Query 016734
Match_columns 384
No_of_seqs 311 out of 2222
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05971 Methyltransf_10: Prot 100.0 4.5E-83 9.7E-88 620.7 21.8 278 13-346 4-299 (299)
2 PRK11727 23S rRNA mA1618 methy 100.0 2.3E-75 4.9E-80 574.6 28.6 290 7-350 7-313 (321)
3 KOG2912 Predicted DNA methylas 100.0 1.1E-73 2.4E-78 547.8 23.1 296 14-363 5-309 (419)
4 COG3129 Predicted SAM-dependen 100.0 6.3E-57 1.4E-61 417.1 19.0 261 36-350 1-280 (292)
5 COG2890 HemK Methylase of poly 100.0 7E-31 1.5E-35 255.2 22.3 198 70-343 76-276 (280)
6 PRK01544 bifunctional N5-gluta 100.0 3.6E-29 7.9E-34 261.1 22.3 209 70-341 79-304 (506)
7 TIGR00536 hemK_fam HemK family 100.0 1.2E-28 2.6E-33 239.6 22.5 201 70-342 78-281 (284)
8 PRK14966 unknown domain/N5-glu 100.0 3.1E-28 6.8E-33 246.5 22.7 198 70-342 218-417 (423)
9 KOG2904 Predicted methyltransf 99.9 2.7E-26 5.9E-31 218.1 19.0 209 70-340 110-324 (328)
10 PRK09328 N5-glutamine S-adenos 99.9 6.7E-25 1.4E-29 210.3 22.7 200 70-342 73-274 (275)
11 TIGR03533 L3_gln_methyl protei 99.9 5.6E-25 1.2E-29 214.2 21.7 190 70-335 85-277 (284)
12 PRK11805 N5-glutamine S-adenos 99.9 2.5E-24 5.4E-29 211.9 22.6 195 70-340 97-294 (307)
13 PLN02672 methionine S-methyltr 99.9 1.1E-24 2.5E-29 241.2 21.2 192 70-327 82-301 (1082)
14 TIGR03704 PrmC_rel_meth putati 99.9 5.4E-24 1.2E-28 203.8 20.1 183 70-323 50-234 (251)
15 TIGR03534 RF_mod_PrmC protein- 99.9 7.3E-23 1.6E-27 193.0 21.1 191 70-339 53-250 (251)
16 COG4123 Predicted O-methyltran 99.9 1.9E-21 4.1E-26 185.1 15.3 155 116-335 45-199 (248)
17 PF05175 MTS: Methyltransferas 99.8 5.8E-19 1.3E-23 159.2 18.8 159 75-330 2-162 (170)
18 PRK14967 putative methyltransf 99.7 2.5E-16 5.5E-21 147.7 20.3 172 73-323 5-178 (223)
19 TIGR00537 hemK_rel_arch HemK-r 99.7 1.5E-15 3.3E-20 137.4 19.1 158 83-324 1-160 (179)
20 PRK14968 putative methyltransf 99.6 1.8E-14 4E-19 129.7 19.1 167 80-327 2-171 (188)
21 PRK15001 SAM-dependent 23S rib 99.6 9E-15 2E-19 147.8 18.3 142 73-306 197-342 (378)
22 COG2813 RsmC 16S RNA G1207 met 99.6 5.8E-15 1.2E-19 143.7 15.4 128 116-328 159-286 (300)
23 PF13659 Methyltransf_26: Meth 99.6 3.6E-15 7.8E-20 124.6 11.9 115 117-305 2-116 (117)
24 KOG3191 Predicted N6-DNA-methy 99.6 1.5E-13 3.3E-18 124.6 17.4 165 85-323 20-187 (209)
25 PRK09489 rsmC 16S ribosomal RN 99.5 4.4E-13 9.6E-18 134.1 16.7 147 74-315 166-314 (342)
26 PRK10909 rsmD 16S rRNA m(2)G96 99.5 3.5E-13 7.7E-18 125.2 12.4 93 71-176 19-111 (199)
27 COG2263 Predicted RNA methylas 99.5 2.5E-12 5.5E-17 117.6 16.5 134 89-323 28-162 (198)
28 PHA03412 putative methyltransf 99.4 7.9E-13 1.7E-17 125.5 11.4 106 116-299 50-158 (241)
29 TIGR01177 conserved hypothetic 99.4 1.5E-11 3.2E-16 122.2 18.5 143 116-339 183-326 (329)
30 COG2264 PrmA Ribosomal protein 99.4 9.4E-12 2E-16 121.8 16.0 142 88-329 146-288 (300)
31 PRK11783 rlmL 23S rRNA m(2)G24 99.4 6.4E-12 1.4E-16 136.5 14.8 145 116-333 539-684 (702)
32 PRK15128 23S rRNA m(5)C1962 me 99.4 5.5E-12 1.2E-16 128.5 13.3 134 116-320 221-356 (396)
33 PHA03411 putative methyltransf 99.4 5.2E-12 1.1E-16 122.4 12.3 133 116-322 65-207 (279)
34 TIGR00138 gidB 16S rRNA methyl 99.4 2.3E-11 4.9E-16 111.3 15.6 126 116-331 43-171 (181)
35 PF06325 PrmA: Ribosomal prote 99.4 1.4E-11 3E-16 120.9 15.0 138 88-329 145-283 (295)
36 PRK08287 cobalt-precorrin-6Y C 99.4 4.6E-11 1E-15 108.9 17.4 128 116-332 32-159 (187)
37 PRK00107 gidB 16S rRNA methylt 99.3 3.2E-11 6.9E-16 111.1 15.8 125 116-330 46-170 (187)
38 PF12847 Methyltransf_18: Meth 99.3 2.7E-11 5.9E-16 100.1 13.8 60 116-176 2-61 (112)
39 PRK00517 prmA ribosomal protei 99.3 5.4E-11 1.2E-15 113.7 17.1 135 89-329 104-238 (250)
40 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.6E-11 7.8E-16 124.1 16.6 94 71-177 261-355 (443)
41 TIGR00406 prmA ribosomal prote 99.3 2.7E-10 5.8E-15 111.4 18.8 139 88-328 143-282 (288)
42 PRK00377 cbiT cobalt-precorrin 99.3 9.5E-11 2.1E-15 108.0 14.1 138 115-338 40-178 (198)
43 PF01170 UPF0020: Putative RNA 99.3 1.1E-10 2.3E-15 106.7 14.2 146 89-323 11-165 (179)
44 PLN02336 phosphoethanolamine N 99.2 2.3E-10 5E-15 118.7 16.8 86 69-176 238-323 (475)
45 PRK00121 trmB tRNA (guanine-N( 99.2 8.2E-11 1.8E-15 109.1 12.1 133 116-323 41-175 (202)
46 PRK03522 rumB 23S rRNA methylu 99.2 8.9E-11 1.9E-15 116.0 12.2 90 74-176 140-230 (315)
47 PF13847 Methyltransf_31: Meth 99.2 2.8E-10 6.1E-15 100.1 13.9 61 115-177 3-64 (152)
48 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.1E-10 2.3E-15 107.6 11.4 134 116-324 17-153 (194)
49 TIGR02752 MenG_heptapren 2-hep 99.2 1.3E-09 2.8E-14 102.0 18.6 59 116-176 46-105 (231)
50 TIGR02085 meth_trns_rumB 23S r 99.1 3.1E-10 6.7E-15 114.9 12.3 90 74-176 200-290 (374)
51 PLN02490 MPBQ/MSBQ methyltrans 99.1 3.5E-09 7.7E-14 105.9 19.6 80 83-176 90-169 (340)
52 TIGR00095 RNA methyltransferas 99.1 3.4E-10 7.3E-15 104.3 10.0 93 72-176 16-108 (189)
53 PRK14902 16S rRNA methyltransf 99.1 7.8E-10 1.7E-14 114.2 13.9 145 116-321 251-399 (444)
54 PLN02244 tocopherol O-methyltr 99.1 7.7E-09 1.7E-13 103.4 19.9 85 90-177 94-178 (340)
55 PRK10901 16S rRNA methyltransf 99.1 1.7E-09 3.6E-14 111.3 15.1 145 115-321 244-392 (427)
56 smart00650 rADc Ribosomal RNA 99.1 5.6E-10 1.2E-14 100.3 10.1 56 116-177 14-69 (169)
57 PRK11036 putative S-adenosyl-L 99.1 1.6E-09 3.5E-14 103.6 13.7 59 115-176 44-102 (255)
58 TIGR00479 rumA 23S rRNA (uraci 99.1 4.2E-09 9.1E-14 108.3 16.1 90 74-176 259-349 (431)
59 PLN02233 ubiquinone biosynthes 99.0 2.2E-08 4.7E-13 96.6 19.4 60 116-176 74-136 (261)
60 TIGR02469 CbiT precorrin-6Y C5 99.0 1.2E-08 2.5E-13 85.2 14.9 58 116-175 20-77 (124)
61 PRK15451 tRNA cmo(5)U34 methyl 99.0 4.1E-09 9E-14 100.5 13.4 60 116-176 57-118 (247)
62 PRK14896 ksgA 16S ribosomal RN 99.0 2.4E-09 5.1E-14 103.1 11.3 56 116-177 30-85 (258)
63 PRK11873 arsM arsenite S-adeno 99.0 1.9E-08 4.1E-13 96.8 17.6 60 115-176 77-137 (272)
64 PLN02396 hexaprenyldihydroxybe 99.0 1.9E-08 4.1E-13 100.1 18.0 108 57-175 77-188 (322)
65 TIGR00477 tehB tellurite resis 99.0 7.5E-09 1.6E-13 95.4 13.5 55 116-175 31-85 (195)
66 PTZ00338 dimethyladenosine tra 99.0 2.5E-09 5.5E-14 105.0 10.9 59 116-177 37-95 (294)
67 PRK07402 precorrin-6B methylas 99.0 1.1E-08 2.3E-13 94.0 14.2 59 116-176 41-99 (196)
68 TIGR00740 methyltransferase, p 99.0 2.3E-08 4.9E-13 94.6 16.8 61 116-177 54-116 (239)
69 PRK00274 ksgA 16S ribosomal RN 99.0 1.8E-09 3.8E-14 104.7 9.2 55 116-177 43-97 (272)
70 PRK14103 trans-aconitate 2-met 99.0 1.8E-08 3.9E-13 96.3 15.8 53 115-176 29-81 (255)
71 PRK04457 spermidine synthase; 99.0 1.2E-08 2.6E-13 98.6 14.0 75 93-176 52-126 (262)
72 smart00828 PKS_MT Methyltransf 99.0 2E-08 4.3E-13 93.6 14.9 58 118-176 2-59 (224)
73 TIGR00563 rsmB ribosomal RNA s 98.9 1.3E-08 2.8E-13 104.7 14.9 147 116-321 239-388 (426)
74 PF01209 Ubie_methyltran: ubiE 98.9 9.6E-09 2.1E-13 97.7 12.7 60 115-176 47-107 (233)
75 PRK11188 rrmJ 23S rRNA methylt 98.9 2.3E-08 5E-13 93.5 15.0 151 116-344 52-207 (209)
76 TIGR00446 nop2p NOL1/NOP2/sun 98.9 8.5E-09 1.8E-13 99.6 12.5 142 116-320 72-218 (264)
77 PRK11783 rlmL 23S rRNA m(2)G24 98.9 2.5E-08 5.3E-13 108.7 17.4 80 89-177 172-293 (702)
78 PRK12335 tellurite resistance 98.9 4E-08 8.6E-13 95.9 16.5 56 116-176 121-176 (287)
79 PRK13944 protein-L-isoaspartat 98.9 1.5E-08 3.3E-13 94.1 12.9 60 116-176 73-133 (205)
80 KOG3420 Predicted RNA methylas 98.9 1.8E-09 3.8E-14 95.2 5.6 58 115-177 48-106 (185)
81 COG2242 CobL Precorrin-6B meth 98.9 6.3E-08 1.4E-12 88.8 15.4 133 115-335 34-166 (187)
82 PF13649 Methyltransf_25: Meth 98.9 8.9E-09 1.9E-13 84.4 8.9 56 119-177 1-59 (101)
83 PTZ00098 phosphoethanolamine N 98.9 1E-07 2.2E-12 92.1 17.6 57 115-176 52-108 (263)
84 PLN02781 Probable caffeoyl-CoA 98.9 7.1E-09 1.5E-13 98.6 9.4 75 90-177 55-130 (234)
85 PRK11207 tellurite resistance 98.9 2.3E-08 5E-13 92.3 12.5 57 116-176 31-87 (197)
86 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.6E-13 103.6 11.4 107 58-176 68-181 (390)
87 PRK14903 16S rRNA methyltransf 98.9 1.6E-08 3.5E-13 104.3 12.5 145 116-321 238-386 (431)
88 PRK00216 ubiE ubiquinone/menaq 98.9 1.7E-07 3.7E-12 87.1 18.3 60 116-176 52-112 (239)
89 PLN02585 magnesium protoporphy 98.9 1.7E-08 3.6E-13 100.2 11.7 81 73-162 109-189 (315)
90 PF03602 Cons_hypoth95: Conser 98.9 7E-09 1.5E-13 95.3 8.2 89 73-176 9-101 (183)
91 PRK00811 spermidine synthase; 98.9 1.8E-07 4E-12 91.3 18.5 97 72-176 41-140 (283)
92 TIGR02021 BchM-ChlM magnesium 98.9 1.4E-07 3.1E-12 87.9 17.0 59 115-176 55-113 (219)
93 PRK05031 tRNA (uracil-5-)-meth 98.8 1.3E-08 2.9E-13 102.6 10.6 73 91-177 192-264 (362)
94 TIGR00080 pimt protein-L-isoas 98.8 3.5E-08 7.5E-13 92.1 12.0 60 115-176 77-137 (215)
95 PRK14901 16S rRNA methyltransf 98.8 5.2E-08 1.1E-12 100.5 13.9 147 116-321 253-404 (434)
96 TIGR00438 rrmJ cell division p 98.8 9.9E-08 2.1E-12 87.1 14.0 151 115-344 32-188 (188)
97 PRK14904 16S rRNA methyltransf 98.8 6.2E-08 1.3E-12 100.3 14.2 143 116-321 251-397 (445)
98 PRK07580 Mg-protoporphyrin IX 98.8 2.9E-07 6.3E-12 85.7 17.4 57 116-175 64-120 (230)
99 PRK08317 hypothetical protein; 98.8 5.1E-07 1.1E-11 83.5 18.5 76 89-176 2-78 (241)
100 COG2227 UbiG 2-polyprenyl-3-me 98.8 9.2E-09 2E-13 97.6 6.8 65 88-163 41-105 (243)
101 TIGR02143 trmA_only tRNA (urac 98.8 3.1E-08 6.6E-13 99.7 11.0 89 75-177 166-255 (353)
102 COG2226 UbiE Methylase involve 98.8 7.6E-08 1.6E-12 91.9 12.3 60 115-176 51-110 (238)
103 PRK01683 trans-aconitate 2-met 98.8 9.1E-08 2E-12 91.2 12.8 55 115-176 31-85 (258)
104 KOG1271 Methyltransferases [Ge 98.8 2.4E-07 5.2E-12 84.8 14.3 80 92-177 49-128 (227)
105 PRK06922 hypothetical protein; 98.8 1.9E-07 4.1E-12 99.9 16.0 58 116-176 419-476 (677)
106 COG0116 Predicted N6-adenine-s 98.8 3.8E-08 8.3E-13 99.1 10.2 60 117-177 193-291 (381)
107 PRK10258 biotin biosynthesis p 98.8 2.7E-07 5.8E-12 87.7 15.4 42 116-159 43-84 (251)
108 TIGR02716 C20_methyl_CrtF C-20 98.7 2.6E-07 5.7E-12 90.6 15.8 61 115-177 149-209 (306)
109 PRK04266 fibrillarin; Provisio 98.7 1.4E-06 3.1E-11 82.6 20.1 57 116-176 73-129 (226)
110 TIGR02987 met_A_Alw26 type II 98.7 5.6E-08 1.2E-12 102.5 11.3 59 115-175 31-97 (524)
111 PF08241 Methyltransf_11: Meth 98.7 1.4E-07 2.9E-12 74.6 10.9 51 120-176 1-51 (95)
112 PRK03612 spermidine synthase; 98.7 5.9E-08 1.3E-12 102.4 11.3 136 115-328 297-442 (521)
113 TIGR03587 Pse_Me-ase pseudamin 98.7 7.4E-08 1.6E-12 89.8 10.6 53 116-175 44-96 (204)
114 PRK05134 bifunctional 3-demeth 98.7 6.9E-07 1.5E-11 83.8 17.2 55 116-175 49-103 (233)
115 PF09445 Methyltransf_15: RNA 98.7 4.2E-07 9.1E-12 82.1 14.8 151 118-337 2-154 (163)
116 cd02440 AdoMet_MTases S-adenos 98.7 3.3E-07 7.2E-12 71.7 12.5 56 118-176 1-56 (107)
117 PF02384 N6_Mtase: N-6 DNA Met 98.7 1.9E-07 4.2E-12 91.5 13.4 61 115-176 46-114 (311)
118 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 3.2E-06 6.9E-11 77.8 18.8 58 115-176 39-97 (223)
119 COG2230 Cfa Cyclopropane fatty 98.6 1.7E-07 3.7E-12 91.4 10.6 62 115-178 72-133 (283)
120 TIGR02072 BioC biotin biosynth 98.6 5.9E-07 1.3E-11 83.3 13.4 55 116-176 35-89 (240)
121 TIGR00755 ksgA dimethyladenosi 98.6 1.6E-07 3.5E-12 89.9 9.8 57 115-177 29-85 (253)
122 PRK15068 tRNA mo(5)U34 methylt 98.6 1.2E-06 2.5E-11 87.3 16.2 60 115-176 122-181 (322)
123 PRK13942 protein-L-isoaspartat 98.6 4.3E-07 9.4E-12 84.9 12.2 59 116-176 77-136 (212)
124 COG2519 GCD14 tRNA(1-methylade 98.6 8.2E-07 1.8E-11 85.0 13.8 128 115-331 94-222 (256)
125 PRK06202 hypothetical protein; 98.6 1.3E-07 2.8E-12 89.1 7.9 49 115-163 60-112 (232)
126 PRK00312 pcm protein-L-isoaspa 98.6 7.1E-07 1.5E-11 82.9 12.7 58 115-176 78-135 (212)
127 PRK11705 cyclopropane fatty ac 98.6 8.3E-07 1.8E-11 90.4 13.8 54 116-175 168-221 (383)
128 PF08704 GCD14: tRNA methyltra 98.6 4E-06 8.7E-11 80.6 17.5 132 115-331 40-173 (247)
129 COG1092 Predicted SAM-dependen 98.6 4.3E-07 9.2E-12 92.5 11.0 132 116-318 218-351 (393)
130 PRK04338 N(2),N(2)-dimethylgua 98.5 1.8E-07 3.9E-12 95.2 8.3 58 117-176 59-116 (382)
131 PRK01581 speE spermidine synth 98.5 3.9E-06 8.5E-11 84.7 17.7 81 89-176 131-216 (374)
132 COG2265 TrmA SAM-dependent met 98.5 3E-07 6.5E-12 94.9 9.8 90 74-176 260-350 (432)
133 TIGR02081 metW methionine bios 98.5 8.6E-07 1.9E-11 81.3 11.7 51 116-176 14-64 (194)
134 PF01596 Methyltransf_3: O-met 98.5 3E-07 6.4E-12 86.1 8.4 75 89-176 31-106 (205)
135 TIGR00452 methyltransferase, p 98.5 3.4E-06 7.3E-11 83.8 15.7 135 26-175 38-179 (314)
136 PF02353 CMAS: Mycolic acid cy 98.5 4.3E-07 9.4E-12 88.4 9.2 61 115-177 62-122 (273)
137 PLN03075 nicotianamine synthas 98.5 5E-07 1.1E-11 88.8 9.4 62 115-177 123-187 (296)
138 PF10672 Methyltrans_SAM: S-ad 98.5 1.4E-06 3.1E-11 85.4 12.1 131 116-322 124-257 (286)
139 TIGR01983 UbiG ubiquinone bios 98.5 1.2E-05 2.5E-10 74.7 17.4 72 95-175 30-101 (224)
140 COG4122 Predicted O-methyltran 98.5 9E-07 2E-11 83.5 9.8 75 89-176 45-121 (219)
141 PRK11088 rrmA 23S rRNA methylt 98.5 2E-06 4.3E-11 83.2 12.6 54 116-176 86-142 (272)
142 PRK13943 protein-L-isoaspartat 98.5 1.1E-06 2.4E-11 87.5 10.9 59 116-176 81-140 (322)
143 PF05958 tRNA_U5-meth_tr: tRNA 98.5 9.1E-07 2E-11 89.1 10.4 89 74-176 164-253 (352)
144 PF03848 TehB: Tellurite resis 98.4 1.2E-06 2.7E-11 81.1 10.3 58 115-177 30-87 (192)
145 PLN02476 O-methyltransferase 98.4 8.1E-07 1.8E-11 86.7 9.5 76 89-177 104-180 (278)
146 PF02475 Met_10: Met-10+ like- 98.4 9.4E-07 2E-11 82.4 9.3 126 30-176 27-161 (200)
147 TIGR00417 speE spermidine synt 98.4 9.8E-06 2.1E-10 78.5 16.7 95 73-175 38-134 (270)
148 PLN02366 spermidine synthase 98.4 2E-05 4.4E-10 78.1 18.7 97 72-176 56-154 (308)
149 KOG1270 Methyltransferases [Co 98.4 3.1E-07 6.7E-12 88.2 5.2 52 116-169 90-141 (282)
150 PRK05785 hypothetical protein; 98.4 2.1E-06 4.6E-11 81.2 10.1 42 116-158 52-93 (226)
151 smart00138 MeTrc Methyltransfe 98.4 2.4E-06 5.2E-11 82.7 10.5 45 115-159 99-152 (264)
152 PLN02336 phosphoethanolamine N 98.4 3.6E-06 7.9E-11 87.4 12.3 55 116-176 38-92 (475)
153 COG2518 Pcm Protein-L-isoaspar 98.3 5.2E-06 1.1E-10 77.7 11.3 59 115-177 72-130 (209)
154 PF08242 Methyltransf_12: Meth 98.3 7.4E-08 1.6E-12 78.3 -1.0 44 120-163 1-44 (99)
155 PF01135 PCMT: Protein-L-isoas 98.3 7.4E-06 1.6E-10 76.9 12.3 88 74-176 44-132 (209)
156 COG0742 N6-adenine-specific me 98.3 3.3E-06 7.1E-11 77.8 9.5 90 73-176 10-102 (187)
157 KOG2187 tRNA uracil-5-methyltr 98.3 1.8E-06 3.8E-11 89.6 8.4 93 70-175 346-439 (534)
158 COG1041 Predicted DNA modifica 98.3 2.1E-05 4.5E-10 78.7 15.7 142 115-339 197-341 (347)
159 TIGR03438 probable methyltrans 98.3 3.1E-05 6.7E-10 76.2 15.8 61 116-177 64-125 (301)
160 PLN02589 caffeoyl-CoA O-methyl 98.2 5.6E-06 1.2E-10 79.6 9.0 76 89-177 65-141 (247)
161 COG2521 Predicted archaeal met 98.2 5.1E-06 1.1E-10 78.8 8.0 140 115-333 134-281 (287)
162 PF07021 MetW: Methionine bios 98.2 4.6E-06 1E-10 77.1 7.0 147 116-337 14-175 (193)
163 PF10294 Methyltransf_16: Puta 98.2 4.9E-06 1.1E-10 75.5 7.1 60 115-175 45-105 (173)
164 KOG1499 Protein arginine N-met 98.1 7.8E-06 1.7E-10 81.4 8.8 60 115-177 60-119 (346)
165 KOG1540 Ubiquinone biosynthesi 98.1 3.9E-05 8.4E-10 73.7 13.0 61 115-176 100-168 (296)
166 COG4106 Tam Trans-aconitate me 98.1 6.6E-06 1.4E-10 77.3 6.4 57 115-178 30-86 (257)
167 PF05401 NodS: Nodulation prot 98.0 2.1E-05 4.6E-10 73.0 9.0 57 115-177 43-99 (201)
168 PF05185 PRMT5: PRMT5 arginine 98.0 2E-05 4.2E-10 82.0 9.5 61 116-177 187-251 (448)
169 TIGR00308 TRM1 tRNA(guanine-26 98.0 1.2E-05 2.6E-10 81.7 7.8 59 116-176 45-104 (374)
170 TIGR01444 fkbM_fam methyltrans 98.0 1.8E-05 3.9E-10 68.3 7.8 58 118-177 1-58 (143)
171 PTZ00146 fibrillarin; Provisio 98.0 0.0004 8.7E-09 68.4 18.0 57 116-176 133-190 (293)
172 KOG1500 Protein arginine N-met 98.0 1.6E-05 3.5E-10 78.9 8.1 60 115-177 177-236 (517)
173 COG0030 KsgA Dimethyladenosine 98.0 3.3E-05 7.1E-10 74.7 9.8 57 116-178 31-87 (259)
174 KOG2899 Predicted methyltransf 98.0 2.1E-05 4.6E-10 75.0 8.0 49 114-162 57-105 (288)
175 KOG1541 Predicted protein carb 97.9 3.3E-05 7.2E-10 72.8 8.1 41 115-157 50-90 (270)
176 PRK13255 thiopurine S-methyltr 97.9 6.3E-05 1.4E-09 71.0 9.9 39 116-156 38-76 (218)
177 PF04816 DUF633: Family of unk 97.9 0.00011 2.4E-09 68.8 11.3 58 119-177 1-58 (205)
178 PF13489 Methyltransf_23: Meth 97.9 6.9E-05 1.5E-09 65.1 9.2 38 115-154 22-59 (161)
179 PLN02823 spermine synthase 97.9 0.0012 2.5E-08 66.4 18.6 96 72-176 68-166 (336)
180 PF02390 Methyltransf_4: Putat 97.9 8.9E-05 1.9E-09 68.8 9.8 58 118-177 20-77 (195)
181 COG0286 HsdM Type I restrictio 97.9 0.00013 2.9E-09 76.7 12.2 59 117-176 188-250 (489)
182 PF02527 GidB: rRNA small subu 97.8 0.00089 1.9E-08 61.7 15.7 150 91-333 28-179 (184)
183 PF00398 RrnaAD: Ribosomal RNA 97.8 0.00011 2.3E-09 71.0 9.8 72 92-178 16-87 (262)
184 PRK04148 hypothetical protein; 97.8 7.1E-05 1.5E-09 65.6 7.5 52 115-177 16-68 (134)
185 TIGR03840 TMPT_Se_Te thiopurin 97.8 8.3E-05 1.8E-09 69.9 8.0 61 116-178 35-105 (213)
186 KOG0820 Ribosomal RNA adenine 97.7 0.00011 2.4E-09 71.3 8.4 60 115-177 58-117 (315)
187 KOG2915 tRNA(1-methyladenosine 97.7 0.001 2.3E-08 64.6 14.6 100 68-178 51-168 (314)
188 COG2384 Predicted SAM-dependen 97.7 0.0012 2.5E-08 62.4 13.7 120 117-323 18-137 (226)
189 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00019 4.1E-09 70.9 8.5 59 116-178 20-79 (296)
190 COG2520 Predicted methyltransf 97.5 0.00038 8.3E-09 69.9 8.0 60 116-177 189-248 (341)
191 PF08003 Methyltransf_9: Prote 97.4 0.00017 3.6E-09 71.2 5.2 42 115-157 115-156 (315)
192 KOG4300 Predicted methyltransf 97.4 0.0015 3.3E-08 61.3 10.5 60 114-176 75-135 (252)
193 PF13679 Methyltransf_32: Meth 97.4 0.00082 1.8E-08 58.8 8.1 49 115-163 25-77 (141)
194 KOG1663 O-methyltransferase [S 97.3 0.0032 6.9E-08 59.8 11.7 101 56-178 33-136 (237)
195 KOG3010 Methyltransferase [Gen 97.3 0.00033 7.1E-09 66.9 5.1 58 86-158 17-74 (261)
196 COG0220 Predicted S-adenosylme 97.3 0.00079 1.7E-08 64.1 7.7 58 117-176 50-107 (227)
197 KOG2730 Methylase [General fun 97.2 0.00018 4E-09 67.8 2.7 60 116-178 95-154 (263)
198 PF03291 Pox_MCEL: mRNA cappin 97.2 0.0024 5.1E-08 64.1 10.7 43 115-159 62-105 (331)
199 PRK10742 putative methyltransf 97.2 0.0016 3.5E-08 62.7 8.7 58 117-176 90-154 (250)
200 PRK11933 yebU rRNA (cytosine-C 97.2 0.0033 7.1E-08 65.9 11.4 145 115-321 113-262 (470)
201 COG3897 Predicted methyltransf 97.1 0.00087 1.9E-08 62.3 5.5 57 115-175 79-135 (218)
202 PF07091 FmrO: Ribosomal RNA m 97.1 0.002 4.4E-08 61.9 7.9 118 24-177 47-164 (251)
203 PF11599 AviRa: RRNA methyltra 97.0 0.0016 3.4E-08 61.4 6.8 47 114-160 50-98 (246)
204 COG4076 Predicted RNA methylas 97.0 0.001 2.2E-08 61.6 5.0 58 117-178 34-91 (252)
205 PRK13256 thiopurine S-methyltr 97.0 0.0037 8.1E-08 59.5 9.0 40 116-157 44-83 (226)
206 PF05724 TPMT: Thiopurine S-me 96.9 0.0035 7.6E-08 59.2 8.5 40 115-156 37-76 (218)
207 PF01564 Spermine_synth: Sperm 96.9 0.019 4.2E-07 55.1 13.7 62 115-176 76-139 (246)
208 COG0357 GidB Predicted S-adeno 96.9 0.017 3.7E-07 54.6 12.8 78 91-175 47-125 (215)
209 PF01861 DUF43: Protein of unk 96.9 0.024 5.2E-07 54.4 13.5 60 115-178 44-103 (243)
210 COG0144 Sun tRNA and rRNA cyto 96.8 0.032 6.9E-07 56.5 14.7 148 115-321 156-308 (355)
211 PF00891 Methyltransf_2: O-met 96.7 0.0045 9.7E-08 58.5 7.3 55 115-178 100-154 (241)
212 PRK10611 chemotaxis methyltran 96.7 0.0039 8.5E-08 61.4 6.5 45 115-159 115-167 (287)
213 PF06080 DUF938: Protein of un 96.6 0.054 1.2E-06 50.8 13.6 46 118-163 28-73 (204)
214 KOG1501 Arginine N-methyltrans 96.6 0.0036 7.8E-08 64.4 6.2 60 114-175 65-124 (636)
215 TIGR00478 tly hemolysin TlyA f 96.5 0.0052 1.1E-07 58.5 5.8 39 115-154 75-113 (228)
216 COG4976 Predicted methyltransf 96.5 0.0014 3.1E-08 62.4 1.9 41 116-158 126-166 (287)
217 PF12147 Methyltransf_20: Puta 96.4 0.026 5.7E-07 55.6 10.4 64 114-178 134-199 (311)
218 KOG4058 Uncharacterized conser 96.4 0.005 1.1E-07 55.1 4.9 84 83-177 49-132 (199)
219 PF06962 rRNA_methylase: Putat 96.4 0.05 1.1E-06 48.2 11.2 115 141-327 1-120 (140)
220 PRK01544 bifunctional N5-gluta 96.4 0.011 2.3E-07 62.7 8.0 59 115-175 347-405 (506)
221 KOG2671 Putative RNA methylase 96.4 0.0027 5.9E-08 63.5 3.3 58 116-175 209-273 (421)
222 KOG2361 Predicted methyltransf 96.2 0.0081 1.8E-07 57.6 5.5 56 117-176 73-131 (264)
223 PLN02232 ubiquinone biosynthes 96.2 0.095 2.1E-06 46.7 12.1 35 143-177 1-36 (160)
224 COG0421 SpeE Spermidine syntha 95.8 0.048 1E-06 53.6 8.9 97 72-176 41-139 (282)
225 KOG1975 mRNA cap methyltransfe 95.5 0.057 1.2E-06 53.9 8.3 147 92-320 100-250 (389)
226 PF05148 Methyltransf_8: Hypot 95.4 0.3 6.5E-06 46.2 12.2 58 283-345 137-196 (219)
227 TIGR00497 hsdM type I restrict 95.4 0.071 1.5E-06 56.3 9.2 47 117-163 219-269 (501)
228 PF08123 DOT1: Histone methyla 95.3 0.087 1.9E-06 49.4 8.5 63 115-177 42-111 (205)
229 KOG3115 Methyltransferase-like 95.1 0.031 6.8E-07 52.5 4.7 70 86-163 39-108 (249)
230 cd00315 Cyt_C5_DNA_methylase C 95.0 0.59 1.3E-05 45.5 13.5 40 118-159 2-42 (275)
231 PF09243 Rsm22: Mitochondrial 94.8 0.1 2.2E-06 50.9 7.7 69 89-162 12-81 (274)
232 TIGR00006 S-adenosyl-methyltra 94.7 0.19 4.1E-06 50.0 9.5 59 116-177 21-79 (305)
233 PF05219 DREV: DREV methyltran 94.7 0.11 2.3E-06 50.5 7.4 84 61-153 44-130 (265)
234 PF01739 CheR: CheR methyltran 94.6 0.046 9.9E-07 50.9 4.6 44 115-158 31-83 (196)
235 COG0293 FtsJ 23S rRNA methylas 94.6 1.1 2.4E-05 42.1 13.9 152 116-346 46-203 (205)
236 PF01555 N6_N4_Mtase: DNA meth 94.6 0.12 2.7E-06 47.1 7.5 55 91-157 177-231 (231)
237 KOG1661 Protein-L-isoaspartate 94.5 0.077 1.7E-06 50.1 5.7 47 116-162 83-131 (237)
238 PF02005 TRM: N2,N2-dimethylgu 94.4 0.1 2.2E-06 53.4 7.0 61 115-176 49-111 (377)
239 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.0 0.17 3.7E-06 49.6 7.4 153 115-330 85-246 (283)
240 COG3963 Phospholipid N-methylt 93.8 0.3 6.6E-06 44.7 8.0 55 115-176 48-103 (194)
241 PF07669 Eco57I: Eco57I restri 93.7 0.095 2E-06 43.8 4.2 66 241-320 2-72 (106)
242 PRK11524 putative methyltransf 93.6 0.24 5.1E-06 48.4 7.5 47 114-162 207-253 (284)
243 COG1352 CheR Methylase of chem 93.4 0.13 2.7E-06 50.3 5.3 44 115-158 96-148 (268)
244 COG0500 SmtA SAM-dependent met 93.1 0.43 9.4E-06 37.8 7.2 55 119-176 52-107 (257)
245 PF03059 NAS: Nicotianamine sy 93.0 0.63 1.4E-05 45.7 9.4 85 88-176 96-183 (276)
246 PRK11524 putative methyltransf 92.9 0.36 7.8E-06 47.2 7.5 74 238-323 24-97 (284)
247 PHA01634 hypothetical protein 92.6 0.3 6.5E-06 42.9 5.8 47 115-163 28-75 (156)
248 KOG3045 Predicted RNA methylas 92.6 1.6 3.4E-05 42.8 11.3 42 283-324 243-286 (325)
249 PRK11760 putative 23S rRNA C24 92.3 0.43 9.3E-06 48.3 7.3 51 115-176 211-261 (357)
250 PF11968 DUF3321: Putative met 92.3 4.7 0.0001 38.3 13.7 43 286-328 126-180 (219)
251 TIGR03439 methyl_EasF probable 92.1 0.46 1E-05 47.6 7.3 60 116-177 77-142 (319)
252 PRK13699 putative methylase; P 91.8 0.81 1.7E-05 43.5 8.3 46 115-162 163-208 (227)
253 PF13578 Methyltransf_24: Meth 90.8 0.15 3.3E-06 41.6 2.0 55 120-176 1-58 (106)
254 COG1867 TRM1 N2,N2-dimethylgua 90.6 0.57 1.2E-05 47.7 6.2 58 116-175 53-110 (380)
255 PF01795 Methyltransf_5: MraW 90.5 0.5 1.1E-05 47.1 5.7 60 115-177 20-79 (310)
256 PRK00536 speE spermidine synth 90.3 1.4 3E-05 43.0 8.5 75 71-158 37-113 (262)
257 PF01728 FtsJ: FtsJ-like methy 90.2 0.22 4.9E-06 44.8 2.7 36 115-150 23-59 (181)
258 PRK13699 putative methylase; P 89.0 2.9 6.3E-05 39.7 9.4 77 238-326 17-93 (227)
259 PF07757 AdoMet_MTase: Predict 88.8 0.33 7.1E-06 41.2 2.4 32 115-148 58-89 (112)
260 PF01269 Fibrillarin: Fibrilla 87.9 26 0.00057 33.6 15.3 133 116-333 74-216 (229)
261 KOG2078 tRNA modification enzy 87.5 0.37 8E-06 49.9 2.4 59 116-177 250-309 (495)
262 PF04989 CmcI: Cephalosporin h 86.5 0.55 1.2E-05 44.2 2.8 60 115-177 32-95 (206)
263 COG0275 Predicted S-adenosylme 85.8 4.4 9.6E-05 40.4 8.8 59 116-177 24-83 (314)
264 KOG3201 Uncharacterized conser 85.7 0.35 7.6E-06 44.1 1.0 49 115-163 29-78 (201)
265 PRK10458 DNA cytosine methylas 84.6 4.3 9.2E-05 42.8 8.6 72 82-159 58-130 (467)
266 COG4262 Predicted spermidine s 84.5 3.3 7.1E-05 42.5 7.3 60 115-175 289-354 (508)
267 PF04672 Methyltransf_19: S-ad 84.4 2.3 5E-05 41.6 6.1 59 117-178 70-132 (267)
268 PF05050 Methyltransf_21: Meth 84.0 2.8 6.1E-05 36.1 6.0 54 121-175 1-60 (167)
269 PF00145 DNA_methylase: C-5 cy 82.8 2.3 5.1E-05 41.0 5.5 41 118-160 2-43 (335)
270 PF03141 Methyltransf_29: Puta 82.1 2.6 5.6E-05 44.6 5.7 56 74-136 82-138 (506)
271 PF05891 Methyltransf_PK: AdoM 82.0 6.9 0.00015 37.2 8.0 46 115-161 55-100 (218)
272 PRK01747 mnmC bifunctional tRN 79.0 9 0.00019 41.8 8.9 59 271-343 181-239 (662)
273 PF02636 Methyltransf_28: Puta 78.1 2.9 6.3E-05 39.9 4.3 47 115-161 18-72 (252)
274 KOG1201 Hydroxysteroid 17-beta 77.2 8.1 0.00017 38.4 7.1 59 115-178 37-97 (300)
275 COG1063 Tdh Threonine dehydrog 76.9 6.6 0.00014 39.4 6.7 81 77-157 127-211 (350)
276 KOG1253 tRNA methyltransferase 76.0 1.3 2.8E-05 46.7 1.3 62 114-176 108-170 (525)
277 PF04445 SAM_MT: Putative SAM- 75.7 11 0.00024 36.2 7.4 59 117-177 77-142 (234)
278 KOG1709 Guanidinoacetate methy 74.4 43 0.00094 32.2 10.8 57 115-175 101-157 (271)
279 PF07942 N2227: N2227-like pro 73.5 19 0.0004 35.4 8.5 69 89-160 31-99 (270)
280 KOG2940 Predicted methyltransf 72.3 3.9 8.4E-05 39.5 3.4 42 116-158 73-114 (325)
281 PRK05854 short chain dehydroge 71.0 13 0.00027 36.5 6.9 61 116-178 14-76 (313)
282 COG1568 Predicted methyltransf 70.8 11 0.00024 37.4 6.2 60 115-177 152-211 (354)
283 KOG1227 Putative methyltransfe 70.2 1.3 2.8E-05 44.1 -0.3 60 116-177 195-255 (351)
284 TIGR00675 dcm DNA-methyltransf 69.9 7.4 0.00016 38.6 5.0 39 119-159 1-40 (315)
285 KOG2793 Putative N2,N2-dimethy 69.8 7.1 0.00015 37.8 4.6 36 115-151 86-121 (248)
286 KOG2651 rRNA adenine N-6-methy 69.4 7.7 0.00017 40.0 4.9 41 117-158 155-195 (476)
287 COG1064 AdhP Zn-dependent alco 68.4 7.1 0.00015 39.5 4.5 79 76-158 125-209 (339)
288 COG0270 Dcm Site-specific DNA 67.5 11 0.00023 37.7 5.6 43 116-160 3-46 (328)
289 KOG2352 Predicted spermine/spe 66.0 3.4 7.3E-05 43.5 1.7 49 114-162 294-342 (482)
290 PRK08340 glucose-1-dehydrogena 66.0 13 0.00028 34.8 5.6 55 118-177 2-58 (259)
291 KOG3178 Hydroxyindole-O-methyl 65.0 11 0.00024 38.2 5.1 60 116-183 178-237 (342)
292 COG1565 Uncharacterized conser 63.6 32 0.00069 35.2 8.0 63 94-162 62-132 (370)
293 KOG2920 Predicted methyltransf 63.5 5.5 0.00012 39.3 2.6 38 115-153 116-153 (282)
294 PF01234 NNMT_PNMT_TEMT: NNMT/ 62.8 4.7 0.0001 39.2 2.0 44 115-159 56-99 (256)
295 PRK06125 short chain dehydroge 62.6 36 0.00078 31.7 7.9 59 116-177 7-67 (259)
296 PF07279 DUF1442: Protein of u 62.5 63 0.0014 30.8 9.3 60 115-175 41-104 (218)
297 KOG3987 Uncharacterized conser 62.1 2.2 4.7E-05 40.6 -0.5 41 115-157 112-152 (288)
298 PF02086 MethyltransfD12: D12 61.2 15 0.00032 34.6 5.0 56 94-160 8-63 (260)
299 PRK08862 short chain dehydroge 60.7 20 0.00043 33.4 5.7 58 116-177 5-64 (227)
300 PRK07063 short chain dehydroge 59.5 57 0.0012 30.3 8.7 61 116-178 7-69 (260)
301 PRK05599 hypothetical protein; 59.0 26 0.00057 32.7 6.3 58 118-178 2-60 (246)
302 PRK12826 3-ketoacyl-(acyl-carr 59.0 26 0.00057 32.0 6.2 58 116-177 6-65 (251)
303 PRK07478 short chain dehydroge 58.5 27 0.00059 32.4 6.3 57 117-177 7-65 (254)
304 PRK08303 short chain dehydroge 57.9 23 0.0005 34.7 5.9 58 116-177 8-77 (305)
305 KOG2352 Predicted spermine/spe 56.7 96 0.0021 33.0 10.3 55 117-176 50-105 (482)
306 PF03514 GRAS: GRAS domain fam 56.4 29 0.00062 35.5 6.5 48 113-160 108-166 (374)
307 PF11899 DUF3419: Protein of u 56.3 25 0.00054 36.1 6.0 43 116-160 36-78 (380)
308 PRK06197 short chain dehydroge 56.2 36 0.00079 32.8 6.9 62 115-178 15-78 (306)
309 PF01555 N6_N4_Mtase: DNA meth 55.6 24 0.00052 31.8 5.3 75 242-323 1-77 (231)
310 PRK08339 short chain dehydroge 54.8 73 0.0016 30.0 8.6 60 116-178 8-69 (263)
311 PF12368 DUF3650: Protein of u 54.2 4.4 9.4E-05 26.1 0.1 8 16-23 4-11 (28)
312 PRK06124 gluconate 5-dehydroge 54.0 81 0.0018 29.1 8.7 60 115-178 10-71 (256)
313 PRK07791 short chain dehydroge 53.9 31 0.00068 33.1 6.0 58 116-177 6-74 (286)
314 PRK05872 short chain dehydroge 53.9 26 0.00057 33.8 5.5 57 116-177 9-67 (296)
315 TIGR01500 sepiapter_red sepiap 53.8 68 0.0015 29.9 8.2 58 118-177 2-65 (256)
316 PRK07102 short chain dehydroge 53.7 71 0.0015 29.3 8.2 58 118-178 3-62 (243)
317 cd08283 FDH_like_1 Glutathione 52.8 32 0.0007 34.5 6.2 43 116-158 185-228 (386)
318 PF04378 RsmJ: Ribosomal RNA s 52.5 48 0.001 32.1 6.9 146 91-332 46-194 (245)
319 PF12692 Methyltransf_17: S-ad 52.0 37 0.0008 30.7 5.5 46 93-148 16-61 (160)
320 PRK07326 short chain dehydroge 51.7 79 0.0017 28.7 8.1 57 116-177 6-64 (237)
321 PTZ00357 methyltransferase; Pr 51.6 51 0.0011 36.9 7.5 63 116-178 701-774 (1072)
322 PRK08589 short chain dehydroge 51.4 41 0.00088 31.8 6.3 57 116-177 6-64 (272)
323 PRK07677 short chain dehydroge 51.0 88 0.0019 28.9 8.4 57 118-178 3-61 (252)
324 PRK06172 short chain dehydroge 51.0 95 0.0021 28.6 8.6 59 116-178 7-67 (253)
325 PRK05867 short chain dehydroge 50.1 93 0.002 28.8 8.5 58 116-177 9-68 (253)
326 PRK12481 2-deoxy-D-gluconate 3 49.9 36 0.00078 31.8 5.6 57 116-178 8-66 (251)
327 KOG4589 Cell division protein 49.7 25 0.00053 33.2 4.2 33 116-148 70-103 (232)
328 COG5379 BtaA S-adenosylmethion 49.6 40 0.00086 33.9 5.9 46 115-162 63-108 (414)
329 PRK08251 short chain dehydroge 49.1 1.1E+02 0.0023 28.1 8.7 60 117-178 3-64 (248)
330 PRK07062 short chain dehydroge 48.9 1E+02 0.0022 28.7 8.5 61 116-178 8-70 (265)
331 PRK08213 gluconate 5-dehydroge 48.8 1.1E+02 0.0023 28.4 8.7 59 116-178 12-72 (259)
332 PRK07666 fabG 3-ketoacyl-(acyl 48.4 1.1E+02 0.0024 27.8 8.6 58 116-177 7-66 (239)
333 PRK08416 7-alpha-hydroxysteroi 47.9 51 0.0011 30.8 6.4 59 116-177 8-69 (260)
334 PRK07533 enoyl-(acyl carrier p 47.7 38 0.00083 31.8 5.5 58 116-177 10-70 (258)
335 PRK06949 short chain dehydroge 47.6 1.2E+02 0.0026 27.9 8.8 58 116-177 9-68 (258)
336 PRK07454 short chain dehydroge 47.0 1.3E+02 0.0028 27.5 8.8 59 116-178 6-66 (241)
337 PRK07814 short chain dehydroge 46.7 1.2E+02 0.0026 28.4 8.7 58 116-177 10-69 (263)
338 PRK07523 gluconate 5-dehydroge 46.6 1.2E+02 0.0026 28.0 8.6 59 116-178 10-70 (255)
339 PRK09242 tropinone reductase; 46.5 1.2E+02 0.0027 28.0 8.7 61 116-178 9-71 (257)
340 PRK06940 short chain dehydroge 46.4 67 0.0015 30.5 7.0 55 119-178 5-60 (275)
341 PF13561 adh_short_C2: Enoyl-( 46.0 13 0.00029 34.3 2.0 51 123-177 1-54 (241)
342 PF02254 TrkA_N: TrkA-N domain 45.9 39 0.00084 27.5 4.6 45 124-177 4-50 (116)
343 PRK06914 short chain dehydroge 45.7 1.3E+02 0.0028 28.3 8.7 60 117-178 4-65 (280)
344 PRK07576 short chain dehydroge 45.7 1.3E+02 0.0027 28.3 8.7 58 116-177 9-68 (264)
345 PRK05876 short chain dehydroge 43.1 1.3E+02 0.0029 28.5 8.5 59 116-178 6-66 (275)
346 PRK12384 sorbitol-6-phosphate 43.0 1.5E+02 0.0032 27.4 8.6 59 117-177 3-63 (259)
347 PRK07097 gluconate 5-dehydroge 42.6 1.5E+02 0.0032 27.7 8.6 59 116-178 10-70 (265)
348 PLN02989 cinnamyl-alcohol dehy 42.6 89 0.0019 30.2 7.3 61 116-178 5-67 (325)
349 PRK05855 short chain dehydroge 42.0 61 0.0013 33.8 6.4 95 79-178 267-375 (582)
350 PRK05786 fabG 3-ketoacyl-(acyl 41.9 1.6E+02 0.0035 26.7 8.6 58 116-178 5-64 (238)
351 PRK06181 short chain dehydroge 41.9 1.5E+02 0.0033 27.4 8.6 57 118-178 3-61 (263)
352 COG2961 ComJ Protein involved 41.9 3.5E+02 0.0077 26.6 11.8 174 48-330 42-223 (279)
353 PF13651 EcoRI_methylase: Aden 41.7 12 0.00027 37.6 1.1 13 241-253 135-147 (336)
354 COG1743 Adenine-specific DNA m 41.6 57 0.0012 36.7 6.1 48 280-327 560-614 (875)
355 PRK07904 short chain dehydroge 41.1 1.3E+02 0.0028 28.2 7.9 60 115-177 7-70 (253)
356 PRK06200 2,3-dihydroxy-2,3-dih 40.4 70 0.0015 29.8 6.0 55 116-177 6-62 (263)
357 PRK05866 short chain dehydroge 40.2 1.6E+02 0.0035 28.3 8.7 58 117-178 41-100 (293)
358 KOG0022 Alcohol dehydrogenase, 40.1 61 0.0013 32.9 5.6 42 116-157 193-235 (375)
359 PRK07035 short chain dehydroge 39.8 1.8E+02 0.0039 26.7 8.6 58 116-177 8-67 (252)
360 PF05206 TRM13: Methyltransfer 39.8 44 0.00096 32.5 4.6 34 116-149 19-57 (259)
361 PRK07792 fabG 3-ketoacyl-(acyl 39.5 71 0.0015 31.0 6.1 59 115-177 11-72 (306)
362 PRK05650 short chain dehydroge 39.5 1.6E+02 0.0035 27.5 8.4 56 118-177 2-59 (270)
363 PRK08217 fabG 3-ketoacyl-(acyl 39.4 1.9E+02 0.0041 26.3 8.7 58 116-177 5-64 (253)
364 KOG0024 Sorbitol dehydrogenase 39.3 59 0.0013 33.0 5.4 42 116-157 170-212 (354)
365 PLN02668 indole-3-acetate carb 38.6 22 0.00047 36.7 2.3 21 115-135 63-83 (386)
366 PLN02780 ketoreductase/ oxidor 38.3 1.2E+02 0.0027 29.8 7.6 60 116-177 53-114 (320)
367 PRK07890 short chain dehydroge 38.2 2E+02 0.0043 26.4 8.6 57 117-177 6-64 (258)
368 PRK06196 oxidoreductase; Provi 38.1 71 0.0015 31.0 5.8 54 116-177 26-81 (315)
369 COG1189 Predicted rRNA methyla 37.9 44 0.00095 32.4 4.1 38 115-153 79-116 (245)
370 PRK08690 enoyl-(acyl carrier p 37.7 71 0.0015 30.1 5.6 57 117-177 7-66 (261)
371 PRK06194 hypothetical protein; 37.7 1.9E+02 0.004 27.2 8.5 58 117-178 7-66 (287)
372 PRK06139 short chain dehydroge 37.6 1.7E+02 0.0036 29.1 8.4 59 116-178 7-67 (330)
373 PRK08993 2-deoxy-D-gluconate 3 37.2 69 0.0015 29.8 5.4 56 116-177 10-67 (253)
374 PRK08277 D-mannonate oxidoredu 37.2 2E+02 0.0043 27.0 8.6 59 116-178 10-70 (278)
375 PRK12429 3-hydroxybutyrate deh 36.9 1.3E+02 0.0028 27.5 7.2 58 117-178 5-64 (258)
376 PLN03209 translocon at the inn 36.5 1.3E+02 0.0029 32.7 7.9 62 115-177 79-148 (576)
377 PRK12743 oxidoreductase; Provi 36.2 97 0.0021 28.8 6.2 57 117-177 3-62 (256)
378 PRK07066 3-hydroxybutyryl-CoA 35.8 68 0.0015 32.1 5.3 40 118-159 9-50 (321)
379 PLN02253 xanthoxin dehydrogena 35.8 1.7E+02 0.0036 27.5 7.8 58 116-178 18-77 (280)
380 PRK07041 short chain dehydroge 35.8 95 0.0021 28.1 6.0 49 125-177 5-55 (230)
381 TIGR01832 kduD 2-deoxy-D-gluco 35.7 94 0.002 28.5 6.0 56 116-177 5-62 (248)
382 PRK08945 putative oxoacyl-(acy 35.6 1.9E+02 0.004 26.6 8.0 60 115-177 11-72 (247)
383 KOG0822 Protein kinase inhibit 35.5 79 0.0017 34.2 5.8 61 116-178 368-432 (649)
384 PRK09424 pntA NAD(P) transhydr 35.0 85 0.0018 33.6 6.1 43 115-157 164-206 (509)
385 PRK09186 flagellin modificatio 35.0 2.2E+02 0.0048 26.1 8.4 60 117-178 5-66 (256)
386 PRK05875 short chain dehydroge 34.9 2.4E+02 0.0051 26.3 8.7 60 116-177 7-68 (276)
387 PF00107 ADH_zinc_N: Zinc-bind 34.8 67 0.0015 26.4 4.4 31 126-157 2-32 (130)
388 KOG1331 Predicted methyltransf 34.6 13 0.00029 36.7 0.1 38 116-157 46-83 (293)
389 TIGR03206 benzo_BadH 2-hydroxy 34.4 2.5E+02 0.0054 25.5 8.6 57 117-177 4-62 (250)
390 PRK12824 acetoacetyl-CoA reduc 33.9 2E+02 0.0043 26.0 7.8 58 118-178 4-63 (245)
391 PRK07109 short chain dehydroge 33.7 2.3E+02 0.0051 27.9 8.8 59 116-178 8-68 (334)
392 PRK08226 short chain dehydroge 33.0 2.4E+02 0.0051 26.1 8.3 58 116-178 6-65 (263)
393 PF03721 UDPG_MGDP_dh_N: UDP-g 32.7 92 0.002 28.4 5.3 30 125-154 7-38 (185)
394 KOG0725 Reductases with broad 32.7 1.3E+02 0.0028 29.2 6.6 61 116-177 8-70 (270)
395 PF02737 3HCDH_N: 3-hydroxyacy 32.6 1.4E+02 0.003 27.1 6.4 39 121-161 4-44 (180)
396 PLN02662 cinnamyl-alcohol dehy 32.6 1.6E+02 0.0034 28.2 7.2 61 116-178 4-66 (322)
397 PF07101 DUF1363: Protein of u 32.5 16 0.00034 30.5 0.2 11 119-129 6-16 (124)
398 PRK07984 enoyl-(acyl carrier p 32.3 92 0.002 29.5 5.5 57 117-177 7-66 (262)
399 PRK08643 acetoin reductase; Va 32.1 2.7E+02 0.0058 25.6 8.5 57 118-178 4-62 (256)
400 KOG1205 Predicted dehydrogenas 31.6 89 0.0019 30.9 5.2 61 116-178 12-74 (282)
401 PRK08267 short chain dehydroge 31.4 2.1E+02 0.0045 26.5 7.6 55 118-178 3-59 (260)
402 COG0863 DNA modification methy 31.3 1.7E+02 0.0037 27.9 7.2 46 115-162 222-267 (302)
403 COG1062 AdhC Zn-dependent alco 31.3 1.1E+02 0.0024 31.3 5.9 42 116-157 186-228 (366)
404 TIGR01712 phage_N6A_met phage 30.7 24 0.00052 32.2 1.0 9 244-252 64-72 (166)
405 PRK08594 enoyl-(acyl carrier p 30.7 99 0.0022 29.0 5.3 61 116-178 7-70 (257)
406 KOG2798 Putative trehalase [Ca 30.4 1.9E+02 0.0041 29.5 7.2 55 114-171 149-203 (369)
407 PRK08264 short chain dehydroge 30.4 1.4E+02 0.0031 27.0 6.3 51 116-177 6-59 (238)
408 PRK09072 short chain dehydroge 30.3 2.7E+02 0.0059 25.8 8.3 57 117-178 6-64 (263)
409 PRK06113 7-alpha-hydroxysteroi 30.3 3.1E+02 0.0067 25.2 8.6 59 116-178 11-71 (255)
410 PRK06720 hypothetical protein; 29.5 3.8E+02 0.0082 23.9 8.7 58 116-177 16-75 (169)
411 PRK06505 enoyl-(acyl carrier p 29.4 1.1E+02 0.0024 29.1 5.4 58 116-177 7-67 (271)
412 PRK07231 fabG 3-ketoacyl-(acyl 29.4 3E+02 0.0064 25.0 8.2 57 117-178 6-64 (251)
413 PRK06129 3-hydroxyacyl-CoA deh 29.3 87 0.0019 30.7 4.8 40 119-160 5-46 (308)
414 PRK07889 enoyl-(acyl carrier p 29.1 98 0.0021 29.0 5.0 56 116-177 7-67 (256)
415 PLN02545 3-hydroxybutyryl-CoA 29.0 93 0.002 30.1 4.9 40 118-159 6-47 (295)
416 PRK06079 enoyl-(acyl carrier p 28.7 89 0.0019 29.2 4.6 56 116-177 7-65 (252)
417 PRK14045 1-aminocyclopropane-1 28.5 2.2E+02 0.0048 28.2 7.6 73 72-149 147-221 (329)
418 PRK07774 short chain dehydroge 28.5 3.8E+02 0.0081 24.4 8.8 57 117-177 7-65 (250)
419 COG4301 Uncharacterized conser 28.1 2.6E+02 0.0057 27.6 7.6 44 116-159 79-126 (321)
420 KOG2782 Putative SAM dependent 28.0 57 0.0012 31.5 3.1 46 115-160 43-88 (303)
421 TIGR01963 PHB_DH 3-hydroxybuty 27.8 3.4E+02 0.0073 24.7 8.3 57 118-178 3-61 (255)
422 PRK08159 enoyl-(acyl carrier p 27.7 1.4E+02 0.003 28.4 5.8 57 117-177 11-70 (272)
423 PRK06935 2-deoxy-D-gluconate 3 27.6 3E+02 0.0064 25.4 8.0 58 116-178 15-74 (258)
424 KOG1122 tRNA and rRNA cytosine 27.5 1.4E+02 0.003 31.4 6.0 60 114-175 240-300 (460)
425 PRK08703 short chain dehydroge 27.4 2.7E+02 0.0059 25.3 7.6 58 116-176 6-65 (239)
426 PRK13394 3-hydroxybutyrate deh 27.3 3.3E+02 0.0072 24.9 8.2 58 117-178 8-67 (262)
427 PRK08085 gluconate 5-dehydroge 27.2 3.6E+02 0.0079 24.7 8.5 59 116-178 9-69 (254)
428 KOG1269 SAM-dependent methyltr 27.2 56 0.0012 33.4 3.1 56 118-175 113-168 (364)
429 PRK06138 short chain dehydroge 27.0 3.3E+02 0.007 24.8 8.1 58 116-178 5-64 (252)
430 PF03686 UPF0146: Uncharacteri 26.5 95 0.0021 27.1 3.9 34 116-150 14-47 (127)
431 PRK06603 enoyl-(acyl carrier p 26.4 1.7E+02 0.0036 27.5 6.1 57 117-177 9-68 (260)
432 TIGR02685 pter_reduc_Leis pter 26.2 4.7E+02 0.01 24.3 9.1 58 118-178 3-63 (267)
433 PRK06483 dihydromonapterin red 26.2 1.5E+02 0.0033 27.0 5.6 52 117-177 3-56 (236)
434 PLN02896 cinnamyl-alcohol dehy 26.2 3E+02 0.0064 27.0 8.1 58 115-177 9-68 (353)
435 PRK12939 short chain dehydroge 26.0 4.3E+02 0.0093 23.9 8.7 59 116-178 7-67 (250)
