+.+++..+- ....|+.++.+..+++.+.+.+...+. ++.++..|..+..... ..+..|.
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 34334 56777887776553 334899999998888877777766554 4667778887643210 1146899
Q ss_pred EEEcCCCCCCC
Q 016730 253 VLLDAPCSGTG 263 (384)
Q Consensus 253 VllDaPCSg~G 263 (384)
|+..+.....+
T Consensus 81 vi~~ag~~~~~ 91 (254)
T TIGR02415 81 MVNNAGVAPIT 91 (254)
T ss_pred EEECCCcCCCC
Confidence 99977654433
No 353
>PRK07102 short chain dehydrogenase; Provisional
Probab=86.68 E-value=16 Score=33.53 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.0
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc---C--CCCCCEEE
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G--LNTVDRVL 254 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~---~--~~~fD~Vl 254 (384)
+||=.| |+|+.+.+++..+-. ...|++++.++...+.+.+.+...+-.++.++..|..+..... . ...+|.|+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 566444 567788887776543 3489999999988877766665444457788888888753211 0 13579999
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
..+.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8764
No 354
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.60 E-value=17 Score=34.28 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=47.9
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++. +|.+..++..+.. ...|+.++.+....+.+++..+..|. ...+..|..+.... ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888876 3677777765533 34788788775444444444444453 23557888764221 012
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
+.+|.++.++
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 5799888766
No 355
>PRK08251 short chain dehydrogenase; Provisional
Probab=86.60 E-value=24 Score=32.25 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=53.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCccccc--------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+.+||=.| |+||.+.+++..+.. ...|+..+.++.+++.+...+.... -.++.+...|..+..... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677555 577888888876533 3489999999999888877665432 235777788888653110 124
Q ss_pred CCCEEEEcCCCC
Q 016730 249 TVDRVLLDAPCS 260 (384)
Q Consensus 249 ~fD~VllDaPCS 260 (384)
..|.|+..+-.+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
No 356
>PRK12829 short chain dehydrogenase; Provisional
Probab=86.59 E-value=16 Score=33.73 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----- 245 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~----- 245 (384)
...++.+||=.|+. |+.+.+++..+. ....|++++.+++.++.+.+...+. ++.++..|..+.... .
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHH
Confidence 33467889977765 777888777643 3358999999988777665554322 456677888764321 1
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
...++|.|+..+.
T Consensus 83 ~~~~~d~vi~~ag 95 (264)
T PRK12829 83 RFGGLDVLVNNAG 95 (264)
T ss_pred HhCCCCEEEECCC
Confidence 0146899998664
No 357
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=86.53 E-value=7 Score=37.47 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=62.6
Q ss_pred ceEEEeccCCC--hHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCC----CCCC--
Q 016730 180 ERVIDMAAAPG--GKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----NTVD-- 251 (384)
Q Consensus 180 ~~VLD~cagpG--gkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~----~~fD-- 251 (384)
...||+|||-= +.+-.+|+...+..+|+-+|.++--+...+..+....-....++.+|.++....+.. +.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 46999999943 345568888878899999999999888888777654322378889999987544321 1222
Q ss_pred ---EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 ---RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ---~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|++- |++---| ..++. ..++....+.| .||.+|+.|..+-
T Consensus 150 rPVavll~------~vLh~v~------D~~dp-------~~iv~~l~d~l----apGS~L~ish~t~ 193 (267)
T PF04672_consen 150 RPVAVLLV------AVLHFVP------DDDDP-------AGIVARLRDAL----APGSYLAISHATD 193 (267)
T ss_dssp S--EEEEC------T-GGGS-------CGCTH-------HHHHHHHHCCS-----TT-EEEEEEEB-
T ss_pred CCeeeeee------eeeccCC------CccCH-------HHHHHHHHHhC----CCCceEEEEecCC
Confidence 34431 2322111 11222 34666667775 9999999997765
No 358
>PLN02827 Alcohol dehydrogenase-like
Probab=86.49 E-value=3.3 Score=41.40 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=34.1
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..+.++.+.. ..|+++|.++++++.+ +.+|++.
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~ 241 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTD 241 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcE
Confidence 34678999998754 66665554443322 2588999999887766 4478753
No 359
>PRK07890 short chain dehydrogenase; Provisional
Probab=86.32 E-value=18 Score=33.31 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
++.+||=.| |+|+.+.+++..+-. ...|+.++.++..++.+...+...+. ++..+..|..+.... . ..+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 356777555 566778887775543 34899999999888887777766554 466778888764211 0 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
..|.|+..+
T Consensus 82 ~~d~vi~~a 90 (258)
T PRK07890 82 RVDALVNNA 90 (258)
T ss_pred CccEEEECC
Confidence 689999866
No 360
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.25 E-value=2 Score=38.84 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHH------------HHHHcC-CceEEEEecCCCCcccccCCCCCCEE
Q 016730 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTA------------NLHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 188 gpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~------------n~~r~g-~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
|.|..++-+|..+... -.|+++|+++++++.+++ .+++.. -.+..+. .|.... . ...|.+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i--~~adv~ 80 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---I--KDADVV 80 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---H--HH-SEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---h--hccceE
Confidence 6666666555554444 489999999999988763 222221 1233342 222211 1 357888
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhcC
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~~ 331 (384)
++-.|.=-.+ ...||..+. ...++..... +++ |.+|..-+|+-|--.++++..++++.
T Consensus 81 ~I~VpTP~~~--~~~~Dls~v-------------~~a~~~i~~~----l~~-~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 81 FICVPTPSDE--DGSPDLSYV-------------ESAIESIAPV----LRP-GDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp EE----EBET--TTSBETHHH-------------HHHHHHHHHH----HCS-CEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred EEecCCCccc--cCCccHHHH-------------HHHHHHHHHH----Hhh-cceEEEccEEEEeeehHhhhhhhhhh
Confidence 8866531111 222333211 1223333343 377 56666677888888888998888753
No 361
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=86.18 E-value=2.3 Score=40.55 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=48.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCc-ccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~-~~~~~~~~fD 251 (384)
.++||+.|| +.||-||.++.+.|+.+.. .++++.-.+.++.+.+++| |+.. |.....|..+- .+...+..+|
T Consensus 143 ~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngKGVd 217 (336)
T KOG1197|consen 143 NVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGKGVD 217 (336)
T ss_pred CCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCCCce
Confidence 589999998 7778888888888876533 4778887788888777665 6653 22333333221 2222345677
Q ss_pred EEE
Q 016730 252 RVL 254 (384)
Q Consensus 252 ~Vl 254 (384)
.+.
T Consensus 218 ~vy 220 (336)
T KOG1197|consen 218 AVY 220 (336)
T ss_pred eee
Confidence 764
No 362
>PRK08324 short chain dehydrogenase; Validated
Probab=86.14 E-value=11 Score=41.02 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+|.+||=.| |.|+.+.+++..+.. ...|+++|.+..+++.+...+... ..+.++..|..+.... . ..+
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567777555 467777777765533 348999999998887776554432 3566777887764221 1 124
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHH----HHHHHHHHHHHHHHHHchhccCCC---CcEEEEEec
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKS---GGYIVYSTC 313 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i----~~l~~~Q~~iL~~a~~~L~~~lkp---GG~lvYsTC 313 (384)
.+|.|+..+..+..+.+.. .+.++. .....-...+++.+++.+ +. ||.+|+.+.
T Consensus 498 ~iDvvI~~AG~~~~~~~~~-------~~~~~~~~~~~~N~~g~~~l~~~~~~~l----~~~~~~g~iV~vsS 558 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEE-------TSDEDWRRSFDVNATGHFLVAREAVRIM----KAQGLGGSIVFIAS 558 (681)
T ss_pred CCCEEEECCCCCCCCChhh-------CCHHHHHHHHHHHhHHHHHHHHHHHHHH----HhcCCCcEEEEECC
Confidence 7899998664333332211 122222 122222344566666654 44 678876553
No 363
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=86.00 E-value=1.5 Score=44.73 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=44.5
Q ss_pred eEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEec
Q 016730 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNY 236 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~-~v~~~~~ 236 (384)
.|||+|+|+|-.+++.+..+. -.|+|+|+-+.+.+.++.-.++.|.+ ++.+++-
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 599999999998876666543 47999999999999999999999975 4666553
No 364
>PRK08589 short chain dehydrogenase; Validated
Probab=85.97 E-value=19 Score=33.78 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |+||.+..++..+. ....|+.++.+ .+++.+.+.++..+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlItG-as~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITG-ASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 355677444 45666777776543 34589999998 677766666665553 4666678877642110 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.++.++.
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6899998774
No 365
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=85.94 E-value=6.5 Score=38.96 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=37.4
Q ss_pred CceEEEeccCCChHHHHHHHHc--------cCC-------ceEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALM--------KNT-------GLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDG 238 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~--------~~~-------g~V~a~D~~~~rl~~l~~n~~r~g-----~~~v~~~~~D~ 238 (384)
--+|+|+||+.|.-|+.+.+.+ ... -.|+-+|.-..=...+-..+.... ..++-+.-.-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 3579999999999998755432 111 378889985444444433333321 22333322222
Q ss_pred CCcccccCCCCCCEEEE
Q 016730 239 NELPKVLGLNTVDRVLL 255 (384)
Q Consensus 239 ~~~~~~~~~~~fD~Vll 255 (384)
..+...++.++.|.+..
T Consensus 97 SFy~rLfP~~Svh~~~S 113 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHS 113 (334)
T ss_dssp -TTS--S-TT-EEEEEE
T ss_pred hhhhccCCCCceEEEEE
Confidence 33344455577888764
No 366
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.92 E-value=3.4 Score=41.01 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=57.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc----cccCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~----~~~~~ 247 (384)
..+++|++||=.|+ |+.+..++++.+..| .|+++|.+++|++.++ .+|.+.+ +..+..++. ....
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~~~- 257 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATAT--VNAGDPNAVEQVRELTG- 257 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCceE--eCCCchhHHHHHHHHhC-
Confidence 34678999988764 555554444433222 6999999999987764 4677532 222211111 1111
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
+.+|.|+- |+|.+ ..+..+++.+ ++||+++...
T Consensus 258 ~g~d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFE---MAGSV-------------------------PALETAYEIT----RRGGTTVTAG 290 (371)
T ss_pred CCCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEEc
Confidence 36898863 44432 1345667775 9999987543
No 367
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.34 E-value=24 Score=32.15 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=52.4
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+. ....|++++.+..++..+...+...+. ++.+...|..+.... + ..+.
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788555 46777777776543 335899999998887777776665543 477778888764211 1 1136
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.|+..+..
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999987643
No 368
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.33 E-value=24 Score=32.88 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.+.++|=.|++ |+.+.+++..+ .....|+..+.++.+++.+...+...|. .+.++..|..+.... . ..+
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45667766655 45566666543 3345888889999988888888776654 366677888764221 0 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999987653
No 369
>PRK06197 short chain dehydrogenase; Provisional
Probab=85.28 E-value=20 Score=34.32 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+|| +..|+||.+.+++..+.. ...|+.++.+..+.+.+.+.+... +-..+.++..|..+..... ..
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777 444567888888875543 348888898888877666655432 2234667788887653210 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.|+..+.
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899998764
No 370
>PRK06182 short chain dehydrogenase; Validated
Probab=85.22 E-value=9.4 Score=35.82 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=46.0
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+|| +..|+|+.+.+++..+.. ...|++++.++++++.+.. . ++.++..|..+.... . ..+.
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666 444677888888886543 3489999999887755432 2 245666787764321 1 1247
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899998664
No 371
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=85.09 E-value=15 Score=35.87 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=47.3
Q ss_pred CceEEEeccCCChHHHHHHHHccCC---ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-CCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT---GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~---g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-~~~~fD~Vl 254 (384)
|.+||=.| |+|+.+.+++..+-.. ..|++++.+......+... ++-.++.++.+|.++..... .-..+|.|+
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FPAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hCCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 56777555 5688999988865432 3788888776554333322 22245777788988753221 013589998
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
.-+.
T Consensus 80 h~Ag 83 (324)
T TIGR03589 80 HAAA 83 (324)
T ss_pred ECcc
Confidence 8654
No 372
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.08 E-value=1.2 Score=44.21 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=27.4
Q ss_pred ceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHH
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r 225 (384)
.+|||+|+|||.-...+-...+.-..++-++.|+. +..+-.-+++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~ 159 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAE 159 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHh
Confidence 45999999999755444445544345666777765 3344444443
No 373
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.08 E-value=12 Score=35.23 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=45.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~------~~~ 248 (384)
+.+||=.| |+||.+.+++..+.. ...|++++.+++.++.+.. .+ +.++..|..+.... . ..+
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677555 568888888876543 3589999999887765543 23 45566787764211 0 124
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
..|.|+..+
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 689998865
No 374
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.06 E-value=19 Score=33.41 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=49.7
Q ss_pred eEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~fD 251 (384)
+||=.|++ ||.+..++..+. ....|+.++.++..++.+.+.++..+ ++.++..|..+.... . ..+.+|
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 46656654 666777776553 33589999999998888877776544 466677888764211 0 125789
Q ss_pred EEEEcCC
Q 016730 252 RVLLDAP 258 (384)
Q Consensus 252 ~VllDaP 258 (384)
.++..+.
