RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016730
(384 letters)
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 483 bits (1246), Expect = e-173
Identities = 116/319 (36%), Positives = 175/319 (54%), Gaps = 10/319 (3%)
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LD GY++ +++ + + E+ EKP P C R NTLK +DL
Sbjct: 3 LSPSMLDKLLRLGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVK 61
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
L +G W+K G + I +TPE++ G +Q ASS P +AL P+ E
Sbjct: 62 RLNKKGFQFKR-VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGE 120
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V DMAAAPGGKT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ +
Sbjct: 121 IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ ++ D++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++
Sbjct: 181 IGELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL-- 236
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K GG +VYSTCS+ ENE VI +AL DV+L+P L +G ++
Sbjct: 237 --KPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIK 292
Query: 361 KTRRFYPHVHNMDGFFVAK 379
RR YP VH GFF+AK
Sbjct: 293 NARRLYPDVHETSGFFIAK 311
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 445 bits (1146), Expect = e-155
Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 21/317 (6%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
+ Y + FL M + + + + ++P +R NTLK D + G L
Sbjct: 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTL 64
Query: 130 DPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVID 184
P W + G + + +P+G+T E+++G + +Q ASS LPV AL +RV+D
Sbjct: 65 TP-IPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMD 123
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
+AAAPG KTT I+A M N G I ANE ASR+K L AN+ R G++N + ++DG
Sbjct: 124 VAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA 183
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+ D +LLDAPCSG GV+ KD + S E Q+ + Q++LI +A + +
Sbjct: 184 VP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RP 238
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
GG +VYSTC++ ENEAV + + V+ +P G F + E
Sbjct: 239 GGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP--------GANKALTEEGF 290
Query: 363 RRFYPHVHNMDGFFVAK 379
+P +++ +GFFVA+
Sbjct: 291 LHVFPQIYDCEGFFVAR 307
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 432 bits (1113), Expect = e-150
Identities = 97/307 (31%), Positives = 142/307 (46%), Gaps = 17/307 (5%)
Query: 76 EFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
+ + + E+ E +++ E R LR NTLK + L P
Sbjct: 4 KAFLSRMAELLGE-EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRI---SPWPLRP-IP 58
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
W + G + P G P + AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT
Sbjct: 59 WCQEGFYYPEEARP-GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
++AA M GL+ ANE+ R++ L N+ R G V L + G RVL
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL-AVTQAPPRALAEAFG-TYFHRVL 175
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSG G+ KD ++ + +QK L+ A ++ GG +VYSTC+
Sbjct: 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL----GPGGVLVYSTCT 231
Query: 315 IMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
ENE V+ + LK + +L L G + E +P L KT R +PH
Sbjct: 232 FAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGE--GNPELLKTARLWPHRLEG 289
Query: 373 DGFFVAK 379
+G F+A+
Sbjct: 290 EGHFLAR 296
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 429 bits (1104), Expect = e-149
Identities = 90/308 (29%), Positives = 141/308 (45%), Gaps = 16/308 (5%)
Query: 74 YNEFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+ I + E + + + R N LK D+ + + P
Sbjct: 8 LPQQFIKKYRLLLGE-EASDFFSALEQGSVKKGFRWNPLKPAGLDMVQTYHSEELQPAP- 65
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
+S G + G + + AG+ Q S+ + A A + E+V+D+ AAPGGK
Sbjct: 66 --YSNEGFLG----TVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGK 119
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
+T +AA MK GL+ NE+ R K L+ N+ R GV+N IV N+ EL DR
Sbjct: 120 STQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS-GFFDR 178
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
+++DAPCSG G+ KD + + E C Q++++ +AI M+ K+ G ++YST
