Query 016736
Match_columns 383
No_of_seqs 107 out of 122
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qph_A TRMB, A global transcri 84.2 1 3.5E-05 44.0 5.1 70 297-375 23-94 (342)
2 1qbj_A Protein (double-strande 83.1 3.2 0.00011 32.4 6.6 63 289-362 9-76 (81)
3 1xmk_A Double-stranded RNA-spe 75.2 5.5 0.00019 31.1 5.6 56 287-352 8-63 (79)
4 3r0a_A Putative transcriptiona 69.6 11 0.00036 30.9 6.5 75 297-380 31-115 (123)
5 3neu_A LIN1836 protein; struct 63.5 24 0.00081 28.9 7.5 41 318-359 41-81 (125)
6 1sd4_A Penicillinase repressor 63.1 18 0.00061 28.8 6.5 49 299-352 17-65 (126)
7 1qgp_A Protein (double strande 62.9 15 0.0005 28.0 5.6 56 293-359 17-77 (77)
8 3tqn_A Transcriptional regulat 61.3 11 0.00036 30.5 4.9 40 319-359 38-77 (113)
9 1sfx_A Conserved hypothetical 58.5 55 0.0019 24.5 8.8 72 299-379 27-104 (109)
10 2b0l_A GTP-sensing transcripti 52.2 21 0.00071 28.5 5.1 62 292-365 30-97 (102)
11 3by6_A Predicted transcription 44.1 71 0.0024 26.1 7.3 39 318-357 39-77 (126)
12 2ek5_A Predicted transcription 42.7 27 0.00094 28.9 4.5 42 317-359 31-72 (129)
13 2dql_A PEX protein; circadian 41.3 99 0.0034 24.8 7.7 81 293-375 21-112 (115)
14 1y0u_A Arsenical resistance op 40.8 37 0.0013 25.9 4.8 49 304-362 41-89 (96)
15 2qww_A Transcriptional regulat 39.3 1.4E+02 0.0048 23.9 8.5 39 300-347 49-87 (154)
16 1tbx_A ORF F-93, hypothetical 39.1 46 0.0016 25.3 5.1 57 300-361 16-72 (99)
17 2bv6_A MGRA, HTH-type transcri 38.6 64 0.0022 25.6 6.1 51 300-359 45-98 (142)
18 3sxy_A Transcriptional regulat 37.1 33 0.0011 30.2 4.5 41 317-358 38-78 (218)
19 3ihu_A Transcriptional regulat 36.0 40 0.0014 29.8 4.8 41 317-358 42-82 (222)
20 3pqk_A Biofilm growth-associat 35.2 91 0.0031 23.8 6.3 41 303-352 33-73 (102)
21 2oqg_A Possible transcriptiona 34.9 60 0.0021 25.0 5.3 72 292-375 23-102 (114)
22 2rkh_A Putative APHA-like tran 34.8 36 0.0012 30.2 4.2 53 296-349 14-68 (180)
23 4ham_A LMO2241 protein; struct 34.3 1.4E+02 0.0047 24.3 7.6 34 320-354 44-78 (134)
24 2a61_A Transcriptional regulat 33.7 1.5E+02 0.0051 23.3 7.6 41 300-349 41-81 (145)
25 1lj9_A Transcriptional regulat 33.2 1.8E+02 0.006 22.9 9.7 41 300-349 37-77 (144)
26 1okr_A MECI, methicillin resis 33.1 59 0.002 25.5 5.0 63 299-367 17-81 (123)
27 1ztd_A Hypothetical protein PF 33.1 29 0.00099 29.1 3.0 22 288-311 69-90 (133)
28 1p6r_A Penicillinase repressor 32.8 37 0.0013 25.1 3.4 48 299-352 16-64 (82)
29 1q1h_A TFE, transcription fact 32.1 24 0.00083 27.6 2.4 66 301-375 27-101 (110)
30 2qvo_A Uncharacterized protein 31.9 61 0.0021 24.7 4.7 59 307-374 31-89 (95)
31 2hs5_A Putative transcriptiona 31.6 46 0.0016 30.0 4.5 42 317-359 54-95 (239)
32 1hw1_A FADR, fatty acid metabo 31.4 39 0.0013 30.0 4.0 40 317-357 34-73 (239)
33 3bpv_A Transcriptional regulat 29.1 2E+02 0.0069 22.3 9.6 52 300-360 37-91 (138)
34 2v7f_A RPS19, RPS19E SSU ribos 28.9 89 0.0031 26.8 5.7 43 331-375 97-139 (150)
35 3c7j_A Transcriptional regulat 28.0 61 0.0021 29.2 4.7 42 317-359 52-93 (237)
36 1ub9_A Hypothetical protein PH 26.9 1.1E+02 0.0039 22.6 5.5 67 301-376 25-98 (100)
37 1jgs_A Multiple antibiotic res 26.5 2.3E+02 0.0078 22.0 10.2 41 300-349 42-82 (138)
38 3ech_A MEXR, multidrug resista 26.3 2.2E+02 0.0074 22.5 7.4 41 300-349 45-85 (142)
39 1xma_A Predicted transcription 25.4 1.9E+02 0.0066 24.2 7.1 74 303-377 51-133 (145)
40 2esh_A Conserved hypothetical 25.4 2.5E+02 0.0086 22.2 8.3 68 303-375 23-103 (118)
41 3bwg_A Uncharacterized HTH-typ 24.7 64 0.0022 29.1 4.2 41 317-358 32-72 (239)
42 3f8b_A Transcriptional regulat 24.2 2.7E+02 0.0092 22.1 8.1 84 290-375 7-102 (116)
43 2di3_A Bacterial regulatory pr 24.1 51 0.0017 29.4 3.4 40 319-359 33-76 (239)
44 2nyx_A Probable transcriptiona 24.0 3E+02 0.01 22.5 10.1 40 301-349 54-93 (168)
45 3ic7_A Putative transcriptiona 23.5 66 0.0022 26.3 3.7 39 320-359 41-79 (126)
46 2hc5_A ORF 99, hypothetical pr 23.2 1E+02 0.0035 25.5 4.8 65 306-371 34-100 (117)
47 3bj6_A Transcriptional regulat 23.0 2.8E+02 0.0096 21.9 10.3 41 300-349 48-88 (152)
48 3edp_A LIN2111 protein; APC883 22.5 92 0.0031 28.1 4.8 41 317-358 36-76 (236)
49 1on2_A Transcriptional regulat 22.1 76 0.0026 25.6 3.8 48 302-358 18-65 (142)
50 2jt1_A PEFI protein; solution 21.7 72 0.0024 24.3 3.3 39 305-352 23-61 (77)
51 3k2z_A LEXA repressor; winged 21.6 1.3E+02 0.0045 26.0 5.5 53 287-350 6-59 (196)
52 1r1u_A CZRA, repressor protein 20.5 1.3E+02 0.0046 23.1 4.8 40 304-352 37-76 (106)
53 3bro_A Transcriptional regulat 20.0 1.2E+02 0.004 23.9 4.4 52 300-360 42-98 (141)
No 1
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=84.17 E-value=1 Score=44.01 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=51.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechhhHHHHHhhhHHHHHH
Q 016736 297 SFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLKRSNEIIGTTTEEMVL 374 (383)
Q Consensus 297 aY~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~--~~~~a~pl~~A~~~l~~~~~~~~~ 374 (383)
+|..|++.|++|..+|. +..|+.-. .|-++|+.|++.|+|....+ ..|.++|++++++.+.++|++.+.