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9988664
No 375
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=85.06 E-value=27 Score=31.87 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.8
Q ss_pred eEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-------ccc-CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-------KVL-GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-------~~~-~~~~fD 251 (384)
+||=.| |+|+.+.+++..+- ....|++++.++...+.+...+...+. ++.++..|..+.. ... .....|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455444 66788888876543 334899999999888888777665553 5677778887643 110 124689
Q ss_pred EEEEcCCCC
Q 016730 252 RVLLDAPCS 260 (384)
Q Consensus 252 ~VllDaPCS 260 (384)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999876443
No 376
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.02 E-value=17 Score=35.31 Aligned_cols=119 Identities=16% Similarity=0.216 Sum_probs=73.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
.|+.||=-|+|.|-==....+..+...+++..|++++-.....+.+++.| .+.....|..+..... +-+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 58899999998885322333444444578999999999999888888887 5666667777643211 2257
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH--------HHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK--------CSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~--------l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.|.++-+| |+...++- +.-+.+.+.. ....-+.+|-...+ ++.|.+|-.
T Consensus 115 V~ILVNNA-----GI~~~~~l--l~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~------~~~GHIV~I 171 (300)
T KOG1201|consen 115 VDILVNNA-----GIVTGKKL--LDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE------NNNGHIVTI 171 (300)
T ss_pred ceEEEecc-----ccccCCCc--cCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh------cCCceEEEe
Confidence 88888776 45544431 2334444443 22223445554444 467777643
No 377
>PRK08643 acetoin reductase; Validated
Probab=84.79 E-value=22 Score=32.83 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred ceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~f 250 (384)
..+| +..|.|+.+.++++.+-. ...|+.++.+..+++.+...+...+. ++.++..|..+.... + ..++.
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555 445667788888876543 34899999999888888887776553 466677888764311 0 11468
Q ss_pred CEEEEcC
Q 016730 251 DRVLLDA 257 (384)
Q Consensus 251 D~VllDa 257 (384)
|.|+..+
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9998865
No 378
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.57 E-value=18 Score=34.24 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..||=.|++. +|.+..++..+.. ...|+..+.+....+.+.+..+.++.. .++..|..+.... ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367888888874 6777777765533 347888888754333444444445533 4556788875321 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.+|-
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 67899888763
No 379
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.53 E-value=18 Score=34.59 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCH-HHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~-~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
+|.+||=.|+ .|+.+.+++..+. ....|+.++.+. ..++.+...++..|. ++.++..|..+.... + ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4667886665 5666777776553 335788888764 345555555555453 466778888764221 1 11
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHH----HHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~----~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
..+|.|+..+.- +.... + . ...+.++.. .....-..++..+.+.+ +++|.+|+.+-
T Consensus 123 ~~iD~lI~~Ag~---~~~~~-~-~-~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~----~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAF---QYPQQ-S-L-EDITAEQLDKTFKTNIYSYFHMTKAALPHL----KQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcc---cCCCC-C-c-ccCCHHHHHHHHhhhhHHHHHHHHHHHHHH----hhCCeEEEEec
Confidence 468999886532 11110 0 0 011222222 22223344555666654 67888888764
No 380
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.36 E-value=27 Score=32.96 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=53.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.|+ +||.+.+++..+.. ...|+..+.+...++.+.+.++..|. .+.++..|..+..... ..+
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3567775665 56677877775543 34788899999888877777765554 3666678887643211 124
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.|+.++.-
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 381
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=84.26 E-value=30 Score=31.84 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+|.+||=.|+ .|+.+..++..+. .+..|+.++.+++.++.+...++..|. .+.++..|..+.... + ..+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678886664 5666777776543 345899999998888888777777664 366777887764211 0 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
++|.|+..+-
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 382
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.95 E-value=21 Score=33.38 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=44.4
Q ss_pred CCceEEEeccCCC-hHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPG-GKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpG-gkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++.| |.+..++..+. ....|+..+.+....+.+++..+..|.. .++..|..+.... ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~--~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCN--FVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCc--eEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567787787765 66666666553 3347777777643223344433444432 3446788764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++.++.
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 57998887553
No 383
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.68 E-value=27 Score=32.86 Aligned_cols=79 Identities=15% Similarity=0.043 Sum_probs=45.2
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++. +|.+..++..+.. ...|+.++.+. +++...+.+.... ..+.++..|..+.... ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 366788888887 3777777765543 34777777763 3322222222211 2344566788764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.++.
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 57899998764
No 384
>PRK12742 oxidoreductase; Provisional
Probab=83.40 E-value=19 Score=32.66 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCCc-eEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVD 251 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~-~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD 251 (384)
.|.+||=. .|+|+.+..+++.+...| .|+.... +++.++.+.. ..+. .++..|..+.... . ....+|
T Consensus 5 ~~k~vlIt-GasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~~~~---~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVL-GGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---ETGA---TAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---HhCC---eEEecCCCCHHHHHHHHHHhCCCc
Confidence 36677744 457778888887664444 6776654 4555544432 3343 3445676653211 1 124689
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.++..+.....+- .+..+.++..... .--..++..++..+ +.+|.+|+.+.
T Consensus 78 ~li~~ag~~~~~~-------~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~g~iv~isS 132 (237)
T PRK12742 78 ILVVNAGIAVFGD-------ALELDADDIDRLFKINIHAPYHASVEAARQM----PEGGRIIIIGS 132 (237)
T ss_pred EEEECCCCCCCCC-------cccCCHHHHHHHHhHHHHHHHHHHHHHHHHH----hcCCeEEEEec
Confidence 9988654322111 1112333332222 12223445555554 66788887654
No 385
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=83.37 E-value=16 Score=36.95 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=27.2
Q ss_pred CceEEEeccCCChHHHHHHHHc--------c------CCceEEEEeCCHHHHHHHHHH
Q 016730 179 KERVIDMAAAPGGKTTYIAALM--------K------NTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~--------~------~~g~V~a~D~~~~rl~~l~~n 222 (384)
.-+|+|+|||+|..|+.+...+ . ..-.|+-+|.-..-...+-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~ 121 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL 121 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh
Confidence 4589999999999887553321 0 124677788754444444333
No 386
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.22 E-value=16 Score=33.22 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD~ 252 (384)
+|.++| +..|.|+.+.+++..+.. ...|+.++.+.+.++.+.+ ..+. .++..|..+.... + ....+|.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~---~~~~---~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG---ETGC---EPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhCC---eEEEecCCCHHHHHHHHHHhCCCCE
Confidence 456777 455567777877776543 3489999998877655443 2232 3445676653211 1 1146899
Q ss_pred EEEcCCCCC
Q 016730 253 VLLDAPCSG 261 (384)
Q Consensus 253 VllDaPCSg 261 (384)
|+..+..+.
T Consensus 81 vi~~ag~~~ 89 (245)
T PRK07060 81 LVNCAGIAS 89 (245)
T ss_pred EEECCCCCC
Confidence 998776543
No 387
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.03 E-value=33 Score=30.99 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=51.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+.. ...|+.++.++.+.+.+...++..+.+ +.++..|..+.... + ....
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE-ARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCc-eEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45777555 478888888876533 337999999998888777766665543 55666888764211 1 0145
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 83 id~vi~~ag 91 (246)
T PRK05653 83 LDILVNNAG 91 (246)
T ss_pred CCEEEECCC
Confidence 799988554
No 388
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.98 E-value=14 Score=34.43 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCceEEEeccCC-ChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|..||=.|++. +|.+..++..+- ....|+..+.+. +... .++++.-..+.++..|..+.... . ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKK---SLQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHH---HHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467889888875 677777777653 335788888774 3222 22222223466677888764211 0 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+++|.++.++-
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 57899988763
No 389
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.81 E-value=13 Score=34.69 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCceEEEeccC-CChHHHHHHHHccC-CceEEEEeCCH--HHHHHHHHHHHHcCCceEEEEecCCCCcccc--------c
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALMKN-TGLIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------L 245 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~D~~~--~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~ 245 (384)
.|.++|=.|++ .+|.+..++..+.. ...|+..+.+. +.++.+.+ .++- .+.++..|..+.... .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 46788988985 68888888875543 34788887653 33444333 3332 345667788764211 0
Q ss_pred CCCCCCEEEEcC
Q 016730 246 GLNTVDRVLLDA 257 (384)
Q Consensus 246 ~~~~fD~VllDa 257 (384)
..+.+|.++.++
T Consensus 82 ~~g~iD~li~nA 93 (256)
T PRK07889 82 HVDGLDGVVHSI 93 (256)
T ss_pred HcCCCcEEEEcc
Confidence 125799998865
No 390
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.71 E-value=5.7 Score=39.40 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=33.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..++++.+.. ..|+++|.+++|++.++ ++|.+.
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~----~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINPAKFELAK----KLGATD 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCCe
Confidence 35678999998865 55554444333222 26999999999988774 467753
No 391
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.66 E-value=8.9 Score=37.80 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCceEEEeccC--CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 175 APQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 175 ~~~~g~~VLD~cag--pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
.+++|++||=.+++ -|..+..+|..++ .+|++++.++++.+.+++ .+|.+.
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 46789999876652 3444455565553 469999999888766642 367754
No 392
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.65 E-value=26 Score=32.58 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+|.+||=.| |.|+.+.++++.+. ....|+.++.+++.++.+.+.+...+. .+.++..|..+..... ..+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467788676 46778888887553 335899999999888877777766553 4667778887653210 014
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
.+|.|+..+
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689988865
No 393
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.46 E-value=34 Score=31.61 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=52.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|+ .||.+.+++..+- ....|+.++.++.+++.+.+.+...+ -.++.++..|..+.... . ..
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3667886665 4667777777553 34589999999998888877776521 12466777888764211 0 11
Q ss_pred CCCCEEEEcC
Q 016730 248 NTVDRVLLDA 257 (384)
Q Consensus 248 ~~fD~VllDa 257 (384)
+.+|.++..+
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 4789998865
No 394
>PRK09135 pteridine reductase; Provisional
Probab=82.39 E-value=28 Score=31.59 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=69.5
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~-~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.+.+||=.|+ .|+.+.+++..+. ....|++++.+ ....+.+...+...+-.++.++..|.++..... ..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 6778888887654 33588998874 455666555555544345777788887643211 01
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
...|.|+..+.....+.+...+ +......+.....-...+++.+...+ -+.+|.+++.
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~---~~~~~~~~~~n~~g~~~l~~~~~~~~---~~~~~~~~~~ 141 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSIT---EAQWDDLFASNLKAPFFLSQAAAPQL---RKQRGAIVNI 141 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCC---HHHHHHHHHHhchhHHHHHHHHHHHH---hhCCeEEEEE
Confidence 3589999865422222111110 00011122233344555777776654 2446666654
No 395
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.33 E-value=25 Score=33.19 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=47.4
Q ss_pred CCceEEEeccC-CChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..+|=.|++ .+|.+..+++.+.. ...|+.+..+....+.+++..+.+|. ...+..|..+.... ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCCCHHHHHHHHHHHHHhc
Confidence 35678888886 47888888876643 34777666554333444444444442 34567888764211 012
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.+|-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 57899998774
No 396
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=82.11 E-value=0.82 Score=38.68 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=48.3
Q ss_pred EEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEE
Q 016730 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (384)
Q Consensus 231 v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvY 310 (384)
..+..+|++.....+. ..||.|++|+= .-.++|++ |+. +++....+++ ++||+++-
T Consensus 33 L~L~~gDa~~~l~~l~-~~~Da~ylDgF-----sP~~nPel---Ws~-----------e~~~~l~~~~----~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD-ARFDAWYLDGF-----SPAKNPEL---WSE-----------ELFKKLARLS----KPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB--T-EEEEEE-SS------TTTSGGG---SSH-----------HHHHHHHHHE----EEEEEEEE
T ss_pred EEEEEcHHHHHHHhCc-ccCCEEEecCC-----CCcCCccc---CCH-----------HHHHHHHHHh----CCCcEEEE
Confidence 4556678766433232 68999999962 12578874 343 4666667765 99999874
Q ss_pred EeccCCccccHHHHHHHHhcCCCEEeec
Q 016730 311 STCSIMVTENEAVIDYALKKRDVKLVPC 338 (384)
Q Consensus 311 sTCSi~~~ENe~vv~~~l~~~~~~l~~~ 338 (384)
.||+ ..|...|...||.+...
