RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016730
(384 letters)
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 330 bits (849), Expect = e-113
Identities = 137/276 (49%), Positives = 172/276 (62%), Gaps = 15/276 (5%)
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
+R NTLK DL + L NRGV L+P + V +S IG+TPEY+ G+Y Q A
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFE--VKESPFSIGSTPEYLFGYYYPQEA 58
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS +P +AL P+E ERV+DMAAAPGGKTT I+ LMKN G I ANE+ SR K+L +N++R
Sbjct: 59 SSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINR 118
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
MGV NTIV N DG + L D +LLDAPCSG GVI KD S K + S EDI+ CS
Sbjct: 119 MGVLNTIVINADGRKFGAY--LLKFDAILLDAPCSGEGVIRKDPSRKRNWSEEDIKYCSL 176
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344
LQK+LI AAID + K GG +VYSTCS+ V ENE VIDY L+KR DV G
Sbjct: 177 LQKELIDAAIDAL----KPGGVLVYSTCSLEVEENEEVIDYILRKRPDVVEEI---IKGD 229
Query: 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKV 380
+ F ++ R +P ++ +GFFVAK+
Sbjct: 230 EFFGINIG---KGEVKGALRVFPQNYDCEGFFVAKL 262
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 323 bits (830), Expect = e-109
Identities = 128/319 (40%), Positives = 179/319 (56%), Gaps = 15/319 (4%)
Query: 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLIN 124
L Y + E+L+ L + E + + +P P LR NTLK +L + L
Sbjct: 45 ILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEE 104
Query: 125 RGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID 184
GV + W ++ ++ PIG PE+ G +Q +S LP + L P+ ERV+D
Sbjct: 105 AGVLDEK--PWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLD 162
Query: 185 MAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
+ AAPGGKTT++A LM+N G I A ++ RLK L NL R+GV N IV N D L +
Sbjct: 163 LCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE 222
Query: 244 VL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANS 302
+L G DR+LLDAPCSGTGVI +D VK ++ EDI + + LQK+++ AA+ ++
Sbjct: 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL---- 278
Query: 303 KSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEK 361
K GG +VYSTCS+ ENE V++ L++ D +L P L +G E L K
Sbjct: 279 KPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWG-----PLFEGLG-SELGK 332
Query: 362 TRRFYPHVHNMDGFFVAKV 380
TRR YPHVH DGFF+AK+
Sbjct: 333 TRRLYPHVHGTDGFFIAKL 351
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 303 bits (778), Expect = e-102
Identities = 128/288 (44%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++E+ P LR N LKT+R L L GV L+PL ++ L V D IG+ P
Sbjct: 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPH-ALPVGDLPYSIGSLP 59
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
+ G +Q ASS L +AL PQE E ++DM AAPGGKTT+IA LMKN G + A +
Sbjct: 60 PFENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNK 119
Query: 214 SRLKSLTANLHRMGVTNTIVCN-YDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK 272
RLK + AN+ R+GV N IV K+LG DR+LLDAPCSGTGVI +D +K
Sbjct: 120 QRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLG-GEFDRILLDAPCSGTGVIRRDPDIK 178
Query: 273 TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331
+ DI + + LQK+L+ AA D+V K GG +VYSTCS++ ENEAVI Y L+KR
Sbjct: 179 WLRREADIAQLAELQKELLKAAWDLV----KPGGVLVYSTCSVLPEENEAVIKYFLQKRP 234
Query: 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
DV+LVP GL G+ ++ + PH N DGFF AK
Sbjct: 235 DVELVPTGLSEGKIALA-------KRIVKGGLQSLPHELNRDGFFFAK 275
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 209 bits (535), Expect = 1e-63
Identities = 99/309 (32%), Positives = 160/309 (51%), Gaps = 17/309 (5%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ ++ + + +++ES +P +R NTLK +L + L G ++
Sbjct: 147 YSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEE 206
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S S LV+ + I T + G +Q SS L AL P+ + V+D AAPGG