436 PRK08415 enoyl-(acyl carrier p 25.9 1.7E+02 0.0037 27.9 6.1 57 117-177 6-65 (274)
437 KOG1098 Putative SAM-dependent 25.5 61 0.0013 35.6 3.1 34 116-149 45-79 (780)
438 PRK07453 protochlorophyllide o 25.3 3.8E+02 0.0083 25.9 8.6 59 116-178 6-66 (322)
439 PRK07024 short chain dehydroge 25.0 3E+02 0.0065 25.4 7.5 55 118-177 4-60 (257)
440 TIGR02415 23BDH acetoin reduct 24.5 4.3E+02 0.0093 24.0 8.4 57 118-178 2-60 (254)
441 PRK08293 3-hydroxybutyryl-CoA 23.9 2.1E+02 0.0046 27.6 6.4 41 118-160 5-47 (287)
442 PF05869 Dam: DNA N-6-adenine- 23.9 36 0.00077 31.4 0.9 11 243-253 65-75 (181)
443 PF03492 Methyltransf_7: SAM d 23.4 97 0.0021 31.1 4.0 22 114-135 15-36 (334)
444 KOG1209 1-Acyl dihydroxyaceton 23.0 1.1E+02 0.0023 29.7 3.9 37 114-150 5-43 (289)
445 PRK09291 short chain dehydroge 22.7 4.6E+02 0.01 23.9 8.3 57 118-178 4-62 (257)
446 PRK12748 3-ketoacyl-(acyl-carr 22.7 1.9E+02 0.0042 26.7 5.7 57 117-177 6-77 (256)
447 PRK07775 short chain dehydroge 22.5 5.2E+02 0.011 24.2 8.7 58 117-178 11-70 (274)
448 PRK06484 short chain dehydroge 22.5 1.6E+02 0.0036 30.5 5.7 55 116-177 5-61 (520)
449 PRK08265 short chain dehydroge 22.3 4.3E+02 0.0092 24.6 8.0 56 116-178 6-63 (261)
450 PRK07067 sorbitol dehydrogenas 22.2 3.7E+02 0.0079 24.7 7.5 55 117-178 7-63 (257)
451 PRK07417 arogenate dehydrogena 22.2 1.4E+02 0.003 28.8 4.7 33 125-157 7-41 (279)
452 PRK12823 benD 1,6-dihydroxycyc 22.2 4.5E+02 0.0097 24.1 8.1 57 116-177 8-66 (260)
453 PRK12745 3-ketoacyl-(acyl-carr 21.7 5.1E+02 0.011 23.6 8.3 57 118-178 4-63 (256)
454 PRK14106 murD UDP-N-acetylmura 21.7 3.6E+02 0.0079 27.5 7.9 32 116-149 5-38 (450)
455 PRK06997 enoyl-(acyl carrier p 21.7 1.8E+02 0.004 27.3 5.3 32 117-148 7-41 (260)
456 PRK15057 UDP-glucose 6-dehydro 21.1 1.1E+02 0.0023 31.5 3.8 33 125-157 7-40 (388)
457 PLN00141 Tic62-NAD(P)-related 20.7 1.9E+02 0.0041 26.9 5.2 54 116-177 17-72 (251)
458 KOG3357 Uncharacterized conser 20.7 23 0.00051 31.0 -0.9 56 29-85 29-92 (167)
459 KOG1208 Dehydrogenases with di 20.5 3.3E+02 0.0072 27.2 7.1 88 113-248 32-121 (314)
460 COG0863 DNA modification methy 20.4 3.2E+02 0.0069 26.0 6.8 84 239-324 33-118 (302)
461 cd05188 MDR Medium chain reduc 20.3 2.6E+02 0.0055 25.4 5.9 41 115-156 134-175 (271)
462 PRK07831 short chain dehydroge 20.3 6E+02 0.013 23.4 8.5 60 117-178 18-80 (262)
463 PLN02353 probable UDP-glucose 20.1 1.2E+02 0.0026 32.1 4.1 35 119-155 4-42 (473)
No 1
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=100.00 E-value=4.5e-83 Score=620.65 Aligned_cols=278 Identities=52% Similarity=0.952 Sum_probs=175.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcE-EEecCCCccCCCcCH
Q 016734 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (384)
Q Consensus 13 ~~~mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~-~~vp~~~LiPrvP~r 91 (384)
++.|||||+|++ +|||++|+++||+|++||..+.+|+.+|||+|++|+++||+|||++||||+ |++|+++|||+||+|
T Consensus 4 ~~~mHprN~~~~-~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R 82 (299)
T PF05971_consen 4 KKSMHPRNPYKD-RYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNR 82 (299)
T ss_dssp ----------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHH
T ss_pred cCCCCCCCCCCC-CCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchh
Confidence 578999999985 789999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (384)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~ 171 (384)
++||+||+|+|...... ....+++||||||+.|||++|+.+.++|+|+|+|||+.+++.|++|+++|..|+++|++
T Consensus 83 ~nYi~~i~DlL~~~~~~----~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPG----IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHT--TCG----CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred HHHHHHHHHHhhccccc----cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 99999999999864311 12368999999999999999999999999999999999999999999999339999999
Q ss_pred EEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc
Q 016734 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (384)
Q Consensus 172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy 251 (384)
+++.... .+|.++....+.|||+||||||
T Consensus 159 ~~~~~~~---------------------------------------------------~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 159 RKQKNPD---------------------------------------------------NIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EE--ST----------------------------------------------------SSTTTSTT--S-EEEEEE----
T ss_pred EEcCCcc---------------------------------------------------ccchhhhcccceeeEEecCCcc
Confidence 9875211 2455555566799999999999
Q ss_pred ccchhhhc---------c--------CCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHH
Q 016734 252 FESMEEAG---------L--------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI 314 (384)
Q Consensus 252 ~~s~~~~~---------~--------~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~ 314 (384)
|++.+++. + +|..+|+|+..||+|+|||++||++||+||..+.+++.|||+||||+++++.|+
T Consensus 188 y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~ 267 (299)
T PF05971_consen 188 YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLK 267 (299)
T ss_dssp -SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHH
T ss_pred ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHH
Confidence 99987642 1 578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEEEeeCCCeeEEEEEEecCC
Q 016734 315 SKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP 346 (384)
Q Consensus 315 ~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~ 346 (384)
+.|++.|+.++++++|.||+|.||+|||||++
T Consensus 268 ~~L~~~~~~~~~~~e~~QG~t~rw~lAWsF~d 299 (299)
T PF05971_consen 268 KELKKLGATNYKVTEMCQGQTKRWILAWSFLD 299 (299)
T ss_dssp HHHHHTT-SEEEEEEEEETTEEEEEEEEES--
T ss_pred HHHHhcCCceEEEEEccCCceEEEEEEEeccC
Confidence 99999999999999999999999999999974
No 2
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=100.00 E-value=2.3e-75 Score=574.59 Aligned_cols=290 Identities=39% Similarity=0.724 Sum_probs=253.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcE-EEecCCCcc
Q 016734 7 RRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLC 85 (384)
Q Consensus 7 ~~~~~~~~~mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~-~~vp~~~Li 85 (384)
...+..++.|||||+|+ ++|||++|+++||+|++||..+..|+.+|||+||+||++||+|||+++|||+ |++|+++||
T Consensus 7 ~~~~~~~~~~h~rn~~~-~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~Lc 85 (321)
T PRK11727 7 KKMSAQKPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLC 85 (321)
T ss_pred cccCccccCCCCCCcCC-CCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcC
Confidence 33444557899999998 5899999999999999999999999999999999999999999999999998 799999999
Q ss_pred CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC-CC
Q 016734 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-PH 164 (384)
Q Consensus 86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n-~~ 164 (384)
|+||+|++||+|+.|+|........ +.+...++||||||+|||+++|+.+.++|+|+|+|||+.|+++|++|++.| +
T Consensus 86 PpiP~R~~Yi~~l~dll~~~~~~~~-p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~- 163 (321)
T PRK11727 86 PPIPGRADYIHHLADLLAEDNGGVI-PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG- 163 (321)
T ss_pred CCCCcHHHHHHHHHHHhcccccccC-CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC-
Confidence 9999999999999999976421111 123568999999999999999999999999999999999999999999999 7
Q ss_pred CCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEE
Q 016734 165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF 244 (384)
Q Consensus 165 l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~ 244 (384)
++++|.++...... .++.++....+.||+
T Consensus 164 l~~~I~~~~~~~~~---------------------------------------------------~i~~~i~~~~~~fDl 192 (321)
T PRK11727 164 LNGAIRLRLQKDSK---------------------------------------------------AIFKGIIHKNERFDA 192 (321)
T ss_pred CcCcEEEEEccchh---------------------------------------------------hhhhcccccCCceEE
Confidence 88999987643211 123333224578999
Q ss_pred EEECCCcccchhhhc---------c----C--CccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCC
Q 016734 245 CICNPPFFESMEEAG---------L----N--PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN 309 (384)
Q Consensus 245 i~cNPPy~~s~~~~~---------~----~--p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~ 309 (384)
||||||||++.+++. + + +.+.|+|...||+|+|||+.||.+|+++|..++.+++|||+|+||+++
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCC
Confidence 999999999887631 0 1 146788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecCCcccc
Q 016734 310 LKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350 (384)
Q Consensus 310 l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~~~~~~ 350 (384)
++.|++.|++.|+++++++||.||++.||+|||||....++
T Consensus 273 l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~ 313 (321)
T PRK11727 273 LPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQR 313 (321)
T ss_pred HHHHHHHHHHcCCceEEEEEEeCCCeeeEEEEeecCCHHHh
Confidence 99999999999999999999999999999999999987654
No 3
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=100.00 E-value=1.1e-73 Score=547.80 Aligned_cols=296 Identities=52% Similarity=0.906 Sum_probs=263.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHH
Q 016734 14 PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSN 93 (384)
Q Consensus 14 ~~mHprN~y~~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~ 93 (384)
+.|||||+|+++||||+.||..||+|++||+.+.+|+++|||+|++|+|+||++||++||||.+++|+|+|||+||+|++
T Consensus 5 k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~n 84 (419)
T KOG2912|consen 5 KSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLN 84 (419)
T ss_pred cccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEE
Q 016734 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK 173 (384)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~ 173 (384)
|||||.|||.... ..++...+++|||||+.||+.+++.+..+|.++|+|||...+..|+.|+..|+ ++++|.+++
T Consensus 85 YihwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~ 159 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVK 159 (419)
T ss_pred hHHHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEE
Confidence 9999999998652 12233345899999999999999999999999999999999999999999998 999999998
Q ss_pred cCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCccc
Q 016734 174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFE 253 (384)
Q Consensus 174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~ 253 (384)
..... ...+|. +.. ..+..|||||||||||+
T Consensus 160 ~~~~k----------------tll~d~-------------------------------~~~--~~e~~ydFcMcNPPFfe 190 (419)
T KOG2912|consen 160 VEPQK----------------TLLMDA-------------------------------LKE--ESEIIYDFCMCNPPFFE 190 (419)
T ss_pred ecchh----------------hcchhh-------------------------------hcc--CccceeeEEecCCchhh
Confidence 75211 000110 100 12467999999999999
Q ss_pred chhhhcc---------CCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeE
Q 016734 254 SMEEAGL---------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (384)
Q Consensus 254 s~~~~~~---------~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~ 324 (384)
...|++. .|..+|.|...|++..|||++||.+|+.+|..++++++|||+|+||+++++.|+..|+..|++.
T Consensus 191 ~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~k 270 (419)
T KOG2912|consen 191 NQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGVTK 270 (419)
T ss_pred chhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHHHHHHcCCce
Confidence 8776643 3666889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCeeEEEEEEecCCccccccCCCccccccce
Q 016734 325 VKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS 363 (384)
Q Consensus 325 v~~~e~~qG~t~Rw~~AWsf~~~~~~~~~~~~~~~~~~~ 363 (384)
|.++||+||+|.||++||||++...+.+-|.+..++-.|
T Consensus 271 v~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~s 309 (419)
T KOG2912|consen 271 VKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKS 309 (419)
T ss_pred EEEEEeeccccceeeEEeeecccccccCCchhcccchhh
Confidence 999999999999999999999999998888877777665
No 4
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=6.3e-57 Score=417.07 Aligned_cols=261 Identities=36% Similarity=0.711 Sum_probs=235.8
Q ss_pred CCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcE-EEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCC
Q 016734 36 YPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNG 114 (384)
Q Consensus 36 ~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~-~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~ 114 (384)
.|+|..|+..+..|+.+|||.||.||+.||||||.+||+++ |++|+|.|||+||+|++|||+++|||....- ...+
T Consensus 1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g---~~~~ 77 (292)
T COG3129 1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSG---QIPG 77 (292)
T ss_pred CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCC---CCCc
Confidence 48999999999999999999999999999999999999997 9999999999999999999999999986431 1224
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
+..++||||+|+.|||++++.+.++|+++|+|||+.+++.|+.++..|..++..|+++.+...+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~---------------- 141 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD---------------- 141 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc----------------
Confidence 6789999999999999999999999999999999999999999999995599999998876321
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhc---------c-----
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG---------L----- 260 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~---------~----- 260 (384)
.+|.++....|.||++||||||+.+.+++. +
T Consensus 142 -----------------------------------~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~ 186 (292)
T COG3129 142 -----------------------------------AIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELG 186 (292)
T ss_pred -----------------------------------ccccccccccceeeeEecCCCcchhHHHHHhcccCCccccccccc
Confidence 367777767899999999999999987641 1
Q ss_pred ----CCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCee
Q 016734 261 ----NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTC 336 (384)
Q Consensus 261 ----~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~ 336 (384)
.|...|+|...|++|+|||.+||.+|++||..+.+++.|||+++++.+++..+.+.|+..|...+.+.++.||++.
T Consensus 187 ~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~emaqgqK~ 266 (292)
T COG3129 187 PTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEMAQGQKQ 266 (292)
T ss_pred ccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhhcccccc
Confidence 1445688999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEEEecCCcccc
Q 016734 337 RWGLAWSFVPPARK 350 (384)
Q Consensus 337 Rw~~AWsf~~~~~~ 350 (384)
...|||||.++.++
T Consensus 267 SrfIaWtf~d~eqr 280 (292)
T COG3129 267 SRFIAWTFMDDEQR 280 (292)
T ss_pred ceeEEEEeeCHHHH
Confidence 77899999987654
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7e-31 Score=255.21 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=160.1
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
.+|+|++|.+.++||+|| |+|+.+++++...+... .. +|||||||||||++.++.+.+.++|+|+|||+
T Consensus 76 ~~f~gl~~~v~~~vliPr-~dTe~Lve~~l~~~~~~---------~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~ 144 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPR-PDTELLVEAALALLLQL---------DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISP 144 (280)
T ss_pred CeecceeeeeCCCceecC-CchHHHHHHHHHhhhhc---------CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCH
Confidence 579999999999999999 99999999987444321 12 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
+|+++|++|++.|+ + .++.++.+|.
T Consensus 145 ~Al~~A~~Na~~~~-l-~~~~~~~~dl----------------------------------------------------- 169 (280)
T COG2890 145 DALALARENAERNG-L-VRVLVVQSDL----------------------------------------------------- 169 (280)
T ss_pred HHHHHHHHHHHHcC-C-ccEEEEeeec-----------------------------------------------------
Confidence 99999999999998 6 5666666542
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK 307 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~ 307 (384)
|.++ .++||+|||||||.+.. .....|... ..+....+.|| ++.++++|+.++..+++.++|+.+++| .
T Consensus 170 --f~~~---~~~fDlIVsNPPYip~~-~~~~~~~~~--~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~ 240 (280)
T COG2890 170 --FEPL---RGKFDLIVSNPPYIPAE-DPELLPEVV--RYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-L 240 (280)
T ss_pred --cccc---CCceeEEEeCCCCCCCc-ccccChhhh--ccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-C
Confidence 3333 34899999999999986 221111110 12222233333 599999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHcC-CeEEEEEEeeCCCeeEEEEEEe
Q 016734 308 SNLKFLISKLRKVG-VTIVKTTEFVQGQTCRWGLAWS 343 (384)
Q Consensus 308 ~~l~~l~~~L~~~g-~~~v~~~e~~qG~t~Rw~~AWs 343 (384)
.+.+.+.+++.+.| +..+.+.++..|+ .|-+++|.
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~-~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGR-DRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCc-eEEEEEEe
Confidence 99999999999999 7888999999887 77777764
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.97 E-value=3.6e-29 Score=261.07 Aligned_cols=209 Identities=18% Similarity=0.197 Sum_probs=164.8
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCC---C-----C-----CCC--CCCCCCeEEEECCcccHHHHHHH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI---I-----P-----TTS--RNGDKVKGFDIGTGANCIYPLLG 134 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~---~-----~-----~~~--~~~~~~~vLDIGtGsG~I~~~La 134 (384)
++|||++|.|.++||||| |+||.+|+++.+.+.... . + ... ......+|||+|||||++++.++
T Consensus 79 ~~F~g~~f~V~~~VLIPR-peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPR-SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred CEEcCcEEEeCCCcccCC-CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 779999999999999999 999999999987653100 0 0 000 01134589999999999999999
Q ss_pred hhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCC
Q 016734 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (384)
Q Consensus 135 ~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (384)
...++++|+|+|+|+.|++.|++|++.++ +.+++.++++|..+
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~------------------------------------ 200 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFE------------------------------------ 200 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcC-Cccceeeeecchhh------------------------------------
Confidence 88899999999999999999999999997 77889998887421
Q ss_pred CCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHH
Q 016734 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVA 292 (384)
Q Consensus 215 ~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~ 292 (384)
.+ ..++||+|||||||++..+.....+.. ...+..+++.|| ++.+++++++++..
T Consensus 201 -------------------~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v--~~~EP~~AL~gg~dGl~~~~~il~~a~~ 257 (506)
T PRK01544 201 -------------------NI--EKQKFDFIVSNPPYISHSEKSEMAIET--INYEPSIALFAEEDGLQAYFIIAENAKQ 257 (506)
T ss_pred -------------------hC--cCCCccEEEECCCCCCchhhhhcCchh--hccCcHHHhcCCccHHHHHHHHHHHHHH
Confidence 11 135799999999999976543221111 012223334444 58999999999999
Q ss_pred hhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEE
Q 016734 293 LKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341 (384)
Q Consensus 293 l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~A 341 (384)
+++++|++.+++| .++.+.+.+++.+.|+..+.+.+|.+|+ .|.+++
T Consensus 258 ~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~~g~-~R~v~~ 304 (506)
T PRK01544 258 FLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDLQGH-SRVILI 304 (506)
T ss_pred hccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecCCCC-ceEEEe
Confidence 9999999999999 8899999999999999999999999998 886654
No 7
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.96 E-value=1.2e-28 Score=239.55 Aligned_cols=201 Identities=23% Similarity=0.318 Sum_probs=163.3
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
++|||++|.+++++|||| |+|+.+++++.+.+... ....+|||+|||+|++++.++...++++++|+|+|+
T Consensus 78 ~~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~~--------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~ 148 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPR-PETEELVEKALASLISQ--------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP 148 (284)
T ss_pred ceEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhhc--------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence 779999999999999999 99999999987654321 112589999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
.|++.|++|++.++ +.+++.++++|..+
T Consensus 149 ~al~~a~~n~~~~~-~~~~v~~~~~d~~~--------------------------------------------------- 176 (284)
T TIGR00536 149 DALAVAEENAEKNQ-LEHRVEFIQSNLFE--------------------------------------------------- 176 (284)
T ss_pred HHHHHHHHHHHHcC-CCCcEEEEECchhc---------------------------------------------------
Confidence 99999999999997 77779999887431
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK 307 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~ 307 (384)
.+ ...+||+|||||||++..+.... +... ..+...++.|| ++.++++++.++..+++++|++.+++| .
T Consensus 177 ----~~--~~~~fDlIvsNPPyi~~~~~~~~-~~~~--~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~ 246 (284)
T TIGR00536 177 ----PL--AGQKIDIIVSNPPYIDEEDLADL-PNVV--RFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-N 246 (284)
T ss_pred ----cC--cCCCccEEEECCCCCCcchhhcC-Cccc--ccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-c
Confidence 11 12379999999999988653322 1110 12223333444 589999999999999999999999999 7
Q ss_pred CCHHHHHHHHH-HcCCeEEEEEEeeCCCeeEEEEEE
Q 016734 308 SNLKFLISKLR-KVGVTIVKTTEFVQGQTCRWGLAW 342 (384)
Q Consensus 308 ~~l~~l~~~L~-~~g~~~v~~~e~~qG~t~Rw~~AW 342 (384)
.+...+.+++. +.|+..+.+.+|..|+ .|+++++
T Consensus 247 ~q~~~~~~~~~~~~~~~~~~~~~D~~g~-~R~~~~~ 281 (284)
T TIGR00536 247 WQQKSLKELLRIKFTWYDVENGRDLNGK-ERVVLGF 281 (284)
T ss_pred cHHHHHHHHHHhcCCCceeEEecCCCCC-ceEEEEE
Confidence 89999999998 5789899999999997 8988875
No 8
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.96 E-value=3.1e-28 Score=246.50 Aligned_cols=198 Identities=17% Similarity=0.143 Sum_probs=162.0
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
++|||++|.+++++|||| |+|+.+++++.+.+. ...++||+|||||++++.++...++++++|+|+|+
T Consensus 218 ~~F~G~~f~V~p~vLIPR-peTE~LVe~aL~~l~-----------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~ 285 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPR-PETEHLVEAVLARLP-----------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP 285 (423)
T ss_pred eeecCcEEEeCCCccCCC-ccHHHHHHHhhhccC-----------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence 679999999999999999 999999999886542 12489999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
+|++.|++|++.++ . ++.++++|..+.
T Consensus 286 ~ALe~AreNa~~~g-~--rV~fi~gDl~e~-------------------------------------------------- 312 (423)
T PRK14966 286 PALETARKNAADLG-A--RVEFAHGSWFDT-------------------------------------------------- 312 (423)
T ss_pred HHHHHHHHHHHHcC-C--cEEEEEcchhcc--------------------------------------------------
Confidence 99999999999886 3 699998875320
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK 307 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~ 307 (384)
.+ ...++||+|+|||||++..+....++.. ..+..+++.|| ++.|+++|++++..+++++|++.+++| .
T Consensus 313 -~l----~~~~~FDLIVSNPPYI~~~e~~l~~~~v---~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~ 383 (423)
T PRK14966 313 -DM----PSEGKWDIIVSNPPYIENGDKHLLQGDL---RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F 383 (423)
T ss_pred -cc----ccCCCccEEEECCCCCCcchhhhcchhh---hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c
Confidence 00 0134799999999999876532211111 11223344454 499999999999999999999999999 7
Q ss_pred CCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEE
Q 016734 308 SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (384)
Q Consensus 308 ~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AW 342 (384)
+|.+.+.+++++.|+..+++.+|..|+ .|.+++.
T Consensus 384 ~Q~e~V~~ll~~~Gf~~v~v~kDl~G~-dR~v~~~ 417 (423)
T PRK14966 384 DQGAAVRGVLAENGFSGVETLPDLAGL-DRVTLGK 417 (423)
T ss_pred cHHHHHHHHHHHCCCcEEEEEEcCCCC-cEEEEEE
Confidence 899999999999999999999999998 8988875
No 9
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.94 E-value=2.7e-26 Score=218.08 Aligned_cols=209 Identities=16% Similarity=0.187 Sum_probs=155.7
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
+.|-++++.+-+|||||| ||||.+|+|+.|.+..... .++..+||+|||||||++.+++..+..+|+|||.++
T Consensus 110 ~~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~~------~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 110 QPFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSEH------SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK 182 (328)
T ss_pred CccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhhh------cccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence 457788999999999999 9999999999998875421 234479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
.|+.+|.+|++++. +.++|.+++-+... +.|.
T Consensus 183 ~Ai~La~eN~qr~~-l~g~i~v~~~~me~-----------------------------------d~~~------------ 214 (328)
T KOG2904|consen 183 AAIKLAKENAQRLK-LSGRIEVIHNIMES-----------------------------------DASD------------ 214 (328)
T ss_pred HHHHHHHHHHHHHh-hcCceEEEeccccc-----------------------------------cccc------------
Confidence 99999999999998 99999998765321 0000
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK 307 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~ 307 (384)
......+++|+++|||||+.+.+...+.|.. .-.++.+++.|| +..++..+..-+.+.+..+|++.++++-.
T Consensus 215 ----~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV--~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 215 ----EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV--RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ----ccccccCceeEEecCCCcccccchhhcCchh--eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 0001357899999999999998755443322 223444555555 47888888888888888899988888722
Q ss_pred CC----HHHHHHHHHHcCCeEEEEEEeeCCCeeEEEE
Q 016734 308 SN----LKFLISKLRKVGVTIVKTTEFVQGQTCRWGL 340 (384)
Q Consensus 308 ~~----l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~ 340 (384)
.+ ...+...+.+--...+++..+..|+ .|+++
T Consensus 289 ~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~-~Rfv~ 324 (328)
T KOG2904|consen 289 KEHSYLVRIWMISLKDDSNGKAAVVSDFAGR-PRFVI 324 (328)
T ss_pred ccCcHHHHHHHHhchhhccchhheeecccCC-cceEE
Confidence 22 2333333334444567788887776 66554
No 10
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.94 E-value=6.7e-25 Score=210.26 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=159.8
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
.+|||++|.+.+++|+|| |+|+.+++++.+.+.. ....+|||+|||+|+++..++...+.++++|+|+++
T Consensus 73 ~~f~~~~~~~~~~~lipr-~~te~l~~~~~~~~~~---------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~ 142 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPR-PETEELVEWALEALLL---------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP 142 (275)
T ss_pred ceEcCcEEEECCCceeCC-CCcHHHHHHHHHhccc---------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH
Confidence 679999999999999999 9999999999865432 234689999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
.+++.|++|+. +. ...++.++.+|..+
T Consensus 143 ~~l~~a~~n~~-~~-~~~~i~~~~~d~~~--------------------------------------------------- 169 (275)
T PRK09328 143 EALAVARRNAK-HG-LGARVEFLQGDWFE--------------------------------------------------- 169 (275)
T ss_pred HHHHHHHHHHH-hC-CCCcEEEEEccccC---------------------------------------------------
Confidence 99999999998 33 45579998887421
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK 307 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~ 307 (384)
.+ ..++||+|+|||||++..+.....+... ..+....+.|| ++.++.++++++..+++.+|++.+++| .
T Consensus 170 ----~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~--~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~ 240 (275)
T PRK09328 170 ----PL--PGGRFDLIVSNPPYIPEADIHLLQPEVR--DHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y 240 (275)
T ss_pred ----cC--CCCceeEEEECCCcCCcchhhhCCchhh--hcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c
Confidence 01 1368999999999998754332211110 11222233333 589999999999999999999999999 6
Q ss_pred CCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEE
Q 016734 308 SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (384)
Q Consensus 308 ~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AW 342 (384)
.+.+.+.++|++.|+..+.+..+..|+ .|+++++
T Consensus 241 ~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~~~ 274 (275)
T PRK09328 241 DQGEAVRALLAAAGFADVETRKDLAGR-DRVVLGR 274 (275)
T ss_pred hHHHHHHHHHHhCCCceeEEecCCCCC-ceEEEEE
Confidence 788999999999999999999899887 8888864
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.93 E-value=5.6e-25 Score=214.21 Aligned_cols=190 Identities=20% Similarity=0.272 Sum_probs=149.6
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHH-HhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~d-ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
++|+|++|.|++++|||| |+++.++.+... .+.. ....+|||+|||+|++++.++...++++++|+|+|
T Consensus 85 ~~f~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPR-SPIAELIEDGFAPWLEP---------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred CeecCcEEEECCCCccCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 568899999999999999 999999988764 3321 12358999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (384)
Q Consensus 149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 228 (384)
+.|++.|++|++.++ +.++|.++.+|..+
T Consensus 155 ~~al~~A~~n~~~~~-~~~~i~~~~~D~~~-------------------------------------------------- 183 (284)
T TIGR03533 155 PDALAVAEINIERHG-LEDRVTLIQSDLFA-------------------------------------------------- 183 (284)
T ss_pred HHHHHHHHHHHHHcC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999998 77789999887421
Q ss_pred CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGR 306 (384)
Q Consensus 229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk 306 (384)
.+ ..++||+|+|||||++..+...+.+. + ..+..++..|| ++.++++++.++..+++.+|++.+++|
T Consensus 184 -----~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~--~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g- 252 (284)
T TIGR03533 184 -----AL--PGRKYDLIVSNPPYVDAEDMADLPAE--Y-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG- 252 (284)
T ss_pred -----cc--CCCCccEEEECCCCCCccchhhCCHh--h-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-
Confidence 11 13479999999999987653322221 1 13444555566 489999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCeEEEEEEeeCCCe
Q 016734 307 KSNLKFLISKLRKVGVTIVKTTEFVQGQT 335 (384)
Q Consensus 307 ~~~l~~l~~~L~~~g~~~v~~~e~~qG~t 335 (384)
.++ +.+.+++.+.|+.. ..+-++++
T Consensus 253 ~~~-~~v~~~~~~~~~~~---~~~~~~~~ 277 (284)
T TIGR03533 253 NSM-EALEEAYPDVPFTW---LEFENGGD 277 (284)
T ss_pred cCH-HHHHHHHHhCCCce---eeecCCCc
Confidence 445 79999999988653 34444443
No 12
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.93 E-value=2.5e-24 Score=211.91 Aligned_cols=195 Identities=20% Similarity=0.264 Sum_probs=148.8
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHH-HhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~d-ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
++|+|++|.|++++|||| |+++.++.++.. ++.. ....+|||+|||+|++++.++...++++|+|+|+|
T Consensus 97 ~~F~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis 166 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPR-SPIAELIEDGFAPWLED---------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS 166 (307)
T ss_pred ceEcCcEEEECCCCcCCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence 679999999999999999 999999988754 3321 11258999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (384)
Q Consensus 149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 228 (384)
+.|++.|++|++.++ +.++|+++++|..+
T Consensus 167 ~~al~~A~~n~~~~~-l~~~i~~~~~D~~~-------------------------------------------------- 195 (307)
T PRK11805 167 PDALAVAEINIERHG-LEDRVTLIESDLFA-------------------------------------------------- 195 (307)
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999997 77789999887421
Q ss_pred CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGR 306 (384)
Q Consensus 229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk 306 (384)
.+ ..++||+|||||||++..+...+.+.. ..+.++++.|| ++.+++++++++..+++++|++.+++|.
T Consensus 196 -----~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~---~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 196 -----AL--PGRRYDLIVSNPPYVDAEDMADLPAEY---RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred -----hC--CCCCccEEEECCCCCCccchhhcCHhh---ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11 134799999999999875433222211 12334455555 4899999999999999999999999994
Q ss_pred CCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEE
Q 016734 307 KSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL 340 (384)
Q Consensus 307 ~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~ 340 (384)
++ ..+.+++.+.++.. .++..+.-..|++
T Consensus 266 -~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 294 (307)
T PRK11805 266 -SR-VHLEEAYPDVPFTW---LEFENGGDGVFLL 294 (307)
T ss_pred -CH-HHHHHHHhhCCCEE---EEecCCCceEEEE
Confidence 43 45888888877543 3444444344443
No 13
>PLN02672 methionine S-methyltransferase
Probab=99.93 E-value=1.1e-24 Score=241.22 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=146.8
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
++|||++|.|.+++|||| |+|+.+++++.. .... .-+..+|||+|||||||++.|+.+.+..+|+|+|+|+
T Consensus 82 ~~F~~l~~~V~p~VLIPR-peTE~lve~L~~-~~~~-------~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~ 152 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPE-DWSFTFYEGLNR-HPDS-------IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP 152 (1082)
T ss_pred EEecCCceeeCCCcccCc-hhHHHHHHHHHh-cccc-------cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH
Confidence 579999999999999999 999999998432 1110 0123589999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHCCCC---------------CCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHI---------------SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l---------------~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (384)
+|++.|++|++.|+ + .++|+++++|..+
T Consensus 153 ~Al~~A~~Na~~n~-l~~~~~~~~~~~~~~l~~rV~f~~sDl~~------------------------------------ 195 (1082)
T PLN02672 153 RAVKVAWINLYLNA-LDDDGLPVYDGEGKTLLDRVEFYESDLLG------------------------------------ 195 (1082)
T ss_pred HHHHHHHHHHHHcC-cccccccccccccccccccEEEEECchhh------------------------------------
Confidence 99999999999875 3 3578888887532
Q ss_pred CCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccc-------cCCCcccccccCc-----hHHH
Q 016734 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTS-------CGGTPEEMVCSGG-----ERAF 282 (384)
Q Consensus 215 ~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~-------~~g~~~E~~~~GG-----el~F 282 (384)
.+.....+||+|||||||++..+...+.|... +-.-+..+.+.|| ++.|
T Consensus 196 -------------------~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~ 256 (1082)
T PLN02672 196 -------------------YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGL 256 (1082)
T ss_pred -------------------hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHH
Confidence 11101236999999999999876443322211 0000122344442 4999
Q ss_pred HHHHHHHHHHhhccCeEEEEEecCCCCHHHHH-HHHHHcCCeEEEE
Q 016734 283 ITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI-SKLRKVGVTIVKT 327 (384)
Q Consensus 283 v~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~-~~L~~~g~~~v~~ 327 (384)
+++|+.++..+++.+||+.+++| ..|.+.+. +++++.|+..+.+
T Consensus 257 yr~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 257 IARAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred HHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEE
Confidence 99999999999999999999999 89999999 6999999765444
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.92 E-value=5.4e-24 Score=203.84 Aligned_cols=183 Identities=14% Similarity=0.181 Sum_probs=143.8
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
++|+|++|.+++++|+|| |+|+.+++++.+.+... ....++||+|||+|++++.++...++.+++|+|+|+
T Consensus 50 ~~f~g~~~~v~~~vf~pr-~~Te~Lv~~~l~~~~~~--------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~ 120 (251)
T TIGR03704 50 AEFCGLRIAVDPGVFVPR-RRTEFLVDEAAALARPR--------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP 120 (251)
T ss_pred CeEcCeEEEECCCCcCCC-ccHHHHHHHHHHhhccc--------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH
Confidence 678999999999999999 99999999988765321 123589999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
.|++.|++|++.|+ ++++.+|..+
T Consensus 121 ~al~~A~~N~~~~~-----~~~~~~D~~~--------------------------------------------------- 144 (251)
T TIGR03704 121 AAVRCARRNLADAG-----GTVHEGDLYD--------------------------------------------------- 144 (251)
T ss_pred HHHHHHHHHHHHcC-----CEEEEeechh---------------------------------------------------
Confidence 99999999999886 3677776432
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCC
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRK 307 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~ 307 (384)
.+... ..++||+|+|||||++..+....+|... ..+..+.+.|| ++.++++|++.+..+++.+|++.++++ .
T Consensus 145 -~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~--~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~ 218 (251)
T TIGR03704 145 -ALPTA--LRGRVDILAANAPYVPTDAIALMPPEAR--DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-E 218 (251)
T ss_pred -hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHH--hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-c
Confidence 00000 1247999999999998755433333221 12223344555 589999999999999999999998888 7
Q ss_pred CCHHHHHHHHHHcCCe
Q 016734 308 SNLKFLISKLRKVGVT 323 (384)
Q Consensus 308 ~~l~~l~~~L~~~g~~ 323 (384)
++..++.+.|++.|+.