T Consensus 23 vY~~Ll~~g~~t~~eia--------~~~gv~~~-~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~~~l~~l~~~~~~~~~ 93 (342)
T 3qph_A 23 TYWTLLVYGPSTAKEIS--------TKSGIPYN-RVYDTISSLKLRGFVTEIEGTPKVYAAYSPRIAFFRFKKELEDIMK 93 (342)
T ss_dssp CSHHHHHHHHHHHSCCS--------SSTTSSSC-SCCHHHHHHHHHTSEEEECCTTCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH--------HHHCcCHH-HHHHHHHHHHHCCCEEEEcCceeEEEEcCHHHHHHHHHHHHHHHHH
Confidence 45566666665555543 23343322 56799999999999987643 579999999999999999998775
Q ss_pred H
Q 016736 375 K 375 (383)
Q Consensus 375 ~ 375 (383)
.
T Consensus 94 ~ 94 (342)
T 3qph_A 94 K 94 (342)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.09 E-value=3.2 Score=32.37 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechhhHH
Q 016736 289 QEVKEVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLKRSN 362 (383)
Q Consensus 289 Qe~KEaiLaY~~Ll~~g---~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~--~~~~a~pl~~A~ 362 (383)
++..+.||. +|...| ++|..+|.. ++|+.-. .|..+|.+|++.|+|.+... |.|.+.|+.++.
T Consensus 9 ~~~~~~IL~--~L~~~~pg~~~t~~eLA~--------~Lgvsr~-tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 9 QDQEQRILK--FLEELGEGKATTAHDLSG--------KLGTPKK-EINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHH--HHHHHCTTCCBCHHHHHH--------HHTCCHH-HHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred hHHHHHHHH--HHHHcCCCCCcCHHHHHH--------HHCcCHH-HHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence 344555663 455666 589887754 5666654 79999999999999976432 789999988754
No 3
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=75.21 E-value=5.5 Score=31.05 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 016736 287 IQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 352 (383)
Q Consensus 287 eeQe~KEaiLaY~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~ 352 (383)
...+.+|.||.| |.++|+.|..+|... +|+.-.=.|...|.+|++.|+|.+...|+
T Consensus 8 ~~~~~~~~IL~~--Lk~~g~~ta~eiA~~--------Lgit~~~aVr~hL~~Le~eGlV~~~~~gR 63 (79)
T 1xmk_A 8 DMAEIKEKICDY--LFNVSDSSALNLAKN--------IGLTKARDINAVLIDMERQGDVYRQGTTP 63 (79)
T ss_dssp HHHHHHHHHHHH--HHHTCCEEHHHHHHH--------HCGGGHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred cchhHHHHHHHH--HHHcCCcCHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCEEecCCCC
Confidence 446889999955 888999998887654 45554337889999999999998665565
No 4
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=69.56 E-value=11 Score=30.90 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHhhcC-C-CCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC-----CC---ceEEechhhHHHHHh
Q 016736 297 SFFILMEQG-K-ATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT-----IG---RYYCVGLKRSNEIIG 366 (383)
Q Consensus 297 aY~~Ll~~g-~-~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~-----~~---~~~a~pl~~A~~~l~ 366 (383)
.|..|+..+ + +|..+|..++. .+- =.|.++|++|++.|+|.+.. .| .|.++|.++..+.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~--------~s~-sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~ 101 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLK--------LDV-STVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQ 101 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHT--------SCH-HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHC--------cCH-HHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHH
Confidence 344555554 4 89999976653 221 25889999999999998853 23 367889999999999
Q ss_pred hhHHHHHHHHhcCC
Q 016736 367 TTTEEMVLKAQQGI 380 (383)
Q Consensus 367 ~~~~~~~~~~~~~~ 380 (383)
+.+++...+..+..
T Consensus 102 ~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 102 KIVQSWADRLGQEL 115 (123)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99888887766543
No 5
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=63.46 E-value=24 Score=28.91 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 016736 318 ELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 359 (383)
Q Consensus 318 ~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~ 359 (383)
+-|.++||+. .-.|.+|+..|++.|+|...++..+.+.+..