Sbjct: 207 -SLLSPEALVI--EKGNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGG 263
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+IA L+KNTG + A ++ +LK + N R+G+TN D ++ + D
Sbjct: 264 KTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFD 322
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
++L+DAPCSG GVI + +K +K+ EDI+ +Q + IL + V K GG +VYS
Sbjct: 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLE-IL---ESVAQYLKKGGILVYS 378
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TC+I ENE VI+ L++ + +LVP L + + + + + P+ +
Sbjct: 379 TCTIEKEENEEVIEAFLEEHPEFELVP--LQHEKP------DELVYEVKDGYLQILPNDY 430
Query: 371 NMDGFFVAK 379
DGFF+AK
Sbjct: 431 GTDGFFIAK 439
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 200 bits (512), Expect = 4e-60
Identities = 112/314 (35%), Positives = 164/314 (52%), Gaps = 41/314 (13%)
Query: 84 EMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVV- 142
M + + + I + ++P +R NTLK D ++ G L P+ W + G +
Sbjct: 15 AMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIP-WCEEGFWIE 73
Query: 143 --YDSQVPIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAA 198
+ +P+G T E+++G + +Q ASS LPV AL +RV+DMAAAPG KTT IAA
Sbjct: 74 RDDEDALPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAA 133
Query: 199 LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG---LNTVDRVLL 255
LM N G I ANE ASR+K L AN+ R GV+N + ++DG +V G T D +LL
Sbjct: 134 LMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG----RVFGAALPETFDAILL 189
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCSG G + KD + S E + + Q++LI +A + K GG +VYSTC++
Sbjct: 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPGGTLVYSTCTL 245
Query: 316 MVTENEAVIDYALKKR---DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR------RFY 366
EN+AV + LK+ V+ P G F P EK +
Sbjct: 246 NREENQAVCLW-LKETYPDAVEFEPLGDLF--------------PGAEKALTEEGFLHVF 290
Query: 367 PHVHNMDGFFVAKV 380
P +++ +GFFVA++
Sbjct: 291 PQIYDSEGFFVARL 304
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 186 bits (474), Expect = 6e-55
Identities = 97/315 (30%), Positives = 154/315 (48%), Gaps = 31/315 (9%)
Query: 68 LGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGV 127
L + + ++L+ +E E +L + F +P + LR N L+T ++ L G+
Sbjct: 143 LAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGI 202
Query: 128 NLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAA 187
P+ + GL + + I P Y G++ +Q S+ L L PQ E ++D A
Sbjct: 203 TATPIPGLPQ-GLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACA 261
Query: 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG- 246
APGGKTT+IA LM + G I+A + ASRLK L N R+G+ + + D L ++
Sbjct: 262 APGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321
Query: 247 -LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305
DR+LLDAPCSG G + + + ++ E IQ+ + LQ +L+ + ++ K G
Sbjct: 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----KPG 377
Query: 306 GYIVYSTCSIMVTENEAVIDYAL-KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRR 364
G +VY+TC++ ENEA I+ L + D KL P K +
Sbjct: 378 GTLVYATCTLHPAENEAQIEQFLARHPDWKLEP----------------------PKQKI 415
Query: 365 FYPHVHNMDGFFVAK 379
+PH + DGFF+A
Sbjct: 416 -WPHRQDGDGFFMAV 429
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
RsmB. This protein is also known as sun protein. The
reading frame was originally interpreted as two reading
frames, fmu and fmv. The recombinant protein from E.
coli was shown to methylate only C967 of small subunit
(16S) ribosomal RNA and to produce only m5C at that
position. The seed alignment is built from bacterial
sequences only. Eukaryotic homologs include Nop2, a
protein required for processing pre-rRNA, that is likely
also a rRNA methyltransferase, although the fine
specificity may differ. Cutoff scores are set to avoid
treating archaeal and eukaroytic homologs automatically
as functionally equivalent, although they may have very
similar roles [Protein synthesis, tRNA and rRNA base
modification].
