Query 016739
Match_columns 383
No_of_seqs 186 out of 1735
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 02:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 1.6E-51 5.4E-56 405.6 25.6 328 42-382 7-387 (396)
2 2qfz_A TBC1 domain family memb 100.0 5E-51 1.7E-55 396.1 28.5 288 40-382 23-341 (345)
3 2qq8_A TBC1 domain family memb 100.0 7E-51 2.4E-55 393.0 26.1 283 42-374 20-309 (334)
4 3qye_A TBC1 domain family memb 100.0 3.5E-48 1.2E-52 374.0 26.6 269 42-374 29-308 (331)
5 4hl4_A TBC1 domain family memb 100.0 3.6E-48 1.2E-52 367.5 24.8 264 43-379 20-291 (292)
6 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.1E-48 7.3E-53 372.2 22.0 259 44-373 6-274 (310)
7 3qwl_A TBC1 domain family memb 100.0 1.9E-37 6.4E-42 292.3 27.3 253 45-382 28-291 (294)
8 4g26_A Pentatricopeptide repea 40.0 97 0.0033 30.3 8.9 49 232-280 126-174 (501)
9 2kvs_A Uncharacterized protein 27.5 45 0.0015 24.1 2.9 37 343-379 38-74 (80)
10 4g26_A Pentatricopeptide repea 19.6 3E+02 0.01 26.6 8.3 49 232-280 91-139 (501)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.6e-51 Score=405.60 Aligned_cols=328 Identities=22% Similarity=0.382 Sum_probs=237.7
Q ss_pred cHHHHHHhhccCCCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHH---HhhcCCCCCCccch
Q 016739 42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRD---SLDQGWHVDGAISD 118 (383)
Q Consensus 42 ~~~~W~~~l~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 118 (383)
..++|.+++.+...++..+ +|.++++|||+.+|+.||+.|+|+.+.+.+.+. ..+.+.+.. +.+..... ...
T Consensus 7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~-~~l~~~~~~Y~~l~~~~~~~-~~~-- 81 (396)
T 1fkm_A 7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQE-GFLQRKRKEYRDSLKHTFSD-QHS-- 81 (396)
T ss_dssp HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHH-HHHHHHHHHHHHHHHHTSSS-SCS--
T ss_pred HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHH-HHHHHHHHHHHHHHHHHhhc-cCc--
Confidence 3468999999876577777 667788999999999999999999887654322 122222222 22221110 011
Q ss_pred HHHHHHhhhHhHHhhhhccCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcC------------
Q 016739 119 KKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE------------ 186 (383)
Q Consensus 119 ~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~------------ 186 (383)
...+..+||++||.||+|++++|+.+.+++.|.|||.+|+.+||++|||||||+|++||++++.
T Consensus 82 ----~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~ 157 (396)
T 1fkm_A 82 ----RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDV 157 (396)
T ss_dssp ----THHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGT
T ss_pred ----ccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccc
Confidence 1234668999999999999999999999999999999999999999999999999999998752
Q ss_pred ------C----------HHHHHHHHHHHHHhhhhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHH
Q 016739 187 ------N----------EADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFR 250 (383)
Q Consensus 187 ------~----------E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~ 250 (383)
+ |++|||||+++|+++.++|.. +++++...+..++.+|+..+|+|++||++.|+.+.+|+++
T Consensus 158 ~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 158 EIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp TTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 1 999999999999998777653 4679999999999999999999999999999999999999
Q ss_pred HHHHhcCcCCChhHHHHHHHHHhhccCCCcchhhhcccCCCCCCcccchhhhhhhc-------------hhhhhhhhcCC
Q 016739 251 MLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCG-------------KFERKNVKTGL 317 (383)
Q Consensus 251 Wf~tlF~~~l~~~~vlriWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 317 (383)
||+|+|+++||+++++||||.+|++|......+.....+..++++....+....++ +-..++++.++
T Consensus 236 W~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 315 (396)
T 1fkm_A 236 WMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED 315 (396)
T ss_dssp HHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988211100011111111111100000000000 00001111110
Q ss_pred CC-----CCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHHHhcccCC----CCHHHHHHHHHHHHHHHHhhhc
Q 016739 318 PD-----KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGN----LDAKKACNEALKIQKKYLSKSK 382 (383)