T Consensus 41 ~~La~~~~vS-r~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125)
T 3neu_A 41 REMGVKLAVN-PNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecCCEEEEecCc
Confidence 3455678987 4789999999999999988776556565544
No 6
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=63.05 E-value=18 Score=28.77 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 016736 299 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 352 (383)
Q Consensus 299 ~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~ 352 (383)
.+|+.+|++|..+|.+.+.. + .|.. .=.|...|++|++-|+|.+..+|+
T Consensus 17 ~~L~~~~~~t~~el~~~l~~---~-~~~~-~~Tvt~~l~rLe~kGlv~R~~~~r 65 (126)
T 1sd4_A 17 NIIWDKKSVSANEIVVEIQK---Y-KEVS-DKTIRTLITRLYKKEIIKRYKSEN 65 (126)
T ss_dssp HHHHHSSSEEHHHHHHHHHT---T-SCCC-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHhcCCCCHHHHHHHHhh---c-CCCC-hhhHHHHHHHHHHCCceEEEeCCC
Confidence 46777889999999777642 0 0111 124789999999999999877665
No 7
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=62.85 E-value=15 Score=27.99 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechh
Q 016736 293 EVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLK 359 (383)
Q Consensus 293 EaiLaY~~Ll~~g---~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~--~~~~a~pl~ 359 (383)
+.|| .+|...| ++|..+|.. ++|+.-. .|...|.+|++.|+|.+... |.|.+.|.+
T Consensus 17 ~~IL--~~L~~~~~~~~~t~~eLA~--------~Lgvs~~-tV~~~L~~L~~~G~I~~~g~~~~~W~i~~~~ 77 (77)
T 1qgp_A 17 QRIL--KFLEELGEGKATTAHDLSG--------KLGTPKK-EINRVLYSLAKKGKLQKEAGTPPLWKIAVSD 77 (77)
T ss_dssp HHHH--HHHHHHCSSSCEEHHHHHH--------HHCCCHH-HHHHHHHHHHHHTSEEEECSSSCEEEECCCC
T ss_pred HHHH--HHHHHcCCCCCcCHHHHHH--------HHCcCHH-HHHHHHHHHHHCCCEEecCCCCCceEecCCC
Confidence 3455 4566667 689988765 4566654 79999999999999977432 688888763
No 8
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=61.35 E-value=11 Score=30.46 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=31.1
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 016736 319 LIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 359 (383)
Q Consensus 319 ~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~ 359 (383)
-|.++||+. .-.|.+|+..|++.|+|...++..+.+.+..
T Consensus 38 ~La~~~~vS-r~tvr~al~~L~~~Gli~~~~~~G~~V~~~~ 77 (113)
T 3tqn_A 38 KISTEYQIN-PLTVSKAYQSLLDDNVIEKRRGLGMLVKAGA 77 (113)
T ss_dssp HHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECTTH
T ss_pred HHHHHHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEeCCc
Confidence 345678987 5789999999999999988776556666554
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=58.47 E-value=55 Score=24.48 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=50.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--Cc----eEEechhhHHHHHhhhHHHH
Q 016736 299 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GR----YYCVGLKRSNEIIGTTTEEM 372 (383)
Q Consensus 299 ~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~--~~----~~a~pl~~A~~~l~~~~~~~ 372 (383)
..|...|++|..+|.+.+ |+.- =.|...|.+|++.|+|.+... ++ +......+..+.+...++++
T Consensus 27 ~~l~~~~~~s~~ela~~l--------~is~-~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~~~~~ 97 (109)
T 1sfx_A 27 SLLLERGGMRVSEIAREL--------DLSA-RFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGE 97 (109)
T ss_dssp HHHHHHCCBCHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHHHHHH
Confidence 344556889988886654 4432 258899999999999988542 33 23445566777788888888
Q ss_pred HHHHhcC
Q 016736 373 VLKAQQG 379 (383)
Q Consensus 373 ~~~~~~~ 379 (383)
+....+.
T Consensus 98 ~~~~~~~ 104 (109)
T 1sfx_A 98 IERIEKM 104 (109)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8776554
No 10
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=52.17 E-value=21 Score=28.52 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhcCC-C-CHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCC--ceEEec--hhhHHHHH
Q 016736 292 KEVIISFFILMEQGK-A-TRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIG--RYYCVG--LKRSNEII 365 (383)
Q Consensus 292 KEaiLaY~~Ll~~g~-~-T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~--~~~a~p--l~~A~~~l 365 (383)
++.|+ . .+..|. + |..+ |.++||+. .-.|.+|+..|++.|+|....+| .+.+.+ .+++.++.
T Consensus 30 ~~~I~--~-~l~~g~~lps~~e--------La~~lgVS-r~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 30 IEHIF--E-ELDGNEGLLVASK--------IADRVGIT-RSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp HHHHT--T-SSBTTEEEECHHH--------HHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred HHHHH--h-hhcCCCcCCCHHH--------HHHHHCcC-HHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 55665 2 223443 4 6655 45678874 56899999999999999887733 344433 44444443
No 11
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=44.13 E-value=71 Score=26.10 Aligned_cols=39 Identities=13% Similarity=0.000 Sum_probs=30.0
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 016736 318 ELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 357 (383)
Q Consensus 318 ~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~p 357 (383)
+-|.++||++ .-.|.+|+..|+..|+|...++..+.+.+
T Consensus 39 ~~La~~~~vS-r~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 39 RETALQEKIN-PNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 3345678875 56899999999999999887765555555
No 12
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=42.66 E-value=27 Score=28.88 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=32.3
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 359 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~ 359 (383)
|+-|.++||++ .-.|.+|+..|+..|+|...++..+.+.+..
T Consensus 31 e~~La~~~gvS-r~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~ 72 (129)
T 2ek5_A 31 TNELAAFHRIN-PATARNGLTLLVEAGILYKKRGIGMFVSAQA 72 (129)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred HHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEecCCEEEEecCc
Confidence 34456788985 5689999999999999988776556666654
No 13
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=41.27 E-value=99 Score=24.85 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC-----CCc----eEEechh-hH
Q 016736 293 EVIISFFI-LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT-----IGR----YYCVGLK-RS 361 (383)
Q Consensus 293 EaiLaY~~-Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~-----~~~----~~a~pl~-~A 361 (383)
|.-+++.. ++..++.+.-+|...+++.. ..++++ .=.+-.+|.+|++.|+|+... .|. |..++.- ++
T Consensus 21 ~l~~~~IL~lL~~~~~~Gyei~~~l~~~~-~~~~is-~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~ 98 (115)
T 2dql_A 21 EVAICYILYVLLQGESYGTELIQQLETEH-PTYRLS-DTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQ 98 (115)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHHHHC-TTEECC-HHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHc-CCCCCC-cchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHH
Confidence 34444333 44568899999988888652 212111 123567899999999997642 132 6666654 45
Q ss_pred HHHHhhhHHHHHHH
Q 016736 362 NEIIGTTTEEMVLK 375 (383)
Q Consensus 362 ~~~l~~~~~~~~~~ 375 (383)
.+..-+.|++++..
