BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016732
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 257 EMAQEFNRQLKDKVSQLRLQLPYG-AFTYVDVY---SVKYAL---------ISNAQNQGF 303
EMA EFNR+ DK+ L + Y TYVD Y S + AL I+ + +
Sbjct: 115 EMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMY 174
Query: 304 VDPMNFCCGSFYGYHIDC 321
VD + + + ID
Sbjct: 175 VDSIQAALKALEKWEIDL 192
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 257 EMAQEFNRQLKDKVSQLRLQLPYG-AFTYVDVY---SVKYAL---------ISNAQNQGF 303
EMA EFNR+ DK+ L + Y TYVD Y S + AL I+ + +
Sbjct: 73 EMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMY 132
Query: 304 VDPMNFCCGSFYGYHIDC 321
VD + + + ID
Sbjct: 133 VDSIQAALKALEKWEIDL 150
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 272 QLRLQLPYGAFTYVDVYSVKYALISNA---QNQGFVDPMNFCCGSFYGYHIDCGKKATVN 328
+L L +P+ + + V + + L + A N G VD + Y ++ N
Sbjct: 227 KLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYN 286
Query: 329 GTVYGNPCHHPSKYISWDGIHYSQAANLWVANRILNGSFS 368
T+ G+ C+ S +IS+D + +V R L G F+
Sbjct: 287 ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFA 326
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 272 QLRLQLPYGAFTYVDVYSVKYALISNA---QNQGFVDPMNFCCGSFYGYHIDCGKKATVN 328
+L L +P+ + + V + + L + A N G VD + Y ++ N
Sbjct: 227 KLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYN 286
Query: 329 GTVYGNPCHHPSKYISWDGIHYSQAANLWVANRILNGSFS 368
T+ G+ C+ S +IS+D + +V R L G F+
Sbjct: 287 ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFA 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,987,476
Number of Sequences: 62578
Number of extensions: 582950
Number of successful extensions: 954
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 5
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)