BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016737
         (383 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q07010|HPRT_TRYBB Hypoxanthine-guanine phosphoribosyltransferase OS=Trypanosoma
           brucei brucei GN=HGPRT PE=3 SV=1
          Length = 210

 Score = 35.0 bits (79), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 31/153 (20%)

Query: 142 NSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKP-----IPSKRCLSL 196
            S      +V I  D GVP   ++ F R+      TK+C  +D+K      I  K  L L
Sbjct: 55  GSFVFTADMVRILGDFGVPT--RVEFLRASSYGHDTKSCGRVDVKADGLCDIRGKHVLVL 112

Query: 197 ------LLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSA 250
                  L L E  +++    P      K L+A+D P          G +    ++PF+A
Sbjct: 113 EDILDTALTLREVVDSLKKSEPA---SIKTLVAIDKP----------GGR----KIPFTA 155

Query: 251 VQEEVSSLESKFVFGASLDLDLLGIEVDDKTLI 283
            +  V+ + + FV G  LD D    EV D  ++
Sbjct: 156 -EYVVADVPNVFVVGYGLDYDQSYREVRDVVIL 187


>sp|A1JHR0|ASNA_YERE8 Aspartate--ammonia ligase OS=Yersinia enterocolitica serotype O:8 /
           biotype 1B (strain 8081) GN=asnA PE=3 SV=1
          Length = 330

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 119 WELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ 171
           WE V+ DG  +L Y K   N +  +I   EA ++   D+   +PE+I F  S+
Sbjct: 119 WERVMGDGERNLAYLKSTVNKIYAAIKETEAAISAEFDIKPFLPEQIHFIHSE 171


>sp|A8F962|SYC_BACP2 Cysteine--tRNA ligase OS=Bacillus pumilus (strain SAFR-032) GN=cysS
           PE=3 SV=1
          Length = 466

 Score = 32.3 bits (72), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 130 LQYTKYFPNNVINSITLKEAIVAICDDLGVPIPE-KIRFFRSQMQTIITKACKELDIKPI 188
           L+Y+ Y  N V N   + + ++   ++LG  +P    RF ++  + +    CK+ D+ P 
Sbjct: 55  LEYSGYDVNFVSNFTDVDDKLIKAANELGEDVPTIADRFIQAYFEDVSALGCKKADLHPR 114

Query: 189 PSKRCLSLLLWLEERYETVY 208
            ++    ++ ++E   E  Y
Sbjct: 115 VTENMDDIIAFIETLIEKGY 134


>sp|Q9UL58|ZN215_HUMAN Zinc finger protein 215 OS=Homo sapiens GN=ZNF215 PE=2 SV=2
          Length = 517

 Score = 32.3 bits (72), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 37/158 (23%)

Query: 23  KPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEADAEIEADDVE--D 80
           +P+SK  +++KP N+S              R +  V  + +S  +E +  +E  D E   
Sbjct: 2   QPLSKLMAISKPRNLS-------------LREQREVLRADMSWQQETNPVVETHDSEASR 48

Query: 81  DPTQELSYLDEETDPESITE-WELDFC---SRPILDIRGKKIWELVVCDGSLS------- 129
              +   YL      E++++ WEL  C    RP +  + K+I EL+V +  L+       
Sbjct: 49  QKFRHFQYLKVSGPHEALSQLWEL--CLQWLRPEIHTK-KQIIELLVLEQFLAILPEEVR 105

Query: 130 ----LQYTKYFPNNVINSITLKEAIVAICDDLGVPIPE 163
               LQ+    PNN  + +TL E ++ + +D  +P  +
Sbjct: 106 TWVNLQH----PNNSKDMVTLIEDVIEMLEDEDMPCKD 139


>sp|Q6Q0N0|CSTN1_RAT Calsyntenin-1 OS=Rattus norvegicus GN=Clstn1 PE=2 SV=1
          Length = 952

 Score = 32.0 bits (71), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 31/74 (41%)

Query: 199 WLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAVQEEVSSL 258
           WLE  Y  + T +        PL+ALD   P+     + G K     +PF AV  + S+ 
Sbjct: 37  WLEPTYHGIVTENDNTVLLDPPLIALDKDSPLRFAGEICGFKIHGQNVPFDAVVVDKSTG 96

Query: 259 ESKFVFGASLDLDL 272
           E        LD +L
Sbjct: 97  EGIIRSKEKLDCEL 110


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,035,623
Number of Sequences: 539616
Number of extensions: 6423246
Number of successful extensions: 19299
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 19243
Number of HSP's gapped (non-prelim): 54
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)