T Consensus 219 ~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 219 RQAPLAVEAFARAGLI 234 (251)
T ss_pred chHHHHHHHHHHCCCC
Confidence 8999999999999984
No 15
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.91 E-value=7.3e-23 Score=192.98 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=156.2
Q ss_pred hccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
.++|+..+.++.++++|+ |+++.++.++.+.+.. ...+|||+|||+|+++..++...++++++|+|+++
T Consensus 53 ~~~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~ 121 (251)
T TIGR03534 53 REFYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISP 121 (251)
T ss_pred ceEeceEEEECCCcccCC-CChHHHHHHHHHhccc----------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence 568999999999999999 9999999998877642 23589999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 229 (384)
.+++.|++|++.++ +. ++.++.+|..+
T Consensus 122 ~~~~~a~~~~~~~~-~~-~~~~~~~d~~~--------------------------------------------------- 148 (251)
T TIGR03534 122 EALAVARKNAARLG-LD-NVTFLQSDWFE--------------------------------------------------- 148 (251)
T ss_pred HHHHHHHHHHHHcC-CC-eEEEEECchhc---------------------------------------------------
Confidence 99999999999987 54 68888877431
Q ss_pred CcccccccCCCcEEEEEECCCcccchhhhc-------cCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEE
Q 016734 230 PVLVGVVRDGEQFDFCICNPPFFESMEEAG-------LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (384)
Q Consensus 230 ~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~-------~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~ 302 (384)
.+ ..++||+|+|||||+...+... .+|..++.+... ++.++..+++++..+++++|++.+
T Consensus 149 ----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 149 ----PL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED-------GLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred ----cC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 01 2468999999999997654322 234333332222 578889999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEE
Q 016734 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339 (384)
Q Consensus 303 ~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~ 339 (384)
++| ..+.+.+.+.|++.|+..+.+..+..|+ .|++
T Consensus 216 ~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~ 250 (251)
T TIGR03534 216 EIG-YDQGEAVRALFEAAGFADVETRKDLAGK-DRVV 250 (251)
T ss_pred EEC-ccHHHHHHHHHHhCCCCceEEEeCCCCC-cCee
Confidence 998 7788999999999999999999988776 6764
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.87 E-value=1.9e-21 Score=185.05 Aligned_cols=155 Identities=26% Similarity=0.373 Sum_probs=120.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||||||+|+++++|+++.+.++++|||+++++.+.|++|++.|+ ++++|+++++|+.+.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~---------------- 107 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEF---------------- 107 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHh----------------
Confidence 679999999999999999999888999999999999999999999997 999999999996531
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
.... ...+||+||||||||+.... +++.....-+.+|..+
T Consensus 108 ------------------------------------~~~~--~~~~fD~Ii~NPPyf~~~~~--~~~~~~~~~Ar~e~~~ 147 (248)
T COG4123 108 ------------------------------------LKAL--VFASFDLIICNPPYFKQGSR--LNENPLRAIARHEITL 147 (248)
T ss_pred ------------------------------------hhcc--cccccCEEEeCCCCCCCccc--cCcChhhhhhhhhhcC
Confidence 0111 23479999999999998765 2222222233443322
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT 335 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t 335 (384)
. ...+++-+..+++++|-+ +||.+..++.+++.+|++.++. .+.+.|++.+.
T Consensus 148 ~------le~~i~~a~~~lk~~G~l-~~V~r~erl~ei~~~l~~~~~~-~k~i~~V~p~~ 199 (248)
T COG4123 148 D------LEDLIRAAAKLLKPGGRL-AFVHRPERLAEIIELLKSYNLE-PKRIQFVYPKI 199 (248)
T ss_pred C------HHHHHHHHHHHccCCCEE-EEEecHHHHHHHHHHHHhcCCC-ceEEEEecCCC
Confidence 2 456667788888888877 6788899999999999999986 55666766654
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.82 E-value=5.8e-19 Score=159.22 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=117.3
Q ss_pred cEEEecCCCccCCC--cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 75 LNWWIPDGQLCPTV--PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 75 l~~~vp~~~LiPrv--P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
++|..++|++.|+- +.++.+++++... ...++||+|||+|+|++.++.+.+.++|+++|+++.|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH-------------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH-------------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc-------------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 57889999998663 3455555555533 24589999999999999999999998999999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcc
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL 232 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~ 232 (384)
+.|++|++.|+ +++ ++++.+|..+
T Consensus 69 ~~a~~n~~~n~-~~~-v~~~~~d~~~------------------------------------------------------ 92 (170)
T PF05175_consen 69 ELAKRNAERNG-LEN-VEVVQSDLFE------------------------------------------------------ 92 (170)
T ss_dssp HHHHHHHHHTT-CTT-EEEEESSTTT------------------------------------------------------
T ss_pred HHHHHHHHhcC-ccc-cccccccccc------------------------------------------------------
Confidence 99999999998 777 9999887532
Q ss_pred cccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHH
Q 016734 233 VGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKF 312 (384)
Q Consensus 233 ~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~ 312 (384)
.+ ..++||+|+|||||....+ . +..++.++++++..+++++|.+.....+....+.
T Consensus 93 -~~--~~~~fD~Iv~NPP~~~~~~--------------~-------~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~ 148 (170)
T PF05175_consen 93 -AL--PDGKFDLIVSNPPFHAGGD--------------D-------GLDLLRDFIEQARRYLKPGGRLFLVINSHLGYER 148 (170)
T ss_dssp -TC--CTTCEEEEEE---SBTTSH--------------C-------HHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHH
T ss_pred -cc--cccceeEEEEccchhcccc--------------c-------chhhHHHHHHHHHHhccCCCEEEEEeecCCChHH
Confidence 11 2478999999999654321 1 4678999999999999999998777766666666
Q ss_pred HHHHHHHcCCeEEEEEEe
Q 016734 313 LISKLRKVGVTIVKTTEF 330 (384)
Q Consensus 313 l~~~L~~~g~~~v~~~e~ 330 (384)
+++.+ +..++++.-
T Consensus 149 ~l~~~----f~~~~~~~~ 162 (170)
T PF05175_consen 149 LLKEL----FGDVEVVAK 162 (170)
T ss_dssp HHHHH----HS--EEEEE
T ss_pred HHHHh----cCCEEEEEE
Confidence 63322 234555543
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.74 E-value=2.5e-16 Score=147.73 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=125.9
Q ss_pred CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
-|+.+.++++++.|. ++++.++.++..+-. ....+|||+|||+|.++..++.. ...+++|+|+|+.++
T Consensus 5 ~~~~~~~~~g~~~p~-~ds~~l~~~l~~~~~----------~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l 72 (223)
T PRK14967 5 PPDALLRAPGVYRPQ-EDTQLLADALAAEGL----------GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAV 72 (223)
T ss_pred CCceeecCCCCcCCC-CcHHHHHHHHHhccc----------CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHH
Confidence 477899999999999 788776666554311 12358999999999998887754 334999999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcc
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL 232 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~ 232 (384)
+.|++|++.++ + ++.++.+|..+
T Consensus 73 ~~a~~n~~~~~-~--~~~~~~~d~~~------------------------------------------------------ 95 (223)
T PRK14967 73 RSARLNALLAG-V--DVDVRRGDWAR------------------------------------------------------ 95 (223)
T ss_pred HHHHHHHHHhC-C--eeEEEECchhh------------------------------------------------------
Confidence 99999999887 4 47777766321
Q ss_pred cccccCCCcEEEEEECCCcccchhhh--ccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCH
Q 016734 233 VGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNL 310 (384)
Q Consensus 233 ~~~~~~~~~fD~i~cNPPy~~s~~~~--~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l 310 (384)
.+ .+++||+|+|||||++..+.. ...|...+.+... +..++.++++++..+++.+|.+.+......+.
T Consensus 96 -~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~ 165 (223)
T PRK14967 96 -AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD-------GRAVLDRLCDAAPALLAPGGSLLLVQSELSGV 165 (223)
T ss_pred -hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc-------HHHHHHHHHHHHHHhcCCCcEEEEEEecccCH
Confidence 01 246799999999999765432 1122222222111 35678889999999999999887666656688
Q ss_pred HHHHHHHHHcCCe
Q 016734 311 KFLISKLRKVGVT 323 (384)
Q Consensus 311 ~~l~~~L~~~g~~ 323 (384)
..+.+.+++.|+.
T Consensus 166 ~~~~~~l~~~g~~ 178 (223)
T PRK14967 166 ERTLTRLSEAGLD 178 (223)
T ss_pred HHHHHHHHHCCCC
Confidence 9999999998875
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.70 E-value=1.5e-15 Score=137.43 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=113.1
Q ss_pred CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
+++|+ +++....+.+. .. ...+|||+|||+|.++..++...+ +++|+|+|+++++.|++|++.+
T Consensus 1 ~~~~~-~d~~~l~~~l~-~~------------~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~ 64 (179)
T TIGR00537 1 VYEPA-EDSLLLEANLR-EL------------KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN 64 (179)
T ss_pred CCCCC-ccHHHHHHHHH-hc------------CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc
Confidence 57889 78743333322 21 235799999999999988886543 8999999999999999999988
Q ss_pred CCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcE
Q 016734 163 PHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQF 242 (384)
Q Consensus 163 ~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~f 242 (384)
+ + .++++.+|..+ . ..++|
T Consensus 65 ~-~--~~~~~~~d~~~-------------------------------------------------------~---~~~~f 83 (179)
T TIGR00537 65 N-V--GLDVVMTDLFK-------------------------------------------------------G---VRGKF 83 (179)
T ss_pred C-C--ceEEEEccccc-------------------------------------------------------c---cCCcc
Confidence 6 4 47777776321 0 12479
Q ss_pred EEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc
Q 016734 243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV 320 (384)
Q Consensus 243 D~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~ 320 (384)
|+|+|||||++........+ .......|| +.....+++++..++++.+|.+.+......+..++.+.|++.
T Consensus 84 D~Vi~n~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~ 156 (179)
T TIGR00537 84 DVILFNPPYLPLEDDLRRGD-------WLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER 156 (179)
T ss_pred cEEEECCCCCCCcchhcccc-------hhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence 99999999997643321111 111223333 245578899999999999998877666566799999999999
Q ss_pred CCeE
Q 016734 321 GVTI 324 (384)
Q Consensus 321 g~~~ 324 (384)
|+..
T Consensus 157 gf~~ 160 (179)
T TIGR00537 157 GFRY 160 (179)
T ss_pred CCeE
Confidence 9863
No 20
>PRK14968 putative methyltransferase; Provisional
Probab=99.64 E-value=1.8e-14 Score=129.67 Aligned_cols=167 Identities=22% Similarity=0.283 Sum_probs=120.2
Q ss_pred cCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734 80 PDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 80 p~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni 159 (384)
.++++.|+ +++..++.++.. ....++||+|||+|.++..++.. +.+++|+|+++++++.|++|+
T Consensus 2 ~~~~~~p~-~~~~~l~~~~~~-------------~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 2 NDEVYEPA-EDSFLLAENAVD-------------KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCcccCcc-hhHHHHHHhhhc-------------cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHH
Confidence 46788888 666555554432 12458999999999999888876 689999999999999999999
Q ss_pred HHCCCCCCc-eEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccC
Q 016734 160 KSNPHISEL-IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD 238 (384)
Q Consensus 160 ~~n~~l~~~-I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~ 238 (384)
..++ +.++ +.++.+|..+ .+ .
T Consensus 66 ~~~~-~~~~~~~~~~~d~~~-------------------------------------------------------~~--~ 87 (188)
T PRK14968 66 KLNN-IRNNGVEVIRSDLFE-------------------------------------------------------PF--R 87 (188)
T ss_pred HHcC-CCCcceEEEeccccc-------------------------------------------------------cc--c
Confidence 9887 5544 7777776321 11 1
Q ss_pred CCcEEEEEECCCcccchhhhccCCccccCCCcccccccCc--hHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHH
Q 016734 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGG--ERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK 316 (384)
Q Consensus 239 ~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GG--el~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~ 316 (384)
...||+|++||||++.......++ .......+| ....+..+++++..+++.+|++...++.....+.+.+.
T Consensus 88 ~~~~d~vi~n~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~ 160 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEEEEEWDD-------WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEY 160 (188)
T ss_pred ccCceEEEECCCcCCCCchhhhhh-------hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHH
Confidence 237999999999987542211111 111222233 24567888999989999999988888766778999999
Q ss_pred HHHcCCeEEEE
Q 016734 317 LRKVGVTIVKT 327 (384)
Q Consensus 317 L~~~g~~~v~~ 327 (384)
+.+.|+....+
T Consensus 161 ~~~~g~~~~~~ 171 (188)
T PRK14968 161 LEKLGFEAEVV 171 (188)
T ss_pred HHHCCCeeeee
Confidence 99999865444
No 21
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.64 E-value=9e-15 Score=147.81 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=100.6
Q ss_pred CCcEEEecCCCccCCCcC--HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734 73 HGLNWWIPDGQLCPTVPN--RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (384)
Q Consensus 73 fgl~~~vp~~~LiPrvP~--r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~ 150 (384)
.++++.-.+||+...=-+ +..++. .+.. ....+|||+|||+|+|++.++++.|.++|+++|+|+.
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~----~lp~---------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~ 263 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQ----HLPE---------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM 263 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHH----hCCc---------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHH
Confidence 345566677888865211 322222 2211 1235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC--CceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCC
Q 016734 151 ALEWAEKNVKSNPHIS--ELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (384)
Q Consensus 151 al~~A~~Ni~~n~~l~--~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 228 (384)
|++.|++|++.|+ .+ .+++++.+|..+
T Consensus 264 Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~-------------------------------------------------- 292 (378)
T PRK15001 264 AVASSRLNVETNM-PEALDRCEFMINNALS-------------------------------------------------- 292 (378)
T ss_pred HHHHHHHHHHHcC-cccCceEEEEEccccc--------------------------------------------------
Confidence 9999999999986 43 367777665321
Q ss_pred CCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecC
Q 016734 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGR 306 (384)
Q Consensus 229 ~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk 306 (384)
.+ ..++||+|+|||||+..... . -....+|+.++.+.++++|++.+...+
T Consensus 293 -----~~--~~~~fDlIlsNPPfh~~~~~-----------~----------~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 293 -----GV--EPFRFNAVLCNPPFHQQHAL-----------T----------DNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred -----cC--CCCCEEEEEECcCcccCccC-----------C----------HHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 11 23579999999999853210 0 123568899999999999988666543
No 22
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.8e-15 Score=143.74 Aligned_cols=128 Identities=21% Similarity=0.203 Sum_probs=94.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||+|||.|.|++.|++..|..+++-+|+|..|++.|++|++.|+ ++.. .++.++.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~------------------- 217 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNL------------------- 217 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecc-------------------
Confidence 348999999999999999999999999999999999999999999997 6654 5665553
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+.++ .++||+|+|||||+...+.
T Consensus 218 ------------------------------------~~~v---~~kfd~IisNPPfh~G~~v------------------ 240 (300)
T COG2813 218 ------------------------------------YEPV---EGKFDLIISNPPFHAGKAV------------------ 240 (300)
T ss_pred ------------------------------------cccc---cccccEEEeCCCccCCcch------------------
Confidence 2222 3499999999999964321
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEE
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT 328 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~ 328 (384)
......+||.++...++.+|-+. +|.. .......+|++. |.+++++
T Consensus 241 ---~~~~~~~~i~~A~~~L~~gGeL~-iVan--~~l~y~~~L~~~-Fg~v~~l 286 (300)
T COG2813 241 ---VHSLAQEIIAAAARHLKPGGELW-IVAN--RHLPYEKKLKEL-FGNVEVL 286 (300)
T ss_pred ---hHHHHHHHHHHHHHhhccCCEEE-EEEc--CCCChHHHHHHh-cCCEEEE
Confidence 23456789999999999888663 4442 333344444443 3344444
No 23
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.63 E-value=3.6e-15 Score=124.60 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=85.9
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccccc
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (384)
.+|||+|||+|.+...++... ..+++|+|+|+.+++.|+.|+..++ +.++++++.+|..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~------------------ 61 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARD------------------ 61 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHH------------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhh------------------
Confidence 479999999999998888776 7899999999999999999999997 88899999988432
Q ss_pred ccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccccc
Q 016734 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~ 276 (384)
+.... ..++||+|+|||||......... .
T Consensus 62 ----------------------------------~~~~~--~~~~~D~Iv~npP~~~~~~~~~~---------~------ 90 (117)
T PF13659_consen 62 ----------------------------------LPEPL--PDGKFDLIVTNPPYGPRSGDKAA---------L------ 90 (117)
T ss_dssp ----------------------------------HHHTC--TTT-EEEEEE--STTSBTT-------------G------
T ss_pred ----------------------------------chhhc--cCceeEEEEECCCCccccccchh---------h------
Confidence 00001 35789999999999875322110 0
Q ss_pred CchHHHHHHHHHHHHHhhccCeEEEEEec
Q 016734 277 GGERAFITRIIEDSVALKQTFRWYTSMVG 305 (384)
Q Consensus 277 GGel~Fv~~ii~eS~~l~~~~~w~t~~vg 305 (384)
-.....+++++.++++++|.+.+.++
T Consensus 91 ---~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 91 ---RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp ---GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 01566778888899999999877653
No 24
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.5e-13 Score=124.58 Aligned_cols=165 Identities=18% Similarity=0.250 Sum_probs=122.0
Q ss_pred cCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 85 CPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 85 iPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
=|. -+|-.+++.++.-...-. ......++|||||||++...|++.. +++...++||+|+|+++..+.++.|+
T Consensus 20 EPa-EDTFlLlDaLekd~~eL~------~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~ 92 (209)
T KOG3191|consen 20 EPA-EDTFLLLDALEKDAAELK------GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR 92 (209)
T ss_pred Ccc-chhhHHHHHHHHHHHHHh------hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC
Confidence 344 556666665553222110 1235689999999999999998764 67889999999999999999999997
Q ss_pred CCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEE
Q 016734 164 HISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD 243 (384)
Q Consensus 164 ~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD 243 (384)
. ++.++..|.. .++ ..++.|
T Consensus 93 -~--~~~~V~tdl~-------------------------------------------------------~~l--~~~~VD 112 (209)
T KOG3191|consen 93 -V--HIDVVRTDLL-------------------------------------------------------SGL--RNESVD 112 (209)
T ss_pred -C--ccceeehhHH-------------------------------------------------------hhh--ccCCcc
Confidence 2 4777777642 233 238899
Q ss_pred EEEECCCcccchhhhccCCccccCCCcccccccCch--HHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC
Q 016734 244 FCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGE--RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 244 ~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGe--l~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g 321 (384)
+++-||||.++.++... ...-+....||. .....+++.+...++.+.|||+...-+....+++++.|++.|
T Consensus 113 vLvfNPPYVpt~~~~i~-------~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g 185 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIG-------DEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKG 185 (209)
T ss_pred EEEECCCcCcCCcccch-------hHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcc
Confidence 99999999998654321 111233445664 677899999999999999999877777788999999999999
Q ss_pred Ce
Q 016734 322 VT 323 (384)
Q Consensus 322 ~~ 323 (384)
+.
T Consensus 186 ~~ 187 (209)
T KOG3191|consen 186 YG 187 (209)
T ss_pred cc
Confidence 85
No 25
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=4.4e-13 Score=134.08 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=102.0
Q ss_pred CcEEEecCCCccCCCc--CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734 74 GLNWWIPDGQLCPTVP--NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (384)
Q Consensus 74 gl~~~vp~~~LiPrvP--~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a 151 (384)
++.+...+|++-+.-. .+..++.. +.. ....+|||+|||+|.++..++.+.++.+++++|+|+.|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~----l~~---------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~A 232 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLST----LTP---------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAA 232 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHh----ccc---------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 4567777788776522 23333332 211 12347999999999999999988888999999999999
Q ss_pred HHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCc
Q 016734 152 LEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPV 231 (384)
Q Consensus 152 l~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i 231 (384)
++.|++|++.|+ +. .+++.+|..
T Consensus 233 l~~A~~nl~~n~-l~--~~~~~~D~~------------------------------------------------------ 255 (342)
T PRK09489 233 LESSRATLAANG-LE--GEVFASNVF------------------------------------------------------ 255 (342)
T ss_pred HHHHHHHHHHcC-CC--CEEEEcccc------------------------------------------------------
Confidence 999999999997 54 355555421
Q ss_pred ccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHH
Q 016734 232 LVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK 311 (384)
Q Consensus 232 ~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~ 311 (384)
.. ..++||+|+|||||+..... ...-..+++.++.++++++|.+.....+.-..+
T Consensus 256 -~~---~~~~fDlIvsNPPFH~g~~~---------------------~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 256 -SD---IKGRFDMIISNPPFHDGIQT---------------------SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred -cc---cCCCccEEEECCCccCCccc---------------------cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 11 13679999999999853210 134568889999999999998854443333344
Q ss_pred HHHH
Q 016734 312 FLIS 315 (384)
Q Consensus 312 ~l~~ 315 (384)
.+++
T Consensus 311 ~~l~ 314 (342)
T PRK09489 311 DLLD 314 (342)
T ss_pred HHHH
Confidence 4443
No 26
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.48 E-value=3.5e-13 Score=125.22 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=71.8
Q ss_pred ccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (384)
Q Consensus 71 ~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~ 150 (384)
.++|+.+.+|++--. | |.+....+.+.+.+... ....++||+|||+|++++.++.+. ..+|+++|++++
T Consensus 19 ~~~g~~l~~~~~~~~-R-p~~d~v~e~l~~~l~~~--------~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 19 QWRGRKLPVPDSPGL-R-PTTDRVRETLFNWLAPV--------IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred ccCCCEeCCCCCCCc-C-cCCHHHHHHHHHHHhhh--------cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 378999999886422 6 77777777776666421 123589999999999998654443 369999999999
Q ss_pred HHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 151 ALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 151 al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+++.|++|++.++ ++ ++.++.+|.
T Consensus 88 a~~~a~~Nl~~~~-~~-~v~~~~~D~ 111 (199)
T PRK10909 88 VAQQLIKNLATLK-AG-NARVVNTNA 111 (199)
T ss_pred HHHHHHHHHHHhC-CC-cEEEEEchH
Confidence 9999999999997 65 689988874
No 27
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.5e-12 Score=117.57 Aligned_cols=134 Identities=25% Similarity=0.313 Sum_probs=99.4
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
+....|+.|++.+... -+...|+|+|||||.+++..+ ..+ .+|+|+|+|++|++.|++|+.++ .+
T Consensus 28 ~~~Aa~il~~a~~~g~---------l~g~~V~DlG~GTG~La~ga~--~lGa~~V~~vdiD~~a~ei~r~N~~~l---~g 93 (198)
T COG2263 28 APLAAYILWVAYLRGD---------LEGKTVLDLGAGTGILAIGAA--LLGASRVLAVDIDPEALEIARANAEEL---LG 93 (198)
T ss_pred hHHHHHHHHHHHHcCC---------cCCCEEEEcCCCcCHHHHHHH--hcCCcEEEEEecCHHHHHHHHHHHHhh---CC
Confidence 4677889998885432 245579999999999875544 444 58999999999999999999984 35
Q ss_pred ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734 168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247 (384)
Q Consensus 168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c 247 (384)
+|.++.+|+.+ -...||.++.
T Consensus 94 ~v~f~~~dv~~-----------------------------------------------------------~~~~~dtvim 114 (198)
T COG2263 94 DVEFVVADVSD-----------------------------------------------------------FRGKFDTVIM 114 (198)
T ss_pred ceEEEEcchhh-----------------------------------------------------------cCCccceEEE
Confidence 79999988542 1357899999
Q ss_pred CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734 248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (384)
Q Consensus 248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~ 323 (384)
||||-..... -+..|+..-++-| .+.+ -+++..+...+.+....+|.+
T Consensus 115 NPPFG~~~rh--------------------aDr~Fl~~Ale~s-------~vVY-siH~a~~~~f~~~~~~~~G~~ 162 (198)
T COG2263 115 NPPFGSQRRH--------------------ADRPFLLKALEIS-------DVVY-SIHKAGSRDFVEKFAADLGGT 162 (198)
T ss_pred CCCCcccccc--------------------CCHHHHHHHHHhh-------heEE-EeeccccHHHHHHHHHhcCCe
Confidence 9999764221 1467887665555 2333 345577899999999999964
No 28
>PHA03412 putative methyltransferase; Provisional
Probab=99.43 E-value=7.9e-13 Score=125.52 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc---cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV 192 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~---~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~ 192 (384)
..+|||+|||+|++++.++.+. +..+|+|+|||+.|+++|++|+. ++.++++|...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~-------------- 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALT-------------- 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhc--------------
Confidence 4689999999999999888764 35699999999999999998852 26777776431
Q ss_pred ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734 193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE 272 (384)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E 272 (384)
. . ..++||+|||||||++..... .++...
T Consensus 109 ---------------------------------------~-~---~~~~FDlIIsNPPY~~~~~~d-------~~ar~~- 137 (241)
T PHA03412 109 ---------------------------------------T-E---FDTLFDMAISNPPFGKIKTSD-------FKGKYT- 137 (241)
T ss_pred ---------------------------------------c-c---ccCCccEEEECCCCCCccccc-------cCCccc-
Confidence 0 0 135899999999999843100 011111
Q ss_pred ccccCchHHHHHHHHHHHHHhhccCeE
Q 016734 273 MVCSGGERAFITRIIEDSVALKQTFRW 299 (384)
Q Consensus 273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w 299 (384)
+..+..++++.+.+++..+++
T Consensus 138 ------g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 138 ------GAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEE
Confidence 366788888888887777775
No 29
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.40 E-value=1.5e-11 Score=122.21 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=103.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
...+||+|||+|.+.+.++ ..+.+++|+|+|+.+++.|+.|++.++ +.+ +.++.+|..+
T Consensus 183 g~~vLDp~cGtG~~lieaa--~~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~----------------- 241 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG--LMGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATK----------------- 241 (329)
T ss_pred cCEEEECCCCCCHHHHHHH--HhCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhc-----------------
Confidence 4589999999999876554 357899999999999999999999987 665 7888877432
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+ .. ..+.||+|+|||||-...... +.
T Consensus 242 ------------------------------------l-~~--~~~~~D~Iv~dPPyg~~~~~~---------~~------ 267 (329)
T TIGR01177 242 ------------------------------------L-PL--SSESVDAIATDPPYGRSTTAA---------GD------ 267 (329)
T ss_pred ------------------------------------C-Cc--ccCCCCEEEECCCCcCccccc---------CC------
Confidence 0 00 246799999999997532110 00
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe-eCCCeeEEE
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG 339 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~-~qG~t~Rw~ 339 (384)
....++.++++++.+.++++||+...+.... ++.+.++++|+ .+..... +.|.=+|.+
T Consensus 268 --~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~~~~~~h~sl~r~i 326 (329)
T TIGR01177 268 --GLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VVKRFEVRVHRSLTRHI 326 (329)
T ss_pred --chHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-chheeeeeeecceEEEE
Confidence 0135678899999999999999987776443 44566888998 6666553 444445543
No 30
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.4e-12 Score=121.79 Aligned_cols=142 Identities=20% Similarity=0.258 Sum_probs=101.8
Q ss_pred CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
+|.|...+.|+.+++. .+.++||+|||||.++++.+ ++--.+++|+|+||.|++.|++|++.|+ +..
T Consensus 146 HpTT~lcL~~Le~~~~-----------~g~~vlDvGcGSGILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~ 212 (300)
T COG2264 146 HPTTSLCLEALEKLLK-----------KGKTVLDVGCGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNG-VEL 212 (300)
T ss_pred ChhHHHHHHHHHHhhc-----------CCCEEEEecCChhHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHHcC-Cch
Confidence 6889999999998875 35689999999999876654 3333479999999999999999999998 553
Q ss_pred ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734 168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247 (384)
Q Consensus 168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c 247 (384)
.+..-..+ .... ...++||+|||
T Consensus 213 ~~~~~~~~-------------------------------------------------------~~~~--~~~~~~DvIVA 235 (300)
T COG2264 213 LVQAKGFL-------------------------------------------------------LLEV--PENGPFDVIVA 235 (300)
T ss_pred hhhccccc-------------------------------------------------------chhh--cccCcccEEEe
Confidence 12111000 0001 13468999999
Q ss_pred CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec-CCCCHHHHHHHHHHcCCeEEE
Q 016734 248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-RKSNLKFLISKLRKVGVTIVK 326 (384)
Q Consensus 248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-k~~~l~~l~~~L~~~g~~~v~ 326 (384)
|= . -..+.+|..+...+.+++|++. +=| -.++.+.+.+.+.+.|+..+.
T Consensus 236 NI--L---------------------------A~vl~~La~~~~~~lkpgg~lI-lSGIl~~q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 236 NI--L---------------------------AEVLVELAPDIKRLLKPGGRLI-LSGILEDQAESVAEAYEQAGFEVVE 285 (300)
T ss_pred hh--h---------------------------HHHHHHHHHHHHHHcCCCceEE-EEeehHhHHHHHHHHHHhCCCeEeE
Confidence 93 0 1235677788888888888863 223 245789999999999998666
Q ss_pred EEE
Q 016734 327 TTE 329 (384)
Q Consensus 327 ~~e 329 (384)
+.+
T Consensus 286 ~~~ 288 (300)
T COG2264 286 VLE 288 (300)
T ss_pred EEe
Confidence 554
No 31
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.37 E-value=6.4e-12 Score=136.52 Aligned_cols=145 Identities=21% Similarity=0.153 Sum_probs=104.4
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|++++.++.. ...+|+++|+|+.|++.|++|++.|+ +. ++++++++|..+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~---------------- 600 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLA---------------- 600 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHH----------------
Confidence 458999999999999888764 23379999999999999999999998 76 689999988431
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
++.. ..++||+|||||||+....... ..+
T Consensus 601 ------------------------------------~l~~---~~~~fDlIilDPP~f~~~~~~~----~~~-------- 629 (702)
T PRK11783 601 ------------------------------------WLKE---AREQFDLIFIDPPTFSNSKRME----DSF-------- 629 (702)
T ss_pred ------------------------------------HHHH---cCCCcCEEEECCCCCCCCCccc----hhh--------
Confidence 1111 1457999999999997532110 000
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCC
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG 333 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG 333 (384)
.....+..++..+..+++++|++.+... ..++....+.+.+.|+..-.+.+..|+
T Consensus 630 ---~~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 630 ---DVQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred ---hHHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHhCCCeEEEEecCCCC
Confidence 0234577788888888888988755444 556666688888888764444444444
No 32
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.36 E-value=5.5e-12 Score=128.54 Aligned_cols=134 Identities=17% Similarity=0.083 Sum_probs=92.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|.+++.++. ....+|+++|+|+.+++.|++|++.|+ +. ++++++.+|..+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~---------------- 282 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK---------------- 282 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHH----------------
Confidence 46899999999998766543 233499999999999999999999998 75 579999988532
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
++..+....++||+|+||||||...... +
T Consensus 283 ------------------------------------~l~~~~~~~~~fDlVilDPP~f~~~k~~-l-------------- 311 (396)
T PRK15128 283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKSQ-L-------------- 311 (396)
T ss_pred ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChHH-H--------------
Confidence 1111111246899999999999753211 0
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEE-EEEecCCCCHHHHHHHHHHc
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKV 320 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~-t~~vgk~~~l~~l~~~L~~~ 320 (384)
. +.+.-+..++..+..+++++|++ ++.....-+.+.+.+.+.+.
T Consensus 312 -~-~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 312 -M-GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred -H-HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 0 01223667778888888888865 44554445566666665543
No 33
>PHA03411 putative methyltransferase; Provisional
Probab=99.36 E-value=5.2e-12 Score=122.37 Aligned_cols=133 Identities=16% Similarity=0.094 Sum_probs=91.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||+|||+|.++..++.+.++.+++|+|+|+.+++.|++|.. ++.++.+|..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e----------------- 120 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFE----------------- 120 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhh-----------------
Confidence 458999999999998888777667899999999999999998731 47788877431
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+. ..++||+|+|||||+....... ......
T Consensus 121 -----------------------------------~~-----~~~kFDlIIsNPPF~~l~~~d~----------~~~~~~ 150 (279)
T PHA03411 121 -----------------------------------FE-----SNEKFDVVISNPPFGKINTTDT----------KDVFEY 150 (279)
T ss_pred -----------------------------------hc-----ccCCCcEEEEcCCccccCchhh----------hhhhhh
Confidence 00 1357999999999997432221 111334
Q ss_pred cCch--HHH--HHHHHHHHHHhhccCeEEEEEec-CC-----CCHHHHHHHHHHcCC
Q 016734 276 SGGE--RAF--ITRIIEDSVALKQTFRWYTSMVG-RK-----SNLKFLISKLRKVGV 322 (384)
Q Consensus 276 ~GGe--l~F--v~~ii~eS~~l~~~~~w~t~~vg-k~-----~~l~~l~~~L~~~g~ 322 (384)
.||+ ..+ +.+++.....++...|++.+..+ +. -.-.+..++|++.|+
T Consensus 151 ~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 151 TGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred ccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 4454 222 46777777777777766543333 11 124777889999886
No 34
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.36 E-value=2.3e-11 Score=111.34 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=93.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||+|||+|.++..++...++.+|+|+|+|+.+++.|++|++.++ +. +|+++++|..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~----------------- 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAED----------------- 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhh-----------------
Confidence 468999999999999988877788899999999999999999999987 65 49999887421
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+ ...++||+|+||. +. .
T Consensus 104 -----------------------------------~-----~~~~~fD~I~s~~-~~-~--------------------- 120 (181)
T TIGR00138 104 -----------------------------------F-----QHEEQFDVITSRA-LA-S--------------------- 120 (181)
T ss_pred -----------------------------------c-----cccCCccEEEehh-hh-C---------------------
Confidence 0 0246799999985 11 0
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH---cCCeEEEEEEee
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEFV 331 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~---~g~~~v~~~e~~ 331 (384)
+..+++....+++.+|.+....| .....++....++ .|+..+.+-++.
T Consensus 121 -------~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 121 -------LNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -------HHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeeccccC
Confidence 22333444566778888877777 6666666666655 787776665543
No 35
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=1.4e-11 Score=120.91 Aligned_cols=138 Identities=18% Similarity=0.255 Sum_probs=98.4
Q ss_pred CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
+|.|...++++.++.. ...+|||+|||||.++++.++ +-..+|+|+|+||.|++.|++|++.|+ +++
T Consensus 145 H~TT~lcl~~l~~~~~-----------~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~ 211 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVK-----------PGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNG-VED 211 (295)
T ss_dssp CHHHHHHHHHHHHHSS-----------TTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT--TT
T ss_pred CHHHHHHHHHHHHhcc-----------CCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcC-CCe
Confidence 7889999999988753 235999999999998765543 333489999999999999999999998 888
Q ss_pred ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734 168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247 (384)
Q Consensus 168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c 247 (384)
++.+.... .. ..++||+|++
T Consensus 212 ~~~v~~~~----------------------------------------------------------~~--~~~~~dlvvA 231 (295)
T PF06325_consen 212 RIEVSLSE----------------------------------------------------------DL--VEGKFDLVVA 231 (295)
T ss_dssp CEEESCTS----------------------------------------------------------CT--CCS-EEEEEE
T ss_pred eEEEEEec----------------------------------------------------------cc--ccccCCEEEE
Confidence 77653100 00 1378999999
Q ss_pred CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHHHcCCeEEE
Q 016734 248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVK 326 (384)
Q Consensus 248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~~~g~~~v~ 326 (384)
|= -...+..|+.+...+++++|++. +=+= ..+...+.+.+++ |+..++
T Consensus 232 NI-----------------------------~~~vL~~l~~~~~~~l~~~G~lIlSGIl-~~~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 232 NI-----------------------------LADVLLELAPDIASLLKPGGYLILSGIL-EEQEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp ES------------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-GGGHHHHHHHHHT-TEEEEE
T ss_pred CC-----------------------------CHHHHHHHHHHHHHhhCCCCEEEEcccc-HHHHHHHHHHHHC-CCEEEE
Confidence 93 01235667777777788888763 2222 5688999999977 987655
Q ss_pred EEE
Q 016734 327 TTE 329 (384)
Q Consensus 327 ~~e 329 (384)
..+
T Consensus 281 ~~~ 283 (295)
T PF06325_consen 281 ERE 283 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=4.6e-11 Score=108.88 Aligned_cols=128 Identities=16% Similarity=0.061 Sum_probs=97.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||||||+|.++..++...++.+++|+|+++.+++.|++|++.++ +. +++++.++...
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~~-~i~~~~~d~~~----------------- 92 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-CG-NIDIIPGEAPI----------------- 92 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-CeEEEecCchh-----------------
Confidence 458999999999999999988888999999999999999999999887 64 58888765210
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
. ..++||+|+++-..
T Consensus 93 --------------------------------------~---~~~~~D~v~~~~~~------------------------ 107 (187)
T PRK08287 93 --------------------------------------E---LPGKADAIFIGGSG------------------------ 107 (187)
T ss_pred --------------------------------------h---cCcCCCEEEECCCc------------------------
Confidence 0 12469999986210
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeC
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ 332 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~q 332 (384)
..+..+++.+...++.+|++....-...+..++.+.+++.|+..+++.+...
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 159 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQV 159 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEE
Confidence 0134456667777888888765443477889999999999998777766553
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=3.2e-11 Score=111.11 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=98.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||||||+|.++..++...++.+|+|+|+++.+++.|++|++.++ +++ ++++++|..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~----------------- 106 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEE----------------- 106 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhh-----------------
Confidence 568999999999999999988889999999999999999999999998 765 9998887421
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+. ..++||+|+||- + +
T Consensus 107 ---------------------------------------~~-~~~~fDlV~~~~--~---------------~------- 122 (187)
T PRK00107 107 ---------------------------------------FG-QEEKFDVVTSRA--V---------------A------- 122 (187)
T ss_pred ---------------------------------------CC-CCCCccEEEEcc--c---------------c-------
Confidence 00 135799999972 0 0
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF 330 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~ 330 (384)
-+..+++++.++++.+|.+.++.+ ......+.++.+..|..--++++.
T Consensus 123 ------~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 123 ------SLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred ------CHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeeeEEE
Confidence 034566777788899999988887 577888888888888764444443
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=2.7e-11 Score=100.12 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=55.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.+...+++..++++++|+|+|+++++.|++++...+ ..++|+++++|.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence 358999999999999999988899999999999999999999997776 788999999875
No 39
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.33 E-value=5.4e-11 Score=113.74 Aligned_cols=135 Identities=14% Similarity=0.091 Sum_probs=94.7
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~ 168 (384)
|.|...++++...+. ...+|||+|||+|.+++.++.. ...+++|+|+|+.+++.|++|++.|+ +.++
T Consensus 104 ~tt~~~l~~l~~~~~-----------~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~-~~~~ 170 (250)
T PRK00517 104 PTTRLCLEALEKLVL-----------PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG-VELN 170 (250)
T ss_pred HHHHHHHHHHHhhcC-----------CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC-CCce
Confidence 455555666554431 3468999999999887765543 33369999999999999999999987 5443
Q ss_pred eEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEEC
Q 016734 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (384)
Q Consensus 169 I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cN 248 (384)
+.+..+ +.+||+|+||
T Consensus 171 ~~~~~~----------------------------------------------------------------~~~fD~Vvan 186 (250)
T PRK00517 171 VYLPQG----------------------------------------------------------------DLKADVIVAN 186 (250)
T ss_pred EEEccC----------------------------------------------------------------CCCcCEEEEc
Confidence 332111 1269999999
Q ss_pred CCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEE
Q 016734 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT 328 (384)
Q Consensus 249 PPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~ 328 (384)
.. ...+..++.+...+++++|++...--...+.+.+.+.+++.|+..+.+.
T Consensus 187 i~-----------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 187 IL-----------------------------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred Cc-----------------------------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence 41 0124567778888888888875432225678899999999999866655
Q ss_pred E
Q 016734 329 E 329 (384)
Q Consensus 329 e 329 (384)
+
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
No 40
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.32 E-value=3.6e-11 Score=124.09 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=75.3
Q ss_pred ccCCcEEEecCCCccCCC-cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 71 HDHGLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 71 ~~fgl~~~vp~~~LiPrv-P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
+++|++|.+.++.+.-.- ..++.++.++.+.+.. ....+|||+|||+|++++.|+... .+|+|+|+|+
T Consensus 261 ~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~---------~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~ 329 (443)
T PRK13168 261 PEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP---------QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVE 329 (443)
T ss_pred EcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC---------CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCH
Confidence 456889999999886432 3367788888877642 123589999999999999988664 6999999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.|++.|++|++.|+ +. +++++.+|..
T Consensus 330 ~al~~A~~n~~~~~-~~-~v~~~~~d~~ 355 (443)
T PRK13168 330 AMVERARENARRNG-LD-NVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHHcC-CC-ceEEEEeChH
Confidence 99999999999997 64 5999998853
No 41
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.27 E-value=2.7e-10 Score=111.35 Aligned_cols=139 Identities=20% Similarity=0.245 Sum_probs=97.2
Q ss_pred CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
.|.|...+.++..+.. ...+|||+|||+|.++..++. ....+|+|+|+|+.|++.|++|+..|+ +.+
T Consensus 143 h~tt~l~l~~l~~~~~-----------~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~-~~~ 209 (288)
T TIGR00406 143 HPTTSLCLEWLEDLDL-----------KDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQ-VSD 209 (288)
T ss_pred CHHHHHHHHHHHhhcC-----------CCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC-CCc
Confidence 4555555555554331 236899999999998876664 444599999999999999999999997 777
Q ss_pred ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734 168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247 (384)
Q Consensus 168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c 247 (384)
++.++..+... . ..++||+|+|
T Consensus 210 ~~~~~~~~~~~-------------------------------------------------------~---~~~~fDlVva 231 (288)
T TIGR00406 210 RLQVKLIYLEQ-------------------------------------------------------P---IEGKADVIVA 231 (288)
T ss_pred ceEEEeccccc-------------------------------------------------------c---cCCCceEEEE
Confidence 77766543110 0 1357999999
Q ss_pred CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEE-EEecCCCCHHHHHHHHHHcCCeEEE
Q 016734 248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVK 326 (384)
Q Consensus 248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t-~~vgk~~~l~~l~~~L~~~g~~~v~ 326 (384)
|... ..+..++.+..++++++|++. +.+. .++..++.+.+++. +..+.
T Consensus 232 n~~~-----------------------------~~l~~ll~~~~~~LkpgG~li~sgi~-~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 232 NILA-----------------------------EVIKELYPQFSRLVKPGGWLILSGIL-ETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ecCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEeCc-HhHHHHHHHHHHcc-Cceee
Confidence 9620 123456667777778888764 3454 56788999999876 76555
Q ss_pred EE
Q 016734 327 TT 328 (384)
Q Consensus 327 ~~ 328 (384)
+.
T Consensus 281 ~~ 282 (288)
T TIGR00406 281 IR 282 (288)
T ss_pred Ee
Confidence 44
No 42
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=9.5e-11 Score=108.04 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=101.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
...+|||+|||+|.+++.++... +..+|+|+|+++.+++.|++|++.++ +.+++.++.+|..+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~--------------- 103 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPE--------------- 103 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhh---------------
Confidence 34689999999999998887654 45799999999999999999999997 66778888776321
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
.+.. ..+.||.|+++...
T Consensus 104 -------------------------------------~l~~---~~~~~D~V~~~~~~---------------------- 121 (198)
T PRK00377 104 -------------------------------------ILFT---INEKFDRIFIGGGS---------------------- 121 (198)
T ss_pred -------------------------------------hHhh---cCCCCCEEEECCCc----------------------
Confidence 0101 13578999886310
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEE
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRW 338 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw 338 (384)
.-+..+++++...++++|.+....-...++..+.+.|++.|+ .++++++...+..++
T Consensus 122 -------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~ 178 (198)
T PRK00377 122 -------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAKGMKT 178 (198)
T ss_pred -------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhhcccc
Confidence 013456677777778888876655557788999999999999 678777765544333
No 43
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.26 E-value=1.1e-10 Score=106.69 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=93.2
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCE---------EEEEeCcHHHHHHHHHHH
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWS---------FVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~---------v~gvDid~~al~~A~~Ni 159 (384)
|-++.+-..+..+..- .....+||..||||.|.+..+....+.. ++|+|+|+++++.|++|+
T Consensus 11 ~L~~~lA~~ll~la~~---------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGW---------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp SS-HHHHHHHHHHTT-----------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC---------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 5555555445444322 2345899999999999877766555555 999999999999999999
Q ss_pred HHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCC
Q 016734 160 KSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239 (384)
Q Consensus 160 ~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~ 239 (384)
+..+ +.+.|.+.+.|..+ +. ...
T Consensus 82 ~~ag-~~~~i~~~~~D~~~-----------------------------------------------------l~---~~~ 104 (179)
T PF01170_consen 82 KAAG-VEDYIDFIQWDARE-----------------------------------------------------LP---LPD 104 (179)
T ss_dssp HHTT--CGGEEEEE--GGG-----------------------------------------------------GG---GTT
T ss_pred Hhcc-cCCceEEEecchhh-----------------------------------------------------cc---ccc
Confidence 9998 88889998877431 11 124
Q ss_pred CcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHH
Q 016734 240 EQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK 319 (384)
Q Consensus 240 ~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~ 319 (384)
+.+|+|||||||-....... + ...|+.+++++..+.... |...++.....+. +.+..
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~------------~------~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~---~~~~~ 161 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKK------------D------LEKLYRQFLRELKRVLKP--RAVFLTTSNRELE---KALGL 161 (179)
T ss_dssp SBSCEEEEE--STTSHCHHH------------H------HHHHHHHHHHHHHCHSTT--CEEEEEESCCCHH---HHHTS
T ss_pred CCCCEEEECcchhhhccCHH------------H------HHHHHHHHHHHHHHHCCC--CEEEEEECCHHHH---HHhcc
Confidence 68999999999976432110 0 256889999998886655 5555555455554 44444
Q ss_pred cCCe
Q 016734 320 VGVT 323 (384)
Q Consensus 320 ~g~~ 323 (384)
.++.
T Consensus 162 ~~~~ 165 (179)
T PF01170_consen 162 KGWR 165 (179)
T ss_dssp TTSE
T ss_pred hhhc
Confidence 4544
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=2.3e-10 Score=118.66 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=67.4
Q ss_pred hhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 69 L~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
.+.|||.+|.++++++ +|+.++.++. . ....+|||||||+|+++..|+... +++++|+|+|
T Consensus 238 ~~~f~g~~~~v~~~v~-----~te~l~~~~~----~---------~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS 298 (475)
T PLN02336 238 YERVFGEGFVSTGGLE-----TTKEFVDKLD----L---------KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLS 298 (475)
T ss_pred HHHHhCCCCCCCchHH-----HHHHHHHhcC----C---------CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECC
Confidence 3668999999999988 4555554432 1 134589999999999998888755 7899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 149 DVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.+++.|++|+.. +..++.+..+|.
T Consensus 299 ~~~l~~A~~~~~~---~~~~v~~~~~d~ 323 (475)
T PLN02336 299 VNMISFALERAIG---RKCSVEFEVADC 323 (475)
T ss_pred HHHHHHHHHHhhc---CCCceEEEEcCc
Confidence 9999999998763 345789888874
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.23 E-value=8.2e-11 Score=109.14 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=95.4
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||||||+|.+...++...++.+|+|+|+++.+++.|+++++.++ + .++.++.+|..+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~----------------- 101 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVE----------------- 101 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHH-----------------
Confidence 468999999999999999888888899999999999999999999887 6 468998887411
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCc--ccchhhhccCCccccCCCcccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy--~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
.+... -.++.||+|++|.|. ..... ...
T Consensus 102 -----------------------------------~l~~~-~~~~~~D~V~~~~~~p~~~~~~------------~~~-- 131 (202)
T PRK00121 102 -----------------------------------VLLDM-FPDGSLDRIYLNFPDPWPKKRH------------HKR-- 131 (202)
T ss_pred -----------------------------------HHHHH-cCccccceEEEECCCCCCCccc------------ccc--
Confidence 00000 024679999998643 22100 000
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~ 323 (384)
......++++..++++++|.+....-....+..+.+.+++.|+.
T Consensus 132 ------~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 132 ------RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF 175 (202)
T ss_pred ------ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc
Confidence 00134556667777888888866655566788899999999863
No 46
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.22 E-value=8.9e-11 Score=116.03 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=70.5
Q ss_pred CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
|++|.+.++.+...-+. .+.++..+.+++... .+.+|||+|||+|.+++.++. .+.+|+|+|+++.|+
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~---------~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av 208 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVREL---------PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAI 208 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHH
Confidence 56788888888776332 355566666665421 236899999999999988886 457999999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCC
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.|++|++.|+ + ++++++.+|.
T Consensus 209 ~~A~~n~~~~~-l-~~v~~~~~D~ 230 (315)
T PRK03522 209 ACAKQSAAELG-L-TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHcC-C-CceEEEEcCH
Confidence 99999999998 6 4699998874
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.21 E-value=2.8e-10 Score=100.11 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=53.1
Q ss_pred CCCeEEEECCcccHHHHHHHh-hccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~-~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
+..+|||+|||+|.+...|+. ..++.+++|+|+|+++++.|+++++.++ +. +++++++|..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehh
Confidence 457999999999999999984 4678999999999999999999999997 66 7999998854
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.21 E-value=1.1e-10 Score=107.59 Aligned_cols=134 Identities=10% Similarity=0.065 Sum_probs=95.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..++||||||+|.+...++.+.|+..|+|+|+++.+++.|++++..++ +. +|.++.+|..+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~----------------- 77 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANE----------------- 77 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHH-----------------
Confidence 458999999999999999999999999999999999999999999887 65 79999887431
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCC--cccchhhhccCCccccCCCcccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPP--y~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
+..... .++.||.+++|+| +.+.. ... .++
T Consensus 78 -----------------------------------~~~~~~-~~~~~d~v~~~~pdpw~k~~----h~~--------~r~ 109 (194)
T TIGR00091 78 -----------------------------------LLDKFF-PDGSLSKVFLNFPDPWPKKR----HNK--------RRI 109 (194)
T ss_pred -----------------------------------HHHhhC-CCCceeEEEEECCCcCCCCC----ccc--------ccc
Confidence 000011 2357999999975 33210 000 011
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC-CeE
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG-VTI 324 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g-~~~ 324 (384)
....++++..++++.+|++.+..........+.+.+.+.+ +..