T Consensus 89 ys~a-------~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 89 YSSA-------GAVRRALQQAGFEVEKV 109 (124)
T ss_dssp S--B-------HHHHHHHHHCTEEEEEE
T ss_pred eech-------HHHHHHHHHcCCEEEEc
Confidence 4442 45889999999988654
No 397
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=82.10 E-value=9.2 Score=37.66 Aligned_cols=103 Identities=24% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEE-EecCCCCc-ccccCCCCCC
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNEL-PKVLGLNTVD 251 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~-~~~D~~~~-~~~~~~~~fD 251 (384)
..++|++||=.+ |.||.++.+.++.+..| .+++.-.+++..+ .++.+|.+.+.- ...|..+- .....+..+|
T Consensus 139 ~l~~g~~VLV~g-aaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 139 GLKPGETVLVHG-AAGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCCCCEEEEec-CCchHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 467899999554 45555555555544444 6666666665554 446678764332 22222111 1222334799
Q ss_pred EEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 252 ~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.|+- +- | ...+..++..| +++|+++....+-
T Consensus 214 vv~D-~v----G------------------------~~~~~~~l~~l----~~~G~lv~ig~~~ 244 (326)
T COG0604 214 VVLD-TV----G------------------------GDTFAASLAAL----APGGRLVSIGALS 244 (326)
T ss_pred EEEE-CC----C------------------------HHHHHHHHHHh----ccCCEEEEEecCC
Confidence 9974 21 1 12445566665 8999999866544
No 398
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=82.06 E-value=38 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=52.8
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.|+ +|+.+.+++..+-.. ..|+.++.+......+...+...+. ++.++..|..+.... . ....
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 566776664 577777777755433 4899999999888887777766543 467778888764211 0 0136
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
.|.|+..+..
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 8999987654
No 399
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=81.82 E-value=10 Score=37.55 Aligned_cols=95 Identities=22% Similarity=0.276 Sum_probs=55.3
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCC
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGL 247 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~ 247 (384)
.+++|++||=.++ |+.+. .+++..+ ...|+++|.++.+.+.++ .+|.+.+ +..+-..+ .... .
T Consensus 183 ~~~~g~~vlI~g~--g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~----~~g~~~~--i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 183 KPRPGSSIAVFGA--GAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAK----ELGATHV--INPKEEDLVAAIREIT-G 252 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCcEE--ecCCCcCHHHHHHHHh-C
Confidence 4678899888754 45444 4444443 236999999998877654 3666432 22221111 1112 3
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..||.|+- |+|.+ ..+..+++.+ +++|+++..
T Consensus 253 ~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALD---TTGVP-------------------------AVIEQAVDAL----APRGTLALV 284 (365)
T ss_pred CCCcEEEE---CCCCc-------------------------HHHHHHHHHh----ccCCEEEEe
Confidence 56998874 44432 1356677775 888988753
No 400
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.81 E-value=21 Score=34.11 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.| |+||.+..++..+.. ...|+.++.++++++.+.+.+.. +. .+..+..|..+..... ..+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DD-RVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CC-cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467788555 556677777776543 34899999999887776655431 22 3444457877642110 115
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.|+.++-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 7899998764
No 401
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=81.79 E-value=8.6 Score=36.85 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=32.6
Q ss_pred cCCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.+ |.|+.+. .+|..++ ..|++++.++++.+.+++ +|++.
T Consensus 139 ~~~~~g~~vlI~g-a~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~ 191 (329)
T cd08294 139 CKPKAGETVVVNG-AAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDA 191 (329)
T ss_pred cCCCCCCEEEEec-CccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCE
Confidence 4577899988554 3444444 4444442 479999989888777643 67754
No 402
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.78 E-value=7.2 Score=37.98 Aligned_cols=101 Identities=26% Similarity=0.391 Sum_probs=56.1
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCc-e-EEEEeCCHHHHHHHHHHHHHcCCceEEEEec-C----CCCccccc
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-L-IYANEMKASRLKSLTANLHRMGVTNTIVCNY-D----GNELPKVL 245 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~-D----~~~~~~~~ 245 (384)
....++|++||=.++ |+.+..++++....| . |++++.++++.+.+++ +|.+.+.-... + ...+....
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 345678999988543 555544444433323 4 8899888888766643 47654322111 1 01111222
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
.+..||.|+- |+|.. ..+..+++.+ +++|+++..
T Consensus 231 ~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIE---CTGAE-------------------------SCIQTAIYAT----RPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 3356998864 44431 1345667765 899998743
No 403
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.78 E-value=22 Score=30.27 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred EEEeccCCChHHHHHHHHccC--CceEEEEeCC--HHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCC
Q 016730 182 VIDMAAAPGGKTTYIAALMKN--TGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNT 249 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~--~g~V~a~D~~--~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~ 249 (384)
||=.| |.||.+..++..+-. ...|+.+..+ ..+.+.+...++..+ .++.++..|..+.... .....
T Consensus 3 ~lItG-a~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 3 VLITG-ASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEC-CCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 44344 446667766664432 3478888888 888888888888878 6788888998764211 01268
Q ss_pred CCEEEEcCCCCC
Q 016730 250 VDRVLLDAPCSG 261 (384)
Q Consensus 250 fD~VllDaPCSg 261 (384)
+|.++..+....
T Consensus 81 ld~li~~ag~~~ 92 (167)
T PF00106_consen 81 LDILINNAGIFS 92 (167)
T ss_dssp ESEEEEECSCTT
T ss_pred cccccccccccc
Confidence 999999765433
No 404
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=81.58 E-value=9.2 Score=37.17 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=33.5
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.++ +|+.+..+.++... ...|++.+.++++.+.+++. +|.+.
T Consensus 147 ~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~ 200 (338)
T cd08295 147 CKPKKGETVFVSAA-SGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDD 200 (338)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCce
Confidence 35788999996554 45555444443322 24788888888887776542 57754
No 405
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.47 E-value=8.5 Score=37.35 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=31.6
Q ss_pred CCCC--ceEEEeccCCChHH---HHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 176 PQEK--ERVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 176 ~~~g--~~VLD~cagpGgkt---~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
.++| ++||=.++ +|+.+ ..+|..++ ...|++++.++++.+.+++. +|.+.+
T Consensus 150 ~~~g~~~~VlI~ga-~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~v 205 (345)
T cd08293 150 ITPGANQTMVVSGA-AGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAA 205 (345)
T ss_pred CCCCCCCEEEEECC-CcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEE
Confidence 5555 88886664 34444 44445442 12699999998887766543 677643
No 406
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=81.30 E-value=27 Score=32.18 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=50.4
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCccccc--------CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
+.+||=.|+ .|+.+.+++..+.. ...|+.+|.+...++.+...+... +-..+.++..|..+..... ...
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346776664 57777777765533 348999999988877766655432 3235677788887642110 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.|+..+.
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6899988764
No 407
>PRK05717 oxidoreductase; Validated
Probab=81.18 E-value=26 Score=32.36 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------c-CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~-~~~ 248 (384)
.|.+||=.|+ .|+.+.+++..+. ....|+.+|.++.+...+.+. .+ .++.++..|..+.... . ..+
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3667885555 5777888887664 335899999887766554332 33 2466778888874221 0 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 68999997754
No 408
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.17 E-value=32 Score=31.35 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=51.0
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+- ....|++++.++..+..+...+.. +. ++.++..|..+..... ....
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GG-RAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666454 55677777776543 334899999999888777666654 32 4667788887653221 1146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.|+..+..
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999987654
No 409
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.16 E-value=40 Score=30.87 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=51.5
Q ss_pred ceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEEc
Q 016730 180 ERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLD 256 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~VllD 256 (384)
.+||=.| |+|+.+.++++.+. ....|++.+.++.....+.+.....+. .+.++..|..+..... .....|.|+.+
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 3566444 56778888877654 335899999988888777776666664 3667778887653221 11379999986
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
+.
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
No 410
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=80.91 E-value=9.3 Score=37.76 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=33.0
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC-c-eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT-G-LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~-g-~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
.+++|++||=.++ |+.+..++++.... . .|+++|.++.+++.++ .+|++.
T Consensus 181 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~----~~ga~~ 232 (365)
T cd08277 181 KVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK----EFGATD 232 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCc
Confidence 4678999987753 66555444333222 2 6999999999887774 467753
No 411
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.68 E-value=32 Score=31.81 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.|+ .|+.+..+++.+- ....|+.++.+ ...+.+.+.+...+ .++.++..|..+.... + ..+
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4667876666 4566777776553 33478888877 55666666666555 3466777888764321 1 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
.+|.++..+.
T Consensus 91 ~id~li~~ag 100 (258)
T PRK06935 91 KIDILVNNAG 100 (258)
T ss_pred CCCEEEECCC
Confidence 6899988654
No 412
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.51 E-value=11 Score=38.50 Aligned_cols=48 Identities=8% Similarity=-0.052 Sum_probs=33.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
.+|++|+=+|+|+=|..........+ ..|+.+|+++.|+..++ .+|..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~----~~G~~ 247 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAA----MEGYE 247 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHH----hcCCE
Confidence 47999999999986655433332222 47999999999977664 36763
No 413
>PRK06196 oxidoreductase; Provisional
Probab=80.29 E-value=35 Score=32.86 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=50.3
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|.+||=.| |+||.+.+++..+.. ...|++++.++++++.+...+. .+.++..|..+.... . ..+
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777566 567788888876543 3489999999887776655443 256667888765321 0 125
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
..|.|+.++..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 78999998753
No 414
>PRK06179 short chain dehydrogenase; Provisional
Probab=80.24 E-value=16 Score=34.13 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=44.1
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+..||=.| |+|+.+.+++..+.. ...|++.+.++..... ..++.++..|..+.... . ..+.
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 34566555 568888888876543 3489999988765432 12456667788764221 0 1246
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+-
T Consensus 74 ~d~li~~ag 82 (270)
T PRK06179 74 IDVLVNNAG 82 (270)
T ss_pred CCEEEECCC
Confidence 899998654
No 415
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.15 E-value=45 Score=31.86 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=52.0
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
|.+||=.| |+||.+.+++..+. .+..|++++.+.++++.+.+.+...+. .+.++..|..+.... . ..+.
T Consensus 40 ~k~vlItG-asggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTG-ASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45666444 56778888877553 335899999999998888877766554 355667888764211 1 1247
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
.|.|+..+
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999854
No 416
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.14 E-value=9.5 Score=37.68 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.2
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.|+ |+.+..++++....| .|++++.++++++.+ +.+|...
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~----~~~Ga~~ 235 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA----KKFGVTE 235 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCce
Confidence 35678999987754 666555444433222 699999999988766 4477653
No 417
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=79.92 E-value=32 Score=33.04 Aligned_cols=80 Identities=16% Similarity=0.031 Sum_probs=47.6
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCcccccC-CCCCCEEE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLG-LNTVDRVL 254 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~~-~~~fD~Vl 254 (384)
.|.+||=.| |+|+.+.+++..+-.. ..|+++..+..............+. .++.++.+|..+...... -..+|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356777555 6789999988765433 4777777665544433222222232 357777888887532110 13589998
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
..+.
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 8653
No 418
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.79 E-value=18 Score=34.59 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=42.9
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
...++|++||=.+ .|+.+..++++.... ..|++++.++++.+.+++ +|...+.... .. .....||.
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~~~~~~----~~---~~~~~~d~ 217 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVETVLPDE----AE---SEGGGFDV 217 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcEEeCcc----cc---ccCCCCCE
Confidence 3467888988764 577766665554432 368999999988877764 6765332221 11 12256998
Q ss_pred EEE
Q 016730 253 VLL 255 (384)
Q Consensus 253 Vll 255 (384)
|+-
T Consensus 218 vid 220 (319)
T cd08242 218 VVE 220 (319)
T ss_pred EEE
Confidence 864
No 419
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.67 E-value=41 Score=31.15 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCceEEEeccCC-ChHHHHHHHHccCC-ceEEEEeC-----------CHHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEM-----------KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 178 ~g~~VLD~cagp-Ggkt~~la~~~~~~-g~V~a~D~-----------~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
+|.+||=.|++. ||.+.+++..+... ..|+..+. +......+.+.++..|. .+.++..|..+....
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence 577888888874 67777777655333 36766542 23334455566666665 466667887764211
Q ss_pred --------cCCCCCCEEEEcCCCC
Q 016730 245 --------LGLNTVDRVLLDAPCS 260 (384)
Q Consensus 245 --------~~~~~fD~VllDaPCS 260 (384)
...+..|.|+.++.+.
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCC
Confidence 0124689999988653
No 420
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.63 E-value=39 Score=30.80 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=66.2
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+.+||=.| |+|+.+.+++..+.. ...|+.+ ..+..........++..+. ++.++..|..+.... . ...
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 56788666 567778888775543 3355443 3455555555555555554 345566787654311 0 014
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHH----HHHHHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~----~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
.+|.|+..+.....+-+.. .+.+... ........+++.+.+.+ +.+|.+|+.+...