Length = 426
Score = 157 bits (398), Expect = 5e-44
Identities = 93/324 (28%), Positives = 148/324 (45%), Gaps = 24/324 (7%)
Query: 59 EYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDL 118
E + L + Y + E+L+ L + +P + E+ + P+ LR N K R +
Sbjct: 122 EELLAEFNALDARYLHPEWLVKRLQKAYPGQW-QSICEANNQRPPMWLRINRTKHSRDEW 180
Query: 119 ADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQE 178
+L G+ P V ++ + A P + G+ +Q AS+ LAPQ
Sbjct: 181 LALLAEAGMKGFPHDLAPDA--VRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQN 238
Query: 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYD 237
+E ++D AAPGGKTT+I L + A ++ RLK + NL R+G+T + D
Sbjct: 239 EETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGD 297
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
G + DR+LLDAPCS TGVI + +K + DI + + LQ +++ A +
Sbjct: 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL 357
Query: 298 VDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
+ K+GG +VY+TCS++ EN I L++ DF F +
Sbjct: 358 L----KTGGTLVYATCSVLPEENSEQIKAFLQEH--------PDF------PFEKTGTPE 399
Query: 358 SLEKTR-RFYPHVHNMDGFFVAKV 380
+ + PH DGFF AK+
Sbjct: 400 QVRDGGLQILPHAEEGDGFFYAKL 423
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 136 bits (343), Expect = 5e-36
Identities = 80/292 (27%), Positives = 144/292 (49%), Gaps = 8/292 (2%)
Query: 46 NFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPIC 105
NFK L R V + K +L Y + ++L+ P ++ ++E ++P P
Sbjct: 107 NFKKLVNAVLRRLRTVPEPK-ELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTM 165
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
LR N+L R ++ +L G P K S L+V V + + G +Q
Sbjct: 166 LRVNSLAITREEVIKILAEEGTEAVP-GKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGE 224
Query: 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
SS + + + + RV+D AAPGGKTT IA LMK+ G I A ++ +++ + + R
Sbjct: 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284
Query: 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY 285
+ +++ + D L + + +T DR+L+DAPC+ G V + ED +K S
Sbjct: 285 LKLSSIEIKIADAERLTEYVQ-DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE 343
Query: 286 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-EAVIDYALKKRDVKLV 336
+Q +++ A ++ + GG ++YSTC++ EN E V + +++D +++
Sbjct: 344 IQLRIVSQAWKLL----EKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 130 bits (330), Expect = 4e-34
Identities = 97/327 (29%), Positives = 156/327 (47%), Gaps = 33/327 (10%)
Query: 57 RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRR 116
++E + +L+ D + Y + +LI L + +P + ++ + + P+ LR N R
Sbjct: 126 QEELLAELQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRHHSRD 184
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAP 176
+L G+ P + + ++ VP+ P + G+ +Q A++ L LAP
Sbjct: 185 AYLALLAEAGIEAFP-HAVGPDAIRL-ETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAP 242
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236
Q ERV+D AAPGGKT +I L ++ A ++ A RL+ + NL R+G+ T++
Sbjct: 243 QNGERVLDACAAPGGKTAHILELAPQAQVV-ALDIDAQRLERVRENLQRLGLKATVIVG- 300
Query: 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI- 295
D + + DR+LLDAPCS TGVI + +K + EDI + LQ + IL A+
Sbjct: 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE-ILDALW 359
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGL--DFGRQGFVRFRE 352
++ K GG ++Y+TCSI+ ENE I L + D +L+ G GRQ
Sbjct: 360 PLL----KPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQ------- 408
Query: 353 HRFHPSLEKTRRFYPHVHNMDGFFVAK 379
P + DGFF A
Sbjct: 409 ------------LLPGEEDGDGFFYAL 423
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 113 bits (285), Expect = 7e-28
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222
Q+ + L + L PQ V+D+ AAPGGK+T++A LM+N G I A + +L+ + ++
Sbjct: 235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294
Query: 223 LHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK 282
+G+ TI+ +G+ D +LLDAPC+GTGV+ + ++ + E + +