T Consensus 110 --------~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 110 --------TQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred --------CCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 1345666777788889988666654445777788888776 443
No 49
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.20 E-value=1.3e-09 Score=102.04 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.++..++... ++.+++|+|+++.+++.|+++++.++ + ++++++.+|.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~ 105 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNA 105 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEech
Confidence 4689999999999998888775 56799999999999999999998876 5 4688888874
No 50
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.14 E-value=3.1e-10 Score=114.89 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=69.0
Q ss_pred CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
|++|.++++.+.-.-+. .+.++.++.+++... ...+|||+|||+|.+++.++. .+.+|+|+|+|+.|+
T Consensus 200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~---------~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av 268 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREI---------PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAI 268 (374)
T ss_pred CEEEEECCCccccCCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHH
Confidence 55788888877766333 345555666665321 234899999999999988884 457999999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCC
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.|++|++.|+ +. +++++.+|.
T Consensus 269 ~~a~~N~~~~~-~~-~~~~~~~d~ 290 (374)
T TIGR02085 269 ACAQQSAQMLG-LD-NLSFAALDS 290 (374)
T ss_pred HHHHHHHHHcC-CC-cEEEEECCH
Confidence 99999999997 64 699988874
No 51
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.14 E-value=3.5e-09 Score=105.95 Aligned_cols=80 Identities=13% Similarity=-0.005 Sum_probs=58.1
Q ss_pred CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
.+.|+ +.++....++.+.+.. .....+|||||||+|.+...++...++.+++|+|+++.+++.|+++...+
T Consensus 90 ~~~~~-~~~e~~r~~~l~~~~l--------~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~ 160 (340)
T PLN02490 90 IINPG-HWTEDMRDDALEPADL--------SDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160 (340)
T ss_pred CeecC-cchHHHHHHHHhhccc--------CCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc
Confidence 34466 5566665555543321 12346899999999999888887777789999999999999999986532
Q ss_pred CCCCCceEEEEcCC
Q 016734 163 PHISELIEIRKVDN 176 (384)
Q Consensus 163 ~~l~~~I~~~~~d~ 176 (384)
++.++.+|.
T Consensus 161 -----~i~~i~gD~ 169 (340)
T PLN02490 161 -----ECKIIEGDA 169 (340)
T ss_pred -----CCeEEeccH
Confidence 367777663
No 52
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=3.4e-10 Score=104.31 Aligned_cols=93 Identities=11% Similarity=-0.041 Sum_probs=67.1
Q ss_pred cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (384)
Q Consensus 72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a 151 (384)
+-|..+..|++.-..+... -..+.+...+... -...++||++||||.+++.++.+.. ..|+++|+|+.+
T Consensus 16 ~kg~~l~~p~~~~~rpt~~--~vrea~f~~l~~~--------~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a 84 (189)
T TIGR00095 16 RGGRLLKLPPGGSTRPTTR--VVRELFFNILRPE--------IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKA 84 (189)
T ss_pred hCCcccCCCCCCCCCCchH--HHHHHHHHHHHHh--------cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHH
Confidence 3456667777655433233 2333444444321 1245899999999999988887643 389999999999
Q ss_pred HHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 152 LEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 152 l~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
++.+++|++.++ ++++++++.+|.
T Consensus 85 ~~~~~~N~~~~~-~~~~~~~~~~D~ 108 (189)
T TIGR00095 85 NQTLKENLALLK-SGEQAEVVRNSA 108 (189)
T ss_pred HHHHHHHHHHhC-CcccEEEEehhH
Confidence 999999999997 777899998874
No 53
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=7.8e-10 Score=114.20 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=99.1
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|..+..++... ++.+++|+|+++.+++.+++|+++++ +.+ |.++.+|..+
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~-v~~~~~D~~~---------------- 312 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTN-IETKALDARK---------------- 312 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCe-EEEEeCCccc----------------
Confidence 4589999999999999988876 56799999999999999999999998 654 8998887432
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
+...+ .+.||+|+||||+...... ..+|...+..+...+.
T Consensus 313 ------------------------------------~~~~~---~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~~ 352 (444)
T PRK14902 313 ------------------------------------VHEKF---AEKFDKILVDAPCSGLGVI-RRKPDIKYNKTKEDIE 352 (444)
T ss_pred ------------------------------------ccchh---cccCCEEEEcCCCCCCeee-ccCcchhhcCCHHHHH
Confidence 00001 2579999999998754321 2234333222211100
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHcC
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~g 321 (384)
.-......+++.+..+++++|.+. +.+...++...+...|++++
T Consensus 353 ---~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 353 ---SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 002344568888988888888654 45555556666666777764
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=99.10 E-value=7.7e-09 Score=103.39 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCce
Q 016734 90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELI 169 (384)
Q Consensus 90 ~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I 169 (384)
.++..+..+..++....++.. ......+|||||||+|.++..|+.++ +.+|+|+|+++.+++.|+++++.++ +.++|
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~-~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v 170 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDD-DEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG-LSDKV 170 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcc-cCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCce
Confidence 344445555555543221100 01245689999999999988888765 7899999999999999999999887 77789
Q ss_pred EEEEcCCC
Q 016734 170 EIRKVDNS 177 (384)
Q Consensus 170 ~~~~~d~~ 177 (384)
+++.+|..
T Consensus 171 ~~~~~D~~ 178 (340)
T PLN02244 171 SFQVADAL 178 (340)
T ss_pred EEEEcCcc
Confidence 99988743
No 55
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.7e-09 Score=111.30 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=101.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
...+|||+|||+|..+..++...++.+|+|+|+++.+++.+++|+++++ +. +.++.+|..+ +
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~~--~~~~~~D~~~--~------------- 305 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-LK--ATVIVGDARD--P------------- 305 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CC--eEEEEcCccc--c-------------
Confidence 3468999999999999999887776899999999999999999999987 54 6777777431 0
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
+.++ ..++||.|+||||+..+.... ..|..........+.
T Consensus 306 ----------------------------------~~~~-----~~~~fD~Vl~D~Pcs~~G~~~-~~p~~~~~~~~~~l~ 345 (427)
T PRK10901 306 ----------------------------------AQWW-----DGQPFDRILLDAPCSATGVIR-RHPDIKWLRRPEDIA 345 (427)
T ss_pred ----------------------------------hhhc-----ccCCCCEEEECCCCCcccccc-cCccccccCCHHHHH
Confidence 0000 245799999999998643221 233322211111000
Q ss_pred ccCch-HHHHHHHHHHHHHhhccCeEEE---EEecCCCCHHHHHHHHHHcC
Q 016734 275 CSGGE-RAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~t---~~vgk~~~l~~l~~~L~~~g 321 (384)
+ .....++++.+..+++.+|.+. |.+....+...+...|++++
T Consensus 346 ----~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 346 ----ALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 1 2445678899988888888753 45556778888888888764
No 56
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=5.6e-10 Score=100.34 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=47.6
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++||||||+|.+...++.+ +.+++|+|+|+.+++.+++|+... ++++++++|..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~ 69 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDAL 69 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchh
Confidence 458999999999999988876 579999999999999999998542 36899988754
No 57
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=1.6e-09 Score=103.56 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=51.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+.+|||+|||+|.++..|+.. +.+|+|+|+++++++.|++++...+ +.+++++++++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~ 102 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAA 102 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCH
Confidence 3468999999999998888764 6799999999999999999999887 777899988874
No 58
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.05 E-value=4.2e-09 Score=108.26 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=69.3
Q ss_pred CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
|+.|.++++.+...-|. .+.++.++.+.+.. ....+|||+|||+|.+++.++.. ..+|+|+|+++.|+
T Consensus 259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~---------~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av 327 (431)
T TIGR00479 259 DLSFSLSARDFFQVNSGQNEKLVDRALEALEL---------QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESV 327 (431)
T ss_pred CEEEEECCCceeecCHHHHHHHHHHHHHHhcc---------CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHH
Confidence 56778888877765333 44556666665532 12358999999999999998865 34899999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCC
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.|++|++.|+ +. +++++.+|.
T Consensus 328 ~~a~~n~~~~~-~~-nv~~~~~d~ 349 (431)
T TIGR00479 328 EKAQQNAELNG-IA-NVEFLAGTL 349 (431)
T ss_pred HHHHHHHHHhC-CC-ceEEEeCCH
Confidence 99999999997 64 699998874
No 59
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=2.2e-08 Score=96.61 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHH--HCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVK--SNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~--~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.+...++... +.++|+|+|+|++|++.|+++.. ... ..++|+++.+|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEccc
Confidence 4689999999999988888764 46799999999999999987754 222 234688888874
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.02 E-value=1.2e-08 Score=85.23 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..++||+|||+|..+..++.+.++.+|+|+|+++.+++.|++|++.++ +. +++++.+|
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~~ 77 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-VS-NIVIVEGD 77 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-CC-ceEEEecc
Confidence 358999999999999999988888899999999999999999999886 54 57877765
No 61
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.02 E-value=4.1e-09 Score=100.54 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.....++.. .++++++|+|+|+.|++.|++++..++ +..+++++.+|.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~ 118 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDI 118 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCCh
Confidence 458999999999988777763 578999999999999999999999887 667899988874
No 62
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.00 E-value=2.4e-09 Score=103.05 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|||||||+|.+...++.+ +.+++|+|+|+.+++.+++++... ++++++.+|..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~ 85 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDAL 85 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccc
Confidence 468999999999999998876 458999999999999999988542 36999988853
No 63
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.00 E-value=1.9e-08 Score=96.80 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=49.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|.....++... +..+|+|+|+++.+++.|++|++.++ +. +++++.+|.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~~-~v~~~~~d~ 137 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-YT-NVEFRLGEI 137 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-CC-CEEEEEcch
Confidence 34699999999998776666553 45689999999999999999998886 53 688887764
No 64
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.00 E-value=1.9e-08 Score=100.09 Aligned_cols=108 Identities=20% Similarity=0.372 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHhhccCCcEEEecCCCccC---CCcCHHHHHHHHH-HHhccCCCCCCCCCCCCCeEEEECCcccHHHHH
Q 016734 57 DFNATRELTRVLLLHDHGLNWWIPDGQLCP---TVPNRSNYIHWIE-DLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL 132 (384)
Q Consensus 57 ~~~av~~Lt~alL~~~fgl~~~vp~~~LiP---rvP~r~~yi~~i~-dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~ 132 (384)
|++.+..+.+. .+ .|+-+.|-+-| --|.|..|+..+. ..+..+.. ........+|||||||+|.++..
T Consensus 77 ~~~e~~~f~~~--a~----~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~--~~~~~~g~~ILDIGCG~G~~s~~ 148 (322)
T PLN02396 77 NEDELAKFSAI--AD----TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS--SAKPFEGLKFIDIGCGGGLLSEP 148 (322)
T ss_pred CHHHHHHHHHH--HH----HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh--hccCCCCCEEEEeeCCCCHHHHH
Confidence 56666665551 11 46666665544 2356777775443 23322110 00012345899999999999887
Q ss_pred HHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 133 LGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 133 La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
|+. .+.+|+|+|+++++++.|+.++..++ +..+|.++.++
T Consensus 149 La~--~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~d 188 (322)
T PLN02396 149 LAR--MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTT 188 (322)
T ss_pred HHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecC
Confidence 764 57899999999999999999987765 55578888876
No 65
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.99 E-value=7.5e-09 Score=95.43 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=46.2
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
+.+|||+|||+|.++..|+.+ +++|+|+|+|+.+++.|+++++.++ +. +.+...|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-~~--v~~~~~d 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-LP--LRTDAYD 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-CC--ceeEecc
Confidence 468999999999999888864 6899999999999999999998876 53 5555554
No 66
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.99 E-value=2.5e-09 Score=105.05 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|||||||+|.+...|+.. ..+++|+|+|+.+++.+++++..++ +.++++++++|..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal 95 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDAL 95 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHh
Confidence 458999999999999888765 4589999999999999999998876 5678999998853
No 67
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=1.1e-08 Score=94.04 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=51.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.++..++...++.+|+|+|+|+++++.|++|++.++ +. +++++.+|.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~~-~v~~~~~d~ 99 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-VK-NVEVIEGSA 99 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-CeEEEECch
Confidence 458999999999999888877778899999999999999999999987 54 588888763
No 68
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.98 E-value=2.3e-08 Score=94.59 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|||||||+|.....++... ++++++|+|+++.+++.|++++...+ ...++.++.+|..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~ 116 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIR 116 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChh
Confidence 4589999999999988888764 68999999999999999999998765 5567899888753
No 69
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.97 E-value=1.8e-09 Score=104.74 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=46.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|||||||+|.++..|+.+.+ +++|+|+|+.+++.+++++.. +++.++++|..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~ 97 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDAL 97 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhh
Confidence 45899999999999999987743 899999999999999987642 36899998854
No 70
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=1.8e-08 Score=96.30 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=44.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|.++..|+.+.++.+|+|+|+++.+++.|+++ .+.++.+|.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~ 81 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDV 81 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcCh
Confidence 45689999999999999999888889999999999999999652 256666663
No 71
>PRK04457 spermidine synthase; Provisional
Probab=98.95 E-value=1.2e-08 Score=98.57 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=60.5
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEE
Q 016734 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (384)
Q Consensus 93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~ 172 (384)
.|..++...+... ..+.+|||||||+|.++..++...|+.+++++|+|+++++.|+++...++ ..++++++
T Consensus 52 ~y~~~m~~~l~~~--------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~ 122 (262)
T PRK04457 52 AYTRAMMGFLLFN--------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVI 122 (262)
T ss_pred HHHHHHHHHHhcC--------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEE
Confidence 4777775544321 23568999999999999989888899999999999999999999987654 45689999
Q ss_pred EcCC
Q 016734 173 KVDN 176 (384)
Q Consensus 173 ~~d~ 176 (384)
.+|.
T Consensus 123 ~~Da 126 (262)
T PRK04457 123 EADG 126 (262)
T ss_pred ECCH
Confidence 8874
No 72
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.95 E-value=2e-08 Score=93.56 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=53.0
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+|||||||+|..+..++..+++.+++|+|+|+.+++.|++++...+ +.+++.++..|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~ 59 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDS 59 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence 6999999999998888888888899999999999999999999887 888899988774
No 73
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.95 E-value=1.3e-08 Score=104.67 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=99.9
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||+|||+|..+..++...++.+++|+|+++.+++.+++|+++++ +...+.+..+|...
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~----------------- 300 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRG----------------- 300 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-----------------
Confidence 468999999999999999887777799999999999999999999998 65333334443211
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+..+ ...++||.|+++||+..+.--. ..|...+..+..++.
T Consensus 301 ---------------------------------~~~~----~~~~~fD~VllDaPcSg~G~~~-~~p~~~~~~~~~~~~- 341 (426)
T TIGR00563 301 ---------------------------------PSQW----AENEQFDRILLDAPCSATGVIR-RHPDIKWLRKPRDIA- 341 (426)
T ss_pred ---------------------------------cccc----ccccccCEEEEcCCCCCCcccc-cCcchhhcCCHHHHH-
Confidence 0000 0246799999999987654322 234332222221110
Q ss_pred cCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734 276 SGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 276 ~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g 321 (384)
.-...-.+|++++..+++++|.+ ||-+...++-..+...|++++
T Consensus 342 --~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 342 --ELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 00234567889998888888876 355666678888888888764
No 74
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.94 E-value=9.6e-09 Score=97.74 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=45.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+.+|||+|||+|.++..++... ++.+|+|+|+++.+++.|++.++..+ .. +|+++++|.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~~-~i~~v~~da 107 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-LQ-NIEFVQGDA 107 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BT
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-CC-CeeEEEcCH
Confidence 35699999999999998888764 56799999999999999999999886 44 799999884
No 75
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.94 E-value=2.3e-08 Score=93.48 Aligned_cols=151 Identities=11% Similarity=0.093 Sum_probs=98.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||||||+|.+...+++.. +..+|+|+|+++. ++ +. .+.++++|..+. . .
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-~~-~v~~i~~D~~~~--~---------~-- 105 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-IV-GVDFLQGDFRDE--L---------V-- 105 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-CC-CcEEEecCCCCh--H---------H--
Confidence 4589999999999988888775 3469999999981 22 32 388888885420 0 0
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECC-CcccchhhhccCCccccCCCcccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP-PFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNP-Py~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
+ ..+...+ ..+.||+|+||+ |++........ ..
T Consensus 106 ----------~-----------------------~~i~~~~--~~~~~D~V~S~~~~~~~g~~~~d~---------~~-- 139 (209)
T PRK11188 106 ----------L-----------------------KALLERV--GDSKVQVVMSDMAPNMSGTPAVDI---------PR-- 139 (209)
T ss_pred ----------H-----------------------HHHHHHh--CCCCCCEEecCCCCccCCChHHHH---------HH--
Confidence 0 0001111 246899999998 66532110000 00
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe---eEEEEEEec
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~~AWsf 344 (384)
...+...+++++.++++.+|+|.+-+-..+.+.++...|++ .|..+++++..+++. ..++|+-.|
T Consensus 140 -----~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~~~ 207 (209)
T PRK11188 140 -----AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR 207 (209)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEeecc
Confidence 12235678889999999999998755557778888766653 578899999999874 455555444
No 76
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.94 E-value=8.5e-09 Score=99.58 Aligned_cols=142 Identities=12% Similarity=0.094 Sum_probs=92.9
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|..+..++.... ...|+|+|+++.+++.+++|+++++ +. .|.++..|...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~---------------- 133 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-VL-NVAVTNFDGRV---------------- 133 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEecCCHHH----------------
Confidence 45899999999999998887764 3589999999999999999999998 54 48888776321
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
+.. ..+.||.|++|||+....-. ..+|.....-+...+.
T Consensus 134 -------------------------------------~~~---~~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~~ 172 (264)
T TIGR00446 134 -------------------------------------FGA---AVPKFDAILLDAPCSGEGVI-RKDPSRKKNWSEEDIQ 172 (264)
T ss_pred -------------------------------------hhh---hccCCCEEEEcCCCCCCccc-ccChhhhhcCCHHHHH
Confidence 000 12459999999998754322 1233221111111000
Q ss_pred ccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHc
Q 016734 275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV 320 (384)
Q Consensus 275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~ 320 (384)
. ...-..+++.+..+++++|++ |+-+...++-.-+...|+++
T Consensus 173 ----~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 173 ----EISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 1 123456888998888888865 34444444444555556655
No 77
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.94 E-value=2.5e-08 Score=108.74 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc----c--------------------------
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL----L-------------------------- 138 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~----~-------------------------- 138 (384)
|-++.+...+..+..- + .....++|.+||||.|.+..|... |
T Consensus 172 pl~etlAaa~l~~a~w---~-----~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 172 PLKENLAAAILLRSGW---P-----QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CCcHHHHHHHHHHcCC---C-----CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 6677766655543221 0 124689999999999987655420 1
Q ss_pred ------------CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 139 ------------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 139 ------------~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+++|+|+|+.|++.|++|++.++ +.+.|.++++|..
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~ 293 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVA 293 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChh
Confidence 1369999999999999999999998 8888999998854
No 78
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.92 E-value=4e-08 Score=95.88 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.+|||+|||+|..+..|+.. +++|+|+|+|+.|++.|+++++.++ + .+.+...|.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~ 176 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDI 176 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEech
Confidence 358999999999998888763 6899999999999999999999887 5 477776653
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=1.5e-08 Score=94.08 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.++..++.... +.+|+|+|+++++++.|++|++.++ +.++++++.+|.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~ 133 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDG 133 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCc
Confidence 45899999999999988887654 5699999999999999999999987 777799998874
No 80
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.8e-09 Score=95.21 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
++.+++|+|||+|.+. .+..+++ -.|+|+||||+||+.+.+|++... + .+.++++++.
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE-v--qidlLqcdil 106 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFE-V--QIDLLQCDIL 106 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhh-h--hhheeeeecc
Confidence 5678999999999986 4445554 479999999999999999999875 4 3688888754
No 81
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.89 E-value=6.3e-08 Score=88.85 Aligned_cols=133 Identities=18% Similarity=0.170 Sum_probs=97.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
...+++|||||||.|++-++...|..+++|+|-++++++..++|+++.+ + +++.++.++..+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~g~Ap~---------------- 95 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVEGDAPE---------------- 95 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEeccchH----------------
Confidence 3458999999999999999977899999999999999999999999998 4 479999887321
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
.+.+. .+||.+
T Consensus 96 ------------------------------------~L~~~----~~~dai----------------------------- 106 (187)
T COG2242 96 ------------------------------------ALPDL----PSPDAI----------------------------- 106 (187)
T ss_pred ------------------------------------hhcCC----CCCCEE-----------------------------
Confidence 11111 133433
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT 335 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t 335 (384)
+.||+ .=+..+++.+...++.+|-...-.-..+++..+.+.|++.|+.++..+....|+.
T Consensus 107 FIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~ 166 (187)
T COG2242 107 FIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKP 166 (187)
T ss_pred EECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeeccee
Confidence 22333 3477778888887777776655555578888889999999985344444445543
No 82
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.88 E-value=8.9e-09 Score=84.40 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=44.7
Q ss_pred EEEECCcccHHHHHHHhhc---cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 119 GFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~~---~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
|||+|||+|.....++..+ +..+++|+|+|+++++.|+++....+ . .++++++|..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHh
Confidence 7999999999998888765 45899999999999999999998765 4 6889988853
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.88 E-value=1e-07 Score=92.10 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=46.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|..+..|+.. .+++|+|+|+++.+++.|+++.... ++|.++.+|.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~ 108 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDI 108 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCc
Confidence 3468999999999988777755 4789999999999999999886532 3688887764
No 84
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.88 E-value=7.1e-09 Score=98.58 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCc
Q 016734 90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (384)
Q Consensus 90 ~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~ 168 (384)
+...++.++.... ...+|||||||+|+.++.++...+ +.+++++|+|+++++.|++|++.++ +.++
T Consensus 55 ~~g~~L~~l~~~~------------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~ 121 (234)
T PLN02781 55 DEGLFLSMLVKIM------------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHK 121 (234)
T ss_pred HHHHHHHHHHHHh------------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCc
Confidence 5555666555443 345899999999998888877654 5699999999999999999999998 8889
Q ss_pred eEEEEcCCC
Q 016734 169 IEIRKVDNS 177 (384)
Q Consensus 169 I~~~~~d~~ 177 (384)
|+++.+|..
T Consensus 122 i~~~~gda~ 130 (234)
T PLN02781 122 INFIQSDAL 130 (234)
T ss_pred EEEEEccHH
Confidence 999999854
No 85
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.88 E-value=2.3e-08 Score=92.33 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=48.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.+|||+|||+|..+..|+.+ +++|+|+|+|+.+++.|+++++.++ +. .++++..|.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-~~-~v~~~~~d~ 87 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-LD-NLHTAVVDL 87 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-CC-cceEEecCh
Confidence 468999999999999888864 6899999999999999999999886 54 477766653
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=103.60 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHh--hccCCcEEE-----ecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHH
Q 016734 58 FNATRELTRVLL--LHDHGLNWW-----IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130 (384)
Q Consensus 58 ~~av~~Lt~alL--~~~fgl~~~-----vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~ 130 (384)
|.-+-.|.+||- .+.|.+++- .-.+.+..+ ..|+.-..+++..-. ......+||||||+|...
T Consensus 68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~------~~~~p~vLEIGcGsG~~l 137 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLK----KPYILDIDNFLDFIS------KNQEKILIEIGFGSGRHL 137 (390)
T ss_pred ccchHHHHHHHHHHHHHhhcccccccccccccccccc----ccccCCHHHHHHHhc------CCCCCeEEEEcCcccHHH
Confidence 444667777763 445544322 222344433 334433334443211 123458999999999999
Q ss_pred HHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 131 ~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|.+.|++.++|+|+++.+++.|.+++..++ +. +|.++++|.
T Consensus 138 l~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L~-NV~~i~~DA 181 (390)
T PRK14121 138 LYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-LK-NLLIINYDA 181 (390)
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEECCH
Confidence 999999999999999999999999999999987 75 499998874
No 87
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.6e-08 Score=104.29 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=99.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|..+..++... ++.+|+|+|+++.+++.+++|+++.+ +. .|.++.+|...
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~---------------- 299 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAER---------------- 299 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhh----------------
Confidence 4589999999999998888765 45799999999999999999999997 65 48888877421
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
+... ..++||.|+|+||+...... ..+|..........+
T Consensus 300 -------------------------------------l~~~--~~~~fD~Vl~DaPCsg~G~~-~~~p~~~~~~~~~~~- 338 (431)
T PRK14903 300 -------------------------------------LTEY--VQDTFDRILVDAPCTSLGTA-RNHPEVLRRVNKEDF- 338 (431)
T ss_pred -------------------------------------hhhh--hhccCCEEEECCCCCCCccc-cCChHHHHhCCHHHH-
Confidence 0000 13579999999999765432 122322111111100
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g 321 (384)
.+-..+-.+|+.++..+++.+|.+ ||-+...++-..|...|+++.
T Consensus 339 --~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 339 --KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK 386 (431)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence 001235678899999988888765 455666667777777887653
No 88
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.88 E-value=1.7e-07 Score=87.12 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=51.7
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.....++...+ ..+++++|+++.+++.|++++..++ +...+.++.+|.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEeccc
Confidence 46899999999999988887776 6899999999999999999998765 566788887764
No 89
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.86 E-value=1.7e-08 Score=100.20 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=62.5
Q ss_pred CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
||....+....+.++ ++++..+..+.+++.... .....+|||||||+|.++..|+.. +.+|+|+|+++.|+
T Consensus 109 y~~~d~v~~~~l~~~-~~~~~~v~~~l~~l~~~~------~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml 179 (315)
T PLN02585 109 YGETDEVNKVQLDIR-LGHAQTVEKVLLWLAEDG------SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMV 179 (315)
T ss_pred cCCccccCceeeecc-cChHHHHHHHHHHHHhcC------CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence 444455666678888 887777777777765310 013468999999999998888854 68999999999999
Q ss_pred HHHHHHHHHC
Q 016734 153 EWAEKNVKSN 162 (384)
Q Consensus 153 ~~A~~Ni~~n 162 (384)
+.|++++...
T Consensus 180 ~~A~~~~~~~ 189 (315)
T PLN02585 180 AEAERRAKEA 189 (315)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 90
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.86 E-value=7e-09 Score=95.28 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=62.2
Q ss_pred CCcEEEecCC-CccCCCcC--HHHHHHHHHHH-hccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 73 HGLNWWIPDG-QLCPTVPN--RSNYIHWIEDL-LSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 73 fgl~~~vp~~-~LiPrvP~--r~~yi~~i~dl-l~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
-|..+..|++ .+=|+ ++ ||....|+... + ...++||+.||||++++-.+++. ..+|+.||.|
T Consensus 9 kgr~l~~p~~~~~RPT-~drvrealFniL~~~~~------------~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~ 74 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPT-TDRVREALFNILQPRNL------------EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKN 74 (183)
T ss_dssp TT-EEE-TT--TS-SS-SHHHHHHHHHHHHCH-H------------TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-
T ss_pred CCCEecCCCCCCcCCC-cHHHHHHHHHHhccccc------------CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECC
Confidence 4667888885 55566 66 35555555543 2 34689999999999998766553 2489999999
Q ss_pred HHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 149 DVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.+++..++|++..+ +++++.++..|.
T Consensus 75 ~~a~~~i~~N~~~l~-~~~~~~v~~~d~ 101 (183)
T PF03602_consen 75 RKAIKIIKKNLEKLG-LEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHHHT--GGGEEEEESSH
T ss_pred HHHHHHHHHHHHHhC-CCcceeeeccCH
Confidence 999999999999997 788899988873
No 91
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=1.8e-07 Score=91.33 Aligned_cols=97 Identities=9% Similarity=0.001 Sum_probs=63.6
Q ss_pred cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (384)
Q Consensus 72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a 151 (384)
+||.-+.+......-. .....|-+.+....... ...+.+|||||||.|.++..+++.....+|+++|+|+.+
T Consensus 41 ~~g~~l~lDg~~q~~~-~de~~Y~e~l~h~~~~~-------~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~v 112 (283)
T PRK00811 41 EFGRLLALDGCVMTTE-RDEFIYHEMMTHVPLFA-------HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERV 112 (283)
T ss_pred CccEEEEECCeeeecC-cchhhHHHHhhhHHHhh-------CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHH
Confidence 3555555554433332 33345555444332221 124568999999999998877754345699999999999
Q ss_pred HHHHHHHHHHCC-CC--CCceEEEEcCC
Q 016734 152 LEWAEKNVKSNP-HI--SELIEIRKVDN 176 (384)
Q Consensus 152 l~~A~~Ni~~n~-~l--~~~I~~~~~d~ 176 (384)
++.|+++....+ .+ ..+++++.+|.
T Consensus 113 v~~a~~~~~~~~~~~~~d~rv~v~~~Da 140 (283)
T PRK00811 113 VEVCRKYLPEIAGGAYDDPRVELVIGDG 140 (283)
T ss_pred HHHHHHHhHHhccccccCCceEEEECch
Confidence 999999886421 01 35788888874
No 92
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.85 E-value=1.4e-07 Score=87.87 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=49.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|.+...++.. +.+++|+|+|+++++.|++++..++ ..+++.+..+|.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~ 113 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDL 113 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence 3568999999999998888754 5699999999999999999998776 556788887763
No 93
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.85 E-value=1.3e-08 Score=102.61 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734 91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (384)
Q Consensus 91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~ 170 (384)
++.++.++.+.+.. ...++||++||+|.+++.|+... .+|+|+|+++.|++.|++|++.|+ +. +++
T Consensus 192 ~e~l~~~v~~~~~~----------~~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-~~-~v~ 257 (362)
T PRK05031 192 NEKMLEWALDATKG----------SKGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-ID-NVQ 257 (362)
T ss_pred HHHHHHHHHHHhhc----------CCCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-CC-cEE
Confidence 67778888776642 12369999999999999888653 389999999999999999999998 65 699
Q ss_pred EEEcCCC
Q 016734 171 IRKVDNS 177 (384)
Q Consensus 171 ~~~~d~~ 177 (384)
++.+|..
T Consensus 258 ~~~~d~~ 264 (362)
T PRK05031 258 IIRMSAE 264 (362)
T ss_pred EEECCHH
Confidence 9988853
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.83 E-value=3.5e-08 Score=92.13 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|.++..|+.... ..+|+|+|+++++++.|++|++.++ + ++++++.+|.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~ 137 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDG 137 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCc
Confidence 346899999999999988887653 4679999999999999999999997 6 4689988874
No 95
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=5.2e-08 Score=100.50 Aligned_cols=147 Identities=14% Similarity=0.044 Sum_probs=99.5
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|..+..++.... ..+|+|+|+++.+++.+++|+++++ +. .|.++.+|..+. +
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~-~------------- 316 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNL-L------------- 316 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhc-c-------------
Confidence 46899999999999998887754 4699999999999999999999998 65 488888874320 0
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
..+ . ...++||.|+++||....... ...|...+.-+...+
T Consensus 317 -----------------------------------~~~-~--~~~~~fD~Vl~DaPCSg~G~~-~r~p~~~~~~~~~~~- 356 (434)
T PRK14901 317 -----------------------------------ELK-P--QWRGYFDRILLDAPCSGLGTL-HRHPDARWRQTPEKI- 356 (434)
T ss_pred -----------------------------------ccc-c--cccccCCEEEEeCCCCccccc-ccCcchhhhCCHHHH-
Confidence 000 0 013579999999997543221 123322111111100
Q ss_pred ccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734 275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 275 ~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g 321 (384)
-+ ...-.+|++++..+++.+|-+ ||.+...++...+...|++++
T Consensus 357 ---~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 357 ---QELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 01 123467889988888887744 456777788888888898874
No 96
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.81 E-value=9.9e-08 Score=87.10 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=97.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
...+|||||||+|.+...++.+. +..+++|+|+++.+ . . ..+.++.+|..+..+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~----------- 87 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVL----------- 87 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHH-----------
Confidence 34689999999999988888776 45689999999854 1 1 1367777764320000
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECC--CcccchhhhccCCccccCCCcc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP--PFFESMEEAGLNPKTSCGGTPE 271 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNP--Py~~s~~~~~~~p~~~~~g~~~ 271 (384)
..+.... ..++||+|+||+ ||.... ..+ ...
T Consensus 88 -----------------------------------~~l~~~~--~~~~~D~V~~~~~~~~~g~~---~~~-------~~~ 120 (188)
T TIGR00438 88 -----------------------------------NKIRERV--GDDKVDVVMSDAAPNISGYW---DID-------HLR 120 (188)
T ss_pred -----------------------------------HHHHHHh--CCCCccEEEcCCCCCCCCCc---ccc-------HHH
Confidence 0000011 245799999995 331110 000 000
Q ss_pred cccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe---eEEEEEEec
Q 016734 272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (384)
Q Consensus 272 E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~~AWsf 344 (384)
.......+++.+.++++++|.+..++....++.++...|++. +..+.+.++..|+- .+.+|+-.|
T Consensus 121 -------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 121 -------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred -------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCCCCCCcccceEEEEEecC
Confidence 122356677888888888888877777678888999888875 77788888888873 666666443
No 97
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=6.2e-08 Score=100.28 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=96.8
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+|||+|..+..++.... ..+|+|+|+++.+++.+++|+++++ +. .|+++.+|..+
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~~-~v~~~~~Da~~---------------- 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-IT-IIETIEGDARS---------------- 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-CC-eEEEEeCcccc----------------
Confidence 45899999999998888877653 4699999999999999999999997 64 58888877421
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
+. ..+.||.|+++||+..+.... .+|......+...+.
T Consensus 313 ------------------------------------~~-----~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~~~~~~~~ 350 (445)
T PRK14904 313 ------------------------------------FS-----PEEQPDAILLDAPCTGTGVLG-RRAELRWKLTPEKLA 350 (445)
T ss_pred ------------------------------------cc-----cCCCCCEEEEcCCCCCcchhh-cCcchhhcCCHHHHH
Confidence 00 235799999999986654322 233322111111000
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g 321 (384)
. -...-..|+..+..+++.+|.+ ||-+.+.++-..+...|+++.
T Consensus 351 ~---l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 351 E---LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP 397 (445)
T ss_pred H---HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 0 0123456888888888888865 445555566666777787763
No 98
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.81 E-value=2.9e-07 Score=85.71 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..+|||||||+|.++..|+.. +.+++|+|+++.+++.|+++....+ +.+++.+..+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d 120 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGD 120 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcC
Confidence 468999999999998888764 4579999999999999999998876 65678888776
No 99
>PRK08317 hypothetical protein; Provisional
Probab=98.80 E-value=5.1e-07 Score=83.50 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=57.4
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
|-.+.|..++.+.+.. ....+|||+|||+|.+...++... +..+++|+|+++.+++.|+++... ...
T Consensus 2 ~~~~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~ 69 (241)
T PRK08317 2 PDFRRYRARTFELLAV---------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGP 69 (241)
T ss_pred chHHHHHHHHHHHcCC---------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCC
Confidence 4456666666665543 234689999999999998888776 678999999999999999998432 234
Q ss_pred ceEEEEcCC
Q 016734 168 LIEIRKVDN 176 (384)
Q Consensus 168 ~I~~~~~d~ 176 (384)
.+.++..|.
T Consensus 70 ~~~~~~~d~ 78 (241)
T PRK08317 70 NVEFVRGDA 78 (241)
T ss_pred ceEEEeccc
Confidence 678777663
No 100
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.79 E-value=9.2e-09 Score=97.58 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=52.8
Q ss_pred CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
.|-|++||.-....-- .....+|||+|||-|.++..+|.. |+.|+|+|+++++++.|+..+..++
T Consensus 41 N~~rl~~i~~~~~~~~---------~l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 41 NPLRLDYIREVARLRF---------DLPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred ccchhhhhhhhhhccc---------CCCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcc
Confidence 4779888875553210 124679999999999999888854 5899999999999999999999887
No 101
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.79 E-value=3.1e-08 Score=99.73 Aligned_cols=89 Identities=11% Similarity=0.244 Sum_probs=65.2
Q ss_pred cEEEecCCCcc-CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734 75 LNWWIPDGQLC-PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (384)
Q Consensus 75 l~~~vp~~~Li-PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~ 153 (384)
+.+.++++.+. |-....+.++.++.+.+.. .+.++||+|||+|.+++.|+... .+|+|+|+++.|++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~----------~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~ 233 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG----------SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVN 233 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhc----------CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHH
Confidence 34444554443 1111236667788777642 11369999999999999888664 38999999999999
Q ss_pred HHHHHHHHCCCCCCceEEEEcCCC
Q 016734 154 WAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 154 ~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.|++|++.|+ ++ +++++.+|..
T Consensus 234 ~a~~n~~~~~-~~-~v~~~~~d~~ 255 (353)
T TIGR02143 234 AAQYNIAANN-ID-NVQIIRMSAE 255 (353)
T ss_pred HHHHHHHHcC-CC-cEEEEEcCHH
Confidence 9999999998 65 5999988853
No 102
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.77 E-value=7.6e-08 Score=91.91 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=54.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+.+|||+|||||-++..+++.....+|+|+|+|+.||+.|++-+..-+ ..+ |+++++|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dA 110 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDA 110 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEech
Confidence 4579999999999999999988888899999999999999999998776 555 99999984
No 103
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.77 E-value=9.1e-08 Score=91.20 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=46.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|.+...++...++.+|+|+|+++.+++.|+++.. ++.++.+|.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d~ 85 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEADI 85 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECch
Confidence 3468999999999999889888888999999999999999987641 366776663
No 104
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.76 E-value=2.4e-07 Score=84.77 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (384)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~ 171 (384)
+..|.|+.|......+ +....+|||+|||.|.+..-|+++......+|||.++.|+++|+..+++++ +++.|++
T Consensus 49 ~riv~wl~d~~~~~rv-----~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f 122 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRV-----SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRF 122 (227)
T ss_pred HHHHHHHHhhhhhhhh-----cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeE
Confidence 4578899988763221 122338999999999999889887766679999999999999999999998 8988999
Q ss_pred EEcCCC
Q 016734 172 RKVDNS 177 (384)
Q Consensus 172 ~~~d~~ 177 (384)
.+.|+.
T Consensus 123 ~q~DI~ 128 (227)
T KOG1271|consen 123 QQLDIT 128 (227)
T ss_pred EEeecc
Confidence 998865
No 105
>PRK06922 hypothetical protein; Provisional
Probab=98.75 E-value=1.9e-07 Score=99.94 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.....++...++.+++|+|+++.+++.|+++...++ .++.++.+|.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa 476 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDA 476 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcch
Confidence 468999999999998888888899999999999999999999886554 2577777764
No 106
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.75 E-value=3.8e-08 Score=99.15 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=50.8
Q ss_pred CeEEEECCcccHHHHHHHhhccC--------------------------------C-------EEEEEeCcHHHHHHHHH
Q 016734 117 VKGFDIGTGANCIYPLLGASLLG--------------------------------W-------SFVGSDMTDVALEWAEK 157 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~--------------------------------~-------~v~gvDid~~al~~A~~ 157 (384)
..++|-=||||.|.+-.|...++ + .++|+|||+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 47999999999998876654421 1 37899999999999999
Q ss_pred HHHHCCCCCCceEEEEcCCC
Q 016734 158 NVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 158 Ni~~n~~l~~~I~~~~~d~~ 177 (384)
|++..+ +.+.|+|.+.|..
T Consensus 273 NA~~AG-v~d~I~f~~~d~~ 291 (381)
T COG0116 273 NARAAG-VGDLIEFKQADAT 291 (381)
T ss_pred HHHhcC-CCceEEEEEcchh
Confidence 999998 8999999999854
No 107
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.75 E-value=2.7e-07 Score=87.74 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=36.2
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni 159 (384)
..+|||||||+|.+...++. .+.+++|+|+|+.+++.|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhC
Confidence 46899999999988777764 4689999999999999998874
No 108
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.75 E-value=2.6e-07 Score=90.62 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...++||||||+|.++..+++++|+.+++++|. +.+++.|++|++..+ +.++|+++.+|..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~ 209 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY 209 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCcc
Confidence 346999999999999999999999999999998 789999999999998 8889999998853
No 109
>PRK04266 fibrillarin; Provisional
Probab=98.75 E-value=1.4e-06 Score=82.60 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=47.1
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.+...|+...+..+|+|+|+++.+++.+.++++.. .+|.++.+|.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~ 129 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADA 129 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCC
Confidence 45899999999999988887765568999999999999888887653 2477887774
No 110
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.74 E-value=5.6e-08 Score=102.46 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=45.7
Q ss_pred CCCeEEEECCcccHHHHHHHhhcc--------CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~--------~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
...+|||.|||+|++...++...+ ...++|+|||+.++..|+.|+...+.+ .+.+...|
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~--~~~i~~~d 97 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL--EINVINFN 97 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC--Cceeeecc
Confidence 456899999999999888776553 257999999999999999999876421 24555444
No 111
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.74 E-value=1.4e-07 Score=74.64 Aligned_cols=51 Identities=31% Similarity=0.436 Sum_probs=41.9
Q ss_pred EEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 120 LDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
||+|||+|.....|++. ++.+++|+|+++.+++.|+++....+ +.++.+|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~ 51 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDA 51 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBT
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehH
Confidence 89999999999888877 88999999999999999999886553 55777764
No 112
>PRK03612 spermidine synthase; Provisional
Probab=98.73 E-value=5.9e-08 Score=102.41 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=88.7
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCC----CCC-CceEEEEcCCCCCCCccccccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNP----HIS-ELIEIRKVDNSESTPSIQESLT 188 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~----~l~-~~I~~~~~d~~~~~p~~~~~~~ 188 (384)
++.+|||||||+|.+...+++ .+. .+++++|+|+++++.|++|..... .++ ++++++.+|..+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~---------- 365 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN---------- 365 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----------
Confidence 456899999999998877765 454 699999999999999999642111 122 478888877421
Q ss_pred CCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCC
Q 016734 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG 268 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g 268 (384)
.+. ...++||+|++|+|.-.. |.
T Consensus 366 ------------------------------------------~l~---~~~~~fDvIi~D~~~~~~-------~~----- 388 (521)
T PRK03612 366 ------------------------------------------WLR---KLAEKFDVIIVDLPDPSN-------PA----- 388 (521)
T ss_pred ------------------------------------------HHH---hCCCCCCEEEEeCCCCCC-------cc-----
Confidence 111 124689999999875321 10
Q ss_pred CcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec----CCCCHHHHHHHHHHcCCeEEEEE
Q 016734 269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGVTIVKTT 328 (384)
Q Consensus 269 ~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg----k~~~l~~l~~~L~~~g~~~v~~~ 328 (384)
... .+-..+++...+.++++|.+.+..+ ....+..+.+.|++.|+ .+...
T Consensus 389 -~~~--------L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~ 442 (521)
T PRK03612 389 -LGK--------LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPY 442 (521)
T ss_pred -hhc--------cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEE
Confidence 000 1123334455567788888766433 24446778889999999 44443
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.73 E-value=7.4e-08 Score=89.79 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=43.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..+|||||||+|.+...|+...++.+++|+|+|+.|++.|+++.. .+.++.+|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d 96 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGS 96 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEee
Confidence 457999999999999888877778899999999999999988642 24556655
No 114
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.73 E-value=6.9e-07 Score=83.78 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=45.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..+|||||||+|.++..++.. +.+++++|+++.+++.|++++..++ + .+.++..+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~~~~~ 103 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-L--KIDYRQTT 103 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEEEecC
Confidence 468999999999998777754 5789999999999999999998775 3 46666654
No 115
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.72 E-value=4.2e-07 Score=82.13 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=84.5
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccc
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (384)
.|+|++||.|.-.+.+|..+ .+|+|+|+|+..+++|+.|++-.| ++++|.++++|..+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~------------------- 59 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFE------------------- 59 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHH-------------------
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHH-------------------
Confidence 69999999999998998763 479999999999999999999998 88999999998532
Q ss_pred cccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccC
Q 016734 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (384)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~G 277 (384)
++..+. ....||+|++.||+--..-... + .+.-. ..| .+
T Consensus 60 ---------------------------------~~~~~~-~~~~~D~vFlSPPWGGp~Y~~~--~--~fdL~-~~~-~p- 98 (163)
T PF09445_consen 60 ---------------------------------LLKRLK-SNKIFDVVFLSPPWGGPSYSKK--D--VFDLE-KSM-QP- 98 (163)
T ss_dssp ---------------------------------HGGGB-------SEEEE---BSSGGGGGS--S--SB-TT-TSS-SS-
T ss_pred ---------------------------------HHhhcc-ccccccEEEECCCCCCcccccc--C--ccCHH-Hcc-CC-
Confidence 011110 1122899999999974321110 0 01000 011 11
Q ss_pred chHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcC--CeEEEEEEeeCCCeeE
Q 016734 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEFVQGQTCR 337 (384)
Q Consensus 278 Gel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g--~~~v~~~e~~qG~t~R 337 (384)
+ =+..|++.+..+-..+. ..+.|..++.+|.+++++.. -..+++.+........
T Consensus 99 --~-~~~~l~~~~~~~t~nv~---l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~~k 154 (163)
T PF09445_consen 99 --F-NLEDLLKAARKITPNVV---LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGKLK 154 (163)
T ss_dssp -----HHHHHHHHHHH-S-EE---EEEETTB-HHHHHHT----T-TTEEEEEEEEEETTEEE
T ss_pred --C-CHHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCeeE
Confidence 0 14455556655554444 45888999999988865542 2445665554443333
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.71 E-value=3.3e-07 Score=71.65 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=44.6
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+++|+|||+|.+...++. ....+++++|+++.++..++++...+ ...++.++..|.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 56 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDA 56 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcCh
Confidence 489999999998877776 56789999999999999998754443 335688887764
No 117
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.71 E-value=1.9e-07 Score=91.54 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=44.3
Q ss_pred CCCeEEEECCcccHHHHHHHhh-------ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC-ceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGAS-------LLGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~-------~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~-~I~~~~~d~ 176 (384)
...+|+|.+||+|.+...+... ....+++|+|+++.++.+|+.|+..++ ... .+.+..+|.
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQGDS 114 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEES-T
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-ccccccccccccc
Confidence 3458999999999987666553 367899999999999999999998775 332 245666653
No 118
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.65 E-value=3.2e-06 Score=77.76 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||+|||+|.+...++...+. .+++|+|+++.+++.++++.. ...++.++.+|.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~ 97 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADA 97 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecch
Confidence 3568999999999998888877765 799999999999999999875 234688887764
No 119
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.64 E-value=1.7e-07 Score=91.39 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=56.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...++||||||-|.+.+.+|+++ +++|+|+++|++.++.|++-++.-+ ++++|+++.+|..+
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd 133 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRD 133 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEeccccc
Confidence 45699999999999998888765 9999999999999999999999998 89999999998654
No 120
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.63 E-value=5.9e-07 Score=83.29 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.+|||||||+|.+...++...+..+++|+|+++.+++.|+.+.. +++.++.+|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~ 89 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDA 89 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecch
Confidence 468999999999999999888888899999999999999987653 2467777764
No 121
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.62 E-value=1.6e-07 Score=89.88 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|||||||+|.+...|+.+.+ +++|+|+|+.+++.++.+... .+++.++++|..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~ 85 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDAL 85 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchh
Confidence 346899999999999999987653 699999999999999988743 236888888754
No 122
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.62 E-value=1.2e-06 Score=87.30 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=43.8
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||||||+|..+..++...+. .|+|+|+++.++..++...+..+ ...+|.++.++.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~ 181 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGI 181 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCH
Confidence 3468999999999988877766443 69999999999876655443332 234688877663
No 123
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=4.3e-07 Score=84.91 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.++..++... ++.+|+|+|+++++++.|++|++.++ +. +|+++.+|.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~~-~v~~~~gd~ 136 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-YD-NVEVIVGDG 136 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CeEEEECCc
Confidence 4589999999999998888764 34699999999999999999999887 53 699998874
No 124
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=8.2e-07 Score=85.00 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=99.7
Q ss_pred CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
...+|||.|||||+++..|+.. .+.-+|+..|+.++.++.|++|++..+ +.++|.+..+|+.+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~--------------- 157 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVRE--------------- 157 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccc---------------
Confidence 3569999999999999999854 455699999999999999999999987 88889998888653
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
.. .++.||.++--=| +|
T Consensus 158 ----------------------------------------~~--~~~~vDav~LDmp----------~P----------- 174 (256)
T COG2519 158 ----------------------------------------GI--DEEDVDAVFLDLP----------DP----------- 174 (256)
T ss_pred ----------------------------------------cc--cccccCEEEEcCC----------Ch-----------
Confidence 00 1235676654311 12
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~ 331 (384)
-+.++.....++.++++.+.+.--.|++.+.+.|++.|+.++++.|..
