BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016736
         (383 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2GD42|RNC_LACF3 Ribonuclease 3 OS=Lactobacillus fermentum (strain NBRC 3956 / LMG
           18251) GN=rnc PE=3 SV=1
          Length = 232

 Score = 32.3 bits (72), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 237 ILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGK----GTLLHLCDDVIQQEVK 292
           +++ +  Y AKTY     N A      TQ+ Y  +           +  L D V+Q  V 
Sbjct: 1   MITQLQDYLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVS 60

Query: 293 EVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFD 331
           E I   +  + QGK TR    + CE+    +F + C+FD
Sbjct: 61  EYIYRRYPELPQGKLTRLRAAMVCEDSFS-KFAKECHFD 98


>sp|B0K1A1|MIAB_THEPX (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Thermoanaerobacter sp. (strain X514) GN=miaB PE=3
           SV=1
          Length = 471

 Score = 32.0 bits (71), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)

Query: 24  LHLPITVNESKLDKKLLKRYFEEHH-------HDHLPDFADKYVIFRRGIGVDQTTDYFF 76
           LHLP+    +K+ KK+ ++Y +EH+         ++PD A    I    +G    T+  F
Sbjct: 289 LHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVRSNIPDIAITTDII---VGFPGETEEDF 345

Query: 77  MEKVDML 83
           +E +D++
Sbjct: 346 LETLDLV 352


>sp|B0K9L4|MIAB_THEP3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Thermoanaerobacter pseudethanolicus (strain ATCC
           33223 / 39E) GN=miaB PE=3 SV=1
          Length = 471

 Score = 32.0 bits (71), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)

Query: 24  LHLPITVNESKLDKKLLKRYFEEHH-------HDHLPDFADKYVIFRRGIGVDQTTDYFF 76
           LHLP+    +K+ KK+ ++Y +EH+         ++PD A    I    +G    T+  F
Sbjct: 289 LHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVRSNIPDIAITTDII---VGFPGETEEDF 345

Query: 77  MEKVDML 83
           +E +D++
Sbjct: 346 LETLDLV 352


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,353,489
Number of Sequences: 539616
Number of extensions: 5922669
Number of successful extensions: 15773
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 15771
Number of HSP's gapped (non-prelim): 9
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)