T Consensus 99 l~~~~~~~~~~~~~ 112 (115)
T 2dql_A 99 AEDLARLWQNYIYV 112 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66677889888743
No 14
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=40.78 E-value=37 Score=25.92 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=35.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHH
Q 016736 304 QGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSN 362 (383)
Q Consensus 304 ~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~~A~ 362 (383)
.|++|..+|.++ +|+.-. .|...|..|++.|+|.+.. |.|...|..++.
T Consensus 41 ~~~~~~~eLa~~--------l~is~~-tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~~ 89 (96)
T 1y0u_A 41 DKGRSEEEIMQT--------LSLSKK-QLDYHLKVLEAGFCIERVG-ERWVVTDAGKIV 89 (96)
T ss_dssp HTTCCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEEET-TEEEECTTTCCC
T ss_pred cCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCEEEEC-CEEEECCCchHH
Confidence 577888876543 454432 4889999999999999887 877777754443
No 15
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=39.33 E-value=1.4e+02 Score=23.88 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeee
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR 347 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~ 347 (383)
.|...|++|..+|.+.+ |++-. .|...+.+|++.|+|.+
T Consensus 49 ~l~~~~~~t~~eLa~~l--------~~~~~-tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 49 VIYSTPGISVADLTKRL--------IITGS-SAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHCCCCCHHHHHHHH--------CCCHH-HHHHHHHHHHHCCCEEe
Confidence 34556778988886655 33222 68899999999999988
No 16
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=39.11 E-value=46 Score=25.30 Aligned_cols=57 Identities=21% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhH
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRS 361 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~~A 361 (383)
.|...|+.|..+|...+ .+.+|++- =.|...+++|++.|+|.+..+++-..+-|.++
T Consensus 16 ~l~~~~~~~~~el~~~l----a~~l~is~-~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKV----NAEFPMST-ATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp HHTTCTTCBHHHHHHHH----HTTSCCCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred HHHHcCCcCHHHHHHHH----HHHcCCCH-HHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 34556778888874433 23344432 24788999999999998866555444444433
No 17
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=38.62 E-value=64 Score=25.60 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC---CceEEechh
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI---GRYYCVGLK 359 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~---~~~~a~pl~ 359 (383)
.|...|++|..+|.+.+ |++- =.|..++.+|++.|+|.+..+ ++...+.+.
T Consensus 45 ~l~~~~~~~~~ela~~l--------~~~~-~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT 98 (142)
T 2bv6_A 45 ILWDESPVNVKKVVTEL--------ALDT-GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLT 98 (142)
T ss_dssp HHHHSSEEEHHHHHHHT--------TCCT-TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred HHHHcCCcCHHHHHHHH--------CCCh-hhHHHHHHHHHHCCCEEeecCCCCcceEEEEEC
Confidence 34556778888875544 4332 268999999999999988654 554444443
No 18
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=37.10 E-value=33 Score=30.20 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=32.2
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 358 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl 358 (383)
|+-|.++||+.-. .|-+||..|+..|||+..++..+.+.++
T Consensus 38 e~~La~~lgVSRt-pVREAL~~L~~eGlv~~~~~~G~~V~~~ 78 (218)
T 3sxy_A 38 VRELSEKLGISFT-PVRDALLQLATEGLVKVVPRVGFFVTDV 78 (218)
T ss_dssp HHHHHHHHTCCHH-HHHHHHHHHHHHTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEeCCCceEEcCC
Confidence 4456678898854 8999999999999998877766666554
No 19
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=36.00 E-value=40 Score=29.78 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 358 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl 358 (383)
|+-|.++||++-. .|-+||..|+..|||+..++..+.+.++
T Consensus 42 E~~La~~lgVSRt-pVREAl~~L~~eGlv~~~~~~G~~V~~~ 82 (222)
T 3ihu_A 42 ETDLVAHFGVGRN-SVREALQRLAAEGIVDLQRHRGAVIRRL 82 (222)
T ss_dssp HHHHHHHHTCCHH-HHHHHHHHHHHTTSEEECSTTCEEECCC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEecCCCeEEecC
Confidence 3445677888754 8999999999999998877755555554
No 20
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=35.15 E-value=91 Score=23.79 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 016736 303 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 352 (383)
Q Consensus 303 ~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~ 352 (383)
..|+.|..+|.+. +|+.-. .|...|.+|++.|||.+...|+
T Consensus 33 ~~~~~~~~ela~~--------l~is~~-tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 33 VEGEFSVGELEQQ--------IGIGQP-TLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp HTCCBCHHHHHHH--------HTCCTT-HHHHHHHHHHHTTSEEEECSSS
T ss_pred HhCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 3588888886543 454444 6889999999999998877664
No 21
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=34.94 E-value=60 Score=25.03 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc---eEEechh-----hHHH
Q 016736 292 KEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR---YYCVGLK-----RSNE 363 (383)
Q Consensus 292 KEaiLaY~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~---~~a~pl~-----~A~~ 363 (383)
+..||.+ | ..|+.|..+|.+. +|+.-. .|...|.+|++.|+|.+...|+ |...|-. +...
T Consensus 23 r~~IL~~--L-~~~~~~~~ela~~--------l~is~~-tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 23 RWEILTE--L-GRADQSASSLATR--------LPVSRQ-AIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLE 90 (114)
T ss_dssp HHHHHHH--H-HHSCBCHHHHHHH--------SSSCHH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHH--H-HcCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence 3445553 3 5688898887553 344322 4788999999999998866666 4444322 2233
Q ss_pred HHhhhHHHHHHH
Q 016736 364 IIGTTTEEMVLK 375 (383)
Q Consensus 364 ~l~~~~~~~~~~ 375 (383)
.+...|++.+..