T Consensus 175 ----------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 175 ----------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred ----------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheee
Confidence 122344555678889999999888899999999999999999998876
No 125
>PRK06202 hypothetical protein; Provisional
Probab=98.59 E-value=1.3e-07 Score=89.08 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=40.3
Q ss_pred CCCeEEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
...+|||||||+|.++..|+.. .++++++|+|+++.+++.|+++...++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~ 112 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG 112 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC
Confidence 4568999999999988777753 346799999999999999998865443
No 126
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.59 E-value=7.1e-07 Score=82.88 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...+|||+|||+|..+..++... .+++++|+++.+++.|++|++.++ +.+ ++++.+|.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-~~~-v~~~~~d~ 135 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-LHN-VSVRHGDG 135 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-CCc-eEEEECCc
Confidence 34689999999999887776553 389999999999999999999987 653 88888763
No 127
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.57 E-value=8.3e-07 Score=90.37 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=44.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..+|||||||+|.++..++.. .+++|+|+|+|+++++.|+++++ + + .+++...|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~--~-l--~v~~~~~D 221 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCA--G-L--PVEIRLQD 221 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhc--c-C--eEEEEECc
Confidence 458999999999998877755 47899999999999999999984 2 3 26666554
No 128
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.56 E-value=4e-06 Score=80.60 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=95.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
...+|||.|||||++...|+... |.-+|+..|+.++.++.|++|++.++ +.+.|++.+.|+.+.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~-------------- 104 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE-------------- 104 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--------------
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc--------------
Confidence 35689999999999999998654 66699999999999999999999998 888999999986420
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
+ |.. . .+..+|.|+--=| +|..+
T Consensus 105 --------g-------------~~~---------------~---~~~~~DavfLDlp----------~Pw~~-------- 127 (247)
T PF08704_consen 105 --------G-------------FDE---------------E---LESDFDAVFLDLP----------DPWEA-------- 127 (247)
T ss_dssp -----------------------ST---------------T----TTSEEEEEEESS----------SGGGG--------
T ss_pred --------c-------------ccc---------------c---ccCcccEEEEeCC----------CHHHH--------
Confidence 0 000 0 1245776643211 23221
Q ss_pred cccCchHHHHHHHHHHHHHhh-ccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee
Q 016734 274 VCSGGERAFITRIIEDSVALK-QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~-~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~ 331 (384)
| ..+...+ +.+|++.+.+.--.|+..+.+.|++.||.++++.|..
T Consensus 128 ---------i----~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 128 ---------I----PHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp ---------H----HHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---------H----HHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEE
Confidence 1 1222234 7899999999988899999999999999999999986
No 129
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.55 E-value=4.3e-07 Score=92.53 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=94.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+|||+.|=||..++..| ..|+ +|++||+|..++++|++|++.|+.-.+++.++.+|..+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa--~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~---------------- 279 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAA--LGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK---------------- 279 (393)
T ss_pred CCeEEEecccCcHHHHHHH--hcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH----------------
Confidence 5689999999998875554 4566 99999999999999999999999335678999888542
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
++......+++||+|+..||=|....... +.
T Consensus 280 ------------------------------------~l~~~~~~g~~fDlIilDPPsF~r~k~~~------~~------- 310 (393)
T COG1092 280 ------------------------------------WLRKAERRGEKFDLIILDPPSFARSKKQE------FS------- 310 (393)
T ss_pred ------------------------------------HHHHHHhcCCcccEEEECCcccccCcccc------hh-------
Confidence 22223334679999999999886432211 11
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEE-EEEecCCCCHHHHHHHHH
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLR 318 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~-t~~vgk~~~l~~l~~~L~ 318 (384)
...-+..|+..+.+++.++|.+ ++-....-+.+.+++.+.
T Consensus 311 ----~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 311 ----AQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 1345788999999988887764 444444445555555443
No 130
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.55 E-value=1.8e-07 Score=95.17 Aligned_cols=58 Identities=14% Similarity=-0.031 Sum_probs=49.8
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+|||++||+|.+++.++.+....+|+++|+|+.|++.+++|++.|+ +. .+.++++|.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~Da 116 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKDA 116 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhhH
Confidence 57999999999999999877655589999999999999999999998 65 366776663
No 131
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=3.9e-06 Score=84.69 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=53.2
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH-----HHHCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN-----VKSNP 163 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N-----i~~n~ 163 (384)
.+...|-+.+........ ..+.+||+||||.|.....+.+..+..+|++||||+++++.|++. +....
T Consensus 131 ~DE~iYHE~Lvhp~m~~h-------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~ 203 (374)
T PRK01581 131 VDEQIYHEALVHPIMSKV-------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA 203 (374)
T ss_pred ccHHHHHHHHHHHHHHhC-------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc
Confidence 344455555555332211 245699999999998766666443456999999999999999962 11111
Q ss_pred CCCCceEEEEcCC
Q 016734 164 HISELIEIRKVDN 176 (384)
Q Consensus 164 ~l~~~I~~~~~d~ 176 (384)
.-..+++++.+|.
T Consensus 204 ~~DpRV~vvi~Da 216 (374)
T PRK01581 204 FFDNRVNVHVCDA 216 (374)
T ss_pred CCCCceEEEECcH
Confidence 0135788888874
No 132
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3e-07 Score=94.90 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=72.7
Q ss_pred CcEEEecCCCccCCCcC-HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 74 gl~~~vp~~~LiPrvP~-r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
|+.|.++++.+.=.-|. .+.++.|+.+.+... ...++||+=||.|.+++.||. ...+|+|+|++++|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~---------~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV 328 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELA---------GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAV 328 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhc---------CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHH
Confidence 67888888655543333 678889999988652 345899999999999999983 356899999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCC
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.|++|++.|+ +.+ +.+..++.
T Consensus 329 ~~A~~NA~~n~-i~N-~~f~~~~a 350 (432)
T COG2265 329 EAAQENAAANG-IDN-VEFIAGDA 350 (432)
T ss_pred HHHHHHHHHcC-CCc-EEEEeCCH
Confidence 99999999998 766 88887763
No 133
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.54 E-value=8.6e-07 Score=81.30 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=39.4
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.+...++.. .+..++|+|+++++++.|+. .+ ++++.+|.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~~-----~~~~~~d~ 64 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----RG-----VNVIQGDL 64 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----cC-----CeEEEEEh
Confidence 358999999999998777654 46788999999999988854 22 55666653
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.53 E-value=3e-07 Score=86.05 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=61.6
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
|+...++..+.... .+.+||+||||+|.-++.+|...+ +.+++.+|++++..+.|++|+++.+ +.+
T Consensus 31 ~~~g~lL~~l~~~~------------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~ 97 (205)
T PF01596_consen 31 PETGQLLQMLVRLT------------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDD 97 (205)
T ss_dssp HHHHHHHHHHHHHH------------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGG
T ss_pred HHHHHHHHHHHHhc------------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCC
Confidence 45555555555443 356999999999999999998776 6899999999999999999999998 899
Q ss_pred ceEEEEcCC
Q 016734 168 LIEIRKVDN 176 (384)
Q Consensus 168 ~I~~~~~d~ 176 (384)
+|+++.+|.
T Consensus 98 ~I~~~~gda 106 (205)
T PF01596_consen 98 RIEVIEGDA 106 (205)
T ss_dssp GEEEEES-H
T ss_pred cEEEEEecc
Confidence 999999874
No 135
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.50 E-value=3.4e-06 Score=83.83 Aligned_cols=135 Identities=14% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCCHHHHHhhCCCcccce-eccCCCCccccCC---CHHHHHHHHHHHhhccCCc---EEEecCCCccCCCcCHHHHHHHH
Q 016734 26 PPDFALLASLYPSFEPFV-FYSRDGRPRIDWT---DFNATRELTRVLLLHDHGL---NWWIPDGQLCPTVPNRSNYIHWI 98 (384)
Q Consensus 26 ~~df~~La~~~p~l~~~v-~~~~~g~~~idf~---~~~av~~Lt~alL~~~fgl---~~~vp~~~LiPrvP~r~~yi~~i 98 (384)
-+.+....++-|.+.+-- ..+. .++|.-. +....+.|... |+..++- .|.+ .++.+|. -.| ..+.|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-l~~l~p~~~~~~~l-~~~~~~~-e~~-s~~~~~ 111 (314)
T TIGR00452 38 FKQWSNAVEFLPEIKPYRLDLLM--LVCNDKSNPLSAGQIKRILEE-IMALMPWRKGPFEL-SGIKIDS-EWR-SDIKWD 111 (314)
T ss_pred HHHHHHHHHhcCCCCcCeeeccC--ccccCCCCCCCHHHHHHHHHH-HHhcCCCCCCCccc-ccccCCH-HHH-HHHHHH
Confidence 345666667777665432 2211 1233222 33445556543 4444432 3443 3566655 222 222222
Q ss_pred HHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 99 EDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 99 ~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
. ++... . .....+|||||||+|.+...++...+ ..|+|+|.++.++..++...+... ...++.+...+
T Consensus 112 ~-~l~~l--~----~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ 179 (314)
T TIGR00452 112 R-VLPHL--S----PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLG 179 (314)
T ss_pred H-HHHhc--C----CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECC
Confidence 1 11110 0 12346899999999998776665433 379999999999887644333222 22356666554
No 136
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.50 E-value=4.3e-07 Score=88.43 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|||||||.|.++..++.++ +++|+|+.+|++..+.|++.++..+ ++++++++..|..
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~ 122 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYR 122 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GG
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeecc
Confidence 35689999999999999998876 8999999999999999999999998 8999999998754
No 137
>PLN03075 nicotianamine synthase; Provisional
Probab=98.49 E-value=5e-07 Score=88.83 Aligned_cols=62 Identities=23% Similarity=0.154 Sum_probs=50.5
Q ss_pred CCCeEEEECCcccHHHHH-HH-hhccCCEEEEEeCcHHHHHHHHHHHHH-CCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPL-LG-ASLLGWSFVGSDMTDVALEWAEKNVKS-NPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~-La-~~~~~~~v~gvDid~~al~~A~~Ni~~-n~~l~~~I~~~~~d~~ 177 (384)
.+.+|+|||||.|-+..+ ++ ...++.+|+|+|+|+++++.|+++++. .+ +.++|+|..+|..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g-L~~rV~F~~~Da~ 187 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD-LSKRMFFHTADVM 187 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC-ccCCcEEEECchh
Confidence 467899999998854333 33 356889999999999999999999965 55 8889999998854
No 138
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.48 E-value=1.4e-06 Score=85.37 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=85.9
Q ss_pred CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCC-CceEEEEcCCCCCCCcccccccCCccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~-~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
..+|||+-|=+|..++..+ ..|+ +|+.||.|..|+++|++|++.|+ +. ++++++..|..+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa--~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~--------------- 185 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAA--AGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFK--------------- 185 (286)
T ss_dssp TCEEEEET-TTTHHHHHHH--HTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHH---------------
T ss_pred CCceEEecCCCCHHHHHHH--HCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH---------------
Confidence 4699999999998876544 3444 89999999999999999999998 65 689999887431
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
.+..+ ...++||+||+.||=|.... + .+
T Consensus 186 -------------------------------------~l~~~-~~~~~fD~IIlDPPsF~k~~---------~-----~~ 213 (286)
T PF10672_consen 186 -------------------------------------FLKRL-KKGGRFDLIILDPPSFAKSK---------F-----DL 213 (286)
T ss_dssp -------------------------------------HHHHH-HHTT-EEEEEE--SSEESST---------C-----EH
T ss_pred -------------------------------------HHHHH-hcCCCCCEEEECCCCCCCCH---------H-----HH
Confidence 11111 23468999999999774210 0 00
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeE-EEEEecCCCCHHHHHHHHHHcCC
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRW-YTSMVGRKSNLKFLISKLRKVGV 322 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w-~t~~vgk~~~l~~l~~~L~~~g~ 322 (384)
..=+.+|+..+..+++++|. +++-.+..-+.+.+++.+++.+-
T Consensus 214 ------~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~ 257 (286)
T PF10672_consen 214 ------ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR 257 (286)
T ss_dssp ------HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence 12366788889999888886 45555544456777777776653
No 139
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.46 E-value=1.2e-05 Score=74.73 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEc
Q 016734 95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174 (384)
Q Consensus 95 i~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~ 174 (384)
+.|+.+.+..... .....+|||+|||+|.+...++.. +..++|+|+++.+++.|++++..++ .. ++.+...
T Consensus 30 ~~~i~~~~~~~~~-----~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~-~~~~~~~ 100 (224)
T TIGR01983 30 LDYIRDTIRKNKK-----PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-LL-KIEYRCT 100 (224)
T ss_pred HHHHHHHHHhccc-----CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeC
Confidence 4566666653210 113568999999999988777654 4579999999999999999998876 32 4676665
Q ss_pred C
Q 016734 175 D 175 (384)
Q Consensus 175 d 175 (384)
+
T Consensus 101 d 101 (224)
T TIGR01983 101 S 101 (224)
T ss_pred C
Confidence 5
No 140
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.46 E-value=9e-07 Score=83.55 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
|++-.|+.++..+. ..++||+|||+.|.-++.+|...| +.+++.+|++++..+.|++|+++.+ +.+
T Consensus 45 ~e~g~~L~~L~~~~------------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~ 111 (219)
T COG4122 45 PETGALLRLLARLS------------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDD 111 (219)
T ss_pred hhHHHHHHHHHHhc------------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-Ccc
Confidence 88988888877654 356899999999999999998888 7799999999999999999999998 888
Q ss_pred ceEEEEc-CC
Q 016734 168 LIEIRKV-DN 176 (384)
Q Consensus 168 ~I~~~~~-d~ 176 (384)
+|.++.+ |.
T Consensus 112 ~i~~~~~gda 121 (219)
T COG4122 112 RIELLLGGDA 121 (219)
T ss_pred eEEEEecCcH
Confidence 9998884 53
No 141
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.46 E-value=2e-06 Score=83.17 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=42.5
Q ss_pred CCeEEEECCcccHHHHHHHhhcc---CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL---GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~---~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.+...|+...+ ++.++|+|+|+.+++.|+++. . .+.+..+|.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~----~~~~~~~d~ 142 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P----QVTFCVASS 142 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C----CCeEEEeec
Confidence 35799999999999888877655 358999999999999997652 1 366776663
No 142
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.46 E-value=1.1e-06 Score=87.53 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=50.4
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.++..++.... ...|+|+|+++++++.|++|++.++ + +++.++.+|.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~ 140 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDG 140 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCh
Confidence 45899999999999988887664 2479999999999999999999987 5 4688888764
No 143
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.46 E-value=9.1e-07 Score=89.09 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=62.6
Q ss_pred CcEEEecCCCccCCC-cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 74 GLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 74 gl~~~vp~~~LiPrv-P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
++.|.++++.+.=.- ...+.++.++.+++... +..+||+.||+|.+++.||... .+|+|||+++.|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~----------~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av 231 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLS----------KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAV 231 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-----------TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcC----------CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHH
Confidence 566777777665432 23566777787777531 2279999999999999998543 4899999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCC
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.|++|++.|+ +. +++++.++.
T Consensus 232 ~~A~~Na~~N~-i~-n~~f~~~~~ 253 (352)
T PF05958_consen 232 EDARENAKLNG-ID-NVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHTT----SEEEEE--S
T ss_pred HHHHHHHHHcC-CC-cceEEEeec
Confidence 99999999998 65 589988763
No 144
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.45 E-value=1.2e-06 Score=81.08 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=46.5
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
++.++||||||.|--++.||.+ |+.|+|+|+|+.+++.+++.++..+ ++ |+....|..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~-l~--i~~~~~Dl~ 87 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEG-LD--IRTRVADLN 87 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--T--EEEEE-BGC
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcC-ce--eEEEEecch
Confidence 4579999999999999999854 8899999999999999999888887 65 888887753
No 145
>PLN02476 O-methyltransferase
Probab=98.45 E-value=8.1e-07 Score=86.73 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=63.0
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
|+...++.++..+. ...+|||||||+|..++.+|...+ +-+++++|+++++++.|++|+++.+ +.+
T Consensus 104 ~~~g~lL~~L~~~~------------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~ 170 (278)
T PLN02476 104 PDQAQLLAMLVQIL------------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSH 170 (278)
T ss_pred HHHHHHHHHHHHhc------------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC
Confidence 56666666555543 346899999999999998887664 5589999999999999999999998 889
Q ss_pred ceEEEEcCCC
Q 016734 168 LIEIRKVDNS 177 (384)
Q Consensus 168 ~I~~~~~d~~ 177 (384)
+|+++.+|..
T Consensus 171 ~I~li~GdA~ 180 (278)
T PLN02476 171 KVNVKHGLAA 180 (278)
T ss_pred cEEEEEcCHH
Confidence 9999999854
No 146
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.44 E-value=9.4e-07 Score=82.42 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=74.3
Q ss_pred HHHHhhCCCcccceeccC--CCCccccCCCHHHHH----HHHHHHhhccCCcEE--EecCCCccCCC-cCHHHHHHHHHH
Q 016734 30 ALLASLYPSFEPFVFYSR--DGRPRIDWTDFNATR----ELTRVLLLHDHGLNW--WIPDGQLCPTV-PNRSNYIHWIED 100 (384)
Q Consensus 30 ~~La~~~p~l~~~v~~~~--~g~~~idf~~~~av~----~Lt~alL~~~fgl~~--~vp~~~LiPrv-P~r~~yi~~i~d 100 (384)
+.+.+++|..+.-+.+.. .|..+. +.-.- .-+. ......|+.| ++..-.+.|+. .||. .+.+
T Consensus 27 ~~i~~~~~~vktV~~k~~~v~g~~R~----~~~~~LaG~~~~~-t~~~E~G~~f~~D~~kvyfs~rl~~Er~----Ri~~ 97 (200)
T PF02475_consen 27 EAILEKNPNVKTVYNKIGIVEGEFRT----PDLEVLAGEPRTE-TIHKENGIRFKVDLSKVYFSPRLSTERR----RIAN 97 (200)
T ss_dssp HHHHHHC-T-SEEEEE-S-SBTTTTB------EEEEEES--SE-EEEEETTEEEEEETTTS---GGGHHHHH----HHHT
T ss_pred HHHHHhccCceEEEEecCcCCCCccc----ccEEEEeCCCceE-EEEEeCCEEEEEccceEEEccccHHHHH----HHHh
Confidence 456777777777665422 233222 11000 0000 1244577764 55666778883 2232 1222
Q ss_pred HhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 101 LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 101 ll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+. .....|+|+.||-|.+++.+|+......|+|+|++|.|+++.++|++.|+ ++++|.++++|.
T Consensus 98 ~v-----------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~ 161 (200)
T PF02475_consen 98 LV-----------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDA 161 (200)
T ss_dssp C-------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-G
T ss_pred cC-----------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCH
Confidence 21 13468999999999999998876677899999999999999999999998 899999999884
No 147
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.44 E-value=9.8e-06 Score=78.52 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=59.7
Q ss_pred CCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 73 fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al 152 (384)
||.-+.+....-.-. -....|.+.+..+..... ..+.+||+||||+|.+...++...+..+++++|+|++++
T Consensus 38 ~g~~l~ldg~~q~~~-~~e~~y~e~l~~~~l~~~-------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi 109 (270)
T TIGR00417 38 FGNVLVLDGVVQTTE-RDEFIYHEMIAHVPLFTH-------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI 109 (270)
T ss_pred CceEEEECCcccccC-chHHHHHHHhhhhHhhcC-------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH
Confidence 455444544333222 223456555554322111 234599999999999887776654467899999999999
Q ss_pred HHHHHHHHHCC-CC-CCceEEEEcC
Q 016734 153 EWAEKNVKSNP-HI-SELIEIRKVD 175 (384)
Q Consensus 153 ~~A~~Ni~~n~-~l-~~~I~~~~~d 175 (384)
+.|+++....+ .+ ..+++++.+|
T Consensus 110 ~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 110 ELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred HHHHHHhHhhcccccCCceEEEECc
Confidence 99999875432 11 2357776655
No 148
>PLN02366 spermidine synthase
Probab=98.42 E-value=2e-05 Score=78.13 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=66.1
Q ss_pred cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (384)
Q Consensus 72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a 151 (384)
.||.-+.+.....+-. ++...|-+.+..+..... ..+.+||+||||.|.+...+++..+..+|+.+|||+..
T Consensus 56 ~~g~~L~lDg~~q~~~-~de~~Y~e~l~h~~l~~~-------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~V 127 (308)
T PLN02366 56 TYGKVLVLDGVIQLTE-RDECAYQEMITHLPLCSI-------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMV 127 (308)
T ss_pred CCceEEEECCEeeecC-ccHHHHHHHHHHHHHhhC-------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHH
Confidence 4676666665554444 555566555554432211 24678999999999988777754234689999999999
Q ss_pred HHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734 152 LEWAEKNVKSNP-HI-SELIEIRKVDN 176 (384)
Q Consensus 152 l~~A~~Ni~~n~-~l-~~~I~~~~~d~ 176 (384)
++.|++.....+ .+ ..|++++.+|.
T Consensus 128 i~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 128 IDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred HHHHHHhhhhhccccCCCceEEEEChH
Confidence 999999875421 13 34899998874
No 149
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.40 E-value=3.1e-07 Score=88.17 Aligned_cols=52 Identities=29% Similarity=0.406 Sum_probs=43.2
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCce
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELI 169 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I 169 (384)
..+|||+|||.|.++.-||. .+++|+|+|+++++++.|++....+..++..|
T Consensus 90 g~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~ 141 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVANEHKKMDPVLEGAI 141 (282)
T ss_pred CceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHHHHhhhcCchhcccc
Confidence 35799999999999988884 46899999999999999999977776444433
No 150
>PRK05785 hypothetical protein; Provisional
Probab=98.37 E-value=2.1e-06 Score=81.18 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=36.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N 158 (384)
..+|||||||+|.++..++... +.+|+|+|+|++|++.|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence 4589999999999988888765 67999999999999999753
No 151
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.36 E-value=2.4e-06 Score=82.68 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=36.6
Q ss_pred CCCeEEEECCcccH----HHHHHHhhcc-----CCEEEEEeCcHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANC----IYPLLGASLL-----GWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 115 ~~~~vLDIGtGsG~----I~~~La~~~~-----~~~v~gvDid~~al~~A~~Ni 159 (384)
.+.+|+|+|||+|- |+.+|+...+ +++|+|+|+|+.|++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45799999999995 5555665543 579999999999999999865
No 152
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.36 E-value=3.6e-06 Score=87.43 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=43.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||||||+|.++..|+.. ..+++|+|+++.+++.|++ .++ ...++.++.+|.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~-~~~~i~~~~~d~ 92 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---ING-HYKNVKFMCADV 92 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhc-cCCceEEEEecc
Confidence 458999999999999888865 3589999999999987654 233 334688888874
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.2e-06 Score=77.72 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=51.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|||||||||.-+..|++.- + +|+.+|++++..+.|++|++..+ +.+ |.++++|..
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~-~-~V~siEr~~~L~~~A~~~L~~lg-~~n-V~v~~gDG~ 130 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV-G-RVVSIERIEELAEQARRNLETLG-YEN-VTVRHGDGS 130 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh-C-eEEEEEEcHHHHHHHHHHHHHcC-CCc-eEEEECCcc
Confidence 45689999999999888887543 3 99999999999999999999998 665 999999854
No 154
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.32 E-value=7.4e-08 Score=78.31 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=38.1
Q ss_pred EEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 120 LDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
||||||+|.+...+...++..+++|+|+|+.+++.|++.+....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 79999999999999888899999999999999999998888775
No 155
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.32 E-value=7.4e-06 Score=76.88 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=61.5
Q ss_pred CcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHH
Q 016734 74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVAL 152 (384)
Q Consensus 74 gl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al 152 (384)
+..+.+..+.-+.. |.. +.++.++|.- ....+|||||||||..+.+|+.... .-+|+++|+++..+
T Consensus 44 d~~l~i~~~~~is~-P~~---~a~~l~~L~l---------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~ 110 (209)
T PF01135_consen 44 DRPLPIGCGQTISA-PSM---VARMLEALDL---------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA 110 (209)
T ss_dssp SS-EEEETTEEE---HHH---HHHHHHHTTC----------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred CCCeeecceeechH-HHH---HHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH
Confidence 44566777777766 533 3344555542 2346999999999999988886643 34799999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEcCC
Q 016734 153 EWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 153 ~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
+.|++|++..+ +. +|.++.+|.
T Consensus 111 ~~A~~~l~~~~-~~-nv~~~~gdg 132 (209)
T PF01135_consen 111 ERARRNLARLG-ID-NVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHT-TH-SEEEEES-G
T ss_pred HHHHHHHHHhc-cC-ceeEEEcch
Confidence 99999999987 44 699998874
No 156
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=3.3e-06 Score=77.80 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=68.0
Q ss_pred CCcEEEecCC-CccCCCcC--HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 73 HGLNWWIPDG-QLCPTVPN--RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 73 fgl~~~vp~~-~LiPrvP~--r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
-|..+.+|++ .+=|+ .+ ||.+-.|+..- .-...++||+-+|||++++-.+++. ..+++.||.|.
T Consensus 10 kgr~L~~p~~~~~RPT-~drVREalFNil~~~-----------~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~ 76 (187)
T COG0742 10 KGRKLKTPDGPGTRPT-TDRVREALFNILAPD-----------EIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDR 76 (187)
T ss_pred cCCcccCCCCCCcCCC-chHHHHHHHHhcccc-----------ccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCH
Confidence 4666777775 66677 55 35444444421 0245699999999999998877653 34899999999
Q ss_pred HHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 150 VALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 150 ~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.++...++|++..+ ++.+..++..|.
T Consensus 77 ~a~~~l~~N~~~l~-~~~~~~~~~~da 102 (187)
T COG0742 77 KAVKILKENLKALG-LEGEARVLRNDA 102 (187)
T ss_pred HHHHHHHHHHHHhC-CccceEEEeecH
Confidence 99999999999987 778899888874
No 157
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.8e-06 Score=89.57 Aligned_cols=93 Identities=22% Similarity=0.142 Sum_probs=71.1
Q ss_pred hccCCcEEEecCCCccCCCcCH-HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 70 LHDHGLNWWIPDGQLCPTVPNR-SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 70 ~~~fgl~~~vp~~~LiPrvP~r-~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
.+.-|++|.|+++.+-=.--.. +-+-..|.|.+.. +....++|++||||.|++.+++. -.+|+|+|++
T Consensus 346 E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l---------~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~ 414 (534)
T KOG2187|consen 346 ESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGL---------PADKTLLDVCCGTGTIGLALARG--VKRVIGVEIS 414 (534)
T ss_pred eecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCC---------CCCcEEEEEeecCCceehhhhcc--ccceeeeecC
Confidence 4567899999999887652222 3334446666543 23468999999999999988854 3589999999
Q ss_pred HHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 149 DVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 149 ~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
++|++-|++|++.|+ ++ +.+|+.+.
T Consensus 415 ~~aV~dA~~nA~~Ng-is-Na~Fi~gq 439 (534)
T KOG2187|consen 415 PDAVEDAEKNAQING-IS-NATFIVGQ 439 (534)
T ss_pred hhhcchhhhcchhcC-cc-ceeeeecc
Confidence 999999999999998 66 47888773
No 158
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=2.1e-05 Score=78.68 Aligned_cols=142 Identities=17% Similarity=0.184 Sum_probs=97.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEc-CCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV-DNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~-d~~~~~p~~~~~~~~~~~~ 193 (384)
++..+||-=||||.|.+.. .+-|++++|+|||.++++-|+.|++..+ +++ ..++.. |...
T Consensus 197 ~G~~vlDPFcGTGgiLiEa--gl~G~~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~--------------- 257 (347)
T COG1041 197 RGELVLDPFCGTGGILIEA--GLMGARVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATN--------------- 257 (347)
T ss_pred cCCEeecCcCCccHHHHhh--hhcCceEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEeccccc---------------
Confidence 3458999999999985544 4679999999999999999999999887 554 444443 4321
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
..+ .+.+||.|+|-|||-.+.....
T Consensus 258 ---------------------------------------lpl--~~~~vdaIatDPPYGrst~~~~-------------- 282 (347)
T COG1041 258 ---------------------------------------LPL--RDNSVDAIATDPPYGRSTKIKG-------------- 282 (347)
T ss_pred ---------------------------------------CCC--CCCccceEEecCCCCccccccc--------------
Confidence 001 2347999999999987643211
Q ss_pred cccCch-HHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEee-CCCeeEEE
Q 016734 274 VCSGGE-RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV-QGQTCRWG 339 (384)
Q Consensus 274 ~~~GGe-l~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~-qG~t~Rw~ 339 (384)
++ -..+.+.++.+...++.+||+.+-.. ..-...+.+.|++.+..+... +|.-+|-+
T Consensus 283 ----~~l~~Ly~~~le~~~evLk~gG~~vf~~p-----~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i 341 (347)
T COG1041 283 ----EGLDELYEEALESASEVLKPGGRIVFAAP-----RDPRHELEELGFKVLGRFTMRVHGSLTRVI 341 (347)
T ss_pred ----ccHHHHHHHHHHHHHHHhhcCcEEEEecC-----CcchhhHhhcCceEEEEEEEeecCceEEEE
Confidence 11 35788888888888999998754443 233445667888766665443 34345543
No 159
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.26 E-value=3.1e-05 Score=76.24 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|||+|||+|.....|+...+ +.+++|+|+|++||+.|++++.... -.-+|.++.+|..
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~ 125 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFT 125 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEccc
Confidence 45899999999999988888776 6899999999999999999987642 1235777888753
No 160
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.21 E-value=5.6e-06 Score=79.64 Aligned_cols=76 Identities=11% Similarity=0.176 Sum_probs=63.2
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~ 167 (384)
|+...++..+.... ...+||+|||++|.-++.+|...+ +.+++.+|++++..+.|++|++..+ +.+
T Consensus 65 ~~~g~lL~~l~~~~------------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~ 131 (247)
T PLN02589 65 ADEGQFLNMLLKLI------------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAH 131 (247)
T ss_pred HHHHHHHHHHHHHh------------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCC
Confidence 66766666665543 346899999999998888887654 6799999999999999999999998 889
Q ss_pred ceEEEEcCCC
Q 016734 168 LIEIRKVDNS 177 (384)
Q Consensus 168 ~I~~~~~d~~ 177 (384)
+|+++.++..
T Consensus 132 ~I~~~~G~a~ 141 (247)
T PLN02589 132 KIDFREGPAL 141 (247)
T ss_pred ceEEEeccHH
Confidence 9999999754
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.18 E-value=5.1e-06 Score=78.81 Aligned_cols=140 Identities=24% Similarity=0.214 Sum_probs=96.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
+..+|||-|+|-|..++..+ ..++ .|+-+|.||..|++|..|=-..+..+..|+++.+|.-+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~--~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--------------- 196 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEAL--ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--------------- 196 (287)
T ss_pred cCCEeeeeccCccHHHHHHH--HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---------------
Confidence 46799999999998765544 3466 99999999999999999866555344568888887432
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
+...+ .+++||+|+--||=|+-.. |+
T Consensus 197 -------------------------------------~V~~~--~D~sfDaIiHDPPRfS~Ag---------------eL 222 (287)
T COG2521 197 -------------------------------------VVKDF--DDESFDAIIHDPPRFSLAG---------------EL 222 (287)
T ss_pred -------------------------------------HHhcC--CccccceEeeCCCccchhh---------------hH
Confidence 11122 4788999999999886421 11
Q ss_pred cccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC-------CHHHHHHHHHHcCCeEEEEEEeeCC
Q 016734 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-------NLKFLISKLRKVGVTIVKTTEFVQG 333 (384)
Q Consensus 274 ~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~-------~l~~l~~~L~~~g~~~v~~~e~~qG 333 (384)
. .+.|++.| .++++++|-+.--+|... -...+.+.|++.||..+...+-.-|
T Consensus 223 Y----seefY~El----~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g 281 (287)
T COG2521 223 Y----SEEFYREL----YRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALG 281 (287)
T ss_pred h----HHHHHHHH----HHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccc
Confidence 1 24566654 455666664444555333 2477889999999998887765444
No 162
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.16 E-value=4.6e-06 Score=77.07 Aligned_cols=147 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~ 195 (384)
..+|||+|||.|.+...|.. ..+.+.+|+|+|++.+..|.+ +| +.++++|..+.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~-~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld~g---------------- 67 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKD-EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLDEG---------------- 67 (193)
T ss_pred CCEEEecCCCchHHHHHHHH-hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHHHh----------------
Confidence 45899999999998766654 468999999999998776643 34 66888885420
Q ss_pred cccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccc
Q 016734 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~ 275 (384)
+..+ ++++||+||++= +.+. -.+|... -.||+.
T Consensus 68 ------------------------------------L~~f--~d~sFD~VIlsq----tLQ~-~~~P~~v----L~EmlR 100 (193)
T PF07021_consen 68 ------------------------------------LADF--PDQSFDYVILSQ----TLQA-VRRPDEV----LEEMLR 100 (193)
T ss_pred ------------------------------------HhhC--CCCCccEEehHh----HHHh-HhHHHHH----HHHHHH
Confidence 1112 478999999872 2222 1234332 235555
Q ss_pred cCch-------HHHHHHHHHHHHHhh--------ccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeE
Q 016734 276 SGGE-------RAFITRIIEDSVALK--------QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCR 337 (384)
Q Consensus 276 ~GGe-------l~Fv~~ii~eS~~l~--------~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~R 337 (384)
.|.+ .++.+.-+.- .+. -+-.||-+=-=+..++.+...+.++.|+...+..-+-.++..+
T Consensus 101 Vgr~~IVsFPNFg~W~~R~~l--~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~~~~ 175 (193)
T PF07021_consen 101 VGRRAIVSFPNFGHWRNRLQL--LLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGRRSR 175 (193)
T ss_pred hcCeEEEEecChHHHHHHHHH--HhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCCCcc
Confidence 5544 2333321111 111 1346885433337789999999999999866666555554333
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.16 E-value=4.9e-06 Score=75.52 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=40.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC-CCCCceEEEEcC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~-~l~~~I~~~~~d 175 (384)
...+|||||||+|..++.++......+|+.+|.++ +++..+.|++.|+ ....++.+..-+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~ 105 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLD 105 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEE
Confidence 56799999999999998888765678999999999 9999999999985 123456665544
No 164
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.15 E-value=7.8e-06 Score=81.45 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=51.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
+.+.|||+|||+|.++...|+.. ..+|+|||-+.-| +.|.+.+..|+ +++.|+++++.+-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvE 119 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVE 119 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceE
Confidence 45689999999999887666554 5589999999877 99999999998 9999999998753
No 165
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.14 E-value=3.9e-05 Score=73.74 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=51.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC------CEEEEEeCcHHHHHHHHHHHHHCCCCCCc--eEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG------WSFVGSDMTDVALEWAEKNVKSNPHISEL--IEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~------~~v~gvDid~~al~~A~~Ni~~n~~l~~~--I~~~~~d~ 176 (384)
...++||+|||||-|+..+...... .+|+.+||++.+|+.+++-+++-+ +.+. +.++.+|.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDA 168 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCc
Confidence 4579999999999999888776554 799999999999999999998766 6544 88887763
No 166
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.08 E-value=6.6e-06 Score=77.28 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|.|||||.|.-..+|++++|++.++|+|-|++|++.|+.- +. ..+|..+|+.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r------lp-~~~f~~aDl~~ 86 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR------LP-DATFEEADLRT 86 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh------CC-CCceecccHhh
Confidence 46789999999999999999999999999999999999999543 22 36777777654
No 167
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.05 E-value=2.1e-05 Score=73.00 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=44.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.-.++||+|||.|.+...|+.+. -+++++|+++.|++.|++.+... .+|++++.++.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp 99 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL----PHVEWIQADVP 99 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TT
T ss_pred ccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCC
Confidence 34689999999999999998775 38999999999999999988643 26999998753
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.03 E-value=2e-05 Score=81.99 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=47.8
Q ss_pred CCeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...|+|+|||+|.+....++.. ...+|+|||.++.|+...++.++.|+ ++++|+++++|..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMR 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCccc
Confidence 4689999999998875443322 24699999999999988888888897 9999999999864
No 169
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.03 E-value=1.2e-05 Score=81.68 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+.||||..++.++.+.++ .+|+++|+|+.|++.+++|++.|+ +. .+.++++|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~-~~~v~~~Da 104 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-VE-NIEVPNEDA 104 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-cEEEEchhH
Confidence 468999999999999999987654 489999999999999999999997 54 477777763
No 170
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.02 E-value=1.8e-05 Score=68.29 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=51.5
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.+||+|||.|.++..++...++++++++|.++.+++.+++|++.|+ +. ++.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeeee
Confidence 3899999999999988888888899999999999999999999997 65 4888887654
No 171
>PTZ00146 fibrillarin; Provisional
Probab=98.02 E-value=0.0004 Score=68.38 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=40.8
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+|||+|||+|.....++.... .-.|+|+|+++++++...+-++.. .+|.++.+|.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da 190 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA 190 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence 45899999999999888887653 348999999998765444433221 1367777764
No 172
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.02 E-value=1.6e-05 Score=78.86 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=49.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
....|||+|||||+++...++. -..+|+|||.++ +.++|++-++.|+ +.+||.++.+.+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~-~~~rItVI~GKiE 236 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNN-LADRITVIPGKIE 236 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCC-ccceEEEccCccc
Confidence 4568999999999887555543 345899999985 6799999999996 9999999988753
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=3.3e-05 Score=74.73 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=47.4
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...||+||+|.|++...|+++ +.+|+|+|+|+..+...++... ..++++++++|...
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk 87 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALK 87 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhc
Confidence 568999999999999888865 4579999999999998888765 23479999999653
No 174
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.99 E-value=2.1e-05 Score=75.01 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=44.1
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
..+..+|||||-+|.+.+.+|+.+-...++|+|||+..+..|++|++.-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3567899999999999999999887778999999999999999998743
No 175
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.93 E-value=3.3e-05 Score=72.80 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=35.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
...-|||||||||.-+..|. .++...+|+|||+.||+.|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~--~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS--DSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheec--cCCceEEeecCCHHHHHHHHH
Confidence 56789999999998776665 356789999999999999987
No 176
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=6.3e-05 Score=70.95 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=34.9
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~ 156 (384)
..+|||+|||.|.-+..||. .+++|+|+|+++.|++.|.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHH
Confidence 46999999999999888885 5899999999999999874
No 177
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.91 E-value=0.00011 Score=68.85 Aligned_cols=58 Identities=24% Similarity=0.180 Sum_probs=50.3
Q ss_pred EEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
|.||||-.|.+++.|.++..--+++|+||++..++.|++|++.++ +.++|+++.+|..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL 58 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGL 58 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcc
Confidence 689999999999999987666689999999999999999999998 9999999999853
No 178
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.90 E-value=6.9e-05 Score=65.06 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=32.5
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~ 154 (384)
...+|||||||.|.+...++.. +.+++|+|+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh
Confidence 4679999999999988877544 4599999999999988
No 179
>PLN02823 spermine synthase
Probab=97.87 E-value=0.0012 Score=66.44 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred cCCcEEEecCCCc-cCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734 72 DHGLNWWIPDGQL-CPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (384)
Q Consensus 72 ~fgl~~~vp~~~L-iPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~ 150 (384)
.||.-+.+..... +. .....|-+.+........ ..+.+||.||+|.|.++..+.+..+..+++.||||++
T Consensus 68 ~~g~~L~lDg~~qs~~--~de~~YhE~l~h~~l~~~-------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~ 138 (336)
T PLN02823 68 PFGKVLIIDGKMQSAE--ADEFVYHESLVHPALLHH-------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE 138 (336)
T ss_pred CCceEEEECCcccccc--chHHHHHHHHHhHHHhhC-------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH
Confidence 3565555543322 22 233456665554322211 2456899999999998876665444568999999999
Q ss_pred HHHHHHHHHHHCC-CC-CCceEEEEcCC
Q 016734 151 ALEWAEKNVKSNP-HI-SELIEIRKVDN 176 (384)
Q Consensus 151 al~~A~~Ni~~n~-~l-~~~I~~~~~d~ 176 (384)
.++.|++....++ .+ ..+++++.+|.
T Consensus 139 vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 139 VVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred HHHHHHHhcccccccccCCceEEEEChh
Confidence 9999999875432 01 35888888874
No 180
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.87 E-value=8.9e-05 Score=68.77 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=50.3
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.+||||||.|-..+.+|...|+..++|+|+....+..|...+...+ +. ++.++.+|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l~-Nv~~~~~da~ 77 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-LK-NVRFLRGDAR 77 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-TS-SEEEEES-CT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-cc-ceEEEEccHH
Confidence 8999999999999999999999999999999999999999998886 64 6999998753
No 181
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.86 E-value=0.00013 Score=76.67 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=44.4
Q ss_pred CeEEEECCcccHHHHHHHhhcc----CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~----~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+|+|.+||||.+....+.... ...++|.|+++..++.|+.|.--++ +...+.+.++|.
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~dt 250 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGDT 250 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCcccccccccc
Confidence 4899999999987655444321 3679999999999999999999887 543345555553
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.83 E-value=0.00089 Score=61.74 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734 91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (384)
Q Consensus 91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~ 170 (384)
.+.+..++.|-+.... .. .....+++|||||.|.=++.||-.+|..+|+.+|-...=+..-+.-+...+ |+ +++
T Consensus 28 ~~~~~~Hi~DSL~~~~--~~--~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~-nv~ 101 (184)
T PF02527_consen 28 EEIWERHILDSLALLP--FL--PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LS-NVE 101 (184)
T ss_dssp HHHHHHHHHHHHGGGG--CS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--S-SEE
T ss_pred HHHHHHHHHHHHHhhh--hh--ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CC-CEE
Confidence 3455567777665421 11 112227999999999988888888999999999999999999998888887 76 589
Q ss_pred EEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCC
Q 016734 171 IRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250 (384)
Q Consensus 171 ~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPP 250 (384)
++++...+ ....++||+|+|=
T Consensus 102 v~~~R~E~---------------------------------------------------------~~~~~~fd~v~aR-- 122 (184)
T PF02527_consen 102 VINGRAEE---------------------------------------------------------PEYRESFDVVTAR-- 122 (184)
T ss_dssp EEES-HHH---------------------------------------------------------TTTTT-EEEEEEE--
T ss_pred EEEeeecc---------------------------------------------------------cccCCCccEEEee--
Confidence 88775210 0125789988763
Q ss_pred cccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCC--CHHHHHHHHHHcCCeEEEEE
Q 016734 251 FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTT 328 (384)
Q Consensus 251 y~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~--~l~~l~~~L~~~g~~~v~~~ 328 (384)
++ +-+..+++-+..+.+.+|.+.++-|+.. .+++....++..+.....+.
T Consensus 123 --------------Av--------------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 123 --------------AV--------------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp --------------SS--------------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred --------------hh--------------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 11 1144556667778888888889999532 24555666777888777777
Q ss_pred EeeCC
Q 016734 329 EFVQG 333 (384)
Q Consensus 329 e~~qG 333 (384)
++...
T Consensus 175 ~~~~~ 179 (184)
T PF02527_consen 175 EFELP 179 (184)
T ss_dssp EEE-T
T ss_pred cccCC
Confidence 77544
No 183
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.82 E-value=0.00011 Score=70.97 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (384)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~ 171 (384)
.++++.|.+.+.. .....|||||.|.|.+...|+... .+++++|+|+..++..++....+ +++++
T Consensus 16 ~~~~~~Iv~~~~~---------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~----~~~~v 80 (262)
T PF00398_consen 16 PNIADKIVDALDL---------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASN----PNVEV 80 (262)
T ss_dssp HHHHHHHHHHHTC---------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTC----SSEEE
T ss_pred HHHHHHHHHhcCC---------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhc----cccee
Confidence 3566677776643 245689999999999999998665 79999999999999988876533 47999
Q ss_pred EEcCCCC
Q 016734 172 RKVDNSE 178 (384)
Q Consensus 172 ~~~d~~~ 178 (384)
+++|..+
T Consensus 81 i~~D~l~ 87 (262)
T PF00398_consen 81 INGDFLK 87 (262)
T ss_dssp EES-TTT
T ss_pred eecchhc
Confidence 9998653
No 184
>PRK04148 hypothetical protein; Provisional
Probab=97.80 E-value=7.1e-05 Score=65.61 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=40.8
Q ss_pred CCCeEEEECCcccH-HHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~-I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
+..++||||||+|. ++..|++ .+..|+|+|+++.+++.|+++ + +.++.+|..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLF 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCC
Confidence 34689999999995 7777763 478999999999998887665 2 567777754
No 185
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.77 E-value=8.3e-05 Score=69.91 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=44.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC----------CCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP----------HISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~----------~l~~~I~~~~~d~~~ 178 (384)
..+|||+|||.|.-+..||. .|++|+|+|+|+.|++.|........ .-..+|+++.+|..+
T Consensus 35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence 45999999999999888885 48999999999999998633111000 002358888888653
No 186
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.74 E-value=0.00011 Score=71.26 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
....||++|-|+|.+...|.. .+.+|+|+|+|+.++..-.+-++... .+.+.+++++|..
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFL 117 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccc
Confidence 456899999999999877764 46799999999999999999888776 6788999999854
No 187
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.001 Score=64.58 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=75.6
Q ss_pred HhhccCCcEEEecCC----CccCCCcCHHHH-------------HHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHH
Q 016734 68 LLLHDHGLNWWIPDG----QLCPTVPNRSNY-------------IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130 (384)
Q Consensus 68 lL~~~fgl~~~vp~~----~LiPrvP~r~~y-------------i~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~ 130 (384)
|.=.+||-.+....| +|-|+ |+-+.. |..|...|.. ....+||+-|||||.++
T Consensus 51 iIGK~~G~~v~sskG~~vylL~PT-pELWTl~LphRTQI~Yt~Dia~I~~~L~i---------~PGsvV~EsGTGSGSlS 120 (314)
T KOG2915|consen 51 IIGKPYGSKVASSKGKFVYLLQPT-PELWTLALPHRTQILYTPDIAMILSMLEI---------RPGSVVLESGTGSGSLS 120 (314)
T ss_pred eecCCccceeeecCCcEEEEecCC-hHHhhhhccCcceEEecccHHHHHHHhcC---------CCCCEEEecCCCcchHH
Confidence 345578888888888 56677 643221 2233333332 13458999999999999
Q ss_pred HHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 131 PLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 131 ~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+++... |--+++-.|+...-.+.|.+-.+..+ +.+.+++.+.|+..
T Consensus 121 haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 121 HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeeccc
Confidence 9888764 55689999999999999999999998 99999999999764
No 188
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.65 E-value=0.0012 Score=62.39 Aligned_cols=120 Identities=20% Similarity=0.170 Sum_probs=91.5
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccccc
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (384)
..+.||||-.+.++..|.+..+...++++|+++-.++.|.+|+++++ +.++|+++.+|...
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~------------------ 78 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA------------------ 78 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc------------------
Confidence 34999999999999999888888899999999999999999999998 99999999988542
Q ss_pred ccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccccc
Q 016734 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (384)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~ 276 (384)
. +..++.+|+|+-- +.
T Consensus 79 -------------------------------------~-l~~~d~~d~ivIA----------GM---------------- 94 (226)
T COG2384 79 -------------------------------------V-LELEDEIDVIVIA----------GM---------------- 94 (226)
T ss_pred -------------------------------------c-cCccCCcCEEEEe----------CC----------------
Confidence 0 1123345544321 10
Q ss_pred CchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCe
Q 016734 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (384)
Q Consensus 277 GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~ 323 (384)
+=..+..|+++-...++.. .-..+---.+...|.+.|.+.++.