Sbjct: 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML----KNKGQLIYST 234
Query: 313 CSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
C+ ENE +I + ++ V + L E LEKT R +PH
Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSG--RSEWGSVAGLEKTIRIWPHKDQG 292
Query: 373 DGFFVAKV 380
+G FVAK+
Sbjct: 293 EGHFVAKL 300
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 411 bits (1060), Expect = e-145
Identities = 115/290 (39%), Positives = 165/290 (56%), Gaps = 24/290 (8%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++ ++ + +R NTLK L L N+GV L+ + V S IG+TP
Sbjct: 1 MMIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTP 58
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
EY+ G+YM QS SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+
Sbjct: 59 EYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK 118
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESV 271
+R K+L +N++RMGV NTI+ N D + L N + D++LLDAPCSG + K+
Sbjct: 119 TRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNR-- 176
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
+ S EDI+ CS QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR
Sbjct: 177 --NVSEEDIKYCSLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKR 230
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPS-LEKTRRFYPHVHNMDGFFVAK 379
DV+L+ + F+ ++ T R +P + FF+AK
Sbjct: 231 NDVELIIIKAN-------EFKGINIKEGYIKGTLRVFPP---NEPFFIAK 270
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 387 bits (995), Expect = e-135
Identities = 88/302 (29%), Positives = 131/302 (43%), Gaps = 32/302 (10%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVV 142
P +R NTLKT D+ D +G + + L+V
Sbjct: 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV 66
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
+ +Q + P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAPCSG 261
G I+A ++ A RL S+ L R GV+ + D + + V +LLD CSG
Sbjct: 127 QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186
Query: 262 TGVISKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+ S+ + + + + Q++ + A+ S +VYSTCS+ E
Sbjct: 187 SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-----PSLQRLVYSTCSLCQEE 241
Query: 320 NEAVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
NE V+ AL++ +L P + +G F P E R P GFFV
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFV 295
Query: 378 AK 379
A
Sbjct: 296 AV 297
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 261 bits (670), Expect = 5e-84
Identities = 95/309 (30%), Positives = 148/309 (47%), Gaps = 19/309 (6%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y +LI + + ++ I +R NTLK ++ L GV +
Sbjct: 155 YLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVR 214
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S+ L + + + G ++Q +S + + L P+ E V+D+AAAPGG
Sbjct: 215 -SERVPTILKI-KGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGG 272
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT++A LMKN G IYA ++ R+K L + RMG+ D + P+++G D
Sbjct: 273 KTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVAD 332
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
+VLLDAPC+ +G I K+ ++ + I + S LQ++L+ +A +V K GG ++Y+
Sbjct: 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV----KPGGRLLYT 388
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCSI ENE I + L + KLVP + LE T R +PH H
Sbjct: 389 TCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPG------------FLEGTMRAWPHRH 436
Query: 371 NMDGFFVAK 379
+ GFF A
Sbjct: 437 STIGFFYAL 445
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 238 bits (609), Expect = 5e-75
Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 31/311 (9%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ L + +P + ++E+ + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ + ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGG
Sbjct: 202 -HADYPDAVRL-ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+I + + A ++ RL + NL R+G+ T+ DG + G D
Sbjct: 260 KTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFD 317
Query: 252 RVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
R+LLDAPCS TGVI + D +K + DI + + LQ +++ A + K+GG +V
Sbjct: 318 RILLDAPCSATGVIRRHPD--IKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLV 371
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