T Consensus 91 ~~~~~~~~~l~~ 102 (114)
T 2oqg_A 91 RIGAEWDRRLAA 102 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344556666544
No 22
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=34.78 E-value=36 Score=30.21 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=40.1
Q ss_pred HHHHH--HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 296 ISFFI--LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 296 LaY~~--Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
++|++ |+..+|.|.=++...|++|.+..+|- +-.=..-++++|++-|+|+...
T Consensus 14 ~~l~VLGlL~e~p~h~Yei~~~i~~~~~~s~gS-iY~~~~~~l~~Le~~GlI~~~~ 68 (180)
T 2rkh_A 14 VRLCALGTIASQPMRYSELAGSVRHFTSRIMGP-SLELMGISIELLRYEGLVEAVD 68 (180)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHHHHHHSC-CGGGTTCCTHHHHHTTSEECCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCCCC-CchhHHHHHHHHHHCCCeeeee
Confidence 45554 55789999999999999999998883 3222222999999999995443
No 23
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.30 E-value=1.4e+02 Score=24.33 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCC-CceE
Q 016736 320 IKEEFGESCNFDVDDAVHKLEKLGIVARDTI-GRYY 354 (383)
Q Consensus 320 l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~-~~~~ 354 (383)
|.++||+.- -.|-+|+..|+..|||...++ |.+.
T Consensus 44 La~~~gVSr-~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 44 FASRIGVNP-NTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp HHHHHTCCH-HHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHCCCH-HHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 567788875 489999999999999987665 4443
No 24
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.71 E-value=1.5e+02 Score=23.31 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
.|...|++|..+|.... |.+-. .|...+.+|++.|+|.+..
T Consensus 41 ~l~~~~~~~~~~la~~l--------~~s~~-tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 41 KIYFEGPKRPGELSVLL--------GVAKS-TVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHCCBCHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHcCCCCHHHHHHHH--------CCCch-hHHHHHHHHHHCCCeeecC
Confidence 34456788998887543 33322 6889999999999998864
No 25
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=33.17 E-value=1.8e+02 Score=22.89 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
.|...|++|..+|.... |.+- =.|..++.+|++.|+|.+..
T Consensus 37 ~l~~~~~~t~~~la~~l--------~~s~-~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 37 RVCENPGIIQEKIAELI--------KVDR-TTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHCcCcCHHHHHHHH--------CCCH-hHHHHHHHHHHHCCCEEeec
Confidence 34556778888876654 3332 26889999999999998864
No 26
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.15 E-value=59 Score=25.48 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCcce-ecHHHHHHHHHHcCeeeecCCCc-eEEechhhHHHHHhh
Q 016736 299 FILMEQGKATRQDLDLRCEELIKEEFGESCN-FDVDDAVHKLEKLGIVARDTIGR-YYCVGLKRSNEIIGT 367 (383)
Q Consensus 299 ~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vd-Fdv~dAl~kL~~lgLv~~~~~~~-~~a~pl~~A~~~l~~ 367 (383)
.+|+..|++|..+|...+.. + ..+. =.|...|++|++.|+|.+..+|+ +..+++-+.-+.+-.
T Consensus 17 ~~l~~~~~~t~~ela~~l~~---~---~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~ 81 (123)
T 1okr_A 17 NIIWMKKYASANNIIEEIQM---Q---KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYK 81 (123)
T ss_dssp HHHHHHSSEEHHHHHHHHHH---H---CCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHhc---c---CCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHH
Confidence 34556788999998777642 1 1111 24788999999999999876554 444666554444333
No 27
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=33.12 E-value=29 Score=29.11 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHH
Q 016736 288 QQEVKEVIISFFILMEQGKATRQD 311 (383)
Q Consensus 288 eQe~KEaiLaY~~Ll~~g~~T~~~ 311 (383)
--++.|+++||+||- |.+|.+|
T Consensus 69 kGd~aEA~iAyAWle--G~is~eE 90 (133)
T 1ztd_A 69 KGDYAEALIAKAWLM--GLISERE 90 (133)
T ss_dssp HHHHHHHHHHHHHHT--TSSCHHH
T ss_pred ccHHHHHHHHHHHHh--ccccHHH
Confidence 457889999999994 7777654
No 28
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=32.75 E-value=37 Score=25.14 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCeeeecCCCc
Q 016736 299 FILMEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARDTIGR 352 (383)
Q Consensus 299 ~~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdF-dv~dAl~kL~~lgLv~~~~~~~ 352 (383)
.+|+..|++|..+|.+.+.. + ..++- .|...|++|++.|+|.+...|+
T Consensus 16 ~~L~~~~~~t~~ei~~~l~~---~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr 64 (82)
T 1p6r_A 16 KVIWKHSSINTNEVIKELSK---T---STWSPKTIQTMLLRLIKKGALNHHKEGR 64 (82)
T ss_dssp HHHHTSSSEEHHHHHHHHHH---H---SCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHcCCCCCHHHHHHHHhh---c---CCccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 35667788999999877652 1 12222 4889999999999999877664
No 29
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=32.11 E-value=24 Score=27.60 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=36.1
Q ss_pred HhhcC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeec----CC-CceE---EechhhHHHHHhhhHHH
Q 016736 301 LMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARD----TI-GRYY---CVGLKRSNEIIGTTTEE 371 (383)
Q Consensus 301 Ll~~g-~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~----~~-~~~~---a~pl~~A~~~l~~~~~~ 371 (383)
|..+| ++|..+| .+.+|++-. .|.+||.+|++.|+|... +. |.+. .+..++..+++..+-+.