T Consensus 95 --GG~lI~~ILee~~~~l~~~--~rlILQPn~~~~~LR~~L~~~~~~ 137 (226)
T COG2384 95 --GGTLIREILEEGKEKLKGV--ERLILQPNIHTYELREWLSANSYE 137 (226)
T ss_pred --cHHHHHHHHHHhhhhhcCc--ceEEECCCCCHHHHHHHHHhCCce
Confidence 1235788888887766655 234555578899999999999985
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.63 E-value=0.00019 Score=70.85 Aligned_cols=59 Identities=14% Similarity=-0.054 Sum_probs=50.4
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+||.+||.|.-+..++...+ +.+|+|+|+|++|++.|++.+.. .+++.+++++..+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~ 79 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSN 79 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHH
Confidence 45899999999999999988875 67999999999999999988754 2579999988653
No 190
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00038 Score=69.86 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=52.9
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
+..|+|+=+|-|.+++.+|.... .+|+|+||+|+|+++.++|++.|+ ++++|..+++|..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~r 248 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAR 248 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHH
Confidence 56899999999999988876533 349999999999999999999998 8999999999864
No 191
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.44 E-value=0.00017 Score=71.18 Aligned_cols=42 Identities=17% Similarity=0.027 Sum_probs=31.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
+..+|||||||+|.....++.+.+ ..|+|+|-++..+...+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHH
Confidence 567999999999988767665432 379999998877665443
No 192
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.39 E-value=0.0015 Score=61.28 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=45.1
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE-EEEcCC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE-IRKVDN 176 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~-~~~~d~ 176 (384)
..++.+|++|||+|.-...+- -.|+.+|+++|-++.+-+.|.+.++.+.. .++. ++.++.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~g 135 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADG 135 (252)
T ss_pred cCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeech
Confidence 356678999999998643321 12678999999999999999999998853 2355 777763
No 193
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.00082 Score=58.81 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=42.7
Q ss_pred CCCeEEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
....|+|+|||-|.++..|+.. .++.+|+|+|.++..++.|.+..+..+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 5678999999999999999872 278999999999999999998887654
No 194
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.30 E-value=0.0032 Score=59.83 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHhhccCCcE--EEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHH
Q 016734 56 TDFNATRELTRVLLLHDHGLN--WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133 (384)
Q Consensus 56 ~~~~av~~Lt~alL~~~fgl~--~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~L 133 (384)
..++.+++|.++.+.+. +.. +.++ |+-..++.-+..++ .+.++||||+=+|.=+++.
T Consensus 33 ~e~~~l~el~e~t~~~~-~~~~~m~v~--------~d~g~fl~~li~~~------------~ak~~lelGvfTGySaL~~ 91 (237)
T KOG1663|consen 33 REPELLKELREATLTYP-QPGSEMLVG--------PDKGQFLQMLIRLL------------NAKRTLELGVFTGYSALAV 91 (237)
T ss_pred CCcHHHHHHHHHHhhcC-CcccceecC--------hHHHHHHHHHHHHh------------CCceEEEEecccCHHHHHH
Confidence 45788899999887654 322 2222 45555555555554 3468999998777665566
Q ss_pred Hhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 134 GASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 134 a~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
|...| +-+++++|||+++++.+.+-++..+ ..++|++++++..+
T Consensus 92 Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 92 ALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALE 136 (237)
T ss_pred HHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhh
Confidence 66666 5699999999999999999999998 88999999997543
No 195
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.29 E-value=0.00033 Score=66.92 Aligned_cols=58 Identities=21% Similarity=0.444 Sum_probs=41.6
Q ss_pred CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N 158 (384)
|.-| ..|+.++.... .....++|+|||+|.-+..++.. +. +|+|+|+++++|+.|++.
T Consensus 17 P~YP-----tdw~~~ia~~~--------~~h~~a~DvG~G~Gqa~~~iae~-~k-~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 17 PSYP-----TDWFKKIASRT--------EGHRLAWDVGTGNGQAARGIAEH-YK-EVIATDVSEAMLKVAKKH 74 (261)
T ss_pred CCCc-----HHHHHHHHhhC--------CCcceEEEeccCCCcchHHHHHh-hh-hheeecCCHHHHHHhhcC
Confidence 5556 56777766542 12338999999999655555544 43 799999999999988653
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.29 E-value=0.00079 Score=64.08 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=52.9
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+||||||.|-..+.+|.+.|.+.++|+|+....+..|..-+.+.+ +. +|.++..|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA 107 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDA 107 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCH
Confidence 47999999999999999999999999999999999999999999887 65 688888874
No 197
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.23 E-value=0.00018 Score=67.80 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=50.7
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...|+|.-||.|.-.+..+.+ +..|+++||||.-+.+|++|++--| +.+||+|+++|.++
T Consensus 95 ~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld 154 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLD 154 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHH
Confidence 346888888888776677755 4589999999999999999999999 88999999999653
No 198
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.23 E-value=0.0024 Score=64.12 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCCeEEEECCcccH-HHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 115 ~~~~vLDIGtGsG~-I~~~La~~~~~~~v~gvDid~~al~~A~~Ni 159 (384)
...+|||||||-|. +.-... ..-..++|+||+.++++.|++-.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHH
Confidence 56799999999776 332222 22348999999999999999877
No 199
>PRK10742 putative methyltransferase; Provisional
Probab=97.19 E-value=0.0016 Score=62.66 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=47.8
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC------CC-CCCceEEEEcCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN------PH-ISELIEIRKVDN 176 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n------~~-l~~~I~~~~~d~ 176 (384)
.+|||+-+|+|..+..++.+ +++|+++|.++.+....+.|+++. +. +..+++++++|.
T Consensus 90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 38999999999999998865 778999999999999999999873 11 224688887763
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.17 E-value=0.0033 Score=65.92 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=94.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
...+|||+|+|.|.=...+|..+.+ -.++|.|+++.-++..++|+++.+ +. .|.+...|...
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~~-nv~v~~~D~~~--------------- 175 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-VS-NVALTHFDGRV--------------- 175 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCchhh---------------
Confidence 4468999999999999899887643 489999999999999999999998 54 47776665321
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
+... ..+.||.|++-+|=--..-- ..+|.....-+...+
T Consensus 176 --------------------------------------~~~~--~~~~fD~ILvDaPCSG~G~~-rk~p~~~~~~s~~~v 214 (470)
T PRK11933 176 --------------------------------------FGAA--LPETFDAILLDAPCSGEGTV-RKDPDALKNWSPESN 214 (470)
T ss_pred --------------------------------------hhhh--chhhcCeEEEcCCCCCCccc-ccCHHHhhhCCHHHH
Confidence 0000 13569999999985432211 112322111011000
Q ss_pred cccCch-HHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734 274 VCSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 274 ~~~GGe-l~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g 321 (384)
-+ ...=.+|++.+..+++.+|.+ ||-+...++-.-+...|++++
T Consensus 215 ----~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 215 ----LEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 01 233456888888888888865 455665556666666777764
No 201
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.00087 Score=62.29 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=45.7
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
+.++|||+|+|||..+++.+.. -...|+++|++|......+.|++.|+ . .|.+...|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-v--~i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-V--SILFTHAD 135 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-c--eeEEeecc
Confidence 5679999999999887655432 23478999999999999999999998 3 37777665
No 202
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.05 E-value=0.002 Score=61.95 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=73.4
Q ss_pred CCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhccCCcEEEecCCCccCCCcCHHHHHHHHHHHhc
Q 016734 24 ENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLS 103 (384)
Q Consensus 24 ~~~~df~~La~~~p~l~~~v~~~~~g~~~idf~~~~av~~Lt~alL~~~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~ 103 (384)
..+||.++|.++. .+ ..+..|+++++...+.+|...... -||+..++.+.+.+-
T Consensus 47 ~~~p~~~~ll~~l---~~----------a~~~~D~e~~~~~~r~lL~~HaST-------------~ERl~~Ld~fY~~if 100 (251)
T PF07091_consen 47 EGRPDYDALLRKL---QE----------ALDVGDPEAIRAWCRRLLAGHAST-------------RERLPNLDEFYDEIF 100 (251)
T ss_dssp SS---HHHHHHHH---HH----------HHCTTHHHHHHHHHHHHHHTSHHH-------------HCCGGGHHHHHHHHC
T ss_pred cCCCCHHHHHHHH---Hh----------ccCcCCHHHHHHHHHHHHhhccch-------------hhhhhhHHHHHHHHH
Confidence 4577777777662 22 366789999988888777443221 233333444444332
Q ss_pred cCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 104 SNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 104 ~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.. + ..+.+|+|||||-.-+++-.....++..++|+|||..+++.-..-+...+ .. .++...|..
T Consensus 101 ~~-~------~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~--~~~~v~Dl~ 164 (251)
T PF07091_consen 101 GR-I------PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VP--HDARVRDLL 164 (251)
T ss_dssp CC-S---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--C--EEEEEE-TT
T ss_pred hc-C------CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CC--cceeEeeee
Confidence 21 1 23569999999999887766656678899999999999999988887775 43 555556654
No 203
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.03 E-value=0.0016 Score=61.40 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=37.2
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHH
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~ 160 (384)
..+..+-|-|||+|.+...|+.-..+ ..|+|.|||++++++|++|+.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 46789999999999998888765443 479999999999999999985
No 204
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.99 E-value=0.001 Score=61.60 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=48.0
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..+.|+|+|||.++...+.. .-+|+|+|.||.-.++|.+|+.-++ + +.++++.+|..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-~-~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-D-VNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-C-cceEEEeccccc
Confidence 57999999999887655533 4589999999999999999998776 4 469999999764
No 205
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.98 E-value=0.0037 Score=59.48 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=35.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
..+||+.|||.|.-...||. .|++|+|+|+|+.|++.+.+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHH
Confidence 46999999999998888875 47789999999999999855
No 206
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.95 E-value=0.0035 Score=59.21 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=34.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~ 156 (384)
...+||..|||.|.-...||.+ |.+|+|+|+++.|++.|.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHH
Confidence 3468999999999998888864 789999999999999983
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.95 E-value=0.019 Score=55.10 Aligned_cols=62 Identities=16% Similarity=-0.014 Sum_probs=45.5
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC--CCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~--~l~~~I~~~~~d~ 176 (384)
++.+||=||-|.|.+.-.+.+..+..+++.||||+..++.|++-..... .-..|++++.+|.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 4679999999999887777644445699999999999999998765321 1235899988873
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.017 Score=54.57 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCC-CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCce
Q 016734 91 RSNYIHWIEDLLSSNIIPTTSRNGD-KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELI 169 (384)
Q Consensus 91 r~~yi~~i~dll~~~~~~~~~~~~~-~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I 169 (384)
-+.|.+++.|.+..... ... ..+++|||+|+|.=++-||-.+|+.+|+-+|-...-+..-+.-++..+ |+ ++
T Consensus 47 ~e~~~rHilDSl~~~~~-----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~-nv 119 (215)
T COG0357 47 EELWQRHILDSLVLLPY-----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LE-NV 119 (215)
T ss_pred HHHHHHHHHHHhhhhhc-----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CC-Ce
Confidence 46788888887764321 112 579999999999888888878899999999999999888888888887 65 48
Q ss_pred EEEEcC
Q 016734 170 EIRKVD 175 (384)
Q Consensus 170 ~~~~~d 175 (384)
+++++.
T Consensus 120 ~i~~~R 125 (215)
T COG0357 120 EIVHGR 125 (215)
T ss_pred EEehhh
Confidence 888765
No 209
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.89 E-value=0.024 Score=54.43 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+.+||=+|=+ =.+++++|......+|+-+|||+..++.-++.+++.+ +. |+.++.|..+
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l~--i~~~~~DlR~ 103 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-LP--IEAVHYDLRD 103 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-Cc--eEEEEecccc
Confidence 45689999855 4577777776677899999999999999999999998 65 9999998754
No 210
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.032 Score=56.48 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV 192 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~ 192 (384)
...+|||+|++.|.=...+++...+ ..|+|+|+|+.-++..++|+++.| +.+ +.++..|...
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~n-v~~~~~d~~~-------------- 219 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VRN-VIVVNKDARR-------------- 219 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CCc-eEEEeccccc--------------
Confidence 4579999999999887788877654 678999999999999999999998 665 6666665321
Q ss_pred ccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccc
Q 016734 193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE 272 (384)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E 272 (384)
+.......++||-|++-||=-.+... ..+|..-..-+...
T Consensus 220 ---------------------------------------~~~~~~~~~~fD~iLlDaPCSg~G~i-rr~Pd~~~~~~~~~ 259 (355)
T COG0144 220 ---------------------------------------LAELLPGGEKFDRILLDAPCSGTGVI-RRDPDVKWRRTPED 259 (355)
T ss_pred ---------------------------------------ccccccccCcCcEEEECCCCCCCccc-ccCccccccCCHHH
Confidence 00000123469999999997654332 22444322211111
Q ss_pred ccccCchHHHHHHHHHHHHHhhccCeEE---EEEecCCCCHHHHHHHHHHcC
Q 016734 273 MVCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (384)
Q Consensus 273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~---t~~vgk~~~l~~l~~~L~~~g 321 (384)
+ ..-..+=.+|++.+..+++.+|.+ ||-+-..++-+-+...|++..
T Consensus 260 i---~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 260 I---AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred H---HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 0 001344556888888888887754 466666777787888888763
No 211
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.72 E-value=0.0045 Score=58.49 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|+|||.|+|.++..++.++|+++++..|. |..++.|++ .+||+++.+|..+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~ 154 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD 154 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh
Confidence 345899999999999999999999999999999 888888888 3589999999764
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.65 E-value=0.0039 Score=61.38 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=34.8
Q ss_pred CCCeEEEECCccc----HHHHHHHhhcc----CCEEEEEeCcHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGAN----CIYPLLGASLL----GWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 115 ~~~~vLDIGtGsG----~I~~~La~~~~----~~~v~gvDid~~al~~A~~Ni 159 (384)
...+|...||.|| .|+.+|....+ .++|+|+|||+.+++.|++-+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 3589999999999 34444544322 478999999999999998864
No 213
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.63 E-value=0.054 Score=50.83 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=41.4
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
+||+||+|||-=+..+|..+|..+..-+|+++..+..-+.-+...+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~ 73 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG 73 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC
Confidence 6999999999999999999999999999999999877777777665
No 214
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0036 Score=64.39 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..+..+||||||+|.++.+.+... .-.|+|+|+=.-|.++|++...+|+ .+++|+++...
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkr 124 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKR 124 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccc
Confidence 456789999999998876555444 4479999999999999999999998 99999998654
No 215
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.45 E-value=0.0052 Score=58.53 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=32.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~ 154 (384)
....+||+|||+|.+...++.. ...+|+|+|+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4558999999999998888764 34589999999988765
No 216
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.45 E-value=0.0014 Score=62.35 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N 158 (384)
-.++||+|||+|..+..|-.. -.+.+|+|||+.|++.|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 568999999999988777533 24789999999999998663
No 217
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.41 E-value=0.026 Score=55.60 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=54.6
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
+.+++||||.||.|-.-+-.....+. .++...|.++.+++..++-++.++ |++.++|.++|..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd 199 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFD 199 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCC
Confidence 57899999999999765444455564 689999999999999999999998 99888999999654
No 218
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.005 Score=55.09 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=66.8
Q ss_pred CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 83 QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 83 ~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
.-+|-||-|...++.+..++.. +.+++.+|||+|-|-|-+..+... -..-+|+|+++..+.+++-.+-+.
T Consensus 49 ~cvPYVpAtteQv~nVLSll~~---------n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~ 118 (199)
T KOG4058|consen 49 LCVPYVPATTEQVENVLSLLRG---------NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA 118 (199)
T ss_pred ecccccCccHHHHHHHHHHccC---------CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH
Confidence 4457799999999999888754 345789999999999855444332 246799999999999999999998
Q ss_pred CCCCCceEEEEcCCC
Q 016734 163 PHISELIEIRKVDNS 177 (384)
Q Consensus 163 ~~l~~~I~~~~~d~~ 177 (384)
+ +..+..|+.-|.-
T Consensus 119 g-~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 119 G-CAKSTRFRRKDLW 132 (199)
T ss_pred h-cccchhhhhhhhh
Confidence 8 8888888877754
No 219
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.40 E-value=0.05 Score=48.15 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=68.0
Q ss_pred EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCc
Q 016734 141 SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPA 220 (384)
Q Consensus 141 ~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 220 (384)
+|+|+||+++|++.+++.++..+ +.+++++++..-.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe------------------------------------------- 36 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHE------------------------------------------- 36 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GG-------------------------------------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHH-------------------------------------------
Confidence 68999999999999999999998 8889999986521
Q ss_pred CCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEE
Q 016734 221 GAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300 (384)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~ 300 (384)
.+ ...+ ..+.+|++|-|==|.|..+ .++.|. -.-...-++.+..+++.+|..
T Consensus 37 ---------~l-~~~i-~~~~v~~~iFNLGYLPggD--------------k~i~T~---~~TTl~Al~~al~lL~~gG~i 88 (140)
T PF06962_consen 37 ---------NL-DEYI-PEGPVDAAIFNLGYLPGGD--------------KSITTK---PETTLKALEAALELLKPGGII 88 (140)
T ss_dssp ---------GG-GGT---S--EEEEEEEESB-CTS---------------TTSB-----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ---------HH-HhhC-ccCCcCEEEEECCcCCCCC--------------CCCCcC---cHHHHHHHHHHHHhhccCCEE
Confidence 01 1112 1258999999988877533 222222 111223346777888999998
Q ss_pred EEEecC--C---CCHHHHHHHHHHcCCeEEEE
Q 016734 301 TSMVGR--K---SNLKFLISKLRKVGVTIVKT 327 (384)
Q Consensus 301 t~~vgk--~---~~l~~l~~~L~~~g~~~v~~ 327 (384)
+.++-. . .-.+.+.+.+++..-+.+.+
T Consensus 89 ~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V 120 (140)
T PF06962_consen 89 TIVVYPGHPGGKEESEAVEEFLASLDQKEFNV 120 (140)
T ss_dssp EEEE--STCHHHHHHHHHHHHHHTS-TTTEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCcceEEE
Confidence 776642 1 12355666666655433333
No 220
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.36 E-value=0.011 Score=62.66 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=51.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
....+||||||.|-....+|...|+..++|+|+....+..|...+...+ +. ++.++..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l~-N~~~~~~~ 405 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-IT-NFLLFPNN 405 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-CC-eEEEEcCC
Confidence 3568999999999999999999999999999999999999988888776 65 47776654
No 221
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.36 E-value=0.0027 Score=63.51 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=38.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH-------HHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE-------WAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~-------~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
+..|.|-=.|+|.+ ++++...|+-|+|+|||-.++. ..+.|.+.-+..+.-+.++.+|
T Consensus 209 GdivyDPFVGTGsl--Lvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 209 GDIVYDPFVGTGSL--LVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred CCEEecCccccCce--eeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 45799988888876 4555578999999999998887 2344555555222224444444
No 222
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.20 E-value=0.0081 Score=57.59 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=41.6
Q ss_pred CeEEEECCcccHH-HHHHHhhccC--CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 117 VKGFDIGTGANCI-YPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 117 ~~vLDIGtGsG~I-~~~La~~~~~--~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+||+||||.|-. .++| +..++ ..++|+|.+|.|++..++|...+. +++.....|.
T Consensus 73 ~~ilEvGCGvGNtvfPll-~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dl 131 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLL-KTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDL 131 (264)
T ss_pred hhheeeccCCCcccchhh-hcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceec
Confidence 3899999999974 4444 44444 899999999999999999987663 3455444443
No 223
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.19 E-value=0.095 Score=46.71 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=25.6
Q ss_pred EEEeCcHHHHHHHHHHHHHCC-CCCCceEEEEcCCC
Q 016734 143 VGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDNS 177 (384)
Q Consensus 143 ~gvDid~~al~~A~~Ni~~n~-~l~~~I~~~~~d~~ 177 (384)
+|+|+|+.|++.|++..+..+ ....+|+++++|..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~ 36 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI 36 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechh
Confidence 589999999999987765322 02346999998743
No 224
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.048 Score=53.63 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=63.7
Q ss_pred cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (384)
Q Consensus 72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a 151 (384)
.||.-+-+...++.=- -+--.|.+++.-.-... ...+.+||=||-|.|...-.+.+..+-.+++.||||+..
T Consensus 41 ~~g~~l~ldg~~q~~e-~de~~yhEml~h~~~~a-------h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~V 112 (282)
T COG0421 41 DFGKVLVLDGVVQLTE-RDEFIYHEMLAHVPLLA-------HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAV 112 (282)
T ss_pred ccceEEEecChhhhcc-chhHHHHHHHHhchhhh-------CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHH
Confidence 4555555555555422 12224555554332221 123469999999999998888776667799999999999
Q ss_pred HHHHHHHHHHCC--CCCCceEEEEcCC
Q 016734 152 LEWAEKNVKSNP--HISELIEIRKVDN 176 (384)
Q Consensus 152 l~~A~~Ni~~n~--~l~~~I~~~~~d~ 176 (384)
+++|++=..... ....|++++.+|.
T Consensus 113 i~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 113 IELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHhccCcccccCCCceEEEeccH
Confidence 999998764321 1236888888774
No 225
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.51 E-value=0.057 Score=53.93 Aligned_cols=147 Identities=15% Similarity=0.197 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCC----
Q 016734 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE---- 167 (384)
Q Consensus 92 ~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~---- 167 (384)
-++=.||...|-.... .....++|+|||-|.=.+-..+.. --.++|+||.+.+++.|++--+.-....+
T Consensus 100 RnfNNwIKs~LI~~y~------~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f 172 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYT------KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIF 172 (389)
T ss_pred hhhhHHHHHHHHHHHh------ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccc
Confidence 3555677665543211 234468999999997533332211 12799999999999999886653211111
Q ss_pred ceEEEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEE
Q 016734 168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247 (384)
Q Consensus 168 ~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~c 247 (384)
.+.++.+|-.. + .+-.-+...+.+||+|=|
T Consensus 173 ~a~f~~~Dc~~------------------------~--------------------------~l~d~~e~~dp~fDivSc 202 (389)
T KOG1975|consen 173 TAVFIAADCFK------------------------E--------------------------RLMDLLEFKDPRFDIVSC 202 (389)
T ss_pred eeEEEEeccch------------------------h--------------------------HHHHhccCCCCCcceeee
Confidence 25666666221 0 000001113445999888
Q ss_pred CCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHc
Q 016734 248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV 320 (384)
Q Consensus 248 NPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~ 320 (384)
-==|+=+.+. .+=.+.++......++++|.| +|...+...|+..|++.
T Consensus 203 QF~~HYaFet----------------------ee~ar~~l~Nva~~LkpGG~F---IgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 203 QFAFHYAFET----------------------EESARIALRNVAKCLKPGGVF---IGTIPDSDVIIKRLRAG 250 (389)
T ss_pred eeeEeeeecc----------------------HHHHHHHHHHHHhhcCCCcEE---EEecCcHHHHHHHHHhc
Confidence 6433322211 123677778888888999985 45566888999999876
No 226
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.38 E-value=0.3 Score=46.18 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhccCeEE-EEEe-cCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEecC
Q 016734 283 ITRIIEDSVALKQTFRWY-TSMV-GRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345 (384)
Q Consensus 283 v~~ii~eS~~l~~~~~w~-t~~v-gk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWsf~ 345 (384)
+..+++|+.++++.+|++ ..|| ++-.+.+..++.+++.||+... ++.+.+ +.+..-|.
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~--~d~~n~---~F~~f~F~ 196 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS--KDESNK---HFVLFEFK 196 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE--EE--ST---TEEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe--cccCCC---eEEEEEEE
Confidence 556678898888877754 3555 4566788888999999997544 344332 33455553
No 227
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.38 E-value=0.071 Score=56.28 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=36.4
Q ss_pred CeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
..+.|..||||-+........ ....++|-|+.+.+...|+.|...++
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 479999999998765433221 12469999999999999999987765
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.30 E-value=0.087 Score=49.40 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=39.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH-------CCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-------NPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~-------n~~l~~~I~~~~~d~~ 177 (384)
.....+|||||.|-+-...|....-.+.+|||+.+...+.|+.+.+. .+.-..++.+.++|..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 34689999999998766665444333599999999999998876543 2211235667666643
No 229
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.09 E-value=0.031 Score=52.50 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=54.3
Q ss_pred CCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 86 PrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
|.-|+-.+|-.+--+.... ..+++-+.|||||-|.+...|+-.+|.--++|.||--..-++.++-|.+..
T Consensus 39 PvsP~~mDWS~~yp~f~~~--------~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 39 PVSPQEMDWSKYYPDFRRA--------LNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred CCChHhCcHHHhhhhhhhh--------ccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 5557666655554444432 135678999999999999999999999999999999999999888887653
No 230
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.95 E-value=0.59 Score=45.51 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=32.0
Q ss_pred eEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni 159 (384)
+++|+.||+|.+...+. ..+.+ +.++|+++.|++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~--~~G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLE--KAGFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHH--HcCCEEEEEEeCCHHHHHHHHHhC
Confidence 68999999998865554 34554 678999999999888875
No 231
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.75 E-value=0.1 Score=50.87 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHC
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n 162 (384)
|.+..-+..+.+-+.... + .-.+.+|||+|+|.|.-..++...++. .+++++|.|+.+++.++.-++..
T Consensus 12 p~~YA~~~~vl~El~~r~-p----~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRL-P----DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred hHHHHHHHHHHHHHHHhC-c----CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 545444555555444321 1 235679999999999765444444443 47999999999999998876543
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.75 E-value=0.19 Score=50.04 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=50.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...++|.=+|.|.=+..++...++.+|+|+|.|+.|++.|++.++.. .+++.+++++..
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF~ 79 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNFA 79 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCHH
Confidence 45899999999999888888776689999999999999999988654 357899888754
No 233
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.67 E-value=0.11 Score=50.52 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=50.2
Q ss_pred HHHHHHHHhhccCCcE-E--EecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc
Q 016734 61 TRELTRVLLLHDHGLN-W--WIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL 137 (384)
Q Consensus 61 v~~Lt~alL~~~fgl~-~--~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~ 137 (384)
.+.+.+++|..||-.+ + .+..|.+- |=.++.+ ..+|......+. ......++||||+|.|-+...++..+
T Consensus 44 ~~~l~~~~L~~f~S~T~iNG~LgRG~MF--vfS~~Q~----~~LL~~~~~~~~-~~~~~~~lLDlGAGdG~VT~~l~~~f 116 (265)
T PF05219_consen 44 WHSLASSILSWFMSKTDINGILGRGSMF--VFSEEQF----RKLLRISGFSWN-PDWKDKSLLDLGAGDGEVTERLAPLF 116 (265)
T ss_pred HHHHHHHHHHHHHhHHhHhhhhcCCcEE--EecHHHH----HHHhhhhccCCC-CcccCCceEEecCCCcHHHHHHHhhc
Confidence 4777777888888663 1 23333221 1122322 233332211111 11245689999999999998887654
Q ss_pred cCCEEEEEeCcHHHHH
Q 016734 138 LGWSFVGSDMTDVALE 153 (384)
Q Consensus 138 ~~~~v~gvDid~~al~ 153 (384)
. +|+++|+|+.|..
T Consensus 117 ~--~v~aTE~S~~Mr~ 130 (265)
T PF05219_consen 117 K--EVYATEASPPMRW 130 (265)
T ss_pred c--eEEeecCCHHHHH
Confidence 3 6999999998843
No 234
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.64 E-value=0.046 Score=50.92 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=31.2
Q ss_pred CCCeEEEECCcccH----HHHHHHhhc---c--CCEEEEEeCcHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANC----IYPLLGASL---L--GWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 115 ~~~~vLDIGtGsG~----I~~~La~~~---~--~~~v~gvDid~~al~~A~~N 158 (384)
.+.+|...||++|- |+++|.... . .++++|+|||+.+++.|++=
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 57899999999994 444444421 2 46999999999999999764
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.64 E-value=1.1 Score=42.09 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=89.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
...|+|||+-.|.=+-.++... .+..|+|+|++|-. . .. .|.++++|.... .
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-~~-~V~~iq~d~~~~--~------------ 98 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-IP-GVIFLQGDITDE--D------------ 98 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-CC-CceEEeeeccCc--c------------
Confidence 4689999999998766565554 34569999998733 1 22 488999886530 0
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCC--ccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGT--PEE 272 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~--~~E 272 (384)
+ + ..+...+ ....+|+|||-+ .|++. |. .++
T Consensus 99 ---------~-----------~------------~~l~~~l--~~~~~DvV~sD~-----------ap~~~--g~~~~Dh 131 (205)
T COG0293 99 ---------T-----------L------------EKLLEAL--GGAPVDVVLSDM-----------APNTS--GNRSVDH 131 (205)
T ss_pred ---------H-----------H------------HHHHHHc--CCCCcceEEecC-----------CCCcC--CCccccH
Confidence 0 0 0122222 234579999754 12111 11 110
Q ss_pred ccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCe---eEEEEEEecCC
Q 016734 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP 346 (384)
Q Consensus 273 ~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~~AWsf~~ 346 (384)
.. -.......++-+..++..+|-|.+-+=+....++++..++++ |..+++.+-...+. .=.+++|.|..
T Consensus 132 ~r----~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 132 AR----SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred HH----HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh-hceeEEecCccccCCCceEEEEEecccc
Confidence 00 123333444556667788887776666677888888888754 56677766544442 45677777754
No 236
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.61 E-value=0.12 Score=47.08 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
=+.+++.+..... .....|||.-||||..+ +|+...+-+++|+|++++.++.|++
T Consensus 177 P~~l~~~lI~~~t----------~~gdiVlDpF~GSGTT~--~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAST----------NPGDIVLDPFAGSGTTA--VAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS-----------TT-EEEETT-TTTHHH--HHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhh----------ccceeeehhhhccChHH--HHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3556666665543 24568999999999874 4555667799999999999999975
No 237
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.077 Score=50.12 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=38.1
Q ss_pred CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
..+.||+|+|||.+...++.- .++...+|||.-++.++.+++|+...
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 457999999999888776632 24445599999999999999999765
No 238
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.44 E-value=0.1 Score=53.41 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=49.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCC-ceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~-~I~~~~~d~ 176 (384)
.+.++||.=+|||.=++..+.+.++ .+|++-|+|++|++..++|++.|+ +++ ++++.+.|.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DA 111 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDA 111 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-H
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhH
Confidence 3578999999999999999988654 589999999999999999999998 777 788888774
No 239
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.01 E-value=0.17 Score=49.61 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=98.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~ 193 (384)
....|||+|+|.|.=...++.... ...++|.|+++.-+...+.|+++.| +. .+.+...|...
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~~-~v~~~~~D~~~--------------- 147 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-VF-NVIVINADARK--------------- 147 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--S-SEEEEESHHHH---------------
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-Cc-eEEEEeecccc---------------
Confidence 345799999999988888887765 5699999999999999999999998 54 46666554211
Q ss_pred cccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccc
Q 016734 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (384)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~ 273 (384)
..... ....||.|+.-+|=-...... .+|.....-....+
T Consensus 148 -------------------------------------~~~~~--~~~~fd~VlvDaPCSg~G~i~-r~p~~~~~~~~~~~ 187 (283)
T PF01189_consen 148 -------------------------------------LDPKK--PESKFDRVLVDAPCSGLGTIR-RNPDIKWRRSPEDI 187 (283)
T ss_dssp -------------------------------------HHHHH--HTTTEEEEEEECSCCCGGGTT-TCTTHHHHE-TTHH
T ss_pred -------------------------------------ccccc--cccccchhhcCCCccchhhhh-hccchhhccccccc
Confidence 00001 134699999999975543221 23332111000000
Q ss_pred cccCchH-HHHHHHHHHHHHhh----ccCeE--E-EEEecCCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734 274 VCSGGER-AFITRIIEDSVALK----QTFRW--Y-TSMVGRKSNLKFLISKLRKVGVTIVKTTEF 330 (384)
Q Consensus 274 ~~~GGel-~Fv~~ii~eS~~l~----~~~~w--~-t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~ 330 (384)
-++ ..=.+|++.+..+. +.+|. | ||-+.+.++-.-+...|+++. +++....
T Consensus 188 ----~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~--~~~l~~~ 246 (283)
T PF01189_consen 188 ----EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP--DFELVPI 246 (283)
T ss_dssp ----HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST--SEEEECC
T ss_pred ----chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC--CcEEEec
Confidence 013 23345888888888 77764 3 566677888888888888773 3444443
No 240
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=93.84 E-value=0.3 Score=44.72 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=41.0
Q ss_pred CCCeEEEECCcccHHHHHHHhh-ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~-~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...-||++|.|+|.|.-.+.++ .+...++++|.|++.+..-.+.- +.+.++++|.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda 103 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDA 103 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccch
Confidence 4568999999999998776655 35678999999999887654422 2355777763
No 241
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=93.65 E-value=0.095 Score=43.79 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=37.0
Q ss_pred cEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEec-----CCCCHHHHHH
Q 016734 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RKSNLKFLIS 315 (384)
Q Consensus 241 ~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vg-----k~~~l~~l~~ 315 (384)
+||+||.||||............. .. ....+.-.++.|..++ .|.++..+. .....+.+.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~---~~---------~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK---KK---------KSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc---cc---------cCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 599999999999876432211000 00 2234455666777776 555444332 3445667777
Q ss_pred HHHHc
Q 016734 316 KLRKV 320 (384)
Q Consensus 316 ~L~~~ 320 (384)
.|-+.
T Consensus 68 ~l~~~ 72 (106)
T PF07669_consen 68 FLLNN 72 (106)
T ss_pred HHhcC
Confidence 76543
No 242
>PRK11524 putative methyltransferase; Provisional
Probab=93.60 E-value=0.24 Score=48.44 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=38.5
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
.....|||--+|||.-+ +|+...+-+++|+|++++.++.|++-++..
T Consensus 207 ~~GD~VLDPF~GSGTT~--~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~~ 253 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTG--AVAKASGRKFIGIEINSEYIKMGLRRLDVA 253 (284)
T ss_pred CCCCEEEECCCCCcHHH--HHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 35678999999999774 445556778999999999999999987643
No 243
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.43 E-value=0.13 Score=50.34 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCCeEEEECCccc----HHHHHHHhhcc-----CCEEEEEeCcHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGAN----CIYPLLGASLL-----GWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 115 ~~~~vLDIGtGsG----~I~~~La~~~~-----~~~v~gvDid~~al~~A~~N 158 (384)
...+|.-.||+|| .|+.+|....+ .++|+|+|||..+|+.|+.=
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 4789999999999 56666666554 57999999999999999753
No 244
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.12 E-value=0.43 Score=37.83 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=36.4
Q ss_pred EEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 119 GFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
++|+|||+|... .++..... ..++|+|+++.++..++..... .... .+.+...+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~ 107 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLG-LVDFVVADA 107 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCC-ceEEEEecc
Confidence 999999999865 33322222 5899999999999996655543 2111 156666653
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.99 E-value=0.63 Score=45.69 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=48.7
Q ss_pred CcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHh-h-ccCCEEEEEeCcHHHHHHHHHHHH-HCCC
Q 016734 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA-S-LLGWSFVGSDMTDVALEWAEKNVK-SNPH 164 (384)
Q Consensus 88 vP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~-~-~~~~~v~gvDid~~al~~A~~Ni~-~n~~ 164 (384)
.|--.+|+..+..-+..... .....+.+|+=||+|.=-+..++.. . .++..|+++|+|++|++.|++-++ ..+
T Consensus 96 FpYy~nY~~L~~lE~~~l~~---~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~- 171 (276)
T PF03059_consen 96 FPYYPNYEKLVRLEYAALRI---HAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG- 171 (276)
T ss_dssp STTHHHHHHHHHHHHH-HTT-----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H-
T ss_pred CCcHHHHHHHHHHHHHHHhh---cCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc-
Confidence 36667777766533321100 0112346999999997666555443 3 357889999999999999999888 455
Q ss_pred CCCceEEEEcCC
Q 016734 165 ISELIEIRKVDN 176 (384)
Q Consensus 165 l~~~I~~~~~d~ 176 (384)
|+.++.++.+|.
T Consensus 172 L~~~m~f~~~d~ 183 (276)
T PF03059_consen 172 LSKRMSFITADV 183 (276)
T ss_dssp H-SSEEEEES-G
T ss_pred ccCCeEEEecch
Confidence 788999998874
No 246
>PRK11524 putative methyltransferase; Provisional
Probab=92.86 E-value=0.36 Score=47.16 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=44.9
Q ss_pred CCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHH
Q 016734 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317 (384)
Q Consensus 238 ~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L 317 (384)
.+++||+|++||||.......... +.+...--+.+....+.++.++++.+|.+.+.++ ...+.. ...+
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~~~~~-~~~~ 91 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLI----------EAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TENMPF-IDLY 91 (284)
T ss_pred ccCcccEEEECCCccccccccccc----------ccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chhhhH-HHHH
Confidence 357899999999997522111100 0011011256778899999999999998877655 444443 3444
Q ss_pred HHcCCe
Q 016734 318 RKVGVT 323 (384)
Q Consensus 318 ~~~g~~ 323 (384)
.+.|+.
T Consensus 92 ~~~~f~ 97 (284)
T PRK11524 92 CRKLFT 97 (284)
T ss_pred HhcCcc
Confidence 455653
No 247
>PHA01634 hypothetical protein
Probab=92.64 E-value=0.3 Score=42.86 Aligned_cols=47 Identities=9% Similarity=-0.173 Sum_probs=36.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
...+|+|||.+.|.-++..+. .++ .|+++|.++...+..++|++.|+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 467899999877754444432 343 79999999999999999999886
No 248
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=92.64 E-value=1.6 Score=42.77 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcc-CeEEEEEec-CCCCHHHHHHHHHHcCCeE
Q 016734 283 ITRIIEDSVALKQT-FRWYTSMVG-RKSNLKFLISKLRKVGVTI 324 (384)
Q Consensus 283 v~~ii~eS~~l~~~-~~w~t~~vg-k~~~l~~l~~~L~~~g~~~ 324 (384)
+...+.|+.++++. |.||..+|. +-++...+...|.++||..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence 44556777776665 457778874 4455677788888999963
No 249
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=92.28 E-value=0.43 Score=48.30 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
...++|||||++|.-.-.|..+ +.+|+|||..+-+ ..+..+ .+|..+..+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~~----~~V~h~~~d~ 261 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMDT----GQVEHLRADG 261 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhCC----CCEEEEeccC
Confidence 4568999999999987777654 6799999966532 223333 3688877764
No 250
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.25 E-value=4.7 Score=38.34 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCeE-----EEEEe-------cCCCCHHHHHHHHHHcCCeEEEEE
Q 016734 286 IIEDSVALKQTFRW-----YTSMV-------GRKSNLKFLISKLRKVGVTIVKTT 328 (384)
Q Consensus 286 ii~eS~~l~~~~~w-----~t~~v-------gk~~~l~~l~~~L~~~g~~~v~~~ 328 (384)
|++.+..++...|. +..++ +++-..+.+..+|...||..++..
T Consensus 126 Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 126 MLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred HHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 44445555555555 33333 355566889999999999877765
No 251
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.12 E-value=0.46 Score=47.57 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=41.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE--EEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI--RKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~--~~~d~~ 177 (384)
...++|+|||+|-=...|...+ ..+.++++|||.++|+.|..++..-. .. .+.+ +.+|..
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p-~l~v~~l~gdy~ 142 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FS-HVRCAGLLGTYD 142 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CC-CeEEEEEEecHH
Confidence 3479999999997433333332 25789999999999999999998222 22 2444 666643
No 252
>PRK13699 putative methylase; Provisional
Probab=91.82 E-value=0.81 Score=43.45 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
....|||.-||||..+ +|+...+-+++|+|++++..+.|.+.++.-
T Consensus 163 ~g~~vlDpf~Gsgtt~--~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTC--VAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHH--HHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4568999999999874 444456778999999999999998888654
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.77 E-value=0.15 Score=41.63 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=15.3
Q ss_pred EEECCcccHHHHHHHhhccC---CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 120 FDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 120 LDIGtGsG~I~~~La~~~~~---~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
|||||..|.-...+++.... .+++++|..+. .+.++++++..+ +.+++++++++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s 58 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDS 58 (106)
T ss_dssp --------------------------EEEESS-------------GG-G-BTEEEEES-T
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCc
Confidence 68998888776666655432 37999999996 455566666555 777899999874
No 254
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.61 E-value=0.57 Score=47.65 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=48.9
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
..+|+|-=+|||+=++..+.+.+..+++.-||||+|++.+++|++.|. .+ .+.+++.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~-~~~v~n~D 110 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GE-DAEVINKD 110 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cc-cceeecch
Confidence 578999999999999999988887799999999999999999999993 23 34555544
No 255
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.51 E-value=0.5 Score=47.11 Aligned_cols=60 Identities=18% Similarity=0.044 Sum_probs=46.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
....+||.=-|.|.-+..+..++++.+++|+|.|++|++.|+++++.. .+++.+++++..
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~ 79 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFS 79 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GG
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHH
Confidence 356899999999999888888888899999999999999998877643 468999988754
No 256
>PRK00536 speE spermidine synthase; Provisional
Probab=90.31 E-value=1.4 Score=42.98 Aligned_cols=75 Identities=9% Similarity=-0.155 Sum_probs=51.2
Q ss_pred ccCCcEEEecCCCccCCCcCHHHHHH--HHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 71 HDHGLNWWIPDGQLCPTVPNRSNYIH--WIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 71 ~~fgl~~~vp~~~LiPrvP~r~~yi~--~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
..||.=+-++ ++++ -++-+++. .+.-..... -..+.+||=||.|-|...--+.+. +. +|+-||||
T Consensus 37 ~~fGr~LvLD-~~~~---te~dEfiYHEmLvHppl~~-------h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID 103 (262)
T PRK00536 37 KDFGEIAMLN-KQLL---FKNFLHIESELLAHMGGCT-------KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQAD 103 (262)
T ss_pred cccccEEEEe-eeee---ecchhhhHHHHHHHHHHhh-------CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECC
Confidence 3677777777 6664 34443332 222221211 235689999999999987777643 44 99999999
Q ss_pred HHHHHHHHHH
Q 016734 149 DVALEWAEKN 158 (384)
Q Consensus 149 ~~al~~A~~N 158 (384)
++.++.|++-
T Consensus 104 ~~Vv~~~k~~ 113 (262)
T PRK00536 104 EKILDSFISF 113 (262)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 257
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=90.15 E-value=0.22 Score=44.76 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=29.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV 150 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~ 150 (384)
...++||+||+.|...-.+..+. +.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999887777665 4689999999875
No 258
>PRK13699 putative methylase; Provisional
Probab=88.96 E-value=2.9 Score=39.67 Aligned_cols=77 Identities=12% Similarity=0.320 Sum_probs=51.2
Q ss_pred CCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHH
Q 016734 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317 (384)
Q Consensus 238 ~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L 317 (384)
+++++|+|++=|||.-...... .+ ...+. .-.++....+.++.+++++++++.+..+ ..+...+...+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~--~~-~~~~~--------~~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al 84 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQ--GR-TIAGD--------KTDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAW 84 (227)
T ss_pred CccccceEEeCCCcccccccCC--Cc-ccccc--------cHHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHH
Confidence 4789999999999974311100 00 00010 0246778889999999888888766555 45577788889
Q ss_pred HHcCCeEEE
Q 016734 318 RKVGVTIVK 326 (384)
Q Consensus 318 ~~~g~~~v~ 326 (384)
++.|+....
T Consensus 85 ~~~GF~l~~ 93 (227)
T PRK13699 85 KNAGFSVVG 93 (227)
T ss_pred HHCCCEEee
Confidence 999986433
No 259
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.77 E-value=0.33 Score=41.24 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
.....+|||||.|.+--+|.++ |..-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 4557999999999877666644 4556788863
No 260
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=87.88 E-value=26 Score=33.57 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=81.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCcccc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~ 194 (384)
..+||-+|..||.--..++.-. +.-.|+|||.++.+.+-.-.-+++-. +|--+..|... |
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----NIiPIl~DAr~--P------------- 134 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----NIIPILEDARH--P------------- 134 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----TEEEEES-TTS--G-------------
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----ceeeeeccCCC--h-------------
Confidence 4589999999998766666543 35689999999988766554444332 36666666432 1
Q ss_pred ccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCccccc
Q 016734 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (384)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~ 274 (384)
.-+..+ -+.+|+|+|.=. .|..
T Consensus 135 -----------------------------------~~Y~~l---v~~VDvI~~DVa----------Qp~Q---------- 156 (229)
T PF01269_consen 135 -----------------------------------EKYRML---VEMVDVIFQDVA----------QPDQ---------- 156 (229)
T ss_dssp -----------------------------------GGGTTT---S--EEEEEEE-S----------STTH----------
T ss_pred -----------------------------------HHhhcc---cccccEEEecCC----------ChHH----------
Confidence 112222 247999988621 1211
Q ss_pred ccCchHHHHHHHHHHHHHhhccCeEEEEEecCC---C--C----HHHHHHHHHHcCCeEEEEEEeeCC
Q 016734 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRK---S--N----LKFLISKLRKVGVTIVKTTEFVQG 333 (384)
Q Consensus 275 ~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~---~--~----l~~l~~~L~~~g~~~v~~~e~~qG 333 (384)
.+-++..+..+++.+|.+..++--. + . +..-++.|++.|++..+.+.+..=
T Consensus 157 --------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 157 --------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229)
T ss_dssp --------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred --------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC
Confidence 3444566777899999987776310 1 1 244567888889987777766443
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.54 E-value=0.37 Score=49.87 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=49.6
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCc-eEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~-I~~~~~d~~ 177 (384)
+..|.|+.||.|-.++-++.+ +++|++-|.+++++++-+.|+..|. +... |+++.-|..
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAK 309 (495)
T ss_pred cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHH
Confidence 457899999999887766654 5999999999999999999999997 5554 998887754
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=86.55 E-value=0.55 Score=44.18 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=29.4
Q ss_pred CCCeEEEECCcccHHHH---HHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYP---LLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~---~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
++..|+++|+=.|.=++ .+.+.+ ...+|+|+||+...... .-++.+. +.++|+++++|-.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSI 95 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCC
Confidence 56799999995543333 333334 56799999997554332 2233455 6789999999844
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.83 E-value=4.4 Score=40.36 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=50.2
Q ss_pred CCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
....||.--|.|.-+-.+..+++. .+++|+|.|+.|++.|++....++ +++.++++...
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~ 83 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFA 83 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHH
Confidence 468999999999988888888874 469999999999999999988764 58999998644
No 264
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.69 E-value=0.35 Score=44.12 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=40.0
Q ss_pred CCCeEEEECCcccHHH-HHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCC
Q 016734 115 DKVKGFDIGTGANCIY-PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~-~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~ 163 (384)
...+||++|.|--+++ +++|..-+...|..+|-++++++..++.+..|.
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~ 78 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM 78 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc
Confidence 3468999999966654 556667788899999999999999999888773
No 265
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.60 E-value=4.3 Score=42.84 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=48.2
Q ss_pred CCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHH
Q 016734 82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 82 ~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni 159 (384)
+..+|+ +-++.-+..+.+++.... .. ......+++|+-||.|.+..-+ +..+.+ +.++|+++.|.+.=+.|.