Y+TCS++ EN I L++ D +L G + ++ P
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTP-----------------EQPGKQNLPG 414
Query: 369 VHNMDGFFVAK 379
DGFF AK
Sbjct: 415 AEEGDGFFYAK 425
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 47.5 bits (113), Expect = 1e-06
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 35/164 (21%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
ALAP+ E + D+ G E+ R + + +N +GV++ I
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI 78
Query: 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292
+ + D + + + GV
Sbjct: 79 AVQQGAPRAFDDV-PDNPDVIFIGGGLTAPGV---------------------------- 109
Query: 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336
GG +V + ++ E+E ++ K+ +
Sbjct: 110 --FAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTIS 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 46/365 (12%), Positives = 101/365 (27%), Gaps = 119/365 (32%)
Query: 3 LNIREESDEFR-LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSR-KEY 60
+ ++ D + + +KEEI+ + R+ F L K +++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-LRL---------FWTLLSKQEEMVQKF 82
Query: 61 VQQ-LKLDLGSYYGYNEFLIGAL-VEMFPPVELMELIESFEKPRPICLRTNTLKTR---- 114
V++ L+++ Y FL+ + E P + + + + R N + +
Sbjct: 83 VEEVLRIN----YK---FLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVS 132
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
R L + L P +++ G + G
Sbjct: 133 RLQPYLKLRQALLELRPAK-----NVLID------G-----VLGS--------------- 161
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
GKT + + + + + + + N C
Sbjct: 162 ----------------GKTWVALDVCLSYKVQCKMDF----------KIFWLNLKN---C 192
Query: 235 NYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDESVKTSKS----LEDIQKCSYLQKQ 289
N L + L +D + + + S++ + + C L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L--- 247
Query: 290 LIL------AAIDMVDANSKSGGYIVYSTCSIMV-TENEAVIDYALKKRDVKLVPCGLDF 342
L+L A + + + C I++ T + V D+ + LD
Sbjct: 248 LVLLNVQNAKAWNAFNLS-----------CKILLTTRFKQVTDFLSAATTTHIS---LDH 293
Query: 343 GRQGF 347
Sbjct: 294 HSMTL 298
Score = 46.8 bits (110), Expect = 9e-06
Identities = 67/464 (14%), Positives = 135/464 (29%), Gaps = 156/464 (33%)
Query: 18 EEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK-----LDLGSY- 71
I+ E++QP + I++ R+ ++ + ++ SR + +L+ L
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 72 --YGYNEFLIGA--------------LVEMFP-------------PVELMELIESF---- 98
G ++G+ + P ++E+++
Sbjct: 154 LIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 99 --------EKPRPICLRTNTLKTRRRDL-------ADVLINRGVN----LDPLSKWSKVG 139
+ I LR ++++ R L +L+ V + + K+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268
Query: 140 LV------VYDSQVPIGATPEYM----AGFYMLQSASSFLPVMALAPQE--KE------R 181
L+ V D T + + S L + PQ+ +E R
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 182 VIDMAAAPGGKTTYIAALMKN-----TGLIYANEMKASR-----LKSLTANLHRMGVTNT 231
+ + IA +++ + N K + L L +R
Sbjct: 329 RLSI----------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 232 IVCNYDGNELPKVLGL-------NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS 284
V + +L L + V V+ ++ K +++ S+ I
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQ-PKESTISIPSIY-LE 434
Query: 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID-YAL-KKRDV-KLVPCGLD 341
K A+ + +++D Y + K D L+P LD
Sbjct: 435 LKVKLENEYAL------------------------HRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 342 FGRQGFVRFREH-RFHPSLEKTRRFYPHVHNMDGFFVAKVYLDL 384
+ F H H L+ H M F V+LD
Sbjct: 471 ----QY--FYSHIGHH--LKNIE----HPERMTLF--RMVFLDF 500
Score = 32.1 bits (72), Expect = 0.33
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 40/137 (29%)
Query: 22 EEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLD--LGSYYGYNEFLI 79
E K + + L R I + + F + + LD S+ G++ L
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFD---------SDDLIPPYLDQYFYSHIGHH--LK 482
Query: 80 GA----LVEMFP----------------------PVELMELIESFEKPRP-ICLRTNTLK 112
+ +F ++ ++ + +P IC +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 113 TRRRDLADVLINRGVNL 129
+ D L NL
Sbjct: 543 RLVNAILDFLPKIEENL 559
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.0 bits (99), Expect = 1e-04
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+E V+D+ G Y++ ++ G +YA +++ + ++++G+ N