T Consensus 27 l~~~g~~~s~~eL--------a~~lgvs~~-tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~~~~~~~ 97 (110)
T 1q1h_A 27 LLDKGTEMTDEEI--------ANQLNIKVN-DVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRL 97 (110)
T ss_dssp HHHHCSCBCHHHH--------HHTTTSCHH-HHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC---------
T ss_pred HHHcCCCCCHHHH--------HHHHCcCHH-HHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHHHHHHHH
Confidence 44566 5776664 467787654 799999999999999886 43 4333 35666666666665444
Q ss_pred HHHH
Q 016736 372 MVLK 375 (383)
Q Consensus 372 ~~~~ 375 (383)
++++
T Consensus 98 ~~e~ 101 (110)
T 1q1h_A 98 ILDK 101 (110)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 30
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=31.90 E-value=61 Score=24.67 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHHHHH
Q 016736 307 ATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEEMVL 374 (383)
Q Consensus 307 ~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~~A~~~l~~~~~~~~~ 374 (383)
+|..+|.+.. |.+- =.|...+.+|++.|+|....+++...+-|-+.-..+-+.+.+.+.
T Consensus 31 ~t~~eLa~~l--------~i~~-~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~~~ 89 (95)
T 2qvo_A 31 VYIQYIASKV--------NSPH-SYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIID 89 (95)
T ss_dssp EEHHHHHHHS--------SSCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHH--------CcCH-HHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHHHH
Confidence 7887776542 3332 357889999999999954445776666665555555555554443
No 31
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.57 E-value=46 Score=30.02 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 359 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~ 359 (383)
|+-|.++||+.- -.|-+||..|+..|||...++..+.+.++.
T Consensus 54 e~~La~~lgVSR-tpVREAL~~L~~eGlv~~~~~~G~~V~~~~ 95 (239)
T 2hs5_A 54 EPDICAALDVSR-NTVREAFQILIEDRLVAHELNRGVFVRVPT 95 (239)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHHTTSEEEETTTEEEECCCC
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEeCCCeeEEeCCC
Confidence 445667889874 489999999999999988877666666554
No 32
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=31.43 E-value=39 Score=29.99 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 357 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~p 357 (383)
|+-|.++||++ .-.|-+||..|+..|||...++....+.+
T Consensus 34 E~eLa~~~gVS-R~tVReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 34 ERELSELIGVT-RTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEecCCCcEeeC
Confidence 34455678986 56899999999999999887764444444
No 33
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=29.10 E-value=2e+02 Score=22.28 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC---CCceEEechhh
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT---IGRYYCVGLKR 360 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~---~~~~~a~pl~~ 360 (383)
.|...|++|..+|.+.+ |.+- =.|...+.+|++.|+|.+.. +++...+.+.+
T Consensus 37 ~l~~~~~~~~~ela~~l--------~~s~-~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~ 91 (138)
T 3bpv_A 37 RIHREPGIKQDELATFF--------HVDK-GTIARTLRRLEESGFIEREQDPENRRRYILEVTR 91 (138)
T ss_dssp HHHHSTTCBHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred HHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEeecCCCCceeEEeeECH
Confidence 34456789998887654 3332 26889999999999998853 24444444433
No 34
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=28.92 E-value=89 Score=26.85 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHHHHHH
Q 016736 331 DVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEEMVLK 375 (383)
Q Consensus 331 dv~dAl~kL~~lgLv~~~~~~~~~a~pl~~A~~~l~~~~~~~~~~ 375 (383)
.|-.||+.|+..|||...+.+...+.|.. .+.+++.-.+++.+
T Consensus 97 tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~--~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 97 IIRKALQQLEAAGFVEKVPGKGRVITPKG--RSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHHHHHTTSEEEETTTEEEECHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeCCCceEECCCC--HHHHHHHHHHHHHH
Confidence 58899999999999988766455555533 34455555555543
No 35
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=27.96 E-value=61 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 359 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~ 359 (383)
|+-|.++||+.- -.|-+||..|+..|||...+.+...+.++.
T Consensus 52 e~~La~~lgVSr-~~VReAL~~L~~~Glv~~~~~~G~~V~~~~ 93 (237)
T 3c7j_A 52 QQELATLFGVSR-MPVREALRQLEAQSLLRVETHKGAVVAPLI 93 (237)
T ss_dssp HHHHHHHHTSCH-HHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEeCCCceEEecCC
Confidence 334557788875 489999999999999998877666666554
No 36
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=26.91 E-value=1.1e+02 Score=22.55 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=39.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC---CCceEEechh-hH---HHHHhhhHHHHH
Q 016736 301 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT---IGRYYCVGLK-RS---NEIIGTTTEEMV 373 (383)
Q Consensus 301 Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~---~~~~~a~pl~-~A---~~~l~~~~~~~~ 373 (383)
|...|++|..+|.+.+ |..-. .+...|.+|++.|+|.+.. +++...+-+. +. ...+-..+.+++
T Consensus 25 L~~~~~~~~~ela~~l--------~is~~-tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~~~~~~ 95 (100)
T 1ub9_A 25 LLPRRKAPFSQIQKVL--------DLTPG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVI 95 (100)
T ss_dssp HHHHSEEEHHHHHHHT--------TCCHH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHH--------CcCHH-HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 3456778888876644 43332 4788999999999998644 4443322222 22 234444555555
Q ss_pred HHH
Q 016736 374 LKA 376 (383)
Q Consensus 374 ~~~ 376 (383)
..+
T Consensus 96 ~~~ 98 (100)
T 1ub9_A 96 DGL 98 (100)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 37
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=26.50 E-value=2.3e+02 Score=22.02 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
.|...|+.|..+|.+. +|.+-. .|...+++|++.|+|.+..
T Consensus 42 ~l~~~~~~~~~~la~~--------l~~~~~-tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 42 SIRCAACITPVELKKV--------LSVDLG-ALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHSSBCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcCCCCHHHHHHH--------HCCChH-HHHHHHHHHHHCCCEEecC
Confidence 3455677888887633 344322 6788999999999998854
No 38
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=26.28 E-value=2.2e+02 Score=22.47 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
.|...|++|..+|...+ |++- =.|...+.+|++.|+|.+..