T Consensus 84 ~~d~vi~~ag~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~sS~~ 143 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLN-------VDDKLIDKHISTDFKSVIYCSQELAKEM----REGGAIVNIASVA 143 (252)
T ss_pred CCCEEEECCCCCCCCChhh-------CCHHHHHHHHhHhCHHHHHHHHHHHHHh----hcCcEEEEEcchh
Confidence 6899999775433322111 1222111 11222334455566654 6778888876543
No 421
>PRK06482 short chain dehydrogenase; Provisional
Probab=79.62 E-value=23 Score=33.18 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=48.6
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~fD 251 (384)
+|| +..|+|+.+.+++..+.. ...|++++.++++++.++... + .++.++..|..+..... .....|
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G-DRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 456 455678888888876543 348999999988776665432 2 24667778887653210 114689
Q ss_pred EEEEcCCCC
Q 016730 252 RVLLDAPCS 260 (384)
Q Consensus 252 ~VllDaPCS 260 (384)
.|+..+...
T Consensus 79 ~vi~~ag~~ 87 (276)
T PRK06482 79 VVVSNAGYG 87 (276)
T ss_pred EEEECCCCC
Confidence 999865443
No 422
>PRK05855 short chain dehydrogenase; Validated
Probab=79.59 E-value=37 Score=35.27 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=55.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.++|=.| |+||.+.+++..+.. ...|+.++.+...++.+...++..|. ++.++..|..+.... . ..+.
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 45666444 577788887776543 34799999999988888877777665 567778898875321 0 1246
Q ss_pred CCEEEEcCCCCC
Q 016730 250 VDRVLLDAPCSG 261 (384)
Q Consensus 250 fD~VllDaPCSg 261 (384)
+|.++..+-...
T Consensus 393 id~lv~~Ag~~~ 404 (582)
T PRK05855 393 PDIVVNNAGIGM 404 (582)
T ss_pred CcEEEECCccCC
Confidence 899998765433
No 423
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.31 E-value=26 Score=32.38 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=48.3
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+.. ...|+.+|.+..+++.+.+.+ + .++.++..|..+.... . ..+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45676444 667788888876543 348999999988877665433 2 2466677888764221 0 1146
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
.|.++..+.
T Consensus 81 id~li~~ag 89 (257)
T PRK07067 81 IDILFNNAA 89 (257)
T ss_pred CCEEEECCC
Confidence 899888654
No 424
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.14 E-value=24 Score=34.81 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=40.2
Q ss_pred CCCCceEEEeccC-CChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC
Q 016730 176 PQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (384)
Q Consensus 176 ~~~g~~VLD~cag-pGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~ 238 (384)
..||++|-=.|+| -|..+..+|..|+ .+|+++|.+.+.- ++.++++|.+.......|.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kk---eea~~~LGAd~fv~~~~d~ 237 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKK---EEAIKSLGADVFVDSTEDP 237 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhH---HHHHHhcCcceeEEecCCH
Confidence 5588886555543 6888888999986 5899999986332 3446778988755543343
No 425
>PRK08278 short chain dehydrogenase; Provisional
Probab=79.06 E-value=31 Score=32.47 Aligned_cols=126 Identities=10% Similarity=0.052 Sum_probs=67.4
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHH-------HHHHHHHHHHHcCCceEEEEecCCCCcccc---c-
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKAS-------RLKSLTANLHRMGVTNTIVCNYDGNELPKV---L- 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~-------rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~- 245 (384)
.|.+|| +..|.|+.+.+++..+. ....|++++.+.. .++.+.+.+...|. ++.++..|..+.... +
T Consensus 5 ~~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHH
Confidence 355677 44456778888887554 3347888887654 24444444554443 466667888765321 1
Q ss_pred ----CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 246 ----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 246 ----~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
..+.+|.|+..+.....+.+. ..+.++... ...-...+++.+...+.. +.+|.+++.+..
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~-------~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~~~g~iv~iss~ 150 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTE-------DTPMKRFDLMQQINVRGTFLVSQACLPHLKK--SENPHILTLSPP 150 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcc-------cCCHHHHHHHHHHhchHHHHHHHHHHHHHHh--cCCCEEEEECCc
Confidence 114799999977543322211 122232221 222234455555554410 235788776643
No 426
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=78.98 E-value=14 Score=36.29 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCC-c-eEEEEeCCHHHHHHHHHHHHHcCCceE
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNT-G-LIYANEMKASRLKSLTANLHRMGVTNT 231 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~-g-~V~a~D~~~~rl~~l~~n~~r~g~~~v 231 (384)
++|++||=.+ .|+.+..++++.... . .|++++.++++...+ +.+|++.+
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~----~~~g~~~v 226 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA----REFGADAT 226 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCCeE
Confidence 4788888764 466665554443322 2 799999998887665 35677543
No 427
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.39 E-value=28 Score=34.03 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=45.5
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCCCCCEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDRVL 254 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~~fD~Vl 254 (384)
|.+||=.| |+|+.+.+++..+-. ...|++++.+..........+. .+ .++.++.+|.++... ......+|.|+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 56777554 678888888876643 3489999877654332222221 11 245566788876432 12223579888
Q ss_pred EcCC
Q 016730 255 LDAP 258 (384)
Q Consensus 255 lDaP 258 (384)
.-+.
T Consensus 81 h~A~ 84 (349)
T TIGR02622 81 HLAA 84 (349)
T ss_pred ECCc
Confidence 7554
No 428
>PRK07775 short chain dehydrogenase; Provisional
Probab=78.35 E-value=59 Score=30.48 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred ceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTV 250 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~f 250 (384)
..||=.| |.|+.+.+++..+- ....|++.+.+..++..+...+...|. .+.+...|..+.... . ..+..
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTDPDSVKSFVAQAEEALGEI 88 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 3566444 56888888887554 334788888888887777766666553 466777888764321 0 11468
Q ss_pred CEEEEcCC
Q 016730 251 DRVLLDAP 258 (384)
Q Consensus 251 D~VllDaP 258 (384)
|.|+..+.
T Consensus 89 d~vi~~Ag 96 (274)
T PRK07775 89 EVLVSGAG 96 (274)
T ss_pred CEEEECCC
Confidence 99998764
No 429
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.31 E-value=56 Score=30.13 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCCE
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD~ 252 (384)
.|.+||=.| |.|+.+..++..+.. ...|++++.++.+++.+...+....-..+.+...|..+.... . ..+..|.
T Consensus 6 ~~k~vlItG-~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITG-ASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 356777666 456677777765433 348999999998888877777654333466677887764211 0 1257899
Q ss_pred EEEcC
Q 016730 253 VLLDA 257 (384)
Q Consensus 253 VllDa 257 (384)
++..+
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88754
No 430
>PRK08862 short chain dehydrogenase; Provisional
Probab=78.08 E-value=45 Score=30.60 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=50.5
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
.|..+|=.|++.| .+..++..+ ..+..|+.++.++++++.+.+.++..|.+ +.....|..+.... + ..+
T Consensus 4 ~~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN-VYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC-eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3667776666654 555555544 34458999999999998888878776654 44455676654211 1 114
Q ss_pred -CCCEEEEcC
Q 016730 249 -TVDRVLLDA 257 (384)
Q Consensus 249 -~fD~VllDa 257 (384)
.+|.++.++
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 799988876
No 431
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=78.01 E-value=53 Score=30.22 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.+.+||=.|+ .|+.+.+++..+.. ...|+.++.+..+++.+...++..+. .+.++..|..+..... ..+
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3677887774 56667777765433 34788899998888887777766654 3566678887643210 114
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886653
No 432
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.54 E-value=39 Score=32.69 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=59.9
Q ss_pred CCceEEEeccCCChHHHHHHH-HccCCceEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCcccc--------cCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAA-LMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKV--------LGL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~-~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~-v~~~~~D~~~~~~~--------~~~ 247 (384)
.|..||=-||.+|- +.++|- +.+....++-+-...+|++.+.+.++..+-.+ +.++..|..+.... ...
T Consensus 11 ~~kvVvITGASsGI-G~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGI-GEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 47788888888774 444554 33333467777889999999988888887766 88889999875321 134
Q ss_pred CCCCEEEEcCCCCC
Q 016730 248 NTVDRVLLDAPCSG 261 (384)
Q Consensus 248 ~~fD~VllDaPCSg 261 (384)
+..|..+.+|--+-
T Consensus 90 g~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL 103 (282)
T ss_pred CCCCEEEecCcccc
Confidence 78999999986554
No 433
>PRK12746 short chain dehydrogenase; Provisional
Probab=77.37 E-value=52 Score=30.13 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=63.8
Q ss_pred CceEEEeccCCChHHHHHHHHccCCc-eEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-----------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL----------- 245 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~----------- 245 (384)
+.+||=.| |+|+.+.+++..+-..| .|+.. ..+...++.+...+...+ ..+.++..|..+.....
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 45677555 57888888888664444 45443 456655555544444333 23667788888753210
Q ss_pred ---CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHH----HHHHHHHHHHHHHHHchhccCCCCcEEEEEec
Q 016730 246 ---GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (384)
Q Consensus 246 ---~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~----~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTC 313 (384)
.....|.|+..|--+..|-+. ..+.+.+. ........+++.+.+.+ +..|.+|+.+.
T Consensus 84 ~~~~~~~id~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~~v~~sS 147 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIE-------NTTEEIFDEIMAVNIKAPFFLIQQTLPLL----RAEGRVINISS 147 (254)
T ss_pred cccCCCCccEEEECCCCCCCCChh-------hCCHHHHHHHHHHHhHHHHHHHHHHHHHh----hcCCEEEEECC
Confidence 013589998865211111111 11222222 22333344556666554 55678777643
No 434
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=77.32 E-value=17 Score=36.60 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=58.0
Q ss_pred cCCCCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLG 246 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~ 246 (384)
..+++|++||=.++ |+.+.. +|..++ ...|++.|.+++|++.++ ++|+.. +.......+ .....
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~----~~Ga~~--v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 181 AGVGPGSTVYIAGA--GPVGLAAAASAQLLG-AAVVIVGDLNPARLAQAR----SFGCET--VDLSKDATLPEQIEQILG 251 (393)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHH----HcCCeE--EecCCcccHHHHHHHHcC
Confidence 34678999886544 555444 444443 235677899998888775 467742 221111111 11122
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHH-HHHHHHHHchhccCCCCcEEEEE
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK-QLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~-~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
...+|.|+- |+|.-.-. ++ .... ..+. ..+..+++++ ++||++++.
T Consensus 252 ~~g~Dvvid---~~G~~~~~-~~---~~~~--------~~~~~~~~~~~~~~~----~~~G~i~~~ 298 (393)
T TIGR02819 252 EPEVDCAVD---CVGFEARG-HG---HDGK--------KEAPATVLNSLMEVT----RVGGAIGIP 298 (393)
T ss_pred CCCCcEEEE---CCCCcccc-cc---cccc--------ccchHHHHHHHHHHh----hCCCEEEEe
Confidence 346898864 55531000 00 0000 0022 3567788886 999999864
No 435
>PRK12743 oxidoreductase; Provisional
Probab=77.19 E-value=52 Score=30.34 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=49.0
Q ss_pred CceEEEeccCCChHHHHHHHHccCC-ceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+.+||=.|+ +|+.+.++++.+-.. ..|+.+ ..+...++.+...++..|. ++.++..|..+.... . ...
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346776664 566788888765433 367665 4566777777777777664 466777888764221 0 114
Q ss_pred CCCEEEEcC
Q 016730 249 TVDRVLLDA 257 (384)
Q Consensus 249 ~fD~VllDa 257 (384)
..|.|+..+
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 689999865
No 436
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.10 E-value=37 Score=31.75 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCceEEEecc-CCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAA-APGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~ca-gpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=.|+ |++|.+..++..+.. ...|+.++......+.+.+..++++- ..++..|..+.... . ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS--DLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC--cceeeccCCCHHHHHHHHHHHHHHh
Confidence 4677888887 577777777765543 34677665442222333333333442 23456788764211 0 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++.+|.
T Consensus 83 g~iD~lvnnAG 93 (260)
T PRK06997 83 DGLDGLVHSIG 93 (260)
T ss_pred CCCcEEEEccc
Confidence 67999998763
No 437
>PRK06198 short chain dehydrogenase; Provisional
Probab=76.95 E-value=60 Score=29.83 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=69.0
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ce-EEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GL-IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.+.+||=.| |+|+.+.++++.+... .. |+.++.+......+...+...+. .+.++..|..+.... + ..
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 456777555 5677888887765332 35 99999988777666656654443 455667888764221 0 01
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHH----HHHHHHHHHHHHHHHchhccCCCCcEEEEEecc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~----~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCS 314 (384)
+.+|.|+..+-.+..+.+ +..+.++.. ....-...+++.+++.+.. -...|.+|+.++.
