BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016737
         (383 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
           Aeolicus
          Length = 216

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 104 DFCSRPILDIRGKKIWELVVCDG---SLSLQYTKYFPNNVIN 142
           +F  R  L+++ K + ELVV  G    LS  + KYFPN VIN
Sbjct: 67  EFEERXALELKKKGV-ELVVLAGFXRILSHNFLKYFPNKVIN 107


>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
          Length = 426

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 29/138 (21%)

Query: 126 GSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDI 185
           G   L+  + +  +++        ++A C    VP+ +  ++F S    +I    +EL  
Sbjct: 28  GHYELKLAEGYETHLVGIKNNNNEVIAACLLTAVPVMKVFKYFYSNRGPVIDYENQELVH 87

Query: 186 -------KPIPSKRCLSLLL----------------------WLEERYETVYTRHPGFQK 216
                  K +   RCL L +                      W  ++   +   H GF K
Sbjct: 88  FFFNELSKYVKKHRCLYLHIDPYLPYQYLNHDGEITGNAGNDWFFDKMSNLGFEHTGFHK 147

Query: 217 GSKPLLALDNPFPMELPD 234
           G  P+L +     ++L D
Sbjct: 148 GFDPVLQIRYHSVLDLKD 165


>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
           Form
 pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
           Form
 pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
           Form
 pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Cu(i)
 pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Cu(i)
 pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Cu(i)
          Length = 692

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 480 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 525


>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
          Length = 692

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 480 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 525


>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
          Length = 660

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 468 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 513


>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
          Length = 660

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 468 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 513


>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
          Length = 663

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 467 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 512


>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
           Copper Amine Oxidase Of Hansenula Polymorpha Expressed
           In Escherichia Coli
 pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
           Copper Amine Oxidase Of Hansenula Polymorpha Expressed
           In Escherichia Coli
 pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
           Copper Amine Oxidase Of Hansenula Polymorpha Expressed
           In Escherichia Coli
          Length = 656

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 464 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 509


>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
          Length = 655

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 463 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 508


>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
          Length = 657

 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 223 ALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSLESKFVFGASLDL 270
           A  +P+P+  P+N++G+ +   +  F  V++ +++ ES    G S D+
Sbjct: 464 AKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYES--ATGRSWDI 509


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,517,175
Number of Sequences: 62578
Number of extensions: 402871
Number of successful extensions: 747
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 10
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)