Q Consensus 318 ~~-----~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~~~~l~~~----~d~~~~l~~a~~l~~~y~~~~~ 382 (383)
.+ +..+|++|+|+|+|...|+.||+. |++++++++++++.. .|++.++++|..++..|....+
T Consensus 316 ~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~--df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~ 387 (396)
T 1fkm_A 316 SGKMRQSSLNEFHVFVCAAFLIKWSDQLMEM--DFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATS 387 (396)
T ss_dssp -------CHHHHHHHHHHHHHHHTHHHHTTC--CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC----
T ss_pred chhccccchHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHH
Confidence 00 224689999999999999999974 999999999999964 5999999999999999977654
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=5e-51 Score=396.06 Aligned_cols=288 Identities=20% Similarity=0.395 Sum_probs=234.1
Q ss_pred CCcHHHHHHhhccCCCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHH---HHhhcCCCCCCcc
Q 016739 40 TLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRR---DSLDQGWHVDGAI 116 (383)
Q Consensus 40 ~l~~~~W~~~l~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ 116 (383)
.-..++|.+++++. .++..+ +|.++++|||+.+|+.||+.++|+.|.+..... ..+.+.+. .+.+.......
T Consensus 23 ~~r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~-~~l~~~~~~Y~~l~~~~~~~~~-- 97 (345)
T 2qfz_A 23 ASRLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRP-ATLQRKQKEYFAFIEHYYDSRN-- 97 (345)
T ss_dssp -CHHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHH-HHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcCCC--
Confidence 34567999999874 367666 667788999999999999999999887643221 12222222 22222211100
Q ss_pred chHHHHHHhhhHhHHhhhhccCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcC----------
Q 016739 117 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE---------- 186 (383)
Q Consensus 117 ~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~---------- 186 (383)
.....+..+||++||.||+|+ ++|+.+..++.|.|||.+|+.+||++|||||||+|+|||++++.
T Consensus 98 ----~~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~ 172 (345)
T 2qfz_A 98 ----DEVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVD 172 (345)
T ss_dssp -------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----
T ss_pred ----ccchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhccccccc
Confidence 111234679999999999999 99999989999999999999999999999999999999998874
Q ss_pred --------------CHHHHHHHHHHHHHhhhhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHH
Q 016739 187 --------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRML 252 (383)
Q Consensus 187 --------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf 252 (383)
+|++|||||+++|+++.++|. .++++++..+..++.+|+..+|+|++||.+.|+++.+|+++||
T Consensus 173 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~ 250 (345)
T 2qfz_A 173 TVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWM 250 (345)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 299999999999999877665 3467999999999999999999999999999999999999999
Q ss_pred HHhcCcCCChhHHHHHHHHHhhccCCCcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHH
Q 016739 253 MVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASV 332 (383)
Q Consensus 253 ~tlF~~~l~~~~vlriWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ai 332 (383)
+|+|+++||+++++||||.+|++|... ..|++|+|+|+
T Consensus 251 ~~lF~~~~p~~~~lrlWD~~l~~g~~~------------------------------------------~~~~~~v~~Ai 288 (345)
T 2qfz_A 251 NNLLMREVPLRCTIRLWDTYQSEPDGF------------------------------------------SHFHLYVCAAF 288 (345)
T ss_dssp HTTTTTTSCHHHHHHHHHHHTTSTTTT------------------------------------------TTHHHHHHHHH
T ss_pred HHHHcccCCHHHHHHHHHHHHhCCCCh------------------------------------------hHHHHHHHHHH
Confidence 999999999999999999999987542 22688999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcccCC----CCHHHHHHHHHHHHHHHHhhhc
Q 016739 333 LETKNKKLLREAKGLDDVVKILADITGN----LDAKKACNEALKIQKKYLSKSK 382 (383)
Q Consensus 333 l~~~~~~il~~~~~~~~~~~~~~~l~~~----~d~~~~l~~a~~l~~~y~~~~~ 382 (383)
|...+++||. ..+++++++++++++.. .|++.+++.|..+...|....+
T Consensus 289 L~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~ 341 (345)