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 233 VCNYDGNELPKVLGLNTVDRVLL 255
V + N++P L NTVD + +
Sbjct: 92 VLKSEENKIP--LPDNTVDFIFM 112
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 37.2 bits (86), Expect = 0.004
Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230
+ + +E + V+D G T ++A+L+ G ++ +++ + + T L + + +
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74
Query: 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL 290
+ DG++ V V+ + S + +++ + K
Sbjct: 75 RVTLIKDGHQNMDKYIDCPVKAVMFN--LGYLPSGDHSISTRPETTIQALSK-------- 124
Query: 291 ILAAIDMVDANSKSGGYI---VYSTCSIMVTENEAVIDYA 327
+ + +GG I +Y E E V+++
Sbjct: 125 AMELL-------VTGGIITVVIYYGGDTGFEEKEKVLEFL 157
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.005
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 6 REESDEFRLPTKEEIEEEKQQ------PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
REE + RL + + +Q DL +R E V K+ + K
Sbjct: 91 REEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE-----KNKINNRIADKA 144
Query: 60 YVQQLKLDL 68
+ QQ D+
Sbjct: 145 FYQQPDADI 153
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 35.3 bits (82), Expect = 0.017
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
L + + V+D+ GG + + K +YA + ++ NL + + N
Sbjct: 30 KLNLNKDDVVVDVGCGSGG----MTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNC 85
Query: 232 IV 233
+
Sbjct: 86 QI 87
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 34.8 bits (80), Expect = 0.025
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-- 230
ALAP+ E + D+ G + G E +A R++++ N+ G++
Sbjct: 50 ALAPRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRM 106
Query: 231 TIVCNYDGNELPKVL-GLNTVDRVLLDA 257
V P L L + V +
Sbjct: 107 RAVQ----GTAPAALADLPLPEAVFIGG 130
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 32.7 bits (74), Expect = 0.13
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 11/137 (8%)
Query: 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237
E + V D+ A G + AL+ + E+ + L NL +
Sbjct: 49 EGKVVADLGAGTGVLS--YGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV 106
Query: 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDM 297
+ VD V+++ P G K +I Y
Sbjct: 107 SEFNSR------VDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRF 157
Query: 298 VDANSKSGGYIVYSTCS 314
++ S G++V +
Sbjct: 158 IEKFSWEHGFVVTHRLT 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.16
Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 82/251 (32%)
Query: 77 FLIGALV-EMFP-----PVELMELIESFEK-PRPICLRTNTLKTRRRDLADV--LINRGV 127
F IG E +P P L + +E+ E P P+ L V +N+
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNK-T 356
Query: 128 NLD-PLSKWSKVGLVVYDSQVPIGATPEYMAGFYML-----------QS----------- 164
N P K ++ LV + + P+ + G + QS
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
++ FLPV A+P + + L+ A+++ L + +
Sbjct: 417 SNRFLPV---------------ASP-----FHSHLLVP-----ASDLINKDLVKNNVSFN 451
Query: 225 ----RMGVTNTI----VCNYDGNELPKVLGLNTVDRV----LLDAPCS-----GTGVISK 267
++ V +T + G+ +++ V + G G S
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 268 DESVKTSKSLE 278
+ T ++ +
Sbjct: 512 LGVL-THRNKD 521
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 32.2 bits (74), Expect = 0.17
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G + +A + I +++ S L + +GV N + DG++L
Sbjct: 53 GAFVSGMAKQNPDINYI-GIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGE 111
Query: 250 VDRVLL 255
+DR+ L
Sbjct: 112 IDRLYL 117
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 31.9 bits (73), Expect = 0.20
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 44/167 (26%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHRMGVTN- 230
P + + +D+ G + L +YA + + + NL R G+ +
Sbjct: 28 LAEPGKNDVAVDVGCGTG----GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDN 83
Query: 231 -TIVCNYDGNELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK 288
T++ + P+ L + +D + G+G L++I
Sbjct: 84 VTLME----GDAPEALCKIPDIDIAV----VGGSG-----------GELQEI-------- 116
Query: 289 QLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
+ ++ K GG I+ + + E + L+ +
Sbjct: 117 ------LRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDLGFDV 154
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 32.6 bits (75), Expect = 0.23
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE--AVIDYAL 328