Sbjct: 295 ASALGI--TIIETIEGDARSFSPEE-QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAE 351
Query: 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330
LQ +L+ A ++ GG +VY+TCSI ENE I+ L++
Sbjct: 352 LVGLQAELLDHAASLLKP----GGVLVYATCSIEPEENELQIEAFLQR 395
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 36.0 bits (84), Expect = 0.018
Identities = 36/160 (22%), Positives = 54/160 (33%), Gaps = 33/160 (20%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKA-SRLKSLTANLHRMGVTNTIVCNY 236
V+D+ AAPGG + A + G I A MK + L ++ ++
Sbjct: 48 VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEA- 106
Query: 237 DGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
LG VD VL D + +G S D L A++
Sbjct: 107 --------LGGAPVDVVLSDMAPNTSGNRSVDH---------------ARSMYLCELALE 143
Query: 297 MVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK--RDVK 334
K GG V + E+ + AL++ R VK
Sbjct: 144 FALEVLKPGGSFV---AKVFQGEDFEDLLKALRRLFRKVK 180
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 34.5 bits (80), Expect = 0.045
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 30/140 (21%)
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKASRL-KSLTANLHRMGVT 229
L P + + V+D+ AAPGG + + G + A M+ + L + +T
Sbjct: 18 LKPGKGKTVLDLGAAPGGFSQVLLERGGA-GKVVAVDLGPMEPIQGVYFLRGD-----IT 71
Query: 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ 289
+ +L ++L VD VL D + +G+ + D S++ Q
Sbjct: 72 DPET----LEKLRELLP-GKVDLVLSDGAPNVSGIENTD---------------SFISLQ 111
Query: 290 LILAAIDMVDANSKSGGYIV 309
L+LAA+ + + GG V
Sbjct: 112 LVLAALLLALEVLRPGGNFV 131
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 33.1 bits (76), Expect = 0.13
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CN 235
+E E V+DM A G + IA K +YA E+ +K L N+ V I
Sbjct: 99 KEGEVVVDMFAGIGPFSIPIAKHSK-AKRVYAVELNPEAVKYLKENIKLNKVEGVISPIL 157
Query: 236 YDGNELPKVLGLNTVDRVLLDAP 258
D + V+ DRV+++ P
Sbjct: 158 GDVRD---VILEGVADRVIMNLP 177
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 32.3 bits (74), Expect = 0.15
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV 233
L + + + D+ A G T A L+ N G +YA E L + NL R GV+N ++
Sbjct: 15 LRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDLIERNLRRFGVSNIVI 73
Query: 234 CNYDGNELPKVLGLNTVDRV 253
D E P+ L L D V
Sbjct: 74 VEGDAPEAPEDL-LPDPDAV 92
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 32.0 bits (73), Expect = 0.16
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 21/135 (15%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGN 239
RV+D A G A + + E+ L G+ V D
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPD-ARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
EL L + D VL + P K D L + + AA+ ++
Sbjct: 62 ELL-ELPDGSFDLVLGNPPYGPR--------AGDPKDNRD------LYDRFLAAALRLL- 105
Query: 300 ANSKSGGYIVYSTCS 314
K GG +V T +
Sbjct: 106 ---KPGGVLVVITPA 117
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 33.0 bits (76), Expect = 0.16
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 38/163 (23%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
L P+ +R+ D+ A G T AL +G + A E L+ + N R GV N
Sbjct: 29 KLRPRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE 87
Query: 233 VCNYDGNELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI 291
V D P+ L L + D + I ++E+I +
Sbjct: 88 VVEGDA---PEALPDLPSPDAI----------FIGG------GGNIEEI----------L 118
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334
AA + + K GG +V + ++ E A AL++ +
Sbjct: 119 EAAWERL----KPGGRLVANAITL---ETLAKALEALEQLGGR 154
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 31.9 bits (73), Expect = 0.28
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPG 190
S VG + +VPI E + ML S + ++ + P+E E V+ + G
Sbjct: 78 SGVGAEIDLDKVPIFE--ELLLPLEMLFSENQGRGLVVVVPEEAEAVLAILEEEG 130
>gnl|CDD|152429 pfam11994, DUF3489, Protein of unknown function (DUF3489). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 84 to 211 amino acids in length.