T Consensus 83 g~id~li~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~g~iv~~ss~ 145 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTI-------LDTSPELFDRHFAVNVRAPFFLMQEAIKLMRR-RKAEGTIVNIGSM 145 (260)
T ss_pred CCCCEEEECCCcCCCCCh-------hhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCCEEEEECCc
Confidence 368999886643322211 112222221 2222334455566555411 0224788877654
No 438
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.94 E-value=16 Score=35.64 Aligned_cols=96 Identities=23% Similarity=0.294 Sum_probs=55.7
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCc----ccccCC
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGL 247 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~----~~~~~~ 247 (384)
..++|++||=.++ |+.+. .+|+.++ ...|+++|.++++.+.++ .+|.+.+ +..+...+ .....+
T Consensus 163 ~~~~g~~vlI~g~--g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~--v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 163 NIKLGDTVAVFGI--GPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAK----EYGATDI--VDYKNGDVVEQILKLTGG 233 (351)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCceE--ecCCCCCHHHHHHHHhCC
Confidence 4668899887754 44444 3444442 236999999998876665 4776432 22211111 111223
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
..+|.|+- |+|.. ..+..+++.+ +++|+++..
T Consensus 234 ~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVII---AGGGQ-------------------------DTFEQALKVL----KPGGTISNV 265 (351)
T ss_pred CCCcEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEe
Confidence 56998864 43321 2456677775 899998753
No 439
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=76.90 E-value=54 Score=35.72 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r-~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|.+||=. .|.|+.+.+++..+. ....|+++|.+...++.+.+.+.. .+...+..+..|.++.... + ..
T Consensus 413 ~gkvvLVT-GasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVT-GGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEe-CCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 35667744 456777888777553 345899999999888777665542 3444566778888764321 1 12
Q ss_pred CCCCEEEEcCCC
Q 016730 248 NTVDRVLLDAPC 259 (384)
Q Consensus 248 ~~fD~VllDaPC 259 (384)
+.+|.|+..+..
T Consensus 492 g~iDilV~nAG~ 503 (676)
T TIGR02632 492 GGVDIVVNNAGI 503 (676)
T ss_pred CCCcEEEECCCC
Confidence 478999887653
No 440
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.85 E-value=72 Score=30.80 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCC----------HHHHHHHHHHHHHcCCceEEEEecCCCCccccc-
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK----------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~----------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~- 245 (384)
.|.+||-.|++ +|.+..+++.+. ....|+.++.+ +++++.+.+.++..|. .+.++..|..+.....
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH
Confidence 46678877755 556777776553 33578888876 3466666666666654 3556678887642210
Q ss_pred -------CCCCCCEEEEcC
Q 016730 246 -------GLNTVDRVLLDA 257 (384)
Q Consensus 246 -------~~~~fD~VllDa 257 (384)
..+..|.++.++
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 125789988876
No 441
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.84 E-value=61 Score=29.75 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=53.0
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.++|=.| |+||.+.+++..+. ....|+..+.+++.++.+.+.++..|. ++.++..|..+.... . ..+.
T Consensus 6 ~k~~lItG-as~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITG-ASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 55677444 45667777776543 335899999999988888887777664 466667888764211 0 1147
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.++..+..
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 8999987753
No 442
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=76.83 E-value=5.5 Score=34.03 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=26.8
Q ss_pred EeccCCC--hHHHHHH-HHccCCceEEEEeCCHHHHHHHHHH
Q 016730 184 DMAAAPG--GKTTYIA-ALMKNTGLIYANEMKASRLKSLTAN 222 (384)
Q Consensus 184 D~cagpG--gkt~~la-~~~~~~g~V~a~D~~~~rl~~l~~n 222 (384)
|+||.-| ..+.++. +.....++|+++|.++..++.++.|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 2444568999999999999999999
No 443
>PLN00198 anthocyanidin reductase; Provisional
Probab=76.74 E-value=44 Score=32.43 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=47.7
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCccccc-CCCCC
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL-GLNTV 250 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~-g~~~v~~~~~D~~~~~~~~-~~~~f 250 (384)
|-|..+.+|| +..|+|..+.+++..+-.. ..|+++..+......... +..+ ...++.++.+|.++..... .-..+
T Consensus 4 ~~~~~~~~vl-ItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 4 LTPTGKKTAC-VIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred ccCCCCCeEE-EECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHhcC
Confidence 3455577777 5556699999998866443 378777666543332221 1111 1235777788887653211 01358
Q ss_pred CEEEEcC
Q 016730 251 DRVLLDA 257 (384)
Q Consensus 251 D~VllDa 257 (384)
|.|+--|
T Consensus 82 d~vih~A 88 (338)
T PLN00198 82 DLVFHVA 88 (338)
T ss_pred CEEEEeC
Confidence 9998755
No 444
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.52 E-value=48 Score=30.17 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc-----cc----c--
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-----KV----L-- 245 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~-----~~----~-- 245 (384)
+|.+||=.| |.|+.+.+++..+.. ...|++++.++.+++.+...+...+-..+.+...|..+.. .. .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 456788776 567777777765543 3589999999998888877776655333444455654311 00 0
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
-.+.+|.|+..+-
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0146899998764
No 445
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=76.40 E-value=45 Score=31.82 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=47.4
Q ss_pred CceEEEeccCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCccccc-CCCCCCEEEE
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL-GLNTVDRVLL 255 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~-~~v~~~~~D~~~~~~~~-~~~~fD~Vll 255 (384)
|.+|| +..|+|..+.+++..+-..| .|++++.+..............+. .++.++.+|..+...+. --..+|.|+.
T Consensus 4 ~~~il-VtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVC-VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEE-EECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45676 44468999999887664434 788887765443322222111121 35778888887653221 0145899998
Q ss_pred cCCC
Q 016730 256 DAPC 259 (384)
Q Consensus 256 DaPC 259 (384)
-+..
T Consensus 83 ~A~~ 86 (322)
T PLN02662 83 TASP 86 (322)
T ss_pred eCCc
Confidence 7754
No 446
>PRK06101 short chain dehydrogenase; Provisional
Probab=76.33 E-value=46 Score=30.44 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=44.5
Q ss_pred EEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---cC--CCCCCEEEE
Q 016730 182 VIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG--LNTVDRVLL 255 (384)
Q Consensus 182 VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~~--~~~fD~Vll 255 (384)
|| +..|+||.+.+++..+.. ...|++++.++++++.+.+. + .++.++..|..+.... .. ....|.++.
T Consensus 4 vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 4 VL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred EE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 44 455678888888876643 35899999998877665432 1 3456667888765321 10 123577777
Q ss_pred cCC
Q 016730 256 DAP 258 (384)
Q Consensus 256 DaP 258 (384)
++.
T Consensus 78 ~ag 80 (240)
T PRK06101 78 NAG 80 (240)
T ss_pred cCc
Confidence 654
No 447
>PRK07985 oxidoreductase; Provisional
Probab=76.22 E-value=60 Score=30.98 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCceEEEeccCCChHHHHHHHHccC-CceEEEEeCC--HHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LG 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~--~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~ 246 (384)
.|.+||=.|+ .||.+.+++..+.. ...|+.++.+ ...++.+.+.+...|. ++.++..|..+.... ..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4667887775 56677777775543 3467777653 3456666666655554 456667888764211 01
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+..|.++..+.-+. ..... ...+.++..... .--..+++.+...+ +.+|.+|+.+
T Consensus 126 ~g~id~lv~~Ag~~~--~~~~~----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m----~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQV--AIPDI----ADLTSEQFQKTFAINVFALFWLTQEAIPLL----PKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCc--CCCCh----hhCCHHHHHHHHHHHhHHHHHHHHHHHHhh----hcCCEEEEEC
Confidence 256899888653110 00111 112333333222 22234556666654 6788888754
No 448
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.01 E-value=23 Score=32.35 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHH
Q 016730 177 QEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (384)
Q Consensus 177 ~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~ 220 (384)
.+|++||..++|+ |..+..++...+ ..|++++.++.+.+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 6899999998876 444445555543 58999999988877664
No 449
>PRK09072 short chain dehydrogenase; Provisional
Probab=75.98 E-value=44 Score=30.98 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=49.5
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc-------CCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTV 250 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------~~~~f 250 (384)
+.+||=.| |+|+.+..++..+. .+..|++++.+++.++.+...+ ..+ .++.++..|..+..... ..+.+
T Consensus 5 ~~~vlItG-~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 5 DKRVLLTG-ASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 55666554 45677777776543 3358999999998887776555 223 35667778887643210 12468
Q ss_pred CEEEEcCC
Q 016730 251 DRVLLDAP 258 (384)
Q Consensus 251 D~VllDaP 258 (384)
|.|+..+.
T Consensus 82 d~lv~~ag 89 (263)
T PRK09072 82 NVLINNAG 89 (263)
T ss_pred CEEEECCC
Confidence 99998654
No 450
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=75.94 E-value=17 Score=35.08 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=27.4
Q ss_pred CCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHH
Q 016730 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLT 220 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~ 220 (384)
..++|++||-.++ |+.+. .+|..++ ...|++++.+..+.+.++
T Consensus 164 ~~~~~~~VlI~g~--g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 164 GIKPGSTVAVIGA--GPVGLCAVAGARLLG-AARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHH
Confidence 4568999998543 54444 4444442 136888888887776554
No 451
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=75.92 E-value=30 Score=31.85 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=43.7
Q ss_pred ccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCCCEEEEc
Q 016730 186 AAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVDRVLLD 256 (384)
Q Consensus 186 cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~fD~VllD 256 (384)
-.|+|+.+.+++..+.. +..|+.++.++.++..+...+ +. .+.++..|..+.... + ..+..|.|+..
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---GD-NLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---cc-ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 35667778888876543 348999999988776665443 32 466667888764221 1 11468998875
Q ss_pred C
Q 016730 257 A 257 (384)
Q Consensus 257 a 257 (384)
+
T Consensus 82 a 82 (248)
T PRK10538 82 A 82 (248)
T ss_pred C
Confidence 4
No 452
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.91 E-value=37 Score=31.74 Aligned_cols=79 Identities=6% Similarity=0.027 Sum_probs=46.5
Q ss_pred CCceEEEecc-CCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CC
Q 016730 178 EKERVIDMAA-APGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (384)
Q Consensus 178 ~g~~VLD~ca-gpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~ 247 (384)
.|..||=.|+ |.+|.+..++..+.. ...|+..+.+....+.+++.....|- ...+..|..+.... + ..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDS--ELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC--ceEEECCCCCHHHHHHHHHHHHHHh
Confidence 3667887787 467888888876543 34777776554333334433333332 34557788764221 0 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+.+|.++.++-
T Consensus 83 g~iD~lVnnAG 93 (261)
T PRK08690 83 DGLDGLVHSIG 93 (261)
T ss_pred CCCcEEEECCc
Confidence 57999998763
No 453
>PRK06500 short chain dehydrogenase; Provisional
Probab=75.76 E-value=60 Score=29.49 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=45.9
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~ 249 (384)
|.+|| +..|.|+.+.++++.+.. ...|++++.+...++.+.+ ++|. ++.++..|..+.... ...+.
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTAL-ITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGE-SALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCC-ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 55666 445567778888776543 3489999988776655443 3343 355666777654211 01146
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
+|.|+..+.
T Consensus 81 id~vi~~ag 89 (249)
T PRK06500 81 LDAVFINAG 89 (249)
T ss_pred CCEEEECCC
Confidence 899998764
No 454
>PRK05650 short chain dehydrogenase; Provisional
Probab=75.62 E-value=66 Score=29.94 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=50.2
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~fD 251 (384)
+||=.| |+|+.+.+++..+.. ...|+..+.+..+++.+...+...|. ++.++..|..+.... . ..+.+|
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455344 567777777765533 34899999999888887777766554 456667888764321 0 114689
Q ss_pred EEEEcCC
Q 016730 252 RVLLDAP 258 (384)
Q Consensus 252 ~VllDaP 258 (384)
.|+..+.
T Consensus 80 ~lI~~ag 86 (270)
T PRK05650 80 VIVNNAG 86 (270)
T ss_pred EEEECCC
Confidence 9998653
No 455
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.58 E-value=40 Score=30.51 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=51.7
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~-D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+.+||=.| |+|+.+.+++..+. ....|+.+ +.++.....+...+...+ ..+.+...|..+.... . ...