+ K + + K Y +LI ++++ G I+ ST + +T ++ I+
Sbjct: 297 ARNKKEVFSVSK-DY--HKLIRQGLEIL----SENGLIIASTNAANMTVSQFKKQIEKGF 349
Query: 329 KKRDVKLV 336
K+ +
Sbjct: 350 GKQKHTYL 357
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 31.4 bits (72), Expect = 0.37
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G + +A + I E+ S + + + N + N D + L V
Sbjct: 50 GQFISGMAKQNPDINYI-GIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGE 108
Query: 250 VDRVLL 255
V RV L
Sbjct: 109 VKRVYL 114
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 31.1 bits (71), Expect = 0.47
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 30/143 (20%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYA---NEMKASR---------LKSLTANLHRMG 227
++D+ PG I KN I M K N+ +
Sbjct: 25 IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNIN 84
Query: 228 VTNTIVCNYDGNELPKVLGLNTVDRVLLD-APCSGTGVISKDESVKTSKSLEDIQKCSYL 286
+ + N +L ++L +D +L D A G D
Sbjct: 85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDD---------------HLN 128
Query: 287 QKQLILAAIDMVDANSKSGGYIV 309
+L L+ ++ GG +
Sbjct: 129 SCELTLSITHFMEQYINIGGTYI 151
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 30.1 bits (69), Expect = 0.70
Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKASRLKSLTANLHRMGVTNTIVCNYD 237
V+D+ AAPGG + Y+ + G I A M GV + D
Sbjct: 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIV-----------GVD-FLQG--D 70
Query: 238 ------GNELPKVLGLNTVDRVLLD-APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL 290
L + +G + V V+ D AP + +G + D L
Sbjct: 71 FRDELVMKALLERVGDSKVQVVMSDMAP-NMSGTPAVD---------------IPRAMYL 114
Query: 291 ILAAIDMVDANSKSGGYIV 309
+ A++M GG V
Sbjct: 115 VELALEMCRDVLAPGGSFV 133
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 30.7 bits (70), Expect = 0.82
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN---EAVIDYA 327
VK + L +++ L+ A+ ++ G++ S+CS + E A
Sbjct: 292 VKRPEELPAMKR-HL--VDLVREALRLL----AEEGFLWLSSCSYHLRLEDLLEVARRAA 344
Query: 328 LK-KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
R +++ Q +H + + ++
Sbjct: 345 ADLGRRLRV----HRVTYQPE----DHPWSLHIPESL 373
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 30.0 bits (68), Expect = 1.3
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 136 SKVGLVVYDSQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVID-MAAAP 189
G+ + +S +P+ P + G L A+ V+A+ E+V+ + + P
Sbjct: 236 CGCGIEISESALPV--KPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHP 293
Query: 190 GGK 192
GK
Sbjct: 294 LGK 296
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT 231
+ + RV+D+ A G + ++ G+ EM ++ ++ GV N
Sbjct: 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM----VEVASSFAQEKGVENV 71
Query: 232 IVCNYDGNELP 242
LP
Sbjct: 72 RFQQGTAESLP 82
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 29.2 bits (66), Expect = 2.1
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN---EAVIDYA 327
V+ L + Y K + + AI ++ GG ++ +CS ++T + + + D A
Sbjct: 305 VENKSQLMGACR-GY--KDINMLAIQLL----NEGGILLTFSCSGLMTSDLFQKIIADAA 357
Query: 328 LK-KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
+ RDV+ ++ RQ +H + +
Sbjct: 358 IDAGRDVQF----IEQFRQAA----DHPVIATYPEGL 386
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene
regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP:
c.22.1.1
Length = 225
Score = 28.9 bits (65), Expect = 2.3
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 34/126 (26%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGL--------------IYANEMKASRLKS 218
+ K V+D KT + +++N L Y N + R
Sbjct: 115 VKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGR--- 171
Query: 219 LTANLHRMGV--TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKS 276
NL + V + + +G + ++ GLN D ++ D V T
Sbjct: 172 ---NLPDVKVIIADNPNNSKNGEKAVRIDGLNVFD------------MLKYDYLVLTRDM 216
Query: 277 LEDIQK 282
+ I++
Sbjct: 217 VSKIEE 222
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 28.8 bits (65), Expect = 2.7
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYM---LQSASSFLPVMALAPQEKERVID-MAAAPGG 191
S VG++V ++ +PI + A+ VM +A + E ++ M G
Sbjct: 238 SNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKG 297
Query: 192 K 192
+
Sbjct: 298 R 298
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 29.0 bits (65), Expect = 3.0