This protein has a single completely conserved residue W
that may be functionally important.
Length = 72
Score = 29.6 bits (67), Expect = 0.51
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTG 204
++ RVI M P G T IAA+ + TG
Sbjct: 8 EGSKQARVIAMLRRPEGAT--IAAISEATG 35
>gnl|CDD|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial homologs of
mammalian glycerophosphodiester phosphodiesterase GDE4.
This subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in
uncharacterized bacterial homologs of mammalian GDE4, a
transmembrane protein whose cellular function has not
been elucidated yet.
Length = 309
Score = 31.6 bits (72), Expect = 0.60
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 33/162 (20%)
Query: 53 KGTSRKEYVQQLK-LDLGSYYGYN-----EF-LIGALVEMFPPVELMELIESFEKPRPIC 105
G +R + +LK LD+G YGY F G V M P L E+ +F R
Sbjct: 104 SGVTRDHTMAELKTLDIG--YGYTADGGKTFPFRGKGVGMMP--TLDEVFAAFPDRR--- 156
Query: 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 165
N K+ ++L + L L + L VY PI A E
Sbjct: 157 FLIN-FKSDDAAEGELLAEK---LATLPRKRLQVLTVYGGDKPIAALRELTPD------- 205
Query: 166 SSFLPVMALAPQE-KERVIDMAAAPGGKTTYIAALMKNTGLI 206
+ L+ K+ +I+ A G T Y+ +NT L+
Sbjct: 206 -----LRTLSKASMKDCLIEYLA--LGWTGYVPDSCRNTTLL 240
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 31.4 bits (71), Expect = 0.72
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 190 GGKTTYIAALM----KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238
GG T Y AA+M GL+ + E + N+ R+G+ N I DG
Sbjct: 88 GGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140
>gnl|CDD|144768 pfam01290, Thymosin, Thymosin beta-4 family.
Length = 41
Score = 28.1 bits (63), Expect = 0.89
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 14 LPTKEEIEEEKQQ 26
LPTKE+IE+EK
Sbjct: 28 LPTKEDIEQEKTA 40
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 30.3 bits (69), Expect = 1.3
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 144 DSQVPIGA----TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAAL 199
D +PIG + +M MLQ L + +RV+++ G Y AA+
Sbjct: 44 DRALPIGCGQTISAPHMVA-RMLQ---------LLELKPGDRVLEIGTGSG----YQAAV 89
Query: 200 M-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
+ + G + + E + NL +G N V + DG++
Sbjct: 90 LARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK 131
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 30.4 bits (69), Expect = 1.6
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 6 REESDEFRLPTKEEIEE--EKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQ 63
EE +F P +E +E+ KQ+ L + I+E + + R++ +Q+
Sbjct: 196 EEELKKFD-PLQERVEQNLSKQE-----ELLKEIQEANEEFLQERKSDSEQKEREKVLQK 249
Query: 64 LKLDLGSYYGYNEFL 78
L+ +Y Y E
Sbjct: 250 LEN---AYDKYKELS 261
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRL 216
LA Q +RV+D+ PG +A + G + + + L
Sbjct: 14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML 57
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 28.9 bits (65), Expect = 5.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 308 IVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYP 367
+++S +M ++ V + L +R VK + G G++ FRE FH S + R+ P
Sbjct: 106 LIFSNWLLMYLSDKEVEN--LAERMVKWLKVG------GYIFFRESCFHQSGDSKRKNNP 157
Query: 368 HVHNMDGFFVAKVY 381
H + F KV+
Sbjct: 158 -THYREPRFYTKVF 170
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor. This family
includes the ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor, and its fish
homolog, the 5.24 chemoreceptor. GPRC6A is a member of
the family C of G-protein-coupled receptors that
transduce extracellular signals into G-protein
activation and ultimately into cellular responses.