T Consensus 58 ~~~~~~-~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~iDLFsGiGGl~lGf--e~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 58 GKSAWH-RLSEAEFAHLQTLLPKPP--AH-HPHYAFRFIDLFAGIGGIRRGF--EAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCCCCC-CccHHHHHHHHHhcccCc--cc-CcCCCceEEEeCcCccHHHHHH--HHcCCEEEEEEechHHHHHHHHHHc
Confidence 445555 455556667777775421 11 2245679999999999875444 444665 567999999988887774
No 266
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=84.51 E-value=3.3 Score=42.50 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=42.5
Q ss_pred CCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHH---HCC-CCC-CceEEEEcC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK---SNP-HIS-ELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~---~n~-~l~-~~I~~~~~d 175 (384)
...++|=+|-|-|...-.|. ++|+ -+++-||.||++++.|++|.. .|+ .++ .|++++..|
T Consensus 289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 34589999999996554443 6785 489999999999999997653 221 122 367776655
No 267
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=84.39 E-value=2.3 Score=41.59 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=38.1
Q ss_pred CeEEEECCccc---HHHHHHHh-hccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGAN---CIYPLLGA-SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG---~I~~~La~-~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...||||||-- .+- .+++ ..|.++|+-||+||.++..++.-+..+. ..+..++++|..+
T Consensus 70 rQFLDlGsGlPT~~nvH-evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVH-EVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRD 132 (267)
T ss_dssp -EEEEET--S--SS-HH-HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-
T ss_pred ceEEEcccCCCCCCCHh-HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCC
Confidence 47999999943 222 2333 3589999999999999999999988774 2358899999764
No 268
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=84.00 E-value=2.8 Score=36.11 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=32.3
Q ss_pred EECCcccHHHHHH----HhhccCCEEEEEeCcHHHHHHHHHH--HHHCCCCCCceEEEEcC
Q 016734 121 DIGTGANCIYPLL----GASLLGWSFVGSDMTDVALEWAEKN--VKSNPHISELIEIRKVD 175 (384)
Q Consensus 121 DIGtGsG~I~~~L----a~~~~~~~v~gvDid~~al~~A~~N--i~~n~~l~~~I~~~~~d 175 (384)
|||++.|.....+ +...++.+++++|.+|..++..+.| +..|+ ....++++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~-~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND-KDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT-TSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC-CCceEEEEEee
Confidence 8999999333222 2345678999999999999999999 77775 33346666543
No 269
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=82.81 E-value=2.3 Score=41.02 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=31.6
Q ss_pred eEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHH
Q 016734 118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~ 160 (384)
+++|+.||.|.+...+ +..++ .+.|+|+|+.|.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~--~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGL--EQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHH--HHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHH--HhcCcEEEEEeecCHHHHHhhhhccc
Confidence 6899999999886544 44555 46689999999998888864
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=82.06 E-value=2.6 Score=44.61 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=38.9
Q ss_pred CcEEEecCC-CccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhh
Q 016734 74 GLNWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS 136 (384)
Q Consensus 74 gl~~~vp~~-~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~ 136 (384)
|-.|.+|.| ...|. +-..||+.|.+++.... ..+.-..+||+|||+|.++..|..+
T Consensus 82 gd~~~FPgggt~F~~--Ga~~Yid~i~~~~~~~~-----~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 82 GDKFRFPGGGTMFPH--GADHYIDQIAEMIPLIK-----WGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred CCEEEeCCCCccccC--CHHHHHHHHHHHhhccc-----cCCceEEEEeccceeehhHHHHhhC
Confidence 334667665 44444 56789999999886521 1234457999999999998887654
No 271
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=81.98 E-value=6.9 Score=37.22 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=33.6
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~ 161 (384)
...+.||.|+|-|-+.--|..... -+|..||..+..++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence 457899999999999865544333 3899999999999999987654
No 272
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.04 E-value=9 Score=41.83 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=35.4
Q ss_pred ccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEeeCCCeeEEEEEEe
Q 016734 271 EEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS 343 (384)
Q Consensus 271 ~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~~AWs 343 (384)
.|||. ..|...|.+ +.+.++-+++ ++....|.+-|..+||+..+... .|++.-|.+|+.
T Consensus 181 p~~W~----~~~~~~l~~----~~~~~~~~~t----~t~a~~vr~~l~~~GF~v~~~~~--~g~kr~~~~~~~ 239 (662)
T PRK01747 181 PDMWS----PNLFNALAR----LARPGATLAT----FTSAGFVRRGLQEAGFTVRKVKG--FGRKREMLVGEL 239 (662)
T ss_pred hhhcc----HHHHHHHHH----HhCCCCEEEE----eehHHHHHHHHHHcCCeeeecCC--Cchhhhhhhehh
Confidence 46664 456666544 3345555433 35679999999999997443322 244455666753
No 273
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=78.05 E-value=2.9 Score=39.92 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=35.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--------cCCEEEEEeCcHHHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--------LGWSFVGSDMTDVALEWAEKNVKS 161 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--------~~~~v~gvDid~~al~~A~~Ni~~ 161 (384)
.+.+|+|+|.|+|.++.-+...+ ...+++-||+|+...+.-++.+..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 35799999999999887766533 246999999999998888887754
No 274
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.23 E-value=8.1 Score=38.42 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=47.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+..||==|.|+| ++-++|.++ .+++++-.||+.+......+.++++| ++..+..|..+
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCCC
Confidence 4568898999998 677777765 46789999999999999999888775 58888888653
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.86 E-value=6.6 Score=39.44 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=45.8
Q ss_pred EEecCCCccCCCcCH-HHHHHHHHHHhccC--CCCCCCCCCCCCeEEEECCcc-cHHHHHHHhhccCCEEEEEeCcHHHH
Q 016734 77 WWIPDGQLCPTVPNR-SNYIHWIEDLLSSN--IIPTTSRNGDKVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVAL 152 (384)
Q Consensus 77 ~~vp~~~LiPrvP~r-~~yi~~i~dll~~~--~~~~~~~~~~~~~vLDIGtGs-G~I~~~La~~~~~~~v~gvDid~~al 152 (384)
+.+|...+++.+|+- ..-.-.+.+.+... .-..........+|+=+|||+ |.++.++++.....+|+++|++++-+
T Consensus 127 v~vp~~~~~~~~pd~~~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl 206 (350)
T COG1063 127 VRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL 206 (350)
T ss_pred EEeccccCeecCCCCCChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 577877777766665 22222222332211 000000011222799999987 33333445444457899999999999
Q ss_pred HHHHH
Q 016734 153 EWAEK 157 (384)
Q Consensus 153 ~~A~~ 157 (384)
+.|++
T Consensus 207 ~~A~~ 211 (350)
T COG1063 207 ELAKE 211 (350)
T ss_pred HHHHH
Confidence 99987
No 276
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.96 E-value=1.3 Score=46.67 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=54.2
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..+.+|||.=++||.-++..+.+.+++ +++|-|.++.+++..++|++.|+ .++.++..+.|.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA 170 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDA 170 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchH
Confidence 456789999999999999999999886 79999999999999999999997 777777766663
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=75.67 E-value=11 Score=36.20 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=36.3
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHH---HHHHHCCCC----CCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE---KNVKSNPHI----SELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~---~Ni~~n~~l----~~~I~~~~~d~~ 177 (384)
.+|||.=+|-|.=+++++. .|.+|+++|.||....+.+ ++....... ..+|+++++|..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~--~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS--LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp --EEETT-TTSHHHHHHHH--HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred CEEEECCCcchHHHHHHHc--cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 4899999999998888874 3789999999997765544 333333212 247999998854
No 278
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=74.42 E-value=43 Score=32.23 Aligned_cols=57 Identities=11% Similarity=-0.053 Sum_probs=42.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
+..+||.+|-|-|+|...+-. .+..+=+-+|..|+.++.-+.+.-... ++|.++.+-
T Consensus 101 kggrvLnVGFGMgIidT~iQe-~~p~~H~IiE~hp~V~krmr~~gw~ek---~nViil~g~ 157 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQE-APPDEHWIIEAHPDVLKRMRDWGWREK---ENVIILEGR 157 (271)
T ss_pred CCceEEEeccchHHHHHHHhh-cCCcceEEEecCHHHHHHHHhcccccc---cceEEEecc
Confidence 567999999999988766644 444456678999999998888765432 457776664
No 279
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=73.54 E-value=19 Score=35.40 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 89 P~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~ 160 (384)
+||.....+|.+.|.....+. .....+.+||=-|||-|-++--+|.. +..+.|.|.|--|+-..+--+.
T Consensus 31 ~ER~~~~~~I~~~L~~~~p~~-~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 31 EERDPCYSPILDELESLFPPA-GSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred HHHHHHHHHHHHHHHHhhccc-ccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHc
Confidence 678877777777776532211 12345679999999999999999876 7789999999999877766543
No 280
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=72.28 E-value=3.9 Score=39.54 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.4
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N 158 (384)
...++|||||-|.+...|..+. --+++-+|.|..+++.|+.-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc
Confidence 3479999999999998887554 23789999999999988653
No 281
>PRK05854 short chain dehydrogenase; Provisional
Probab=71.01 E-value=13 Score=36.46 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=42.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|+++| |+..++..+ .+++|+.+..+++.++.+...+.... -..++.++..|..+
T Consensus 14 gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~d 76 (313)
T PRK05854 14 GKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLSS 76 (313)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCCC
Confidence 457777787766 777777654 47899999999887776666665432 22358888888653
No 282
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=70.83 E-value=11 Score=37.37 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=41.1
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.+..|+=+| ---..+++++...-.-++.-+|||+..++.-.+-++..+ +. .|+.+.-|..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-~~-~ie~~~~Dlr 211 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-YN-NIEAFVFDLR 211 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-cc-chhheeehhc
Confidence 345688887 333444444433333488999999999999999998887 44 4776666654
No 283
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=70.19 E-value=1.3 Score=44.09 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=47.0
Q ss_pred CCeEEEECCcccHHHH-HHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYP-LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~-~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...|+|+=+|-|...+ .|- ..-...|+|+|.+|.+++.-++|++.|+ ..++-.++.+|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV-~agAk~V~A~EwNp~svEaLrR~~~~N~-V~~r~~i~~gd~R 255 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLV-TAGAKTVFACEWNPWSVEALRRNAEANN-VMDRCRITEGDNR 255 (351)
T ss_pred cchhhhhhcccceEEeehhh-ccCccEEEEEecCHHHHHHHHHHHHhcc-hHHHHHhhhcccc
Confidence 3578999999997654 332 2233489999999999999999999997 7788778777744
No 284
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.90 E-value=7.4 Score=38.64 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=30.8
Q ss_pred EEEECCcccHHHHHHHhhccCCEEE-EEeCcHHHHHHHHHHH
Q 016734 119 GFDIGTGANCIYPLLGASLLGWSFV-GSDMTDVALEWAEKNV 159 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~~~~~~v~-gvDid~~al~~A~~Ni 159 (384)
|+|+-||.|.+..-+ +..+.+++ ++|+++.|++.-+.|.
T Consensus 1 vidLF~G~GG~~~Gl--~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF--EQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHH--HHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 589999999886444 44567654 7999999999888875
No 285
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=69.77 E-value=7.1 Score=37.84 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~a 151 (384)
...+||++|+|+|..+++.| ...++.|+-+|+-...
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~ 121 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVV 121 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhH
Confidence 35689999999997765554 5578899999976543
No 286
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=69.37 E-value=7.7 Score=40.01 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.6
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~N 158 (384)
..++|+|.|-|.++-.|+- .++..|+|||-|..+.+.|++-
T Consensus 155 ~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHHH
Confidence 4799999999999877764 4688999999998777766543
No 287
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.38 E-value=7.1 Score=39.54 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=49.3
Q ss_pred EEEecCCCccCCCcCHHHHHHHHHHHhccCCCC-----C-CCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcH
Q 016734 76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIP-----T-TSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (384)
Q Consensus 76 ~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~-----~-~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~ 149 (384)
.+.+|+..+++- |+..++.. ++=++...... . .-..++.+-|.-+| |.|.+++.+|+.. +++|+++|+++
T Consensus 125 yv~v~~~~~~~i-P~~~d~~~-aApllCaGiT~y~alk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~-ga~Via~~~~~ 200 (339)
T COG1064 125 YVVVPARYVVKI-PEGLDLAE-AAPLLCAGITTYRALKKANVKPGKWVAVVGAG-GLGHMAVQYAKAM-GAEVIAITRSE 200 (339)
T ss_pred EEEEchHHeEEC-CCCCChhh-hhhhhcCeeeEeeehhhcCCCCCCEEEEECCc-HHHHHHHHHHHHc-CCeEEEEeCCh
Confidence 467887877776 88866443 33343321100 0 00123334455555 6677777787655 49999999999
Q ss_pred HHHHHHHHH
Q 016734 150 VALEWAEKN 158 (384)
Q Consensus 150 ~al~~A~~N 158 (384)
+-++.|++-
T Consensus 201 ~K~e~a~~l 209 (339)
T COG1064 201 EKLELAKKL 209 (339)
T ss_pred HHHHHHHHh
Confidence 999988764
No 288
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=67.54 E-value=11 Score=37.71 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCE-EEEEeCcHHHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~-v~gvDid~~al~~A~~Ni~ 160 (384)
..+++|+.||.|.+. ++-+.-+.+ +.++|||+.|++.=+.|..
T Consensus 3 ~~~~idLFsG~GG~~--lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLS--LGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHH--HHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 468999999999886 444444554 5689999999988877754
No 289
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=66.02 E-value=3.4 Score=43.53 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=41.5
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
+....+|=+|-|+|.+...|-..++..+++||++||++++.|+.+...-
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~ 342 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM 342 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh
Confidence 3456788888899988877777788899999999999999999987544
No 290
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=66.02 E-value=13 Score=34.82 Aligned_cols=55 Identities=24% Similarity=0.069 Sum_probs=39.0
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
++|=.|.++| |+..++.++ .+++|+.++.+++.++.+...+...+ ++.++..|..
T Consensus 2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEYG----EVYAVKADLS 58 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEcCCC
Confidence 4666776554 787777665 57899999999988877766665432 4777777764
No 291
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=65.01 E-value=11 Score=38.18 Aligned_cols=60 Identities=17% Similarity=0.057 Sum_probs=45.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcc
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSI 183 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~ 183 (384)
-...+|+|.|.|.+.-.+...+|. +-+++.|...+..+..+.. -+ |..+.+|..+.+|..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~~P~~ 237 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQDTPKG 237 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccccCCCc
Confidence 357899999999998888876664 7888888888877777765 33 666777776656653
No 292
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=63.62 E-value=32 Score=35.24 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhc--------cCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL--------LGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~--------~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
.-.|+..++..... ..+..+++||.|.|.+..-+.... ...++.-||+|++..+.-+++++..
T Consensus 62 la~~~~~~wq~~g~------p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 62 LAEQFLQLWQELGR------PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHhcC------CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34566666654321 245689999999999887655432 2578999999999988888887755
No 293
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=63.51 E-value=5.5 Score=39.25 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=28.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~ 153 (384)
...+|||+|||+|.-++...... ...+...|.+.+.++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 45799999999997665544332 368888998887773
No 294
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=62.76 E-value=4.7 Score=39.19 Aligned_cols=44 Identities=32% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni 159 (384)
+..++||||||+.. +.+|.....--.++.+|..+...+..++=+
T Consensus 56 ~g~~llDiGsGPti-y~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 56 KGETLLDIGSGPTI-YQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp -EEEEEEES-TT---GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 34589999999964 444443222237999999998887655443
No 295
>PRK06125 short chain dehydrogenase; Provisional
Probab=62.61 E-value=36 Score=31.72 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=40.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++|++++.+++.++.+...+.... ..++.++..|..
T Consensus 7 ~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~ 67 (259)
T PRK06125 7 GKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH--GVDVAVHALDLS 67 (259)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCC
Confidence 357777886555 777766554 47899999999887776666665431 235777777754
No 296
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=62.51 E-value=63 Score=30.79 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=47.0
Q ss_pred CCCeEEEECCccc----HHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 115 DKVKGFDIGTGAN----CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 115 ~~~~vLDIGtGsG----~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
....+++++|+.| .|++..|++..+-+++.|-.++..+...++.+...+ +.+.++|+.++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~ 104 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGE 104 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecC
Confidence 3467899966543 456666777778899999999999988888888776 77778988776
No 297
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=62.14 E-value=2.2 Score=40.59 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
++.++||+|+|.|-|...++-.+. +|+|+|.|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhh
Confidence 568999999999999877764332 58999999988765543
No 298
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=61.24 E-value=15 Score=34.59 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 94 yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~ 160 (384)
++.||.+++.. ....+++|+=||+|+++..+.. .+.+++.-|+++..+...+.-++
T Consensus 8 l~~~I~~~ip~---------~~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPK---------NKHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S----------S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---------CCCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHHh
Confidence 46677777753 1356899999999999765543 66799999999998887774443
No 299
>PRK08862 short chain dehydrogenase; Provisional
Probab=60.66 E-value=20 Score=33.37 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=41.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++.++ .+++|+.++.+++.++-+.+.+...+ ..+..+..|..
T Consensus 5 ~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~ 64 (227)
T PRK08862 5 SSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDF 64 (227)
T ss_pred CeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCC
Confidence 357888888887 677776654 58899999999998877766665543 24566666653
No 300
>PRK07063 short chain dehydrogenase; Provisional
Probab=59.50 E-value=57 Score=30.32 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+++| |+..++..+ .+++|+.++.+++.++...+.+...+ ...++.++..|..+
T Consensus 7 ~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-AGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEEccCCC
Confidence 457888887655 777777654 47899999999988877766665422 23468888888653
No 301
>PRK05599 hypothetical protein; Provisional
Probab=59.00 E-value=26 Score=32.67 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=39.9
Q ss_pred eEEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+|=.|+++| |+..++..+ .+++|+.++.+++.++.+.+.++..+ .+.+.++..|..+
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQD 60 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccCC
Confidence 3566677666 677766543 37899999999888877766665543 2347778887653
No 302
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=58.99 E-value=26 Score=32.02 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=39.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|+ +|.|+..++..+ .+++|++++.++..+..+...+...+ ..+.++..|..
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 65 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVR 65 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 346786765 466777776654 47899999999877766655555443 34788888764
No 303
>PRK07478 short chain dehydrogenase; Provisional
Probab=58.46 E-value=27 Score=32.40 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=40.6
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|++.| |+..++..+ .+++|+.++.++..++.+...++..+ .++.++..|..
T Consensus 7 k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 65 (254)
T PRK07478 7 KVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVR 65 (254)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 46776776654 777777654 47899999999988877766665443 35777888764
No 304
>PRK08303 short chain dehydrogenase; Provisional
Probab=57.88 E-value=23 Score=34.66 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=38.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcH----------HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD----------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~----------~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+. +.++.+.+.++..+ .++.++..|+.
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~ 77 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG---GRGIAVQVDHL 77 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC---CceEEEEcCCC
Confidence 457889997777 787777665 578999998873 34444444444333 35677788765
No 305
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=56.66 E-value=96 Score=32.99 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=38.1
Q ss_pred CeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH-HHHHCCCCCCceEEEEcCC
Q 016734 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK-NVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~-Ni~~n~~l~~~I~~~~~d~ 176 (384)
.+++-+|||..-++..+-+... -.++-+|+|+-+++.... |++.+ .-+.+...|.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~~----~~~~~~~~d~ 105 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKER----PEMQMVEMDM 105 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccCC----cceEEEEecc
Confidence 4899999999988766654332 369999999999987754 33222 2356666553
No 306
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=56.42 E-value=29 Score=35.46 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCCCCeEEEECCcccHHHHHHHhhc-------cCCEEEEEeC----cHHHHHHHHHHHH
Q 016734 113 NGDKVKGFDIGTGANCIYPLLGASL-------LGWSFVGSDM----TDVALEWAEKNVK 160 (384)
Q Consensus 113 ~~~~~~vLDIGtGsG~I~~~La~~~-------~~~~v~gvDi----d~~al~~A~~Ni~ 160 (384)
..+.+.|+|+|.|.|.=++.|.+.+ |..++||++. +...++.+.+++.
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 3467899999999999888766543 4569999999 8889988888764
No 307
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.33 E-value=25 Score=36.14 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=31.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~ 160 (384)
..+||-| |++||-.+.+....| .+|+|||+||.-+.+.+--++
T Consensus 36 ~d~vl~I-tSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 36 DDRVLTI-TSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCeEEEE-ccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 4579999 666887777765555 599999999987766654443
No 308
>PRK06197 short chain dehydrogenase; Provisional
Probab=56.22 E-value=36 Score=32.79 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=41.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
....+|=.|+. |.|+..++..+ .+++|+.++.+++..+.+.+.+.... -..++.++..|..+
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d 78 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-PGADVTLQELDLTS 78 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEECCCCC
Confidence 34567766754 55788777654 47899999999887776666554321 12357788888653
No 309
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=55.64 E-value=24 Score=31.81 Aligned_cols=75 Identities=8% Similarity=0.068 Sum_probs=40.2
Q ss_pred EEEEEECCCcccchhhhccCCccccCCCcccccccCchHHHHHHHHHHHHHhhccCeEEEEEecCCCCHH-HHHHHHHHc
Q 016734 242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK-FLISKLRKV 320 (384)
Q Consensus 242 fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS~~l~~~~~w~t~~vgk~~~l~-~l~~~L~~~ 320 (384)
+|+|++=|||......... .+..+.. ....=+.+...++.++.++++.+|.+...++...... .+..++...
T Consensus 1 VdliitDPPY~~~~~~~~~------~~~~~~~-~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNY------FDYGDNK-NHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIF 73 (231)
T ss_dssp EEEEEE---TSSSCS-----------CSCHCC-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcchh------hhccCCC-CHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHh
Confidence 5999999999976541000 0000000 0000167888999999999999999988888433322 334444445
Q ss_pred C-Ce
Q 016734 321 G-VT 323 (384)
Q Consensus 321 g-~~ 323 (384)
| +.
T Consensus 74 g~~~ 77 (231)
T PF01555_consen 74 GGFF 77 (231)
T ss_dssp TT-E
T ss_pred hhhh
Confidence 6 54
No 310
>PRK08339 short chain dehydrogenase; Provisional
Probab=54.76 E-value=73 Score=30.03 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=42.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++.+.+.+.... ..++.++..|..+
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSES--NVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCCC
Confidence 346777887766 777777654 47899999999888877766664431 2357888888653
No 311
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=54.15 E-value=4.4 Score=26.14 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=6.8
Q ss_pred CCCCCCCC
Q 016734 16 IHPKNKYS 23 (384)
Q Consensus 16 mHprN~y~ 23 (384)
-||||+|-
T Consensus 4 ~hprNrYV 11 (28)
T PF12368_consen 4 VHPRNRYV 11 (28)
T ss_pred cCcchhhH
Confidence 59999994
No 312
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=54.04 E-value=81 Score=29.13 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=42.8
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
+..++|=.|++ |.|+..++..+ .+++|+.++.+++.++.....++..+ .++.++..|..+
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCC
Confidence 34578888854 55787777654 48999999999888776666665543 357888888653
No 313
>PRK07791 short chain dehydrogenase; Provisional
Probab=53.87 E-value=31 Score=33.09 Aligned_cols=58 Identities=14% Similarity=-0.012 Sum_probs=38.1
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcH---------HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD---------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~---------~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++++.++.+. +.++.+...+...+ .++.++..|..
T Consensus 6 ~k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~ 74 (286)
T PRK07791 6 GRVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG---GEAVANGDDIA 74 (286)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC---CceEEEeCCCC
Confidence 457888887766 777777655 478999988765 55554444444333 35677777764
No 314
>PRK05872 short chain dehydrogenase; Provisional
Probab=53.86 E-value=26 Score=33.77 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=37.8
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++...+.+.. ...+..+..|..
T Consensus 9 gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~----~~~~~~~~~Dv~ 67 (296)
T PRK05872 9 GKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG----DDRVLTVVADVT 67 (296)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----CCcEEEEEecCC
Confidence 457888886655 777777655 578999999998877655444321 224555567754
No 315
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=53.78 E-value=68 Score=29.90 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=40.2
Q ss_pred eEEEECCcccHHHHHHHhhc------cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~------~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.+|=.|+++| |+..++.++ .+++|+.++.+++.++.+.+.++... ...++.++..|..
T Consensus 2 ~vlItGas~G-IG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 65 (256)
T TIGR01500 2 VCLVTGASRG-FGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER-SGLRVVRVSLDLG 65 (256)
T ss_pred EEEEecCCCc-hHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC-CCceEEEEEeccC
Confidence 3666787665 676666543 58899999999988887777765421 1235778888865
No 316
>PRK07102 short chain dehydrogenase; Provisional
Probab=53.67 E-value=71 Score=29.31 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=40.0
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
+++=.|+. |.|+..++.++ .+++|++++.+++..+...+++...+ ..++.++..|..+
T Consensus 3 ~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG--AVAVSTHELDILD 62 (243)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc--CCeEEEEecCCCC
Confidence 57777744 55787777655 47899999999987765555554432 2468888888653
No 317
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=52.81 E-value=32 Score=34.54 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=32.3
Q ss_pred CCeEEEECCcc-cHHHHHHHhhccCCEEEEEeCcHHHHHHHHHH
Q 016734 116 KVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (384)
Q Consensus 116 ~~~vLDIGtGs-G~I~~~La~~~~~~~v~gvDid~~al~~A~~N 158 (384)
..+||.+|+|+ |.+...+++...-.+++++|.+++.++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 45799999887 66666677654333699999999988888764
No 318
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=52.54 E-value=48 Score=32.11 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceE
Q 016734 91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (384)
Q Consensus 91 r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~ 170 (384)
-..|+..|..+-.. .. |..=.||-.|+..+.. +.-+++.+|+.+...+.-+.|+... .+|.
T Consensus 46 l~~yl~~v~~~n~~----------~~---l~~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~~----~~v~ 106 (245)
T PF04378_consen 46 LQPYLDAVRALNPD----------GE---LRFYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRRD----RRVR 106 (245)
T ss_dssp GHHHHHHHHHHSSS----------SS-----EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--TT----S-EE
T ss_pred HHHHHHHHHHhccC----------CC---cCcCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhccC----CccE
Confidence 35687777655321 11 5666788877666542 3458999999999999888887653 3799
Q ss_pred EEEcCCCCCCCcccccccCCccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCC
Q 016734 171 IRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250 (384)
Q Consensus 171 ~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPP 250 (384)
+.+.|..+ -+.+++...++=-+|+.-||
T Consensus 107 v~~~DG~~----------------------------------------------------~l~allPP~~rRglVLIDPp 134 (245)
T PF04378_consen 107 VHHRDGYE----------------------------------------------------GLKALLPPPERRGLVLIDPP 134 (245)
T ss_dssp EE-S-HHH----------------------------------------------------HHHHH-S-TTS-EEEEE---
T ss_pred EEeCchhh----------------------------------------------------hhhhhCCCCCCCeEEEECCC
Confidence 98887421 01122234556789999999
Q ss_pred cccchhhhccCCccccCCCcccccccCchHHHHHHHHHHH-HHhhcc--CeEEEEEecCCCCHHHHHHHHHHcCCeEEEE
Q 016734 251 FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDS-VALKQT--FRWYTSMVGRKSNLKFLISKLRKVGVTIVKT 327 (384)
Q Consensus 251 y~~s~~~~~~~p~~~~~g~~~E~~~~GGel~Fv~~ii~eS-~~l~~~--~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~ 327 (384)
|-...+.. =+...+.++ .++..- .-||- ++. .+..+.+.+.|++.++.++-.
T Consensus 135 YE~~~dy~-----------------------~v~~~l~~a~kR~~~G~~~iWYP-i~~-~~~~~~~~~~l~~~~~~~~l~ 189 (245)
T PF04378_consen 135 YEQKDDYQ-----------------------RVVDALAKALKRWPTGVYAIWYP-IKD-RERVDRFLRALKALGIKKVLR 189 (245)
T ss_dssp --STTHHH-----------------------HHHHHHHHHHHH-TTSEEEEEEE-ESS-HHHHHHHHHHHHHH-SSE-EE
T ss_pred CCCchHHH-----------------------HHHHHHHHHHHhcCCcEEEEEee-ccc-HHHHHHHHHHHHhcCCCCeEE
Confidence 96543321 122222222 233221 24764 344 456788889999999888777
Q ss_pred EEeeC
Q 016734 328 TEFVQ 332 (384)
Q Consensus 328 ~e~~q 332 (384)
.|+.-
T Consensus 190 ~El~v 194 (245)
T PF04378_consen 190 AELRV 194 (245)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 77653
No 319
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=52.02 E-value=37 Score=30.68 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCc
Q 016734 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (384)
Q Consensus 93 ~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid 148 (384)
+.+.|+.+.... -.+-|||+|=|.|--|--|-..+|+-+++.+|-.
T Consensus 16 ~~L~~a~~~v~~----------~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 16 DCLNWAAAQVAG----------LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHTTT------------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHhcC----------CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 456777776643 3467999999999999999999999999999953
No 320
>PRK07326 short chain dehydrogenase; Provisional
Probab=51.66 E-value=79 Score=28.70 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=40.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=+|. +|.|+..++..+ .+++|++++.++..+......+... .++.++..|..
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~ 64 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVR 64 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCC
Confidence 357888885 566887777654 4789999999988776665554422 35888888864
No 321
>PTZ00357 methyltransferase; Provisional
Probab=51.57 E-value=51 Score=36.86 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=41.0
Q ss_pred CCeEEEECCcccHHHHHHHh--hc--cCCEEEEEeCcHHHHHHHHHHHHHCCCC-------CCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGA--SL--LGWSFVGSDMTDVALEWAEKNVKSNPHI-------SELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~--~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l-------~~~I~~~~~d~~~ 178 (384)
...|+=+|+|=|-+--.... +. -..+++|||.++.++.....+...+... .++|+++.+|..+
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 35789999999965433221 11 2568999999977665655553222112 3569999999765
No 322
>PRK08589 short chain dehydrogenase; Validated
Probab=51.39 E-value=41 Score=31.83 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=37.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|+++| |+..++..+ .+++|++++.+ ..++.....+...+ .++.++..|..
T Consensus 6 ~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~ 64 (272)
T PRK08589 6 NKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDIS 64 (272)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecC
Confidence 346777777665 777777654 58999999999 44444444444332 35778888764
No 323
>PRK07677 short chain dehydrogenase; Provisional
Probab=50.98 E-value=88 Score=28.92 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=39.7
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.|++.| |+..++..+ .+++|++++.++..++.+...+...+ .++.++..|..+
T Consensus 3 ~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 61 (252)
T PRK07677 3 VVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP---GQVLTVQMDVRN 61 (252)
T ss_pred EEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCC
Confidence 5777787665 677666554 57899999999887766655554332 468888888653
No 324
>PRK06172 short chain dehydrogenase; Provisional
Probab=50.96 E-value=95 Score=28.60 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=42.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|++ |.|+..++..+ .+++|+.++.+++.++.+.+.++..+ .++.++..|..+
T Consensus 7 ~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG---GEALFVACDVTR 67 (253)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 3578888865 44777777654 47899999999888776666665443 468888888653
No 325
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.14 E-value=93 Score=28.77 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=42.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++.....++..+ .++.++..|..
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVS 68 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 357888887665 777777654 47899999999988877666665443 35777788765
No 326
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=49.94 E-value=36 Score=31.78 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+++| |+..++.++ .+++|++++.+.. +.+.+.++.. ..++.++..|..+
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~~ 66 (251)
T PRK12481 8 GKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL---GRKFHFITADLIQ 66 (251)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc---CCeEEEEEeCCCC
Confidence 457898997665 787877654 5889999887642 2222333332 2367888888653
No 327
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=49.68 E-value=25 Score=33.15 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=25.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc-cCCEEEEEeCc
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMT 148 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-~~~~v~gvDid 148 (384)
..+|||+||-.|.-.-..-++. |+-.|.|||+.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 4689999999998654444444 77789999985
No 328
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=49.63 E-value=40 Score=33.90 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=33.0
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
.+.+|+-||+|-..+...|+ +.| .+|+.||+++.-++.-+-.++..
T Consensus 63 ~ghrivtigSGGcn~L~yls-r~P-a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLS-RAP-ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred CCcEEEEecCCcchHHHHhh-cCC-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 45689999999433555554 434 59999999999888776666544
No 329
>PRK08251 short chain dehydrogenase; Provisional
Probab=49.08 E-value=1.1e+02 Score=28.08 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=41.4
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|+ +|.|+..++.++ .+++|+.++.++..++.....+.... -..++.++..|..+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-PGIKVAVAALDVND 64 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEcCCCC
Confidence 35777774 566888877765 36899999999888776655554331 13468888888653
No 330
>PRK07062 short chain dehydrogenase; Provisional
Probab=48.92 E-value=1e+02 Score=28.71 Aligned_cols=61 Identities=15% Similarity=0.004 Sum_probs=42.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|+++| |+..++..+ .+++|++++.+++.++.+...+.... -..++.++..|..+
T Consensus 8 ~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~ 70 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKF-PGARLLAARCDVLD 70 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEecCCC
Confidence 457888887665 777777665 58899999999988877666554331 12357777887653
No 331
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=48.82 E-value=1.1e+02 Score=28.39 Aligned_cols=59 Identities=17% Similarity=0.050 Sum_probs=43.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.| |+|.|+..++..+ .+++|+.++.+...++.+...+...+ .++.++..|..+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~d 72 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVAD 72 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCCC
Confidence 34677778 5677888888765 47899999999887777666665443 357788888653
No 332
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.43 E-value=1.1e+02 Score=27.84 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=40.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+ +|.|+..++..+ .+++|++++.++..++.....+...+ .++.++..|..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 66 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG---VKVVIATADVS 66 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CeEEEEECCCC
Confidence 346787885 567888877654 47899999999887766555554332 36888888864
No 333
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=47.88 E-value=51 Score=30.80 Aligned_cols=59 Identities=5% Similarity=-0.138 Sum_probs=37.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEe-CcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvD-id~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|+++| |+..++..+ .+++|+.+. .+++.++.....++.. ...++.++..|..
T Consensus 8 ~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~ 69 (260)
T PRK08416 8 GKTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK--YGIKAKAYPLNIL 69 (260)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh--cCCceEEEEcCCC
Confidence 357777787766 777777654 578888874 4565555444444332 2236788888865
No 334
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.70 E-value=38 Score=31.79 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=36.6
Q ss_pred CCeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|.++ +.|+..++.++ .+++|+.++.+.+..+.+.+-.+..+ .+.++..|..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~ 70 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD----APIFLPLDVR 70 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc----cceEEecCcC
Confidence 45788888876 36888877765 47899999998765443333332222 2445666654
No 335
>PRK06949 short chain dehydrogenase; Provisional
Probab=47.59 E-value=1.2e+02 Score=27.88 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.| |+|.|+..++..+ .+++|++++.+++.++.....+...+ .++.++..|..
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG---GAAHVVSLDVT 68 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCC
Confidence 45788888 4456888777654 47899999999988776666554332 35778888764
No 336
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.01 E-value=1.3e+02 Score=27.45 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=40.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+ +|.|+..++..+ .+++|++++.++...+.....++.. ..++.++..|..+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST---GVKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC---CCcEEEEEccCCC
Confidence 356888885 566787777655 4789999999987766554444432 2468888888653
No 337
>PRK07814 short chain dehydrogenase; Provisional
Probab=46.73 E-value=1.2e+02 Score=28.36 Aligned_cols=58 Identities=9% Similarity=0.101 Sum_probs=41.1
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|. +|.|+..++..+ .+++|++++.+++.++...+.+...+ .++.++..|..
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 69 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLA 69 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 357888885 555888777654 58999999999887776655554332 35788888865
No 338
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=46.58 E-value=1.2e+02 Score=28.05 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|. +|.|+..++.++ .+++|++++.++..++.....++..+ .++.++..|..+
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~~ 70 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVTD 70 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCCC
Confidence 457888884 566888887765 48899999999988776666665443 257778887653
No 339
>PRK09242 tropinone reductase; Provisional
Probab=46.55 E-value=1.2e+02 Score=27.98 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=42.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++....++.... -..++.++..|..+
T Consensus 9 ~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCCC
Confidence 357888887654 777777654 47899999999888877766665441 12468888888653
No 340
>PRK06940 short chain dehydrogenase; Provisional
Probab=46.38 E-value=67 Score=30.54 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=37.0
Q ss_pred EEEECCcccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 119 GFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
+|=-|+ |.|+..++..+ .+++|+++|.+++.++.+.+.++..+ .++.++..|+.+
T Consensus 5 ~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d 60 (275)
T PRK06940 5 VVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSS 60 (275)
T ss_pred EEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCC
Confidence 443454 45888887665 47899999999887766555554332 257788888653
No 341
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=46.04 E-value=13 Score=34.34 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCc-ccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 123 GTG-ANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 123 GtG-sG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
|+| ++-|+..+++++ .+++|+.++.+.+.++.+.+.+.... ... ++..|..
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~--~~~--~~~~D~~ 54 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY--GAE--VIQCDLS 54 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT--TSE--EEESCTT
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc--CCc--eEeecCc
Confidence 566 334777777765 58999999999998766666555432 223 5777764
No 342
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=45.94 E-value=39 Score=27.50 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=30.2
Q ss_pred CcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 124 TGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 124 tGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
||.|.++..++..+ .++.|+.+|.|++.++.++. .+ +.++.+|..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~ 50 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDAT 50 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc-----cccccccch
Confidence 56667777776654 35699999999998766643 22 568888754
No 343
>PRK06914 short chain dehydrogenase; Provisional
Probab=45.67 E-value=1.3e+02 Score=28.27 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=40.5
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..+|=.|++ |.|+..++..+ .+++|++++.+++.++.....+...+ ...++.++..|..+
T Consensus 4 k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d 65 (280)
T PRK06914 4 KIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN-LQQNIKVQQLDVTD 65 (280)
T ss_pred CEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCceeEEecCCCC
Confidence 357777754 44777776543 47899999998887766655554433 34568888888653
No 344
>PRK07576 short chain dehydrogenase; Provisional
Probab=45.66 E-value=1.3e+02 Score=28.32 Aligned_cols=58 Identities=9% Similarity=-0.052 Sum_probs=39.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|. +|.|+..++..+ .+++|++++.+++.++.....+...+ .++.++..|..
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 68 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVR 68 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCC
Confidence 357888874 566887777654 58899999999877665544444322 24677777764
No 345
>PRK05876 short chain dehydrogenase; Provisional
Probab=43.06 E-value=1.3e+02 Score=28.49 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|.++| |+..++..+ .+++|+.+|.++..++.+.+.+...+ .++.++..|..+
T Consensus 6 ~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCCC
Confidence 346887787655 777777654 47899999999888776655554433 357778888653
No 346
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=42.96 E-value=1.5e+02 Score=27.42 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=38.6
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|. +|.|+..++..+ .+++++.+|.+...++.....+.... -..++.++..|..
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY-GEGMAYGFGADAT 63 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-CCceeEEEEccCC
Confidence 35777885 456787777654 47899999999877665544443221 1135788888864
No 347
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=42.60 E-value=1.5e+02 Score=27.71 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=43.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+++| |+..++..+ .+++++.++.+++.++.+..++...+ .++.++..|..+
T Consensus 10 ~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 70 (265)
T PRK07097 10 GKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVTD 70 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 457888888766 676666554 47899999999988887777776543 358888888653
No 348
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=42.59 E-value=89 Score=30.18 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=37.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.| |+|.|+..++.++ .+++|+++..++.....+.......+ ...++.++.+|..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d 67 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-AKERLKLFKADLLD 67 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-CCCceEEEeCCCCC
Confidence 45788787 5688888887765 47889888777654433222111111 22457777777654
No 349
>PRK05855 short chain dehydrogenase; Validated
Probab=42.03 E-value=61 Score=33.76 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=57.4
Q ss_pred ecCCCccCCCcCHHHHHHHHHHHhccCCC----C--------CCCCCCCCCeEEEECCcccHHHHHHHhhc--cCCEEEE
Q 016734 79 IPDGQLCPTVPNRSNYIHWIEDLLSSNII----P--------TTSRNGDKVKGFDIGTGANCIYPLLGASL--LGWSFVG 144 (384)
Q Consensus 79 vp~~~LiPrvP~r~~yi~~i~dll~~~~~----~--------~~~~~~~~~~vLDIGtGsG~I~~~La~~~--~~~~v~g 144 (384)
++.|++.+. ..-..+...+.+++..... + .....-...++|=+|. +|.|+..++.++ .+++|+.
T Consensus 267 ~~~gH~~~~-e~p~~~~~~i~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~ 344 (582)
T PRK05855 267 IKAGHWLPM-SHPQVLAAAVAEFVDAVEGGPPARALLRARVGRPRGPFSGKLVVVTGA-GSGIGRETALAFAREGAEVVA 344 (582)
T ss_pred ccCCCcchh-hChhHHHHHHHHHHHhccCCCchHHHHHhhhccccccCCCCEEEEECC-cCHHHHHHHHHHHHCCCEEEE
Confidence 355666654 4445566666666543210 0 0001122346776766 455888887765 5789999
Q ss_pred EeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 145 SDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 145 vDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++.++..++.+...++..+ .++.++..|+.+
T Consensus 345 ~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~ 375 (582)
T PRK05855 345 SDIDEAAAERTAELIRAAG---AVAHAYRVDVSD 375 (582)
T ss_pred EeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCC
Confidence 9999888777666665443 258888888653
No 350
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.94 E-value=1.6e+02 Score=26.66 Aligned_cols=58 Identities=16% Similarity=-0.036 Sum_probs=40.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|++ |.|+..+++.+ .+++|++++.+++.+..+.+.+...+ ++.++..|..+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG----NIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEECCCCC
Confidence 3578888886 44777777654 48899999999887765544443332 47778887653
No 351
>PRK06181 short chain dehydrogenase; Provisional
Probab=41.92 E-value=1.5e+02 Score=27.36 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=38.6
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.|+. |.|+..++..+ .+++|++++.++...+.+...+...+ .++.++..|..+
T Consensus 3 ~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG---GEALVVPTDVSD 61 (263)
T ss_pred EEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCC
Confidence 46666644 55777776543 47899999999877776655554433 367788887653
No 352
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=41.87 E-value=3.5e+02 Score=26.62 Aligned_cols=174 Identities=14% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCCccccCCCHHHHHH--H--HHHHhhccCCcEEEecCCCccCCCc-CHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEE
Q 016734 48 DGRPRIDWTDFNATRE--L--TRVLLLHDHGLNWWIPDGQLCPTVP-NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDI 122 (384)
Q Consensus 48 ~g~~~idf~~~~av~~--L--t~alL~~~fgl~~~vp~~~LiPrvP-~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDI 122 (384)
.|.-.+|.+..+|.+- . .-+.|.+- +.+| +-..|+..|..+... .-|..
T Consensus 42 aG~G~YdL~~~eA~ktgE~~~GI~RL~~a-------------~~lpa~l~~yl~~i~~lN~~-------------~~l~~ 95 (279)
T COG2961 42 AGAGRYDLSGEEAEKTGEYEQGIARLWQA-------------ADLPAELEPYLDAVRQLNPG-------------GGLRY 95 (279)
T ss_pred CCcceeeccchHhhhhhHHHHHHHHHHhc-------------CCchHHHHHHHHHHHHhCCC-------------CCccc
Confidence 4666788888887631 1 11123222 2223 345677766655321 12788
Q ss_pred CCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCCccccccccccCC
Q 016734 123 GTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSG 202 (384)
Q Consensus 123 GtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~ 202 (384)
=+||--++..+.. ..-++.++|+-|+=...-+.|.... .++.+...|...
T Consensus 96 YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~d----~~vrv~~~DG~~------------------------ 145 (279)
T COG2961 96 YPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAGD----RRVRVLRGDGFL------------------------ 145 (279)
T ss_pred CCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCCC----cceEEEecCcHH------------------------
Confidence 8999877655542 3458999999999888888888633 478888887432
Q ss_pred CCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEECCCcccchhhhccCCccccCCCcccccccCchHHH
Q 016734 203 HMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAF 282 (384)
Q Consensus 203 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~~GGel~F 282 (384)
-+.......++=-+|+--|||-...+ ..-
T Consensus 146 ----------------------------~l~a~LPP~erRglVLIDPPfE~~~e-----------------------Y~r 174 (279)
T COG2961 146 ----------------------------ALKAHLPPKERRGLVLIDPPFELKDE-----------------------YQR 174 (279)
T ss_pred ----------------------------HHhhhCCCCCcceEEEeCCCcccccH-----------------------HHH
Confidence 01111224566789999999965432 111
Q ss_pred HHHHHHHH-HHhhcc--CeEEEEEecCCCCHHHHHHHHHHcCCeEEEEEEe
Q 016734 283 ITRIIEDS-VALKQT--FRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF 330 (384)
Q Consensus 283 v~~ii~eS-~~l~~~--~~w~t~~vgk~~~l~~l~~~L~~~g~~~v~~~e~ 330 (384)
+..=++++ .++... .-||-.-- ..+.+.+.+.|++.|+..+-.+|+
T Consensus 175 vv~~l~~~~kRf~~g~yaiWYPik~--r~~~~~f~~~L~~~~i~kiL~iEL 223 (279)
T COG2961 175 VVEALAEAYKRFATGTYAIWYPIKD--RRQIRRFLRALEALGIRKILQIEL 223 (279)
T ss_pred HHHHHHHHHHhhcCceEEEEEeecc--hHHHHHHHHHHhhcCccceeeeEE
Confidence 22222333 233221 24664332 457888888899999877777665
No 353
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=41.69 E-value=12 Score=37.58 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.0
Q ss_pred cEEEEEECCCccc
Q 016734 241 QFDFCICNPPFFE 253 (384)
Q Consensus 241 ~fD~i~cNPPy~~ 253 (384)
..|+||+||||--
T Consensus 135 eADIVVTNPPFSL 147 (336)
T PF13651_consen 135 EADIVVTNPPFSL 147 (336)
T ss_pred cCCEEEeCCCcHH
Confidence 4799999999953
No 354
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=41.59 E-value=57 Score=36.69 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHH----HhhccCeEEEEEecCCCC--HHHHHHH-HHHcCCeEEEE
Q 016734 280 RAFITRIIEDSV----ALKQTFRWYTSMVGRKSN--LKFLISK-LRKVGVTIVKT 327 (384)
Q Consensus 280 l~Fv~~ii~eS~----~l~~~~~w~t~~vgk~~~--l~~l~~~-L~~~g~~~v~~ 327 (384)
..|+.+++.++. ++++..|..+++...++. ...+++. +++.|+...++
T Consensus 560 ~~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~ 614 (875)
T COG1743 560 VEEFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRA 614 (875)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecc
Confidence 566666555543 567888888888875443 3455566 77788764444
No 355
>PRK07904 short chain dehydrogenase; Provisional
Probab=41.09 E-value=1.3e+02 Score=28.21 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=41.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--c-CCEEEEEeCcHHH-HHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--L-GWSFVGSDMTDVA-LEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~-~~~v~gvDid~~a-l~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...++|=.|+++| |+..++.++ . +++|++++.+++. ++.+.+.++..+ ..++.++..|..
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~ 70 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDAL 70 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCC
Confidence 4457899998655 788887654 2 4899999998774 665555555543 225888888865
No 356
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=40.37 E-value=70 Score=29.80 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=36.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|+++| |+..++..+ .+++|+.++.+++.++....- +..++.++..|..
T Consensus 6 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~ 62 (263)
T PRK06200 6 GQVALITGGGSG-IGRALVERFLAEGARVAVLERSAEKLASLRQR------FGDHVLVVEGDVT 62 (263)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH------hCCcceEEEccCC
Confidence 347888886555 777766654 488999999998766543322 2235777778764
No 357
>PRK05866 short chain dehydrogenase; Provisional
Probab=40.25 E-value=1.6e+02 Score=28.31 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=41.1
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|+++| |+..++..+ .+++|++++.+++.++...+.+...+ .++.++..|..+
T Consensus 41 k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~~~~Dl~d 100 (293)
T PRK05866 41 KRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG---GDAMAVPCDLSD 100 (293)
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCC
Confidence 56887887655 787777654 47899999999888776666654432 357788888653
No 358
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.07 E-value=61 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEK 157 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~ 157 (384)
...+.=+|.|+=-++.+.+.+..++ +++|+|++++-.+.|++
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3467777887766666777776664 89999999999988865
No 359
>PRK07035 short chain dehydrogenase; Provisional
Probab=39.78 E-value=1.8e+02 Score=26.68 Aligned_cols=58 Identities=10% Similarity=-0.041 Sum_probs=40.1
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++|++++.++..++...+.+...+ .++.++..|..
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 67 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG---GKAEALACHIG 67 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 346777887755 777777654 47899999999887776655554432 24667777764
No 360
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=39.78 E-value=44 Score=32.52 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc-----cCCEEEEEeCcH
Q 016734 116 KVKGFDIGTGANCIYPLLGASL-----LGWSFVGSDMTD 149 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~-----~~~~v~gvDid~ 149 (384)
...++|+|||-|-++..++... +...++.||...
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3489999999999998888876 567899999854
No 361
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.53 E-value=71 Score=31.00 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=37.9
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCc-HHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMT-DVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid-~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
+...+|=.|++.| |+..++..+ .+++|+.+|.+ ...++.+...+...+ .++.++..|..
T Consensus 11 ~~k~~lVTGas~g-IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g---~~~~~~~~Dv~ 72 (306)
T PRK07792 11 SGKVAVVTGAAAG-LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG---AKAVAVAGDIS 72 (306)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC---CeEEEEeCCCC
Confidence 3457888888766 677777654 47899999874 334444444444332 35778888764
No 362
>PRK05650 short chain dehydrogenase; Provisional
Probab=39.47 E-value=1.6e+02 Score=27.48 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=39.2
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
++|=.|+. |.|+..++..+ .+++|+.++.+.+.++.+...+...+ .++.++..|..