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 21/90 (23%)
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D V+LD P V+ K L+ + +Y + A +++V K GG +V
Sbjct: 291 DIVVLDPP----------AFVQHEKDLKAGLR-AY--FNVNFAGLNLV----KDGGILVT 333
Query: 311 STCSIMVTEN---EAVIDYALK-KRDVKLV 336
+CS V + +I K + +K++
Sbjct: 334 CSCSQHVDLQMFKDMIIAAGAKAGKFLKML 363
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 4.1
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 27/117 (23%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFL 78
E ++ + + ++ ++R++S +LS K+++ +
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPLIRIVSGL-ELSDTKQKGKKFL----------------V 165
Query: 79 IGALVEMFPPVELMELIESFEKP-RPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
I E F E I + E P I N D D L + D +SK
Sbjct: 166 IAY--EPF------ENI-AIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 28.1 bits (63), Expect = 4.6
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 29/117 (24%)
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D V+LD P K K +E + +Y K++ L AI ++ K GG +
Sbjct: 281 DLVVLDPP----------AFAKGKKDVERAYR-AY--KEVNLRAIKLL----KEGGILAT 323
Query: 311 STCSIMVTEN---EAVIDYALK-KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
++CS +TE V + A R +++ ++ Q F +H + +T
Sbjct: 324 ASCSHHMTEPLFYAMVAEAAQDAHRLLRV----VEKRGQPF----DHPVLLNHPETH 372
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 28.4 bits (64), Expect = 4.6
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 136 SKVGLVVYDSQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVID-MAAAP 189
S VG+ +Y+ ++P+ G L A+ V+ + E+ ++ M +
Sbjct: 216 SGVGIKIYEEKLPV--KESVKSACEFMGIDFLHLANEGKVVVVVERDYAEKALEIMKSHE 273
Query: 190 GGK 192
GK
Sbjct: 274 YGK 276
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 28.0 bits (62), Expect = 5.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTG 204
+ + RVID+ GG Y AA + +G
Sbjct: 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSG 100
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 27.9 bits (63), Expect = 5.6
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 57 RKEYVQ---QLKLDLGSYYGYNEFLIG--------ALVEMFPPVELMELI 95
RKE+V L+ + F G L +F P E+ LI
Sbjct: 193 RKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLI 242
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 27.6 bits (61), Expect = 7.0
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+V++ G +T +A I + ++ L+ N + G+ N
Sbjct: 32 DTVYPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVK 90
Query: 233 VCNYDGNELPKVLGLNTVDRV 253
+ LP ++ D +
Sbjct: 91 FLQANIFSLP--FEDSSFDHI 109
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 27.7 bits (62), Expect = 7.0
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 136 SKVGLVVYDSQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVID-MAAAP 189
S+ V ++ VP+ G L A+ + L + E + + P
Sbjct: 237 SQAVCHVLETAVPV--RESVRNGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGP 294
Query: 190 GGK 192
G+
Sbjct: 295 HGE 297
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 27.9 bits (62), Expect = 7.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
P+M+ E V D+AA P A L+ NTG + EM
Sbjct: 290 PIMSEIQSE---VNDLAAIPH------ATLLLNTGSVAPPEM 322
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.5 bits (60), Expect = 8.1
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230
+ ER + + P T + + + + E++ + + +GV
Sbjct: 115 AALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGVDG 173
Query: 231 TIVCNYDGNELP 242
V D +
Sbjct: 174 VNVITGDETVID 185
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 27.1 bits (61), Expect = 9.7
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 160 YMLQSASSFLPVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI------Y 207
+M + + +PVM L P++++ ++D GG + I +I
Sbjct: 2 HMRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE 61
Query: 208 ANEMKASRLKSLTANLHRMGVTNTIV-CNYDGNELPKVL---GLNTVDRVLLD 256
+ +LK + + ++ +Y E +L G+ VD +L+D
Sbjct: 62 VLRIAEEKLKEFSDRV-------SLFKVSYR--EADFLLKTLGIEKVDGILMD 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,920,742
Number of extensions: 362943
Number of successful extensions: 983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 55
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)