Length = 403
Score = 28.7 bits (64), Expect = 5.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA-----NSKSG-----GYIVYSTCSI 315
SV+ + S IQ+C + + L + M+ A NS GY +Y TCS
Sbjct: 10 EAMLSVEDTPSRPQIQECVGFEIKGFLQTLAMIHAIEMINNSTLLLGVTLGYEIYDTCSE 69
Query: 316 MVTENEAVIDY 326
+ T AV+ +
Sbjct: 70 VTTAMAAVLRF 80
>gnl|CDD|191776 pfam07537, CamS, CamS sex pheromone cAM373 precursor. This family
includes CamS, from which Staphylococcus aureus sex
pheromone staph-cAM373 is processed.
Length = 318
Score = 28.6 bits (64), Expect = 5.9
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 29 DLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLG-SYYGYNE------FLIGA 81
D N KE+ N+ + KG+ + + +Q+L +D+ +YG E ++ G
Sbjct: 223 DNDNFSNFKKEVQGYFPNYTGVVGKGSYKDDELQKLTIDIPIQFYGKTEIIGFTQYVAGL 282
Query: 82 LVEMFP---PVELMELIESFEKPRPICLRT 108
+ + FP VE+ I+S KP I +RT
Sbjct: 283 VEDYFPKYADVEIN--IKSSNKPEAIIIRT 310
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 28.8 bits (65), Expect = 6.3
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 109 NTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY-DSQVPIGATPE---YMAGFYMLQS 164
+ +R A L ++ +GL+++ +QV GA + +A + +
Sbjct: 229 ASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAA 288
Query: 165 ASSFLPVMALAPQEKERVIDMA 186
+F P+ A Q +VI A
Sbjct: 289 LEAFEPLAPGAFQHLGQVIASA 310
>gnl|CDD|217540 pfam03408, Foamy_virus_ENV, Foamy virus envelope protein.
Expression of the envelope (Env) glycoprotein is
essential for viral particle egress. This feature is
unique to the Spumavirinae, a subclass of the
Retroviridae.
Length = 985
Score = 28.6 bits (64), Expect = 6.3
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 11 EFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYV--------- 61
EF+ P E++ + P +P L+ R+ +V +++ K L + TS E +
Sbjct: 839 EFKKPLTAELKTSFE--PQIPQLRLRLPHLVGIIAKLKGLKIEVTSTWESIKDQIERAKA 896
Query: 62 QQLKLDL--GSYYGYNEFLIGALVEMFP 87
+ L+LD+ G Y + + L A +++P
Sbjct: 897 ELLRLDIHEGDYPAWIQQLAAATEDVWP 924
>gnl|CDD|233387 TIGR01379, thiL, thiamine-monophosphate kinase. This model
describes thiamine-monophosphate kinase, an enzyme that
converts thiamine monophosphate into thiamine
pyrophosphate (TPP, coenzyme B1), an enzyme cofactor.
Thiamine monophosphate may be derived from de novo
synthesis or from unphosphorylated thiamine, known as
vitamin B1. Proteins scoring between the trusted and
noise cutoff for this model include short forms from the
Thermoplasmas (which lack the N-terminal region) and a
highly derived form from Campylobacter jejuni.