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 34566555 56888888877543 23478887 988888877777766544 3467778888765321 1 013
Q ss_pred CCCEEEEcCCC
Q 016730 249 TVDRVLLDAPC 259 (384)
Q Consensus 249 ~fD~VllDaPC 259 (384)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 68999987653
No 456
>PRK07806 short chain dehydrogenase; Provisional
Probab=75.53 E-value=64 Score=29.37 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=64.9
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCH-HHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~-~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
|.+||-.| |+|+.+.+++..+.. ...|++++.+. .+++.+...++..+. ++.++..|..+.... . ..+
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56777655 556778887775533 34788877654 455555555555443 466677888875321 1 114
Q ss_pred CCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 249 ~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+|.|+..+.-+.. ...+++..+. ....-...+++.+.+.+ +.+|++|+.+
T Consensus 84 ~~d~vi~~ag~~~~--~~~~~~~~~~-------vn~~~~~~l~~~~~~~~----~~~~~iv~is 134 (248)
T PRK07806 84 GLDALVLNASGGME--SGMDEDYAMR-------LNRDAQRNLARAALPLM----PAGSRVVFVT 134 (248)
T ss_pred CCcEEEECCCCCCC--CCCCcceeeE-------eeeHHHHHHHHHHHhhc----cCCceEEEEe
Confidence 68999887632111 1111211111 11122345666676654 5567777664
No 457
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.48 E-value=64 Score=29.35 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=51.1
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~ 249 (384)
|.++|=.|| .|+.+.+++..+- ....|++++.+...+......+. .+ .++.+...|..+..... ....
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 556665554 6778888887543 33489999998887776666554 33 34677788887643210 1147
Q ss_pred CCEEEEcCCCC
Q 016730 250 VDRVLLDAPCS 260 (384)
Q Consensus 250 fD~VllDaPCS 260 (384)
+|.|+..+..+
T Consensus 82 id~vi~~ag~~ 92 (252)
T PRK06138 82 LDVLVNNAGFG 92 (252)
T ss_pred CCEEEECCCCC
Confidence 89999866543
No 458
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.40 E-value=51 Score=30.05 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~ 248 (384)
.|.+||=.|+ .|+.+.+++..+-.. ..|+.++.+. ...+.+.+...+. .+.++..|..+..... ..+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGR-RFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4667776666 466777777765443 4788888764 3445555555553 4667778887653211 114
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
..|.|+..+.
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 6899998664
No 459
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=75.38 E-value=47 Score=30.66 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=44.7
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
|..+|=.| |.|+.+..+++.+.. ...|+++|.+.. ....+.+..++. .+..+..|..+.... . ..+.
T Consensus 10 ~k~~lItG-~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTG-CDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGR-RFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 55666555 567778888876543 347888876542 333444454543 456667888763211 1 1146
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
.|.++..|
T Consensus 86 ~D~li~~A 93 (253)
T PRK08993 86 IDILVNNA 93 (253)
T ss_pred CCEEEECC
Confidence 89888765
No 460
>PRK08265 short chain dehydrogenase; Provisional
Probab=75.35 E-value=58 Score=30.24 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=47.2
Q ss_pred CceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=.| |+|+.+.+++..+. ....|+.++.+...++.+.+. ++ ..+.++..|..+.... + ..+.
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LG-ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC-CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 55777555 55667777776553 334899999988766655443 33 2466777888764221 0 1146
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
.|.++..+.
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 899988664
No 461
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.22 E-value=20 Score=35.34 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=34.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.++ |+.+..++++.+.. ..|+++|.++++++.++ .+|.+.
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~~ 234 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGATD 234 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCE
Confidence 34678999998764 55555444433222 26999999999987664 478754
No 462
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=75.03 E-value=18 Score=34.94 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=54.3
Q ss_pred hcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCcccccCCCCC
Q 016730 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~f 250 (384)
....++|++||-.++|. |..+..+|..++ ...|++++.++.+.+.++ .+|...+....... ..+.....+..|
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCCC
Confidence 34567899999885322 223334444442 123888888877766553 45664322211111 111112223459
Q ss_pred CEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEE
Q 016730 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (384)
Q Consensus 251 D~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYs 311 (384)
|.|+- |+|.+ ..+..+++.| +++|+++..
T Consensus 229 d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 257 (343)
T cd08236 229 DLVIE---AAGSP-------------------------ATIEQALALA----RPGGKVVLV 257 (343)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 99873 44332 1345667775 899987753
No 463
>PRK10083 putative oxidoreductase; Provisional
Probab=74.79 E-value=27 Score=33.69 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=33.8
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHcc---CCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..+++|++||=.++ |+.+..++++.+ +...++++|.++++.+.++ .+|++.
T Consensus 156 ~~~~~g~~vlI~g~--g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~----~~Ga~~ 209 (339)
T PRK10083 156 TGPTEQDVALIYGA--GPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK----ESGADW 209 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH----HhCCcE
Confidence 35678999987763 666555544432 2236888999998887664 467753
No 464
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.74 E-value=25 Score=35.59 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHH------------HHHc-CCceEEEEecCCCCcccccCCCCCCEE
Q 016730 188 APGGKTTYIAALMK-NTGLIYANEMKASRLKSLTAN------------LHRM-GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (384)
Q Consensus 188 gpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n------------~~r~-g~~~v~~~~~D~~~~~~~~~~~~fD~V 253 (384)
|.|..+..+|..+. .+..|+++|.++++++.+.+. +.+. ...++.+. .|.. ... ...|.|
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~---~~~--~~advv 80 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYE---DAI--RDADVI 80 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHH---HHH--hhCCEE
Confidence 44444454555443 334899999999999877532 1110 01112221 1211 111 468999
Q ss_pred EEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 254 llDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
++-.|..... ...||.. .+ . ..+...... +++|-.++. +.|+.|...+++...++++
T Consensus 81 ii~vpt~~~~--~~~~d~~------~v---~----~~~~~i~~~----l~~g~lvi~-~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 81 IICVPTPLKE--DGSPDLS------YV---E----SAAETIAKH----LRKGATVVL-ESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EEEeCCCCCC--CCCcChH------HH---H----HHHHHHHHh----cCCCCEEEE-eCcCCCCchHHHHHHHHHh
Confidence 9977642210 1122211 11 1 112222333 377766655 4488888888888777765
No 465
>PRK07024 short chain dehydrogenase; Provisional
Probab=74.69 E-value=61 Score=29.92 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=49.5
Q ss_pred ceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CCCCC
Q 016730 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (384)
Q Consensus 180 ~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~~~f 250 (384)
.+||=. .|+|+.+.+++..+.. ...|+.++.+.++++.+.+.+...+ ++.++..|..+..... ..+.+
T Consensus 3 ~~vlIt-Gas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFIT-GASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEE-cCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 355544 4577788888876543 3489999999888777665554333 5777788888743210 11458
Q ss_pred CEEEEcCC
Q 016730 251 DRVLLDAP 258 (384)
Q Consensus 251 D~VllDaP 258 (384)
|.++..+-
T Consensus 80 d~lv~~ag 87 (257)
T PRK07024 80 DVVIANAG 87 (257)
T ss_pred CEEEECCC
Confidence 99998653
No 466
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=74.63 E-value=79 Score=29.98 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=51.1
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~ 249 (384)
+..||=-||++| .+..+++.+.. ..+|+......+||+.+...+.. ..+.....|.++.... ...+.
T Consensus 6 ~kv~lITGASSG-iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 6 GKVALITGASSG-IGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CcEEEEecCcch-HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 455665666655 56666665543 34899999999999998877765 4566777888775220 12268
Q ss_pred CCEEEEcC
Q 016730 250 VDRVLLDA 257 (384)
Q Consensus 250 fD~VllDa 257 (384)
+|..+.+|
T Consensus 82 iDiLvNNA 89 (246)
T COG4221 82 IDILVNNA 89 (246)
T ss_pred ccEEEecC
Confidence 99999887
No 467
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=74.40 E-value=20 Score=34.67 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 175 ~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
...+|++||-.++|. |..+..++..++ ...|++++.++++.+.+ +.+|.+.
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~----~~~g~~~ 213 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVA----RAMGADE 213 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHH----HHcCCCE
Confidence 334789999865432 223344445442 12689999888877644 3356643
No 468
>PLN02702 L-idonate 5-dehydrogenase
Probab=74.11 E-value=27 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=32.4
Q ss_pred cCCCCCceEEEeccCCChHHH---HHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEE
Q 016730 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~---~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~ 232 (384)
....+|++||=.+ .|+.+. .++..++ ...|+++|.++.+.+.+ +.+|++.+.
T Consensus 177 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~g~~~~~ 231 (364)
T PLN02702 177 ANIGPETNVLVMG--AGPIGLVTMLAARAFG-APRIVIVDVDDERLSVA----KQLGADEIV 231 (364)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHH----HHhCCCEEE
Confidence 4466788888774 455444 4444432 23588999998887654 446775443
No 469
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.94 E-value=5.6 Score=32.22 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=45.7
Q ss_pred cCCChHHHHHHHHccCCc-eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--CCCCCCEEEEcCC
Q 016730 187 AAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAP 258 (384)
Q Consensus 187 agpGgkt~~la~~~~~~g-~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--~~~~fD~VllDaP 258 (384)
+|-|..+..+++.+...+ .|+.+|.++++++.+++ .| +.++.+|+.+...+. .-...|.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG---VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc---cccccccchhhhHHhhcCccccCEEEEccC
Confidence 567778888888776666 79999999999877654 33 457789998763321 2257899998655
No 470
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.74 E-value=30 Score=33.12 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=53.0
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccccCCCCCCE
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~fD~ 252 (384)
..+++|++||=.+ .|+.+..++++... ...|++++.+.++.+.+ +.+|++.+. ..+. .+ ...+|.
T Consensus 163 ~~~~~~~~vlV~g--~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~----~~~g~~~~~--~~~~--~~----~~~vD~ 228 (329)
T cd08298 163 AGLKPGQRLGLYG--FGASAHLALQIARYQGAEVFAFTRSGEHQELA----RELGADWAG--DSDD--LP----PEPLDA 228 (329)
T ss_pred hCCCCCCEEEEEC--CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHH----HHhCCcEEe--ccCc--cC----CCcccE
Confidence 3467788887664 45554443333222 24788888888766555 346764221 1111 11 246888
Q ss_pred EEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 253 VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
++. |++.+ ..+..+++.+ +++|+++...
T Consensus 229 vi~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~g 256 (329)
T cd08298 229 AII---FAPVG-------------------------ALVPAALRAV----KKGGRVVLAG 256 (329)
T ss_pred EEE---cCCcH-------------------------HHHHHHHHHh----hcCCEEEEEc
Confidence 764 32221 2456677775 9999988543
No 471
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.64 E-value=85 Score=30.25 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=52.3
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCccccc--------CC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g-~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
.|.+||=.| |+||.+..++..+. ...+|+.+..+.++.+.+.+.+.... -.++.++..|..+..... ..
T Consensus 13 ~gk~~lITG-as~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTG-ASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 356666444 56777887776543 34588889999888887777665432 234677788887753210 12
Q ss_pred CCCCEEEEcCC
Q 016730 248 NTVDRVLLDAP 258 (384)
Q Consensus 248 ~~fD~VllDaP 258 (384)
+..|.++.+|.
T Consensus 92 ~~iD~li~nAG 102 (313)
T PRK05854 92 RPIHLLINNAG 102 (313)
T ss_pred CCccEEEECCc
Confidence 56899998763
No 472
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.41 E-value=7.7 Score=38.14 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=43.8
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
+....+++||+.|-=.|.|.=|.+..+.....+.++|+++|+++++.+.++ .+|.+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaTe 240 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGATE 240 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcce
Confidence 344557889999888887776666666666667789999999999998775 578753
No 473
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=73.33 E-value=28 Score=32.50 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=45.6
Q ss_pred CCceEEEeccC-CChHHHHHHHHccCCc-eEEEEeCCH--HHHHHHHHHHHHcCCceEEEEecCCCCccccc--------
Q 016730 178 EKERVIDMAAA-PGGKTTYIAALMKNTG-LIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (384)
Q Consensus 178 ~g~~VLD~cag-pGgkt~~la~~~~~~g-~V~a~D~~~--~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------- 245 (384)
.|.+||=.||+ ++|.+..++..+...| .|+..+.+. .|.+...+.+...+ ..+.++..|..+.....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-NPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-CcceEeecCcCCHHHHHHHHHHHHH
Confidence 46788888885 6888888887664333 666554432 23333222233222 23456678887642210
Q ss_pred CCCCCCEEEEcCC
Q 016730 246 GLNTVDRVLLDAP 258 (384)
Q Consensus 246 ~~~~fD~VllDaP 258 (384)
..+.+|.++.++.
T Consensus 84 ~~g~iD~lv~nag 96 (258)
T PRK07370 84 KWGKLDILVHCLA 96 (258)
T ss_pred HcCCCCEEEEccc
Confidence 1257999888664
No 474
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.29 E-value=18 Score=34.77 Aligned_cols=41 Identities=10% Similarity=-0.069 Sum_probs=26.0
Q ss_pred CCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHH
Q 016730 177 QEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLT 220 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~ 220 (384)
.+|++||=+|+ |+.+.. +|..++ ...|+++|.++.|++.+.
