RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016730
(384 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 208 bits (530), Expect = 2e-65
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 10/308 (3%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
GY++ +++ + + E+ EKP P C R NTLK +DL L +G
Sbjct: 12 LGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKR 70
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
W+K G + I +TPE++ G +Q ASS P +AL P+ E V DMAAAPGG
Sbjct: 71 -VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ + + ++ D
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV--EFD 187
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++ K GG +VYS
Sbjct: 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL----KPGGILVYS 243
Query: 312 TCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHN 371
TCS+ ENE VI +AL DV+L+P L +G ++ RR YP VH
Sbjct: 244 TCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIKNARRLYPDVHE 301
Query: 372 MDGFFVAK 379
GFF+AK
Sbjct: 302 TSGFFIAK 309
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 172 bits (435), Expect = 1e-51
Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKW 135
+L+ L + +P + ++E+ + P+ LR N R +L G+ P + +
Sbjct: 3 SWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADY 61
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTY 195
V ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGGKTT+
Sbjct: 62 PDA--VRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH 119
Query: 196 IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255
I + + A ++ RL + NL R+G+ T+ + G DR+LL
Sbjct: 120 ILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-RYPSQWCGEQQFDRILL 177
Query: 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315
DAPCS TGVI + +K + DI + + LQ +++ A + K+GG +VY+TCS+
Sbjct: 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLVYATCSV 233
Query: 316 MVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDG 374
+ EN I L++ D +L G + ++ P DG
Sbjct: 234 LPEENSLQIKAFLQRTADAELCETGTPE-----------------QPGKQNLPGAEEGDG 276
Query: 375 FFVAK 379
FF AK
Sbjct: 277 FFYAK 281
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 169 bits (428), Expect = 2e-50
Identities = 87/298 (29%), Positives = 129/298 (43%), Gaps = 32/298 (10%)
Query: 103 PICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVVYDSQ 146
P +R NTLKT D+ D +G + + L+V+ +Q
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 147 VPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLI 206
+ P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN G I
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 207 YANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT-VDRVLLDAPCSGTGVI 265
+A ++ A RL S+ L R GV+ + D + V +LLD CSG+G+
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 266 SKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
S+ + + + + Q++ + A+ +VYSTCS+ ENE V
Sbjct: 183 SRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ-----RLVYSTCSLCQEENEDV 237
Query: 324 IDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAK 379
+ AL++ +L P + +G F P E R P GFFVA
Sbjct: 238 VRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFVAV 289
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 55.6 bits (133), Expect = 3e-09
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 26/171 (15%)
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
+ + ER +D+ + GG + L + A + A L+ N G+ N
Sbjct: 139 LYMERFRGERALDVFSYAGG---FALHLALGFREVVAVDSSAEALRRAEENARLNGLGNV 195
Query: 232 IVCNYDGNELPK--VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ 289
V + +L + D V+LD P G D+++ K+
Sbjct: 196 RVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKK-------------DVERAYRAYKE 242
Query: 290 LILAAIDMVDANSKSGGYIVYSTCSIMVTEN--EAVIDYALK--KRDVKLV 336
+ L AI ++ K GG + ++CS +TE A++ A + R +++V
Sbjct: 243 VNLRAIKLL----KEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 48.0 bits (113), Expect = 1e-06
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDG 238
+RV+D+ GG I A + + + +++ N GV + +
Sbjct: 147 DRVLDVFTYTGGFA--IHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA 204
Query: 239 NELPKVLGL--NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID 296
E + L D V+LD P + K L+ + + A ++
Sbjct: 205 FEEMEKLQKKGEKFDIVVLDPPAFV----------QHEKDLKAGLRA---YFNVNFAGLN 251
Query: 297 MVDANSKSGGYIVYSTCSIMVTEN---EAVIDYALK-KRDVKLV 336
+V K GG +V +CS V + +I K + +K++
Sbjct: 252 LV----KDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 44.8 bits (105), Expect = 4e-06
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 170 PVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
PVM L P++++ ++D GG + I I ++ + L+ L
Sbjct: 9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKL 67
Query: 224 HRMGVTNTIVCN--YDGNELPKVLGLNTVDRVLLDAPCS 260
++ + + L K LG+ VD +L+D S
Sbjct: 68 KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 106
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 42.9 bits (100), Expect = 3e-05
Identities = 34/306 (11%), Positives = 83/306 (27%), Gaps = 42/306 (13%)
Query: 71 YYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLD 130
+ + G ++ + L SF + + L R +D
Sbjct: 32 FNQDGDSFGGVTIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVYPNFLGAYEKIRFKGID 91
Query: 131 PLSKWSKVGLV-------VYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVI 183
+S + M G ++ Q + A + V+
Sbjct: 92 NVSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGK--TVL 149
Query: 184 DMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243
++ + + +AA M + ++ A+ + +
Sbjct: 150 NLFSYTAAFS--VAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 207
Query: 244 VLGL----NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVD 299
T D +++D P + K + + K +LI ++++
Sbjct: 208 FKYARRHHLTYDIIIIDPPSFA----------RNKKEVFSVSKD---YHKLIRQGLEIL- 253
Query: 300 ANSKSGGYIVYSTCSIMVTEN--EAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHP 357
G I+ ST + +T + + I+ K+ + D + + +
Sbjct: 254 ---SENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL----DLQQLPS----DFAVNV 302
Query: 358 SLEKTR 363
E +
Sbjct: 303 QDESSN 308
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 41.7 bits (97), Expect = 1e-04