Eukaryotes lack this enzyme, and add pyrophosphate from
ATP to unphosphorylated thiamine in a single step
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 317
Score = 28.1 bits (63), Expect = 7.3
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 117 DLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIG-ATPEYMAGFYMLQSASS----FLPV 171
D++D L +L +++ S VG+V+ ++P+ + G L+ A S + V
Sbjct: 210 DVSDGLA---ADLGHIAEASGVGIVIDLDRLPLSSELAAWAEGKNPLEWALSGGEDYELV 266
Query: 172 MALAPQEKERVIDMAAAP 189
+ P+ +E ++D A P
Sbjct: 267 FTVPPERREALLDAAKGP 284
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 27.9 bits (62), Expect = 7.8
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMK 212
+ + V+D+ AAPGG + + G + A MK
Sbjct: 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 27.8 bits (62), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 182 VIDMAAAPGGKTTYIAALMKNTGLIYA 208
V+D+ AAPGG + Y + + G + A
Sbjct: 55 VVDLGAAPGGWSQYAVTQIGDKGRVIA 81
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring
characterized proteins other than methionyl-tRNA
formyltransferase (fmt) itself are
formyltetrahydrofolate dehydrogenases. The mitochondrial
methionyl-tRNA formyltransferases are so divergent that,
in a multiple alignment of bacterial fmt, mitochondrial
fmt, and formyltetrahydrofolate dehydrogenases, the
mitochondrial fmt appears the most different. However,
because both bacterial and mitochondrial fmt are
included in the seed alignment, all credible fmt
sequences score higher than any non-fmt sequence. This
enzyme modifies Met on initiator tRNA to f-Met [Protein
synthesis, tRNA aminoacylation].
Length = 313
Score = 28.1 bits (63), Expect = 8.0
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 47 FKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGALVEMFP 87
F+ Q+ V++LK D+ + + L +++FP
Sbjct: 60 FQPEKQRQLEELPLVRELKPDVIVVVSFGKILPKEFLDLFP 100
>gnl|CDD|221059 pfam11285, DUF3086, Protein of unknown function (DUF3086). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 283
Score = 28.1 bits (63), Expect = 8.8
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 19 EIEEEKQQ----PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGY 74
++E+ +Q L + +I++ +R ++F S R V+ G+
Sbjct: 8 DLEQRRQALEIEIEKLERRKEQIEQELR--TSFAGQSDAIARR---VK----------GF 52
Query: 75 NEFLIGALVEMFPPVELMELI--ESFEKPRPI 104
++L+GAL ++ E +EL+ +P P+
Sbjct: 53 QDYLVGALQDLAQSAEQLELVPQPVVVQPSPL 84
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family. Transcription of the AUX/IAA
family of genes is rapidly induced by the plant hormone
auxin. Some members of this family are longer and
contain an N terminal DNA binding domain. The function
of this region is uncertain.
Length = 188
Score = 27.7 bits (62), Expect = 9.2
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 65 KLDLGSYYGYNEFLIGALVEMF 86
K+DL Y Y+E L AL +MF
Sbjct: 105 KVDLKMYKSYDE-LSSALEKMF 125
>gnl|CDD|238575 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz)
kinase catalyzes the phosphorylation of the
hydroxylgroup of Thz. A reaction that allows cells to
recycle Thz into the thiamine biosynthesis pathway, as
an alternative to its synthesis from cysteine, tyrosine
and 1-deoxy-D-xylulose-5-phosphate.
Length = 242
Score = 27.5 bits (62), Expect = 9.7
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225
P+M+ AP+E V ++A G AL+ N G + + +++A AN
Sbjct: 34 PIMSDAPEE---VEELAKIAG-------ALVINIGTLTSEQIEAMLKAGKAANQLG 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,865,886
Number of extensions: 1944306
Number of successful extensions: 2033
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1995
Number of HSP's successfully gapped: 48
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)