T Consensus 143 ~~~~~vlV~G~--G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGH--GTLGRLLARLTKAAG-GSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhh
Confidence 35778887754 555444 444443 235778899998877654
No 475
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.24 E-value=21 Score=35.31 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=29.0
Q ss_pred CCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 176 PQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 176 ~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
.++|++||=.|+ |+.+..+.++.+.. ..|++++.+..+... .++++|.+.
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~---~~~~~Ga~~ 231 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFGLKVTVISSSSNKEDE---AINRLGADS 231 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCcchhhh---HHHhCCCcE
Confidence 468999987655 55555444433221 368888877655432 234578753
No 476
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.17 E-value=19 Score=34.64 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=42.5
Q ss_pred hcCCCCCceEEEeccCCChHHHHHHHHccCCc-e-EEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcc--cccCCC
Q 016730 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-L-IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLN 248 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g-~-V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~--~~~~~~ 248 (384)
....++|++||-.+ .|+.+..++++....| . |++++.++++...++ ++|.. .++..+..... ......
T Consensus 154 ~~~~~~g~~vlI~g--~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 154 LLGIKPGDSVLVFG--AGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK----KLGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCCe--EEecCCCCCHHHHHHhcCC
Confidence 34567899999985 3555555444443333 3 888999988876653 45664 23222222110 111235
Q ss_pred CCCEEEE
Q 016730 249 TVDRVLL 255 (384)
Q Consensus 249 ~fD~Vll 255 (384)
.+|.|+-
T Consensus 226 ~vd~v~~ 232 (334)
T cd08234 226 GFDVVIE 232 (334)
T ss_pred CCcEEEE
Confidence 6999974
No 477
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.13 E-value=73 Score=29.30 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred CceEEEeccCC-ChHHHHHHHHccCC-ceEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCcccc
Q 016730 179 KERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (384)
Q Consensus 179 g~~VLD~cagp-Ggkt~~la~~~~~~-g~V~a~D~~------------~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~ 244 (384)
|..||=.|++. ||.+.+++..+... ..|++++.+ ..... +...+...+. .+.++..|..+....
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV-RCEHMEIDLSQPYAP 82 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 56788788764 68888888766433 478888765 22322 4444444443 467778888764321
Q ss_pred -------c-CCCCCCEEEEcC
Q 016730 245 -------L-GLNTVDRVLLDA 257 (384)
Q Consensus 245 -------~-~~~~fD~VllDa 257 (384)
. ..+.+|.|+..+
T Consensus 83 ~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECC
Confidence 0 114689888765
No 478
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.02 E-value=19 Score=34.84 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=32.2
Q ss_pred cCCCCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 174 L~~~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
+.+.+|++||=.+ +|+.+..+.++.... ..|++++.++++++.++ .+|++
T Consensus 159 ~~~~~~~~vlV~g--~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~----~~g~~ 209 (333)
T cd08296 159 SGAKPGDLVAVQG--IGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR----KLGAH 209 (333)
T ss_pred cCCCCCCEEEEEC--CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH----HcCCc
Confidence 3567888988776 355555444433322 37899999988877663 46764
No 479
>PRK05693 short chain dehydrogenase; Provisional
Probab=72.83 E-value=39 Score=31.58 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=43.6
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCCCC
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNTVD 251 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~fD 251 (384)
+|| +..|+|+.+.++++.+.. +..|++++.+...++.+.. .+ +.++..|..+.... ...+.+|
T Consensus 3 ~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~---~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 3 VVL-ITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----AG---FTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred EEE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----CC---CeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 345 444678888888876543 3489999998877655432 23 34556676653211 0125789
Q ss_pred EEEEcCCC
Q 016730 252 RVLLDAPC 259 (384)
Q Consensus 252 ~VllDaPC 259 (384)
.|+..+-.
T Consensus 75 ~vi~~ag~ 82 (274)
T PRK05693 75 VLINNAGY 82 (274)
T ss_pred EEEECCCC
Confidence 99986643
No 480
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=72.54 E-value=14 Score=33.94 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=63.7
Q ss_pred CChHHHHHHHHcc-CCceEEEEeCCHHHHHH-HHHHHHHcCCceEEEEecCCCCccccc--------CC-CCCCEEEEcC
Q 016730 189 PGGKTTYIAALMK-NTGLIYANEMKASRLKS-LTANLHRMGVTNTIVCNYDGNELPKVL--------GL-NTVDRVLLDA 257 (384)
Q Consensus 189 pGgkt~~la~~~~-~~g~V~a~D~~~~rl~~-l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~-~~fD~VllDa 257 (384)
++|.+..+++.+. ....|+.++.+.+.++. +.+..+..+.. ++..|..+..... .. +.+|.++..+
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a 81 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSDEESVEALFDEAVERFGGRIDILVNNA 81 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEE
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcchHHHHHHHHHHHhhcCCCeEEEEecc
Confidence 5677788887654 34689999999998644 44444556643 4678887642110 12 6789988866
Q ss_pred CCCCCCcCCCCchhhccCCHHHH----HHHHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 258 PCSGTGVISKDESVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 258 PCSg~G~~~r~p~~~~~~~~~~i----~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.-+...... .| .+..+.++. .........+.+.+...+ +++|.+++.+
T Consensus 82 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gsii~is 133 (241)
T PF13561_consen 82 GISPPSNVE-KP--LLDLSEEDWDKTFDINVFSPFLLAQAALPLM----KKGGSIINIS 133 (241)
T ss_dssp ESCTGGGTS-SS--GGGSHHHHHHHHHHHHTHHHHHHHHHHHHHH----HHEEEEEEEE
T ss_pred cccccccCC-CC--hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCccccc
Confidence 422211000 11 011122222 223334445666666654 7888888665
No 481
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.41 E-value=19 Score=35.98 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCCHHH-HHHHHHHHHHcCCce
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASR-LKSLTANLHRMGVTN 230 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~~~r-l~~l~~n~~r~g~~~ 230 (384)
++|++||=.|+ |+.+..++++.+.. ..|++++.+.++ .+. ++.+|.+.
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~----a~~lGa~~ 226 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKAFGLRVTVISRSSEKEREA----IDRLGADS 226 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHHcCCeEEEEeCChHHhHHH----HHhCCCcE
Confidence 57899887654 55555444433222 368888877543 333 34578754
No 482
>PRK07041 short chain dehydrogenase; Provisional
Probab=72.28 E-value=74 Score=28.58 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=45.4
Q ss_pred cCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-CCCCCCEEEEcCCC
Q 016730 187 AAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDRVLLDAPC 259 (384)
Q Consensus 187 agpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-~~~~fD~VllDaPC 259 (384)
.|+|+.+..++..+- ....|++++.++.+++.+...++. + .++.++..|..+.... + ..+.+|.++..+..
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 466777777776553 335899999998887776655542 3 2466777888764321 1 11468999886643
No 483
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=71.89 E-value=29 Score=34.21 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCceEEEeccCCChHHHH---HHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 177 QEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~---la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
++|++||=.+ .|+.+.. +|..++ ..|++++.++++...+ ++++|.+
T Consensus 179 ~~g~~vlV~G--~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~---~~~~Ga~ 227 (357)
T PLN02514 179 QSGLRGGILG--LGGVGHMGVKIAKAMG--HHVTVISSSDKKREEA---LEHLGAD 227 (357)
T ss_pred CCCCeEEEEc--ccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH---HHhcCCc
Confidence 5789988764 4555544 444442 3688888877665443 3457875
No 484
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=71.63 E-value=9.6 Score=36.18 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCceEEEeccCCChHHHHHHHHcc----CCceEEEEeCC--------------------------HHHHHHHHHHHHHcC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMK--------------------------ASRLKSLTANLHRMG 227 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~----~~g~V~a~D~~--------------------------~~rl~~l~~n~~r~g 227 (384)
|| .|+++|+.-|+.++.++..+. ..-+|+++|.= .--++.+++|+.++|
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 55 689999999998877766542 12357777741 113566777888888
Q ss_pred C--ceEEEEecCCCCcccccCCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCC
Q 016730 228 V--TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (384)
Q Consensus 228 ~--~~v~~~~~D~~~~~~~~~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpG 305 (384)
+ .++.++.+...+-....+.+++-.+-+|.= +-.-=+..|...+..| .||
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D------------------------lYesT~~aLe~lyprl----~~G 205 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD------------------------LYESTKDALEFLYPRL----SPG 205 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---------------------------SHHHHHHHHHHHGGGE----EEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEecc------------------------chHHHHHHHHHHHhhc----CCC
Confidence 6 568888887643211122245666666531 1112245677778776 999
Q ss_pred cEEEEEeccCCccccHHHHHHHHhcCC
Q 016730 306 GYIVYSTCSIMVTENEAVIDYALKKRD 332 (384)
Q Consensus 306 G~lvYsTCSi~~~ENe~vv~~~l~~~~ 332 (384)
|+|+.=--.. +....+| +.|.++++
T Consensus 206 GiIi~DDY~~-~gcr~Av-deF~~~~g 230 (248)
T PF05711_consen 206 GIIIFDDYGH-PGCRKAV-DEFRAEHG 230 (248)
T ss_dssp EEEEESSTTT-HHHHHHH-HHHHHHTT
T ss_pred eEEEEeCCCC-hHHHHHH-HHHHHHcC
Confidence 9999755444 4444444 55555554
No 485
>PRK06128 oxidoreductase; Provisional
Probab=71.48 E-value=94 Score=29.59 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCceEEEeccCCChHHHHHHHHccCC-ceEEEEeCC--HHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----C
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----G 246 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~D~~--~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~ 246 (384)
.|.+||=.| |.|+.+.+++..+... ..|+....+ ....+.+.+.++..|. .+.++..|..+.... + .
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 466788666 5667777777765433 366665554 3345555556665554 355667888764211 0 1
Q ss_pred CCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHH----HHHHHHHHHHHHHHchhccCCCCcEEEEEe
Q 016730 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (384)
Q Consensus 247 ~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~----l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsT 312 (384)
.+..|.|+..+.-.. .. .+ ....+.++... ...-...+++.+...+ +++|.+|+.+
T Consensus 132 ~g~iD~lV~nAg~~~---~~-~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQT---AV-KD--IADITTEQFDATFKTNVYAMFWLCKAAIPHL----PPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccC---CC-CC--hhhCCHHHHHHHHHHHhHHHHHHHHHHHHhc----CcCCEEEEEC
Confidence 146899998774211 01 10 01112233222 2222334566666654 7788888754
No 486
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=71.25 E-value=4.1 Score=36.76 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=39.0
Q ss_pred CCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHh
Q 016730 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (384)
Q Consensus 250 fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~ 329 (384)
+|.|+.|||.-..--. ......................+..+.++| ||||.++. .|+-....+ ..+..+.+
T Consensus 1 VdliitDPPY~~~~~~---~~~~~~~~~~~~~~y~~~~~~~~~~~~rvL----k~~g~~~i-~~~~~~~~~-~~~~~~~~ 71 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY---NNYFDYGDNKNHEEYLEWMEEWLKECYRVL----KPGGSIFI-FIDDREIAG-FLFELALE 71 (231)
T ss_dssp EEEEEE---TSSSCS--------CSCHCCHHHHHHHHHHHHHHHHHHHE----EEEEEEEE-EE-CCEECT-HHHHHHHH
T ss_pred CCEEEECCCCCCCCCc---chhhhccCCCCHHHHHHHHHHHHHHHHhhc----CCCeeEEE-EecchhhhH-HHHHHHHH
Confidence 4899999997322210 000001111234455566677888888886 99999754 344433222 24445555
Q ss_pred cCC-CEEee
Q 016730 330 KRD-VKLVP 337 (384)
Q Consensus 330 ~~~-~~l~~ 337 (384)
..+ +.+..
T Consensus 72 ~~g~~~~~~ 80 (231)
T PF01555_consen 72 IFGGFFLRN 80 (231)
T ss_dssp HHTT-EEEE
T ss_pred Hhhhhheec
Confidence 555 66654
No 487
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=71.21 E-value=42 Score=31.97 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=70.4
Q ss_pred cCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-c-CCCCCCEEEEcCCCCCCCc
Q 016730 187 AAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRVLLDAPCSGTGV 264 (384)
Q Consensus 187 agpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-~-~~~~fD~VllDaPCSg~G~ 264 (384)
-.||+- ...++++...-++.++|+.++-...++.|+. +-.++.+...|+...... + +.++=-.||+|||.-
T Consensus 95 ~YpGSP-~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE---- 167 (279)
T COG2961 95 YYPGSP-LLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFE---- 167 (279)
T ss_pred cCCCCH-HHHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcc----
Confidence 455542 2233444455689999999999999999987 667899999998643111 1 124457899999941
Q ss_pred CCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCccccHHHHHHHHhc
Q 016730 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (384)
Q Consensus 265 ~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~ENe~vv~~~l~~ 330 (384)
.+.+...+.. -|+.+++.. ++|+. |-..|.-+-+.++.|++.