T Consensus 2 ~vlVtGas-ggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 59 (270)
T PRK05650 2 RVMITGAA-SGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG---GDGFYQRCDVR 59 (270)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 46666754 45777777654 47899999999888776666665443 35778888864
No 363
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.37 E-value=1.9e+02 Score=26.26 Aligned_cols=58 Identities=12% Similarity=-0.033 Sum_probs=40.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|++ |.|+..++..+ .+++|+.++.++..++.+...+...+ .++.++..|..
T Consensus 5 ~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 64 (253)
T PRK08217 5 DKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVT 64 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCC
Confidence 3468877764 55787777654 47899999999887776666555432 35777888754
No 364
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.30 E-value=59 Score=33.03 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=32.4
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~~al~~A~~ 157 (384)
..++|=+|+|.=.++..+.++-. -.+|+.+|+++..++.|++
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 35799999987555555544444 4589999999999999988
No 365
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=38.55 E-value=22 Score=36.74 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=16.5
Q ss_pred CCCeEEEECCcccHHHHHHHh
Q 016734 115 DKVKGFDIGTGANCIYPLLGA 135 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~ 135 (384)
....|+|+|||+|..++.+..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred cceeEEEecCCCCccHHHHHH
Confidence 357899999999987766543
No 366
>PLN02780 ketoreductase/ oxidoreductase
Probab=38.31 E-value=1.2e+02 Score=29.76 Aligned_cols=60 Identities=18% Similarity=0.050 Sum_probs=41.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++.++ .+++|+.++.+++.++...+.++... -..++..+..|..
T Consensus 53 g~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~-~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY-SKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-CCcEEEEEEEECC
Confidence 457888887665 787777655 47899999999998887777665431 1224666666643
No 367
>PRK07890 short chain dehydrogenase; Provisional
Probab=38.15 E-value=2e+02 Score=26.43 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=40.0
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.++|=.|.++ .|+..++..+ .+++|+.++.++..++.+...+...+ .++.++..|..
T Consensus 6 k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 64 (258)
T PRK07890 6 KVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG---RRALAVPTDIT 64 (258)
T ss_pred CEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEecCCC
Confidence 4677777654 4787777654 48999999999887766655554332 35778888864
No 368
>PRK06196 oxidoreductase; Provisional
Probab=38.09 E-value=71 Score=30.99 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=36.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|++ |.|+..++..+ .+++|++++.+++.++.+...+. .+.++..|..
T Consensus 26 ~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-------~v~~~~~Dl~ 81 (315)
T PRK06196 26 GKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-------GVEVVMLDLA 81 (315)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-------hCeEEEccCC
Confidence 3467777855 55888877654 47899999999876654443331 2667777764
No 369
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=37.90 E-value=44 Score=32.37 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~ 153 (384)
....+||||+-||-+.-.+.++ -..+|+|+|+.-.-+.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLH 116 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccC
Confidence 5678999999999987666543 2348999998754333
No 370
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.74 E-value=71 Score=30.05 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=34.6
Q ss_pred CeEEEECC-cccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGT-GANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGt-GsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|+ |++-|+..++.++ .+++|+.++.+....+.+++-.+..+ ....+..|..
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~ 66 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD----SELVFRCDVA 66 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC----CceEEECCCC
Confidence 46777776 4566888888765 57899888766544444444333222 2345667754
No 371
>PRK06194 hypothetical protein; Provisional
Probab=37.66 E-value=1.9e+02 Score=27.24 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=39.4
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|.+ |.|+..++.++ .+++|+.+|.+.+.++.....+...+ .++.++.+|..+
T Consensus 7 k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~d 66 (287)
T PRK06194 7 KVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG---AEVLGVRTDVSD 66 (287)
T ss_pred CEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEECCCCC
Confidence 467766644 55787777654 48899999999877765555444332 257788888653
No 372
>PRK06139 short chain dehydrogenase; Provisional
Probab=37.59 E-value=1.7e+02 Score=29.06 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=42.9
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++...+.++..+ .++.++..|..+
T Consensus 7 ~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTD 67 (330)
T ss_pred CCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCC
Confidence 346777777555 777777654 57899999999999888777776554 257777777653
No 373
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=37.25 E-value=69 Score=29.76 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=35.4
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+.+ .|+..++.++ .+++|+++|.+.. ....+.+... ..++..++.|..
T Consensus 10 ~k~~lItG~~~-gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 67 (253)
T PRK08993 10 GKVAVVTGCDT-GLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL---GRRFLSLTADLR 67 (253)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc---CCeEEEEECCCC
Confidence 35788888754 5888888765 5899999987642 2222333322 235777777754
No 374
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=37.18 E-value=2e+02 Score=26.99 Aligned_cols=59 Identities=15% Similarity=0.015 Sum_probs=40.3
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|.++| |+..++..+ .+++|+.++.+++.++...+.+...+ .++.++..|..+
T Consensus 10 ~k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 70 (278)
T PRK08277 10 GKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG---GEALAVKADVLD 70 (278)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCC
Confidence 356777776654 677766654 58899999999887766655554432 357888888653
No 375
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=36.87 E-value=1.3e+02 Score=27.51 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=41.3
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|. +|.|+..++..+ .+++|++++.++..++.+...++..+ .++.++..|..+
T Consensus 5 ~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 64 (258)
T PRK12429 5 KVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG---GKAIGVAMDVTD 64 (258)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCC
Confidence 35665554 567888887764 47899999999988777666665443 368888888653
No 376
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=36.50 E-value=1.3e+02 Score=32.74 Aligned_cols=62 Identities=21% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCC------CCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNP------HISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~------~l~~~I~~~~~d~~ 177 (384)
....+|=.|. +|.|+..++.++ .+++|++++.+.+.+......+.... ....++.++.+|+.
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3446777765 466888877654 47899999999887765555443321 01135788888864
No 377
>PRK12743 oxidoreductase; Provisional
Probab=36.21 E-value=97 Score=28.78 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=37.9
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEe-CcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvD-id~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.++|=.|++ |.|+..+++.+ .+++|+.+. .+...++.+...++.++ .++.++..|..
T Consensus 3 k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 62 (256)
T PRK12743 3 QVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG---VRAEIRQLDLS 62 (256)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 367778865 44888887765 478888775 45556655555555443 36888888865
No 378
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.79 E-value=68 Score=32.15 Aligned_cols=40 Identities=28% Similarity=0.086 Sum_probs=26.6
Q ss_pred eEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHH
Q 016734 118 KGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni 159 (384)
+|-=||+| .++..+|.. ..|.+|+..|+++++++.++..+
T Consensus 9 ~VaVIGaG--~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 9 TFAAIGSG--VIGSGWVARALAHGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred EEEEECcC--HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 45556654 344433332 35899999999999988766644
No 379
>PLN02253 xanthoxin dehydrogenase
Probab=35.78 E-value=1.7e+02 Score=27.55 Aligned_cols=58 Identities=10% Similarity=-0.084 Sum_probs=39.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|++ |.|+..++..+ .+++|+.+|.+++..+.....+. ...++.++..|..+
T Consensus 18 ~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d 77 (280)
T PLN02253 18 GKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG----GEPNVCFFHCDVTV 77 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc----CCCceEEEEeecCC
Confidence 4568888854 55788877655 57999999998776654433332 12358888888654
No 380
>PRK07041 short chain dehydrogenase; Provisional
Probab=35.76 E-value=95 Score=28.06 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=32.8
Q ss_pred cccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 125 GANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 125 GsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
|+|.|+..++.++ .+++|++++.+++.++.....++. ..++.++..|..
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~ 55 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG----GAPVRTAALDIT 55 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CCceEEEEccCC
Confidence 4556777776654 478999999998776655444432 235778888764
No 381
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=35.68 E-value=94 Score=28.46 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|+++| |+..++..+ .+++|++++.++. ..+.+.+.. +..++.++..|..
T Consensus 5 ~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~---~~~~~~~~~~D~~ 62 (248)
T TIGR01832 5 GKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEA---LGRRFLSLTADLS 62 (248)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHh---cCCceEEEECCCC
Confidence 356888887655 787777765 4789999998652 222333332 2346788888865
No 382
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=35.58 E-value=1.9e+02 Score=26.56 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=40.7
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
+..++|=.|+ +|.|+..++..+ .+++|++++.+++.++.....+...+ ..++.++..|..
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~d~~ 72 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GPQPAIIPLDLL 72 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEeccc
Confidence 3457888884 566787777654 47899999999887766655555443 235667776653
No 383
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=35.47 E-value=79 Score=34.20 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=43.6
Q ss_pred CCeEEEECCcccHHHHHHHh--h--ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGA--S--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~--~--~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...|+=+|.|-|-+.-...+ + ....+++++|-+|.|+..-+. ..... ..++|+++.+|...
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~-W~~~Vtii~~DMR~ 432 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC-WDNRVTIISSDMRK 432 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh-hcCeeEEEeccccc
Confidence 45788899999977644322 1 246799999999999876543 33333 56799999998764
No 384
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=35.01 E-value=85 Score=33.62 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=33.8
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
.+.+|+=+|+|.=.+..+...+..+++|+++|++++.++.|++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3568999999875555555555668899999999999988876
No 385
>PRK09186 flagellin modification protein A; Provisional
Probab=34.96 E-value=2.2e+02 Score=26.06 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=40.4
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|.+. .|+..++..+ .+++|++++.+++.++.+...+.... -...+.++..|..+
T Consensus 5 k~vlItGas~-giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d 66 (256)
T PRK09186 5 KTILITGAGG-LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF-KSKKLSLVELDITD 66 (256)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc-CCCceeEEEecCCC
Confidence 4677777754 4777777654 47899999999888777666664331 12346677787653
No 386
>PRK05875 short chain dehydrogenase; Provisional
Probab=34.94 E-value=2.4e+02 Score=26.34 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=40.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|++ |.|+..++..+ .+++|++++.+++.++.....+...+ -..++.++..|..
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 68 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-GAGAVRYEPADVT 68 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-CCCceEEEEcCCC
Confidence 3578888865 44787777654 47899999998876665544444321 1246788888865
No 387
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=34.75 E-value=67 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=23.9
Q ss_pred ccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 126 ANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 126 sG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
-|...+.+|+.. +.+++++|.+++-++.+++
T Consensus 2 vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 2 VGLMAIQLAKAM-GAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh
Confidence 455666777554 4999999999999888765
No 388
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=34.59 E-value=13 Score=36.73 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~ 157 (384)
.-.++|+|||.|-. + ...|..-++|.|++...+..|+.
T Consensus 46 gsv~~d~gCGngky---~-~~~p~~~~ig~D~c~~l~~~ak~ 83 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKY---L-GVNPLCLIIGCDLCTGLLGGAKR 83 (293)
T ss_pred cceeeecccCCccc---C-cCCCcceeeecchhhhhcccccc
Confidence 45799999999964 2 23478889999999888877754
No 389
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=34.36 E-value=2.5e+02 Score=25.54 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=40.4
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.++|=.|++ |.|+..++..+ .+++|++++.+......+...+...+ .++.++..|..
T Consensus 4 ~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~d~~ 62 (250)
T TIGR03206 4 KTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG---GNAQAFACDIT 62 (250)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 467777754 55777777654 47899999999887776666665432 35888888865
No 390
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=33.93 E-value=2e+02 Score=26.04 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=35.8
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.|+ +|.|+..++..+ .+++|++++.++. +.+++-.........++.++..|..+
T Consensus 4 ~vlItG~-s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (245)
T PRK12824 4 IALVTGA-KRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTD 63 (245)
T ss_pred EEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCC
Confidence 5777774 566788877665 3789999998854 22222222221123468888888653
No 391
>PRK07109 short chain dehydrogenase; Provisional
Probab=33.71 E-value=2.3e+02 Score=27.91 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=42.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++...+.++..+ .++.++..|..+
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVAD 68 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCC
Confidence 346777776554 777777654 47899999999988887777776543 357788888653
No 392
>PRK08226 short chain dehydrogenase; Provisional
Probab=32.96 E-value=2.4e+02 Score=26.08 Aligned_cols=58 Identities=10% Similarity=-0.023 Sum_probs=37.8
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+.+ .|+..++..+ .+++|+.++.++...+.+.+- ...+ .++.++..|..+
T Consensus 6 ~~~~lItG~s~-giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~~---~~~~~~~~Dl~~ 65 (263)
T PRK08226 6 GKTALITGALQ-GIGEGIARVFARHGANLILLDISPEIEKLADEL-CGRG---HRCTAVVADVRD 65 (263)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHhC---CceEEEECCCCC
Confidence 45788888754 4777777654 488999999988654444333 2222 357788888653
No 393
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.71 E-value=92 Score=28.44 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=17.4
Q ss_pred cccHHHHHHHh--hccCCEEEEEeCcHHHHHH
Q 016734 125 GANCIYPLLGA--SLLGWSFVGSDMTDVALEW 154 (384)
Q Consensus 125 GsG~I~~~La~--~~~~~~v~gvDid~~al~~ 154 (384)
|.|.+++.+|. ...|.+|+|+|+|++-++.
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~ 38 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEA 38 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHH
Confidence 44445544443 3468899999999986554
No 394
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=32.70 E-value=1.3e+02 Score=29.17 Aligned_cols=61 Identities=13% Similarity=-0.008 Sum_probs=42.6
Q ss_pred CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=-|..+| |+..++.+ ..+++|+-++.+++.++.+..-+...+.-..++..+..|..
T Consensus 8 gkvalVTG~s~G-IG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 70 (270)
T KOG0725|consen 8 GKVALVTGGSSG-IGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVS 70 (270)
T ss_pred CcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCC
Confidence 446666676666 55444443 36899999999999998888777665522356777777764
No 395
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=32.63 E-value=1.4e+02 Score=27.06 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=26.0
Q ss_pred EECCcccHHHHHHHh--hccCCEEEEEeCcHHHHHHHHHHHHH
Q 016734 121 DIGTGANCIYPLLGA--SLLGWSFVGSDMTDVALEWAEKNVKS 161 (384)
Q Consensus 121 DIGtGsG~I~~~La~--~~~~~~v~gvDid~~al~~A~~Ni~~ 161 (384)
=||+| .++..+|. ...|.+|+.+|.++++++.+++.++.
T Consensus 4 ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 4 VIGAG--TMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EES-S--HHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEcCC--HHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 35554 44433333 23589999999999999998887765
No 396
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=32.61 E-value=1.6e+02 Score=28.23 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=36.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..+||=.|+ +|.|+..|+.++ .+.+|++++.++.............+ ..+++.++.+|..+
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG-AKERLHLFKANLLE 66 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC-CCCceEEEeccccC
Confidence 346665553 688998887765 37899998877543322222111111 22467888887654
No 397
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=32.50 E-value=16 Score=30.49 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=9.2
Q ss_pred EEEECCcccHH
Q 016734 119 GFDIGTGANCI 129 (384)
Q Consensus 119 vLDIGtGsG~I 129 (384)
-+|||||.|--
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 57999999964
No 398
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.32 E-value=92 Score=29.53 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=33.1
Q ss_pred CeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|.|+ +-|+..++..+ .+++|+.++.+....+.+.+ +... . ..+.++..|..
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~--~-~~~~~~~~Dl~ 66 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQ--L-GSDIVLPCDVA 66 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhc--c-CCceEeecCCC
Confidence 4677777766 25777777665 47899988887432233322 2221 1 13456667754
No 399
>PRK08643 acetoin reductase; Validated
Probab=32.12 E-value=2.7e+02 Score=25.60 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=39.6
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+|=.|+. |.|+..++..+ .+++|+.++.+++.++.+...+...+ .++.++..|..+
T Consensus 4 ~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 62 (256)
T PRK08643 4 VALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVSD 62 (256)
T ss_pred EEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCC
Confidence 56666644 45787777654 47899999999888777666665433 357788888653
No 400
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.64 E-value=89 Score=30.91 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=45.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
+..|+==||=|| |+..+|..+ .+++++-+-...+.++...+-++.....+ ++.+++.|+.+
T Consensus 12 ~kvVvITGASsG-IG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~ 74 (282)
T KOG1205|consen 12 GKVVLITGASSG-IGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSD 74 (282)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCC
Confidence 456777788777 788888776 46788888888888888866666664333 68999998764
No 401
>PRK08267 short chain dehydrogenase; Provisional
Probab=31.42 E-value=2.1e+02 Score=26.48 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=38.0
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.|+++ .|+..++..+ .+++|++++.+++.++.....+. ..++.++..|..+
T Consensus 3 ~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-----AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-----CCceEEEEecCCC
Confidence 467777654 4777776654 47899999999887766655433 1358888888653
No 402
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=31.29 E-value=1.7e+02 Score=27.87 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n 162 (384)
....|||.=+|||..+ +++..-+-.++|+|++++.++.+.+-+...
T Consensus 222 ~~diVlDpf~GsGtt~--~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTG--IAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHH--HHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 4568999999999774 334455678999999999999999988765
No 403
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=31.28 E-value=1.1e+02 Score=31.25 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCeEEEECCcccHHHHHHHhhccCC-EEEEEeCcHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEK 157 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~-~v~gvDid~~al~~A~~ 157 (384)
...+.=+|||.=-++.+.+.+..++ +++|+|++++-+++|++
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 3568888888655666666666665 89999999999999975
No 404
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=30.72 E-value=24 Score=32.22 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=7.9
Q ss_pred EEEECCCcc
Q 016734 244 FCICNPPFF 252 (384)
Q Consensus 244 ~i~cNPPy~ 252 (384)
-|.|||||-
T Consensus 64 ~vf~NPPYS 72 (166)
T TIGR01712 64 AVWLNPPYS 72 (166)
T ss_pred eEEecCCCC
Confidence 699999994
No 405
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.66 E-value=99 Score=29.03 Aligned_cols=61 Identities=11% Similarity=-0.050 Sum_probs=35.3
Q ss_pred CCeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|.++ +-|+..++..+ .+++|+.++.+....+..++-.+..+ ..++.++..|..+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d 70 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTS 70 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCC
Confidence 35788888773 56888887765 58899988754322121222222221 1357777777653
No 406
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=30.40 E-value=1.9e+02 Score=29.47 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=38.3
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEE
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~ 171 (384)
..+.+||=-|||.|-++.-|+...+.. -|-|.|--|+-+..--+..-. +++.+.+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~~--qGNEfSy~Mli~S~FiLN~~~-~~nq~~I 203 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFKC--QGNEFSYFMLICSSFILNYCK-QENQFTI 203 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhcccc--cccHHHHHHHHHHHHHHHhhc-cCCcEEE
Confidence 356799999999999999998766554 455888888877665543222 3445554
No 407
>PRK08264 short chain dehydrogenase; Validated
Probab=30.40 E-value=1.4e+02 Score=27.01 Aligned_cols=51 Identities=10% Similarity=-0.078 Sum_probs=34.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCC-EEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~-~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=+|+ +|.|+..++..+ .++ +|++++.++..++. .+ .++.++..|..
T Consensus 6 ~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~---~~~~~~~~D~~ 59 (238)
T PRK08264 6 GKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG---PRVVPLQLDVT 59 (238)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC---CceEEEEecCC
Confidence 356787874 566887777654 477 89999988765432 21 35778888764
No 408
>PRK09072 short chain dehydrogenase; Provisional
Probab=30.33 E-value=2.7e+02 Score=25.77 Aligned_cols=57 Identities=14% Similarity=0.027 Sum_probs=38.4
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|+++| |+..++..+ .+++|++++.+++.++....-+. . ..++.++..|..+
T Consensus 6 ~~vlItG~s~~-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~D~~d 64 (263)
T PRK09072 6 KRVLLTGASGG-IGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y---PGRHRWVVADLTS 64 (263)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c---CCceEEEEccCCC
Confidence 45777776644 676666543 47899999999887766554442 2 2368888888653
No 409
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=30.33 E-value=3.1e+02 Score=25.24 Aligned_cols=59 Identities=19% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+++| |+..++..+ .+++++.++.+...++.+...++..+ .++.++..|..+
T Consensus 11 ~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~ 71 (255)
T PRK06113 11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG---GQAFACRCDITS 71 (255)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCC
Confidence 468999996655 777777654 47899999988887766555444322 357777887653
No 410
>PRK06720 hypothetical protein; Provisional
Probab=29.50 E-value=3.8e+02 Score=23.87 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=38.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|.|+| |+..++..+ .+++|+.+|.++..++.+.+.+...+ ..+.++..|..
T Consensus 16 gk~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 75 (169)
T PRK06720 16 GKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG---GEALFVSYDME 75 (169)
T ss_pred CCEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence 346777777665 666665543 47899999999887766655554332 34666777754
No 411
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.44 E-value=1.1e+02 Score=29.10 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=34.7
Q ss_pred CCeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|.++ +-|+..++..+ .+++|+.++.+....+..++..+..+ ...++..|+.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g----~~~~~~~Dv~ 67 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG----SDFVLPCDVE 67 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC----CceEEeCCCC
Confidence 35688888775 24777777655 57899999887654443333333222 1235667754
No 412
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.40 E-value=3e+02 Score=24.99 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=39.0
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=+|+. |.|+..++..+ .+++|++++.++..++.....+.. + .++.++..|..+
T Consensus 6 ~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~D~~~ 64 (251)
T PRK07231 6 KVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G---GRAIAVAADVSD 64 (251)
T ss_pred cEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C---CeEEEEECCCCC
Confidence 467767665 44777766654 478999999999877666555543 2 357888888653
No 413
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=29.33 E-value=87 Score=30.67 Aligned_cols=40 Identities=20% Similarity=-0.002 Sum_probs=27.2
Q ss_pred EEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHH
Q 016734 119 GFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~ 160 (384)
|.=|| .|.++..++..+ .+.+|+++|.+++.++.+...++
T Consensus 5 V~VIG--~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~ 46 (308)
T PRK06129 5 VAIIG--AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIA 46 (308)
T ss_pred EEEEC--ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHH
Confidence 44455 455665555443 47799999999998887765443
No 414
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.10 E-value=98 Score=29.01 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=34.7
Q ss_pred CCeEEEECCc-ccHHHHHHHhhc--cCCEEEEEeCcH--HHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTG-ANCIYPLLGASL--LGWSFVGSDMTD--VALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtG-sG~I~~~La~~~--~~~~v~gvDid~--~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|.| ++-|+..++..+ .+++|+.++.+. +.++.... .. ..++.++..|..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~---~~~~~~~~~Dv~ 67 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RL---PEPAPVLELDVT 67 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hc---CCCCcEEeCCCC
Confidence 3578888884 566888887765 478999998763 33332222 11 224566777754
No 415
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=28.95 E-value=93 Score=30.13 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=26.5
Q ss_pred eEEEECCcccHHHHHHHhh--ccCCEEEEEeCcHHHHHHHHHHH
Q 016734 118 KGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~~al~~A~~Ni 159 (384)
+|.=||+| .++..++.. ..+.+|+++|.+++.++.+++.+
T Consensus 6 ~V~vIG~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 47 (295)
T PLN02545 6 KVGVVGAG--QMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSI 47 (295)
T ss_pred EEEEECCC--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 34445554 455454443 34789999999999988766544
No 416
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.75 E-value=89 Score=29.17 Aligned_cols=56 Identities=14% Similarity=-0.026 Sum_probs=35.3
Q ss_pred CCeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|.++ +-|+..++.++ .+++|+.++.+....+.+++ .. ...+.++..|..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~----~~--~~~~~~~~~Dl~ 65 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK----LV--DEEDLLVECDVA 65 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh----hc--cCceeEEeCCCC
Confidence 35688788763 45888877765 58999999887543332222 11 124677777764
No 417
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=28.53 E-value=2.2e+02 Score=28.20 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=43.4
Q ss_pred cCCcEEEecCCCccCCCcCHHHHHHHHHHHhccCCCCCCCCCCCCCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcH
Q 016734 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTD 149 (384)
Q Consensus 72 ~fgl~~~vp~~~LiPrvP~r~~yi~~i~dll~~~~~~~~~~~~~~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~ 149 (384)
..+..+.+|++.-.|- +++-|+....+++...... ...-...|+.+|||.-+.++..+.+ .++.+|+|+|...
T Consensus 147 ~~~~~~~~p~~~~n~~--~~~g~~~~~~EI~~q~~~~---~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 147 EGRKPYIIPPGGASPV--GTLGYVRAVGEIATQVKKL---GVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred cCCCEEEECCCCCchh--HHHHHHHHHHHHHHHHHhc---CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 3444566788776554 5666665555555431100 0011246778888877766665543 5789999999965
No 418
>PRK07774 short chain dehydrogenase; Provisional
Probab=28.47 E-value=3.8e+02 Score=24.38 Aligned_cols=57 Identities=23% Similarity=0.151 Sum_probs=38.2
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.++|=.| |+|.|+..++..+ .+.++++++.++..+......+...+ .++.++..|..
T Consensus 7 k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 65 (250)
T PRK07774 7 KVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG---GTAIAVQVDVS 65 (250)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 4677777 4466888877654 47899999999877665555444322 24667777764
No 419
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=2.6e+02 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCeEEEECCcccHHHHHHHhhc----cCCEEEEEeCcHHHHHHHHHHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNV 159 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~----~~~~v~gvDid~~al~~A~~Ni 159 (384)
.-..+|+|+|+.-=..+|...+ ...+++.+|||...++...+-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai 126 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAI 126 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHH
Confidence 4579999999987655554433 3479999999999887654444
No 420
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=27.99 E-value=57 Score=31.47 Aligned_cols=46 Identities=15% Similarity=-0.064 Sum_probs=41.3
Q ss_pred CCCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHH
Q 016734 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~ 160 (384)
.....+|+--|+|.-...+.++.+..++++.|.||.|-++|+...+
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 4568999999999988888899999999999999999999988775
No 421
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=27.78 E-value=3.4e+02 Score=24.67 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=38.9
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.| |+|.|+..++..+ .+++|++++.++...+.....+...+ .++.++..|..+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG---GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCC
Confidence 355555 4567888887654 47899999999877666555444332 368888888653
No 422
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.74 E-value=1.4e+02 Score=28.42 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=34.3
Q ss_pred CeEEEECCc-ccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTG-ANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtG-sG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|.+ ++-|+..++..+ .+++|+.+..+....+.+++..+..+ ...++..|..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~----~~~~~~~Dl~ 70 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG----AFVAGHCDVT 70 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC----CceEEecCCC
Confidence 467777876 356888888765 58899888766433333333333222 2445677754
No 423
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.57 E-value=3e+02 Score=25.43 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+++| |+..++..+ .+++++.++.+ ...+.+.+.+...+ .++.++..|..+
T Consensus 15 ~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~D~~~ 74 (258)
T PRK06935 15 GKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG---RKVTFVQVDLTK 74 (258)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 457888888665 777777654 47899999887 33344444443322 357888888653
No 424
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=27.51 E-value=1.4e+02 Score=31.39 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=44.4
Q ss_pred CCCCeEEEECCcccHHHHHHHhhccC-CEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~~~-~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
....+|||+|+-.|.=...+|+-+.+ -.|+|-|.+..-+..-+.|+.+.| ..+-| +.+.|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v~nti-v~n~D 300 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-VTNTI-VSNYD 300 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-CCceE-EEccC
Confidence 34579999999888655555554433 379999999999999999999998 55433 33344
No 425
>PRK08703 short chain dehydrogenase; Provisional
Probab=27.38 E-value=2.7e+02 Score=25.27 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=38.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~ 176 (384)
..++|=.|++ |.|+..++..+ .+++|++++.++..++.....+...+ ...+.++..|.
T Consensus 6 ~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~ 65 (239)
T PRK08703 6 DKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG--HPEPFAIRFDL 65 (239)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC--CCCcceEEeee
Confidence 3578888864 55787777654 47899999999987776665554432 12345555654
No 426
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.29 E-value=3.3e+02 Score=24.90 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=39.8
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|+ +|.|+..++..+ .+++|++++.+++.++.+.+-+...+ .++.++..|..+
T Consensus 8 ~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 67 (262)
T PRK13394 8 KTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG---GKAIGVAMDVTN 67 (262)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC---ceEEEEECCCCC
Confidence 46775554 456777776654 47899999999987776666655433 357788888653
No 427
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=27.17 E-value=3.6e+02 Score=24.71 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
...+|=.|.+ |.|+..++.++ .+++++.++.++..+......++..+ .++.++..|..+
T Consensus 9 ~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~ 69 (254)
T PRK08085 9 GKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG---IKAHAAPFNVTH 69 (254)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEecCCCC
Confidence 3467777855 45787777665 47899999999887776666555432 356777777653
No 428
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=27.16 E-value=56 Score=33.43 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=38.9
Q ss_pred eEEEECCcccHHHHHHHhhccCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcC
Q 016734 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d 175 (384)
.++|+|||.|-....++ .+....++|+|.++.-+..+..-...-. +.++-.++.++
T Consensus 113 ~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~ 168 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVAD 168 (364)
T ss_pred cccccCcCcCchhHHHH-HhccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhh
Confidence 68999999998876665 4567899999999888777765544333 44433344444
No 429
>PRK06138 short chain dehydrogenase; Provisional
Probab=27.03 E-value=3.3e+02 Score=24.78 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=40.0
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+. |.|+..++..+ .+++|++++.+.+.+......+. . ..++.++..|..+
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~D~~~ 64 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A---GGRAFARQGDVGS 64 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c---CCeEEEEEcCCCC
Confidence 3467777775 55777777654 47899999999877766555554 2 2358888888653
No 430
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=26.49 E-value=95 Score=27.13 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=19.3
Q ss_pred CCeEEEECCcccHHHHHHHhhccCCEEEEEeCcHH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~~~~v~gvDid~~ 150 (384)
..+++++|-|.-.-. +...+..+..|+++|+++.
T Consensus 14 ~~kiVEVGiG~~~~v-A~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEV-AKKLKERGFDVIATDINPR 47 (127)
T ss_dssp SSEEEEET-TT--HH-HHHHHHHS-EEEEE-SS-S
T ss_pred CCcEEEECcCCCHHH-HHHHHHcCCcEEEEECccc
Confidence 349999999976432 2222334689999999986
No 431
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.41 E-value=1.7e+02 Score=27.48 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=32.0
Q ss_pred CeEEEECCccc-HHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGAN-CIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG-~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|+++| -|+..++..+ .+++|+.++.++...+.+++..+..+ ...++..|+.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g----~~~~~~~Dv~ 68 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG----CNFVSELDVT 68 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC----CceEEEccCC
Confidence 45676777653 3676666554 47899988887543333333333222 1234566754
No 432
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=26.24 E-value=4.7e+02 Score=24.32 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=34.6
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEe-CcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvD-id~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+|=.|+++| |+..++..+ .+++|++++ .+++.++...+-+... -..++.++..|..+
T Consensus 3 ~~lITGas~g-IG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~Dv~d 63 (267)
T TIGR02685 3 AAVVTGAAKR-IGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR--RPNSAVTCQADLSN 63 (267)
T ss_pred EEEEeCCCCc-HHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc--cCCceEEEEccCCC
Confidence 4677787766 788887765 578898874 4555555433333221 11245567777653
No 433
>PRK06483 dihydromonapterin reductase; Provisional
Probab=26.17 E-value=1.5e+02 Score=26.97 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=33.0
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
.++|=.|++.| |+..++..+ .+++|+.++.++.... ..++..+ +.++..|..
T Consensus 3 k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~-----~~~~~~D~~ 56 (236)
T PRK06483 3 APILITGAGQR-IGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQAG-----AQCIQADFS 56 (236)
T ss_pred ceEEEECCCCh-HHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHcC-----CEEEEcCCC
Confidence 36777887765 777777654 5789999998875431 2222222 456677754
No 434
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=26.17 E-value=3e+02 Score=27.04 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=36.5
Q ss_pred CCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 115 ~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+||=.| |+|.|+..++..+ .+++|++++.++............ ..++.++.+|..
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~ 68 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE----GDRLRLFRADLQ 68 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc----CCeEEEEECCCC
Confidence 455788777 4788998888765 478999998876543322221111 235777777754
No 435
>PRK12939 short chain dehydrogenase; Provisional
Probab=26.03 E-value=4.3e+02 Score=23.86 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+ +|.|+..++..+ .++++++++.+++.+....+.++.. ..++.++..|..+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA---GGRAHAIAADLAD 67 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCCC
Confidence 356776665 466888887655 4789999999988777665555432 2368888888653
No 436
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.85 E-value=1.7e+02 Score=27.92 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=33.7
Q ss_pred CeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|.++ +-|+..++..+ .+++|+.++.+.+..+.+.+..+..+ .. .++..|+.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~---~~-~~~~~Dv~ 65 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG---SD-YVYELDVS 65 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC---Cc-eEEEecCC
Confidence 4677777652 45787777665 47899999988643333333333222 22 45667754
No 437
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=25.48 E-value=61 Score=35.62 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCeEEEECCcccHHHHHHHhhcc-CCEEEEEeCcH
Q 016734 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTD 149 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~~-~~~v~gvDid~ 149 (384)
...|||+||-.|.-.-..++.+| +.-|+|+|+-|
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34799999999975444444455 56799999754
No 438
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=25.32 E-value=3.8e+02 Score=25.88 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=39.5
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+. |.|+..++..+ .+++|+.++.+++.++.+...+... ..++.++..|..+
T Consensus 6 ~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~ 66 (322)
T PRK07453 6 KGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP---PDSYTIIHIDLGD 66 (322)
T ss_pred CCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc---CCceEEEEecCCC
Confidence 4567777765 45787777654 4789999999887766555544322 2357888888653
No 439
>PRK07024 short chain dehydrogenase; Provisional
Probab=25.03 E-value=3e+02 Score=25.43 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=36.5
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
++|=.|+ +|.|+..++..+ .+++|+.++.+++.++...+.+... .++.++..|..
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~ 60 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA----ARVSVYAADVR 60 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC----CeeEEEEcCCC
Confidence 4566675 455787777654 4789999999987766544433211 15788888865
No 440
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=24.51 E-value=4.3e+02 Score=24.05 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=37.6
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.|+ +|.|+..++..+ .+++++.++.++..++.....+...+ .++.++..|..+
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~ 60 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG---GKAVAYKLDVSD 60 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCC
Confidence 3555664 466777776654 57899999998877665555444433 357888888653
No 441
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.94 E-value=2.1e+02 Score=27.57 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=27.4
Q ss_pred eEEEECCcccHHHHHHHh--hccCCEEEEEeCcHHHHHHHHHHHH
Q 016734 118 KGFDIGTGANCIYPLLGA--SLLGWSFVGSDMTDVALEWAEKNVK 160 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~--~~~~~~v~gvDid~~al~~A~~Ni~ 160 (384)
+|.=||+|+ ++..+|. ...+.+|+.+|++++.++.++..++
T Consensus 5 kIaViGaG~--mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGV--LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 355566653 3333332 2357899999999999998887653
No 442
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=23.93 E-value=36 Score=31.40 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=9.0
Q ss_pred EEEEECCCccc
Q 016734 243 DFCICNPPFFE 253 (384)
Q Consensus 243 D~i~cNPPy~~ 253 (384)
..|.|||||-.
T Consensus 65 g~vf~NPPYs~ 75 (181)
T PF05869_consen 65 GRVFCNPPYSR 75 (181)
T ss_pred ceEEecCchhh
Confidence 46899999965
No 443
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=23.42 E-value=97 Score=31.14 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=15.6
Q ss_pred CCCCeEEEECCcccHHHHHHHh
Q 016734 114 GDKVKGFDIGTGANCIYPLLGA 135 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~ 135 (384)
....+|+|+||-+|.-++.+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 4568999999999988766553
No 444
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.95 E-value=1.1e+02 Score=29.66 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHH
Q 016734 114 GDKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDV 150 (384)
Q Consensus 114 ~~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~ 150 (384)
+.+..||=.||-+|.|+-.|+.++ .+.+|+|+-.+-+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 356689999999999999999876 5889999876543
No 445
>PRK09291 short chain dehydrogenase; Provisional
Probab=22.73 E-value=4.6e+02 Score=23.87 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=38.0
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
++|=.|++ |.|+..++..+ .+++|++++.++..++.........+ ..+.++..|..+
T Consensus 4 ~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 62 (257)
T PRK09291 4 TILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG---LALRVEKLDLTD 62 (257)
T ss_pred EEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcceEEEeeCCC
Confidence 57777765 45777776654 47899999998776655554444333 247888888653
No 446
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.73 E-value=1.9e+02 Score=26.67 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=35.2
Q ss_pred CeEEEECCcc-cHHHHHHHhhc--cCCEEEEEeCc------------HHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMT------------DVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 117 ~~vLDIGtGs-G~I~~~La~~~--~~~~v~gvDid------------~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+|=.|++. |.|+..++..+ .+++|+.++.+ +..... ...+... ..++.++..|..
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~D~~ 77 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLL-KEEIESY---GVRCEHMEIDLS 77 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHH-HHHHHhc---CCeEEEEECCCC
Confidence 4677777653 56887777655 47899998765 333332 2233322 246888888864
No 447
>PRK07775 short chain dehydrogenase; Provisional
Probab=22.53 E-value=5.2e+02 Score=24.20 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=39.5
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..+|=.|+ +|.|+..++..+ .+++|++++.++..+......+...+ .++.++..|..+
T Consensus 11 ~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 70 (274)
T PRK07775 11 RPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG---GEAVAFPLDVTD 70 (274)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCC
Confidence 46777775 467888887765 37899999988776665555444332 357788888653
No 448
>PRK06484 short chain dehydrogenase; Validated
Probab=22.46 E-value=1.6e+02 Score=30.53 Aligned_cols=55 Identities=13% Similarity=-0.065 Sum_probs=37.3
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
...+|=.|+++| |+..++..+ .+++|+.++.+++.++.+.+.+ + ..+.++..|..
T Consensus 5 ~k~~lITGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~D~~ 61 (520)
T PRK06484 5 SRVVLVTGAAGG-IGRAACQRFARAGDQVVVADRNVERARERADSL---G---PDHHALAMDVS 61 (520)
T ss_pred CeEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C---CceeEEEeccC
Confidence 356777787776 777777655 4789999999988766543332 2 24566777754
No 449
>PRK08265 short chain dehydrogenase; Provisional
Probab=22.29 E-value=4.3e+02 Score=24.55 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=37.1
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
..++|=.|+++ .|+..++..+ .+++|+.+|.+++.++...+-+ ..++.++..|..+
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL------GERARFIATDITD 63 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------CCeeEEEEecCCC
Confidence 34778777554 4777777654 4889999999987554332221 2357888888653
No 450
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=22.23 E-value=3.7e+02 Score=24.74 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=37.4
Q ss_pred CeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.| |+|.|+..++..+ .+++|+.+|.+.+.++.....+ ..++.++..|..+
T Consensus 7 ~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~ 63 (257)
T PRK07067 7 KVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI------GPAAIAVSLDVTR 63 (257)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh------CCceEEEEccCCC
Confidence 4677777 4566888887665 5899999999987765443322 2347788888653
No 451
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=22.20 E-value=1.4e+02 Score=28.82 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=23.3
Q ss_pred cccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHH
Q 016734 125 GANCIYPLLGASL--LGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 125 GsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~ 157 (384)
|.|.++..++..+ .+.+|+++|.+++.++.+..
T Consensus 7 G~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 7 GLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4455666655543 46799999999988877653
No 452
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.18 E-value=4.5e+02 Score=24.12 Aligned_cols=57 Identities=11% Similarity=-0.066 Sum_probs=36.2
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..++|=.|++.| |+..++..+ .+++|+.+|.++... .....+...+ ..+.++..|..
T Consensus 8 ~k~vlVtGas~g-IG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~---~~~~~~~~D~~ 66 (260)
T PRK12823 8 GKVVVVTGAAQG-IGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAG---GEALALTADLE 66 (260)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcC---CeEEEEEEeCC
Confidence 356788886544 787777654 578999999986432 2333333322 35777788765
No 453
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.75 E-value=5.1e+02 Score=23.55 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=35.9
Q ss_pred eEEEECCcccHHHHHHHhhc--cCCEEEEEeCc-HHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMT-DVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 118 ~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid-~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.+|=.| |+|.|+..++..+ .++++++++.. +..++.....++.. ..++.++..|..+
T Consensus 4 ~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~ 63 (256)
T PRK12745 4 VALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL---GVEVIFFPADVAD 63 (256)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc---CCceEEEEecCCC
Confidence 567667 4667888777654 47899999864 33433333444332 2368888888653
No 454
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.69 E-value=3.6e+02 Score=27.52 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCeEEEECCcccHHHHHHHhh--ccCCEEEEEeCcH
Q 016734 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTD 149 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~--~~~~~v~gvDid~ 149 (384)
..+++=+|.|. ++..+|.. ..++.|+++|.+.
T Consensus 5 ~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 34677777665 55555544 4589999999985
No 455
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.67 E-value=1.8e+02 Score=27.26 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=22.7
Q ss_pred CeEEEECC-cccHHHHHHHhhc--cCCEEEEEeCc
Q 016734 117 VKGFDIGT-GANCIYPLLGASL--LGWSFVGSDMT 148 (384)
Q Consensus 117 ~~vLDIGt-GsG~I~~~La~~~--~~~~v~gvDid 148 (384)
..+|=.|. |++-|+..++.++ .+++|+.++..
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVG 41 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc
Confidence 46777776 4566888887765 47899887654
No 456
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=21.06 E-value=1.1e+02 Score=31.47 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=21.8
Q ss_pred cccHHHHHHHhhc-cCCEEEEEeCcHHHHHHHHH
Q 016734 125 GANCIYPLLGASL-LGWSFVGSDMTDVALEWAEK 157 (384)
Q Consensus 125 GsG~I~~~La~~~-~~~~v~gvDid~~al~~A~~ 157 (384)
|.|.++.-+|..+ .+.+|+++|+|++.++..++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 4444444333221 26899999999999887765
No 457
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=20.68 E-value=1.9e+02 Score=26.89 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=32.6
Q ss_pred CCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCC
Q 016734 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (384)
Q Consensus 116 ~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~ 177 (384)
..+||=+|+ +|.|+..++..+ .+++|+++-.++..+... ... ..++.++.+|..
T Consensus 17 ~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~----~~~~~~~~~Dl~ 72 (251)
T PLN00141 17 TKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS---LPQ----DPSLQIVRADVT 72 (251)
T ss_pred CCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh---ccc----CCceEEEEeeCC
Confidence 457888875 355776666543 478999987776543211 111 125788888754
No 458
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.66 E-value=23 Score=30.99 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHhhCCCcccceeccCCC---CccccCCCHHHHHHHHHH-----HhhccCCcEEEecCCCcc
Q 016734 29 FALLASLYPSFEPFVFYSRDG---RPRIDWTDFNATRELTRV-----LLLHDHGLNWWIPDGQLC 85 (384)
Q Consensus 29 f~~La~~~p~l~~~v~~~~~g---~~~idf~~~~av~~Lt~a-----lL~~~fgl~~~vp~~~Li 85 (384)
-+.|.+.|..|-.||..|.+. =.++. +|++..+...|| ||+..|+++|+||-.+-.
T Consensus 29 vqrlkeey~sli~yvqnnk~~d~dwfrle-sn~egtrwfgkcwy~hnllkyefdvefdipityp~ 92 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAYVQNNKSNDNDWFRLE-SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPT 92 (167)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcceEec-cCccccceehhhhHhhhhhhheeeeeeccccccCC
Confidence 567889999999999865432 22343 778888888887 478899999999876543
No 459
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.54 E-value=3.3e+02 Score=27.17 Aligned_cols=88 Identities=15% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCCCeEEEECCcccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCCCCCcccccccCC
Q 016734 113 NGDKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190 (384)
Q Consensus 113 ~~~~~~vLDIGtGsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~~~p~~~~~~~~~ 190 (384)
......++=.|+=+| |+...+..+ .+++|+-.-.|.+..+.|.+-+.... -...|.+++.|..+
T Consensus 32 ~~~~~~~vVTGansG-IG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~-~~~~i~~~~lDLss------------ 97 (314)
T KOG1208|consen 32 DLSGKVALVTGATSG-IGFETARELALRGAHVVLACRNEERGEEAKEQIQKGK-ANQKIRVIQLDLSS------------ 97 (314)
T ss_pred cCCCcEEEEECCCCc-hHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEECCCCC------------
Q ss_pred ccccccccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcEEEEEEC
Q 016734 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (384)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~fD~i~cN 248 (384)
...--.+...+.......|+.|+|
T Consensus 98 ----------------------------------l~SV~~fa~~~~~~~~~ldvLInN 121 (314)
T KOG1208|consen 98 ----------------------------------LKSVRKFAEEFKKKEGPLDVLINN 121 (314)
T ss_pred ----------------------------------HHHHHHHHHHHHhcCCCccEEEeC
No 460
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.45 E-value=3.2e+02 Score=25.95 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=50.0
Q ss_pred CCcEEEEEECCCcccchhhhccCCccccCCCcccccc-cCchHHH-HHHHHHHHHHhhccCeEEEEEecCCCCHHHHHHH
Q 016734 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC-SGGERAF-ITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK 316 (384)
Q Consensus 239 ~~~fD~i~cNPPy~~s~~~~~~~p~~~~~g~~~E~~~-~GGel~F-v~~ii~eS~~l~~~~~w~t~~vgk~~~l~~l~~~ 316 (384)
+.++|+++.-|||.-................... ++ .++-..| ....+.+..+.+..++-+....+ ......+...
T Consensus 33 ~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v~~~-~~~~~~~~~~ 110 (302)
T COG0863 33 ENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDG-WDSRGIYLKFILLQWLAEQKRVLKPGGSLYVIDP-FSNLARIEDI 110 (302)
T ss_pred ccceeEEEcCCCccccccccccccccccchhhhh-hhhHHHHHHHHHHHHHHHhhheecCCCEEEEECC-chhhhHHHHH
Confidence 3489999999999876542111000000000000 11 1222566 56667777777777777766666 5777888888
Q ss_pred HHHcCCeE
Q 016734 317 LRKVGVTI 324 (384)
Q Consensus 317 L~~~g~~~ 324 (384)
+++.|+.-
T Consensus 111 ~~~~gf~~ 118 (302)
T COG0863 111 AKKLGFEI 118 (302)
T ss_pred HHhCCCeE
Confidence 88888753
No 461
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=20.33 E-value=2.6e+02 Score=25.39 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=28.1
Q ss_pred CCCeEEEECCcc-cHHHHHHHhhccCCEEEEEeCcHHHHHHHH
Q 016734 115 DKVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (384)
Q Consensus 115 ~~~~vLDIGtGs-G~I~~~La~~~~~~~v~gvDid~~al~~A~ 156 (384)
...+||-.|+|+ |.....+++ ..+.++++++.+++..+.++
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~-~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAK-AAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCeEEEEcCCHHHHHHHH
Confidence 345899999886 333333433 34689999999988777664
No 462
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.25 E-value=6e+02 Score=23.39 Aligned_cols=60 Identities=15% Similarity=0.024 Sum_probs=39.7
Q ss_pred CeEEEECC-cccHHHHHHHhhc--cCCEEEEEeCcHHHHHHHHHHHHHCCCCCCceEEEEcCCCC
Q 016734 117 VKGFDIGT-GANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (384)
Q Consensus 117 ~~vLDIGt-GsG~I~~~La~~~--~~~~v~gvDid~~al~~A~~Ni~~n~~l~~~I~~~~~d~~~ 178 (384)
.++|=.|. |+| |+..++..+ .+++|+.+|.+++.++.+.+.++..- -..++.++..|..+
T Consensus 18 k~vlItG~sg~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 18 KVVLVTAAAGTG-IGSATARRALEEGARVVISDIHERRLGETADELAAEL-GLGRVEAVVCDVTS 80 (262)
T ss_pred CEEEEECCCccc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEEccCCC
Confidence 45666664 444 676666554 47899999999888877776665421 11357888888653
No 463
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=20.11 E-value=1.2e+02 Score=32.06 Aligned_cols=35 Identities=17% Similarity=-0.050 Sum_probs=22.7
Q ss_pred EEEECCcccHHHHHHHhh----ccCCEEEEEeCcHHHHHHH
Q 016734 119 GFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWA 155 (384)
Q Consensus 119 vLDIGtGsG~I~~~La~~----~~~~~v~gvDid~~al~~A 155 (384)
|.=||+|. +++.+|.. ..+.+|+|+|++++-++.-
T Consensus 4 I~ViG~Gy--vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l 42 (473)
T PLN02353 4 ICCIGAGY--VGGPTMAVIALKCPDIEVVVVDISVPRIDAW 42 (473)
T ss_pred EEEECCCH--HHHHHHHHHHhcCCCCeEEEEECCHHHHHHH
Confidence 44455554 44444433 3367899999999887764
Done!