T Consensus 45 ~l~~~~~~t~~eLa~~l--------~~~~-~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 45 LIDEQRGLNLQDLGRQM--------CRDK-ALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHTTTCCHHHHHHHH--------C----CHHHHHHHHHHHTTSEEC--
T ss_pred HHHhCCCcCHHHHHHHh--------CCCH-HHHHHHHHHHHHCCCEeecc
Confidence 34456789998886544 3322 25789999999999998865
No 39
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=25.39 E-value=1.9e+02 Score=24.17 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=47.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC----CC----ceEEech-hhHHHHHhhhHHHHH
Q 016736 303 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT----IG----RYYCVGL-KRSNEIIGTTTEEMV 373 (383)
Q Consensus 303 ~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~----~~----~~~a~pl-~~A~~~l~~~~~~~~ 373 (383)
..++++.-+|.+.+++.....+++. .=.+-.+|.+|++.|+|++.. .| .|..+|. .++++.....|+++.
T Consensus 51 ~~~~~~gyeI~~~l~~~~~~~~~is-~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~~~~ 129 (145)
T 1xma_A 51 IEGDSYGYEISKNIRIKTDELYVIK-ETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWELTK 129 (145)
T ss_dssp HHCCEEHHHHHHHHHHHHTTSCCCC-HHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHhhCCccCcC-hhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 4588999999888877654333322 235678999999999997753 23 2444454 234455666787776
Q ss_pred HHHh
Q 016736 374 LKAQ 377 (383)
Q Consensus 374 ~~~~ 377 (383)
....
T Consensus 130 ~~i~ 133 (145)
T 1xma_A 130 KVIN 133 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 40
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=25.38 E-value=2.5e+02 Score=22.18 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=44.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCC-c--cee--cHHHHHHHHHHcCeeeecC---CC----ceEEechhh-HHHHHhhhH
Q 016736 303 EQGKATRQDLDLRCEELIKEEFGE-S--CNF--DVDDAVHKLEKLGIVARDT---IG----RYYCVGLKR-SNEIIGTTT 369 (383)
Q Consensus 303 ~~g~~T~~~Ld~~~E~~l~~~f~~-~--vdF--dv~dAl~kL~~lgLv~~~~---~~----~~~a~pl~~-A~~~l~~~~ 369 (383)
..++.+.-+|...+++ .|. . ++- .+-.+|.+|++.|+|+... +| .|..+|.-+ +.......|
T Consensus 23 ~~~~~~gyel~~~l~~-----~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~~ 97 (118)
T 2esh_A 23 AEKPSHGYELAERLAE-----FGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSL 97 (118)
T ss_dssp HHSCBCHHHHHHHHHT-----TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHH-----hCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHHH
Confidence 4588999999888876 232 2 443 6788999999999998753 23 245555432 334455556
Q ss_pred HHHHHH
Q 016736 370 EEMVLK 375 (383)
Q Consensus 370 ~~~~~~ 375 (383)
.++...
T Consensus 98 ~~~~~~ 103 (118)
T 2esh_A 98 EDMKRR 103 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 41
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=24.65 E-value=64 Score=29.14 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=30.2
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 358 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl 358 (383)
|+-|.++||+. .-.|.+|+..|++.|+|.+..+....+.+.
T Consensus 32 e~~La~~~~vS-r~tvr~Al~~L~~~g~i~~~~g~G~~V~~~ 72 (239)
T 3bwg_A 32 LETLMAQFEVS-KSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEeCCceEEEecC
Confidence 44456788984 568999999999999998876544444443
No 42
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=24.18 E-value=2.7e+02 Score=22.11 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCeeeecC----CCc----eEEech
Q 016736 290 EVKEVIISFFIL--MEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARDT----IGR----YYCVGL 358 (383)
Q Consensus 290 e~KEaiLaY~~L--l~~g~~T~~~Ld~~~E~~l~~~f~~~vdF-dv~dAl~kL~~lgLv~~~~----~~~----~~a~pl 358 (383)
++.--.|-+++| +..|+.+.-+|.+.+++.....+ .++- -+-.+|.+|++-|+|+... .|. |..+|-
T Consensus 7 ~~~~g~l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~--~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~ 84 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEM--ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHTTTCC--CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHH
T ss_pred HHHhchHHHHHHHHHHhCCCCHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHH
Confidence 344444555553 46789999999999887653322 2222 2678899999999998752 232 444543
Q ss_pred h-hHHHHHhhhHHHHHHH
Q 016736 359 K-RSNEIIGTTTEEMVLK 375 (383)
Q Consensus 359 ~-~A~~~l~~~~~~~~~~ 375 (383)
- ++++...+.|+++...
T Consensus 85 G~~~l~~~~~~~~~~~~~ 102 (116)
T 3f8b_A 85 GHENMRLAFESWSRVDKI 102 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 3344456678877544
No 43
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=24.15 E-value=51 Score=29.42 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCeeee--cCC--CceEEechh
Q 016736 319 LIKEEFGESCNFDVDDAVHKLEKLGIVAR--DTI--GRYYCVGLK 359 (383)
Q Consensus 319 ~l~~~f~~~vdFdv~dAl~kL~~lgLv~~--~~~--~~~~a~pl~ 359 (383)
=|.++||++-. .|-+||..|+..|||.. .++ +...+.++.
T Consensus 33 ~La~~lgVSRt-pVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~ 76 (239)
T 2di3_A 33 ALSETLGVSRS-SLREALRVLEALGTISTATGSGPRSGTIITAAP 76 (239)
T ss_dssp HHHHHHTCCHH-HHHHHHHHHHHHTSEECCSTTSGGGCCEECCCC
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHCCCeEeecccCCCCCceeeCCc
Confidence 34567888754 79999999999999988 666 445555443
No 44
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=23.99 E-value=3e+02 Score=22.53 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=29.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 301 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 301 Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
|...|++|..+|.+.+ |.+-. .|...+++|++.|+|.+..
T Consensus 54 L~~~~~~t~~eLa~~l--------~is~~-tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 54 LSNHGPINLATLATLL--------GVQPS-ATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp HHHHCSEEHHHHHHHH--------TSCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCCCHHHHHHHh--------CCCHH-HHHHHHHHHHHCCCEEecc
Confidence 4456778888886654 33322 5788999999999998854
No 45
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=23.46 E-value=66 Score=26.25 Aligned_cols=39 Identities=5% Similarity=-0.052 Sum_probs=28.4
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 016736 320 IKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 359 (383)
Q Consensus 320 l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~ 359 (383)
|.++||+. .-.|.+|+..|+..|+|...++..+.+.+..