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT- 229
+ + + V++ + GG + +++ + + G + + E++ N +
Sbjct: 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW 150
Query: 230 ----------NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258
N + D + + + T D V LD
Sbjct: 151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 189
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 38.6 bits (89), Expect = 6e-04
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223
A+ + + + V+ + A G ++++ ++ G I+ E L+ L +
Sbjct: 59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118
Query: 224 HRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261
I+ + E + L + VD + D
Sbjct: 119 EERRNIVPILGDATKPEEYRAL-VPKVDVIFEDVAQPT 155
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 37.8 bits (87), Expect = 0.001
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
A+ L L + ERV+ + AA G +++A ++ IYA E A + L +
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVR 101
Query: 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259
++ + + + VD + D
Sbjct: 102 ERNNIIPLLFDASKPWKYSGI-VEKVDLIYQDIAQ 135
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 37.4 bits (86), Expect = 0.001
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 167 SFLPVM------ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220
+ +PV+ LA + +D G + +++ G + + +
Sbjct: 1 THVPVLYQEALDLLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQDPEAVAR-A 56
Query: 221 ANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262
LH G+T LG+ VD +L D S
Sbjct: 57 KGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSF 98
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 35.5 bits (81), Expect = 0.009
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRF 350
L A+ ++ G + ++ + + + L + V VP G FG +R
Sbjct: 307 LNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVP-GAAFGADDCIRL 364
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 33.3 bits (74), Expect = 0.041
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 292 LAAIDMVDANSKSGGYIVYSTCSIMVTEN----EAVIDYALKKRDVKLVPCGLDFGRQGF 347
+ + G + S + + + L++ +V+++P G F GF
Sbjct: 326 IGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLP-GTIFHAPGF 384
Query: 348 VRF----REHRFHPSLEKTRRF 365
R + ++E+ + F
Sbjct: 385 TRLTTTRPVEVYREAVERIKAF 406
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 31.4 bits (69), Expect = 0.16
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDF 342
+ AA ++ Y+ + + ++ A+ +++ V ++P G +
Sbjct: 269 NLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMP-GYTY 327
Query: 343 GRQG--FVRF 350
G +G FVR
Sbjct: 328 GEEGRGFVRL 337
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Length = 394
Score = 31.3 bits (69), Expect = 0.19
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 296 DMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFG--RQGFVRF 350
+ A G Y+ + + +++A+ ++ + K + G FG GF R
Sbjct: 315 PEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDE-GYIFGDGGIGFERI 370
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 30.9 bits (69), Expect = 0.20
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
MA + E V+DM A G + + + + A E K L N+H V +
Sbjct: 101 MAKVAKPDELVVDMFAGIGHLS--LPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR 158
Query: 232 I-VCNYDGNELPKVLGLNTVDRVLLDAPCS 260
+ N D + P N DR+L+
Sbjct: 159 MSAYNMDNRDFPGE---NIADRILMGYVVR 185
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 30.8 bits (69), Expect = 0.21
Identities = 10/64 (15%), Positives = 21/64 (32%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230
+M + ++++ G ++YI + G + E LK NL
Sbjct: 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 137
Query: 231 TIVC 234
+
Sbjct: 138 NVRT 141
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 31.1 bits (69), Expect = 0.22
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRF----REHRFHPSL 359
G + ++ ++ + L+++ V LVP G F + GFVR R +L
Sbjct: 311 EGAFYLFFKVRG---DDVKFCERLLEEKKVALVP-GSAFLKPGFVRLSFATSIERLTEAL 366
Query: 360 EKTRRF 365
++ F
Sbjct: 367 DRIEDF 372
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 30.2 bits (67), Expect = 0.29
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
P + + +D+ GG T + +YA + + + NL R G+ + +
Sbjct: 28 LAEPGKNDVAVDVGCGTGGVTLEL---AGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNV 84
Query: 233 -VCNYDGNELPKVLGLNTVDRVLLDA 257
+ D E + +D ++
Sbjct: 85 TLMEGDAPEAL--CKIPDIDIAVVGG 108
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.3 bits (62), Expect = 1.2
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 168 FLPVMALAPQEKERVIDMAAAPG-GKTTYIAALMKNTGLIYANE 210
+LP + V+ PG GK+T+I + + G ++ N
Sbjct: 2 YLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 45
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 27.9 bits (61), Expect = 2.1
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 304 SGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGR--QGFVRF 350
G + ++ ++ + LK+ V +VP G FG+ +G+VR
Sbjct: 315 KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVP-GSAFGKAGEGYVRI 362
>d1rwra_ b.80.1.11 (A:) Filamentous hemagglutinin FhaB, secretion
domain {Bordetella pertussis [TaxId: 520]}
Length = 297
Score = 27.0 bits (59), Expect = 3.7
Identities = 13/86 (15%), Positives = 25/86 (29%)
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
+ A G +A L+K G + + + K ++ A +R
Sbjct: 152 VNATGLGYFDVVARLVKLQGAVSSKQGKPLADIAVVAGANRYDHATRRATPIAAGARGAA 211
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDES 270
G +D A + +S
Sbjct: 212 AGAYAIDGTAAGAMYGKHITLVSSDS 237
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 26.4 bits (58), Expect = 5.6
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 177 QEKERVIDMAAAPGGKTTYIAALMKNTG 204
+ +V+D+ GG + Y L
Sbjct: 65 TPEGKVVDLGCGRGGWSYYCGGLKNVRE 92
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.4 bits (57), Expect = 6.2
Identities = 7/53 (13%), Positives = 13/53 (24%)
Query: 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
Y SFL + ++D G + L+ +
Sbjct: 8 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,418,600
Number of extensions: 66957
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 26
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)