T Consensus 168 -----------~~~eY~rvv~----~l~~~~kRf-----~~g~y----aiWYPik~r~~~~~f~~~ 209 (279)
T COG2961 168 -----------LKDEYQRVVE----ALAEAYKRF-----ATGTY----AIWYPIKDRRQIRRFLRA 209 (279)
T ss_pred -----------cccHHHHHHH----HHHHHHHhh-----cCceE----EEEEeecchHHHHHHHHH
Confidence 2223333332 244455542 45554 335677777888877764
No 488
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=71.21 E-value=1e+02 Score=29.65 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=57.7
Q ss_pred CCCceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------CC
Q 016730 177 QEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (384)
Q Consensus 177 ~~g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~--------~~ 247 (384)
..+.++|=-|| ++|.+..+|..+.. +..|+-+-.+.+||..+.+.++...--.+.++..|..+..... ..
T Consensus 4 ~~~~~~lITGA-SsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGA-SSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 35667775555 55567777776544 3589999999999999999998654224677788887753221 11
Q ss_pred CCCCEEEEcCCCCCCCcCC
Q 016730 248 NTVDRVLLDAPCSGTGVIS 266 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~ 266 (384)
..+|..+-+| |.|...
T Consensus 83 ~~IdvLVNNA---G~g~~g 98 (265)
T COG0300 83 GPIDVLVNNA---GFGTFG 98 (265)
T ss_pred CcccEEEECC---CcCCcc
Confidence 3688877754 555544
No 489
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=71.04 E-value=27 Score=32.51 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=29.4
Q ss_pred hcCCCCCceEEEeccCC-ChHHHHHHHHccCCceEEEEeCCHHHHHHHH
Q 016730 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (384)
Q Consensus 173 ~L~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~D~~~~rl~~l~ 220 (384)
...+++|++||=.++|+ |..+..+|..++. .+|++++.++++++.++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHH
Confidence 34567899988875433 2233445555432 24999999999876444
No 490
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=71.00 E-value=58 Score=31.35 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=42.1
Q ss_pred eEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCccc---ccCCCCCCEEEEc
Q 016730 181 RVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDRVLLD 256 (384)
Q Consensus 181 ~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~---~~~~~~fD~VllD 256 (384)
+|| +-.|+|..+.+++..+.. ...|++++............+...+-.++.++.+|..+... .+....+|.|+.-
T Consensus 2 ~vl-VtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 2 RVL-VTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred eEE-EECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 344 345678999998885533 34788887532221111122233332345566788775432 2222368999886
Q ss_pred CC
Q 016730 257 AP 258 (384)
Q Consensus 257 aP 258 (384)
+.
T Consensus 81 a~ 82 (338)
T PRK10675 81 AG 82 (338)
T ss_pred Cc
Confidence 53
No 491
>PRK06180 short chain dehydrogenase; Provisional
Probab=70.98 E-value=92 Score=29.15 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=47.3
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~~ 249 (384)
+.+||=. .|+|+.+.+++..+.. ...|++++.++.+++.+... .-.++.++..|..+.... . ..+.
T Consensus 4 ~~~vlVt-GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLIT-GVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEe-cCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4567744 4567778888876543 34899999998877655432 123466667788764321 0 0146
Q ss_pred CCEEEEcCCC
Q 016730 250 VDRVLLDAPC 259 (384)
Q Consensus 250 fD~VllDaPC 259 (384)
+|.|+..+.-
T Consensus 79 ~d~vv~~ag~ 88 (277)
T PRK06180 79 IDVLVNNAGY 88 (277)
T ss_pred CCEEEECCCc
Confidence 8999886643
No 492
>PLN00015 protochlorophyllide reductase
Probab=70.92 E-value=54 Score=31.50 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred ccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc--------cCCCCCCEEEE
Q 016730 186 AAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNTVDRVLL 255 (384)
Q Consensus 186 cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--------~~~~~fD~Vll 255 (384)
..|++|.+..++..+...| .|+..+.+.++++.+...+...+ ..+.++..|..+.... ...+..|.++.
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lIn 81 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK-DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVC 81 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4567788888877654334 78888888887766655443222 2466667788764321 01256899998
Q ss_pred cCC
Q 016730 256 DAP 258 (384)
Q Consensus 256 DaP 258 (384)
++.
T Consensus 82 nAG 84 (308)
T PLN00015 82 NAA 84 (308)
T ss_pred CCC
Confidence 774
No 493
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=70.67 E-value=22 Score=34.48 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=30.7
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCC--ceEEEEeCCHHHHHHHHHHHHHcCCc
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVT 229 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~D~~~~rl~~l~~n~~r~g~~ 229 (384)
..++|++||=.+ .|+.+..++++.+.. ..|++++.++.+...++ .+|++
T Consensus 163 ~~~~g~~vlI~g--~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (345)
T cd08286 163 KVKPGDTVAIVG--AGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK----KLGAT 213 (345)
T ss_pred CCCCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCC
Confidence 356788877643 366555444443332 36888999998876654 46764
No 494
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=70.67 E-value=27 Score=34.74 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=32.1
Q ss_pred CCCCCceEEEeccCCChHHHHHHHHccCCc--eEEEEeCCHHHHHHHHHHHHHcCCce
Q 016730 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (384)
Q Consensus 175 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g--~V~a~D~~~~rl~~l~~n~~r~g~~~ 230 (384)
..++|++||=. |.|+.+..++++....| .|++++.++.+.+.+ +.+|++.
T Consensus 200 ~~~~g~~VlV~--g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~----~~~g~~~ 251 (384)
T cd08265 200 GFRPGAYVVVY--GAGPIGLAAIALAKAAGASKVIAFEISEERRNLA----KEMGADY 251 (384)
T ss_pred CCCCCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcCCCE
Confidence 46788988866 44666555444433323 699999988876444 4567754
No 495
>PRK07825 short chain dehydrogenase; Provisional
Probab=70.66 E-value=91 Score=28.97 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=47.1
Q ss_pred CceEEEeccCCChHHHHHHHHccC-CceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc-------c-CCCC
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLNT 249 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~-------~-~~~~ 249 (384)
|.+||=.| |+||.+.+++..+.. ...|+..+.++++++.+...+. ++.++..|..+.... . ..+.
T Consensus 5 ~~~ilVtG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 5 GKVVAITG-GARGIGLATARALAALGARVAIGDLDEALAKETAAELG-----LVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677444 567788887775433 3478889999888776654432 356667888764321 0 1146
Q ss_pred CCEEEEcCC
Q 016730 250 VDRVLLDAP 258 (384)
Q Consensus 250 fD~VllDaP 258 (384)
.|.++..+-
T Consensus 79 id~li~~ag 87 (273)
T PRK07825 79 IDVLVNNAG 87 (273)
T ss_pred CCEEEECCC
Confidence 899988654
No 496
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.55 E-value=89 Score=28.81 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=47.0
Q ss_pred CCceEEEeccCCChHHHHHHHHcc-CCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCcccc---c-----CCC
Q 016730 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~---~-----~~~ 248 (384)
+|.+||-.|+ .||.+..++..+- ....|+.++.+. .+.+.+.++..+. ++.++..|..+.... . ..+
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGR-KFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCC-eEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 4677886665 5667777776543 345788777653 2344445555553 466778888775321 1 125
Q ss_pred CCCEEEEcCC
Q 016730 249 TVDRVLLDAP 258 (384)
Q Consensus 249 ~fD~VllDaP 258 (384)
++|.++..+.
T Consensus 83 ~iD~lv~~ag 92 (251)
T PRK12481 83 HIDILINNAG 92 (251)
T ss_pred CCCEEEECCC
Confidence 7899988653
No 497
>PRK12744 short chain dehydrogenase; Provisional
Probab=70.46 E-value=88 Score=28.78 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=65.9
Q ss_pred CceEEEeccCCChHHHHHHHHccCCc-eEEEEeCC----HHHHHHHHHHHHHcCCceEEEEecCCCCccccc--------
Q 016730 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMK----ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (384)
Q Consensus 179 g~~VLD~cagpGgkt~~la~~~~~~g-~V~a~D~~----~~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~~-------- 245 (384)
|.+||=.| |.|+.+.+++..+...| .|+.++.+ ....+.+.+.++..+. ++.++..|..+.....
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHHH
Confidence 55777555 57778888887665433 65666533 3444445455555553 4667788887642210
Q ss_pred CCCCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHH----HHHHHHHHHHHHchhccCCCCcEEEEEeccC
Q 016730 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (384)
Q Consensus 246 ~~~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~----~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi 315 (384)
..+..|.++..+- .....| .+..+.++..+.. .--..+++.++..+ +++|.+++.++|.
T Consensus 86 ~~~~id~li~~ag-----~~~~~~--~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~----~~~~~iv~~~ss~ 148 (257)
T PRK12744 86 AFGRPDIAINTVG-----KVLKKP--IVEISEAEYDEMFAVNSKSAFFFIKEAGRHL----NDNGKIVTLVTSL 148 (257)
T ss_pred hhCCCCEEEECCc-----ccCCCC--cccCCHHHHHHHHhhhhhHHHHHHHHHHHhh----ccCCCEEEEecch
Confidence 1146899987652 222122 1222333332211 22233556666654 7778888765553
No 498
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.37 E-value=11 Score=37.49 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=70.9
Q ss_pred hhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-c-CCCCcccccCC
Q 016730 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-Y-DGNELPKVLGL 247 (384)
Q Consensus 170 ~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~~r~g~~~v~~~~-~-D~~~~~~~~~~ 247 (384)
+...+++++|+.|.=.|+|-=|.+......+-+.++|+|+|+++.+++.++ ++|.+.+.--. . |.........+
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGATHFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCceeecchhhhhHHHHHHHhcC
Confidence 455667899999988888766666655566666789999999999998775 57876432211 1 11111111222
Q ss_pred CCCCEEEEcCCCCCCCcCCCCchhhccCCHHHHHHHHHHHHHHHHHHHHchhccCCCCcEEEEEeccCCcccc
Q 016730 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (384)
Q Consensus 248 ~~fD~VllDaPCSg~G~~~r~p~~~~~~~~~~i~~l~~~Q~~iL~~a~~~L~~~lkpGG~lvYsTCSi~~~EN 320 (384)
...|.++- |.|. .+.++.|+..+ .++|..+..--.-...|.
T Consensus 253 gG~d~~~e---~~G~-------------------------~~~~~~al~~~----~~~G~~v~iGv~~~~~~i 293 (366)
T COG1062 253 GGADYAFE---CVGN-------------------------VEVMRQALEAT----HRGGTSVIIGVAGAGQEI 293 (366)
T ss_pred CCCCEEEE---ccCC-------------------------HHHHHHHHHHH----hcCCeEEEEecCCCCcee
Confidence 46777743 3332 12467777776 779998876544333333
No 499
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.21 E-value=11 Score=38.00 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=39.7
Q ss_pred CcCcchhhhcCCCCCceEEEeccCCChHHHHHHHHccCCceEEEEeCCHHHHHHHHHHH
Q 016730 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223 (384)
Q Consensus 165 ~ss~l~~~~L~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~D~~~~rl~~l~~n~ 223 (384)
+....-..+|++.|+++||=+++|-. -++.+ +..+-.+|+|||+|+..+..++-.+
T Consensus 22 EDp~vD~~aL~i~~~d~vl~ItSaG~-N~L~y--L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 22 EDPRVDMEALNIGPDDRVLTITSAGC-NALDY--LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCcHHHHHHhCCCCCCeEEEEccCCc-hHHHH--HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 34445567889999999998877644 45544 3334479999999999777765433
No 500
>PRK07791 short chain dehydrogenase; Provisional
Probab=70.01 E-value=1e+02 Score=29.23 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCceEEEeccCCChHHHHHHHHc-cCCceEEEEeCCH---------HHHHHHHHHHHHcCCceEEEEecCCCCcccc---
Q 016730 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKA---------SRLKSLTANLHRMGVTNTIVCNYDGNELPKV--- 244 (384)
Q Consensus 178 ~g~~VLD~cagpGgkt~~la~~~-~~~g~V~a~D~~~---------~rl~~l~~n~~r~g~~~v~~~~~D~~~~~~~--- 244 (384)
.|.++|=.|++. |.+..++..+ .....|+.++.+. ..++.+.+.+...|. ++.++..|..+....
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHH
Confidence 466788777654 5666666644 3345788888765 666666666655554 355667788764211
Q ss_pred -----cCCCCCCEEEEcCC
Q 016730 245 -----LGLNTVDRVLLDAP 258 (384)
Q Consensus 245 -----~~~~~fD~VllDaP 258 (384)
...+.+|.++.++-
T Consensus 83 ~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 01257899988663
Done!