T Consensus 41 La~~~~vS-r~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~ 79 (126)
T 3ic7_A 41 YASIVEVN-ANTVMRSYEYLQSQEVIYNKRGIGFFVASGA 79 (126)
T ss_dssp TTTCC-CC-SGGGHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred HHHHHCcC-HHHHHHHHHHHHHCCcEEEEcCCccEEccCc
Confidence 34567774 3579999999999999988776556565554
No 46
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=23.20 E-value=1e+02 Score=25.51 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHH--HHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHH
Q 016736 306 KATRQDLDLRCEELI--KEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEE 371 (383)
Q Consensus 306 ~~T~~~Ld~~~E~~l--~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl~~A~~~l~~~~~~ 371 (383)
+.+.++|...++..= .+.++..+.|.+++-... .--.++..+++..+.=+|++++++++...|+.
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~-~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~ 100 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNE-YYVKVIEDSTNEVIREIPPKRWLDFYAAMTEF 100 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTE-EEEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCc-EEEEEEECCCCcEEEeCChHHHHHHHHHHHHh
Confidence 378899987776432 234688999999985321 11124555555678999999999999988864
No 47
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.05 E-value=2.8e+02 Score=21.87 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 016736 300 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 349 (383)
Q Consensus 300 ~Ll~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~ 349 (383)
.|...|++|..+|...+ |+.- =.|..++.+|++.|+|.+..
T Consensus 48 ~l~~~~~~t~~ela~~l--------~~~~-~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAAL--------QMKR-QYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhCCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCeeecC
Confidence 34456778888876554 3332 26889999999999998865
No 48
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=22.51 E-value=92 Score=28.09 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=30.8
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 016736 317 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 358 (383)
Q Consensus 317 E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl 358 (383)
|+-|.++||+.- -.|-+|+..|++.|+|.+..+....+.+.
T Consensus 36 e~~La~~~~vSr-~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 36 ETALQEIYSSSR-TTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCcCH-HHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 455667899864 47999999999999998876544444443
No 49
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.11 E-value=76 Score=25.56 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=35.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 016736 302 MEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 358 (383)
Q Consensus 302 l~~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~~~a~pl 358 (383)
...|++|..+|... +|++ .=.|..++.+|++.|+|.+...+.+...|-
T Consensus 18 ~~~~~~~~~ela~~--------l~vs-~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~ 65 (142)
T 1on2_A 18 EEKGYARVSDIAEA--------LAVH-PSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 (142)
T ss_dssp HHHSSCCHHHHHHH--------HTSC-HHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred hhcCCCCHHHHHHH--------hCCC-HHHHHHHHHHHHHCCCEEEeeCceEEEchh
Confidence 34577888887654 3444 235788999999999999987777776664
No 50
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.70 E-value=72 Score=24.34 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 016736 305 GKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 352 (383)
Q Consensus 305 g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~ 352 (383)
++.|.+||. +.||++ .--|..-|..|++-|+|.++.+|+
T Consensus 23 ~~psv~EIa--------~~lgvS-~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 23 APVKTRDIA--------DAAGLS-IYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp SCEEHHHHH--------HHHTCC-HHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCcCHHHHH--------HHHCCC-HHHHHHHHHHHHHCCcEEecCCCC
Confidence 567877764 457775 566999999999999999987653
No 51
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.56 E-value=1.3e+02 Score=26.00 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC
Q 016736 287 IQQEVKEVIISFFILMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI 350 (383)
Q Consensus 287 eeQe~KEaiLaY~~Ll~~g-~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~ 350 (383)
.|+++.|.|+.| +..+| +.|..||. +.+|.+-. .+.+.|..|++.|++.++..
T Consensus 6 ~q~~il~~I~~~--~~~~g~~~s~~eia--------~~lgl~~~-tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 6 RQRKVLLFIEEF--IEKNGYPPSVREIA--------RRFRITPR-GALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp HHHHHHHHHHHH--HHHHSSCCCHHHHH--------HHHTSCHH-HHHHHHHHHHHTTSEECC--
T ss_pred HHHHHHHHHHHH--HHHhCCCCCHHHHH--------HHcCCCcH-HHHHHHHHHHHCCCEEecCC
Confidence 466677776654 33455 57877764 45677755 79999999999999988754
No 52
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=20.45 E-value=1.3e+02 Score=23.14 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=29.5
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 016736 304 QGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 352 (383)
Q Consensus 304 ~g~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~~~ 352 (383)
.|+.|..+|. +.+|+.- =.|...|..|++.|+|.+...|+
T Consensus 37 ~~~~~~~ela--------~~l~is~-stvs~~L~~L~~~Glv~~~~~gr 76 (106)
T 1r1u_A 37 VSEASVGHIS--------HQLNLSQ-SNVSHQLKLLKSVHLVKAKRQGQ 76 (106)
T ss_dssp HCCBCHHHHH--------HHHTCCH-HHHHHHHHHHHHTTSEEEEEETT
T ss_pred hCCCCHHHHH--------HHHCcCH-HHHHHHHHHHHHCCCeEEEEeCC
Confidence 6778887754 3445442 25788999999999998877776
No 53
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.04 E-value=1.2e+02 Score=23.86 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHhhcC--CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC---CceEEechhh
Q 016736 300 ILMEQG--KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI---GRYYCVGLKR 360 (383)
Q Consensus 300 ~Ll~~g--~~T~~~Ld~~~E~~l~~~f~~~vdFdv~dAl~kL~~lgLv~~~~~---~~~~a~pl~~ 360 (383)
.|...+ ++|..+|...+ |++- =.|..++.+|++.|+|.+..+ ++...+.+.+
T Consensus 42 ~l~~~~~~~~~~~ela~~l--------~~~~-~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 42 YLSRNKNKEVLQRDLESEF--------SIKS-STATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp HHHHTTTSCCBHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred HHHHCCCCCcCHHHHHHHH--------CCCc-chHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 344455 68999886543 3332 268899999999999988642 4444444443
Done!