T 2qfz_A 289 LVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFADAPN 341 (345)
T ss_dssp HHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999997 46999999999999965 3899999999999999876543
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-51 Score=392.97 Aligned_cols=283 Identities=19% Similarity=0.279 Sum_probs=225.3
Q ss_pred cHHHHH-HhhccCCCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhhcCCCCC-C-ccch
Q 016739 42 SARRWH-AAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVD-G-AISD 118 (383)
Q Consensus 42 ~~~~W~-~~l~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~ 118 (383)
...+|. +++.+.......+.++.++++|||+.+|+.||+.++|+.. ..+.+.+..+.++.+..+....... . ...+
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~-~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNEL-NITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTT-CCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHhHHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 456898 5777755543344588899999999999999999999753 3444444443332222111100000 0 0000
Q ss_pred --HHHHHHhhhHhHHhhhhccCCCCCcCCCCh-hhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcCCHHHHHHHH
Q 016739 119 --KKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCF 195 (383)
Q Consensus 119 --~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~-~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~~E~~aF~~f 195 (383)
.......+..+||++||.||+|++++|+.+ .+++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~ 177 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAF 177 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHH
Confidence 001112346789999999999999999875 5799999999999999999999999999999999888 699999999
Q ss_pred HHHHHhhhh-cccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHhh
Q 016739 196 EHTMRRLRE-NFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWA 274 (383)
Q Consensus 196 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l~ 274 (383)
+++|++..+ .|+ ..+.+++...+..++.+|+..+|+||+||.+.|+.+.+|+++||+|+|+++||++.++||||++|+
T Consensus 178 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 178 SNLLNKPCQMAFF-RVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHTSHHHHHHH-SSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHhcc-CCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999998643 333 345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 016739 275 MEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKIL 354 (383)
Q Consensus 275 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~~ 354 (383)
+|. .|++++|+|||...++.|++. +++++++++
T Consensus 257 eg~---------------------------------------------~~l~~valaiL~~~~~~Ll~~--d~~~il~~L 289 (334)
T 2qq8_A 257 DGE---------------------------------------------EFLFRTALGILKLFEDILTKM--DFIHMAQFL 289 (334)
T ss_dssp HCH---------------------------------------------HHHHHHHHHHHHHTHHHHHTC--CHHHHHHHH
T ss_pred cCC---------------------------------------------HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 874 278999999999999999985 899999999
Q ss_pred hcccCCCCHHHHHHHHHHHH
Q 016739 355 ADITGNLDAKKACNEALKIQ 374 (383)
Q Consensus 355 ~~l~~~~d~~~~l~~a~~l~ 374 (383)
++++..+|++.+++.|..+.
T Consensus 290 ~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 290 TRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp HSCCTTCCHHHHHHHHHHCC
T ss_pred HhCCCcCCHHHHHHHHHHcc
Confidence 99999999999999998765
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.5e-48 Score=374.05 Aligned_cols=269 Identities=21% Similarity=0.400 Sum_probs=219.4
Q ss_pred cHHHHHHhhccCCC----CCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHH-HHHHHHHHHhhcCCCCCCcc
Q 016739 42 SARRWHAAFSEDGH----LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN-QIRQQRRDSLDQGWHVDGAI 116 (383)
Q Consensus 42 ~~~~W~~~l~~~~~----~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~ 116 (383)
+.++|++++.+++. .+..+ ++.++++|||+.+|+.||+.|+|+.+...+.+.+. .....+..+.+.
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~-------- 99 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQ-------- 99 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTS--------
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHh--------
Confidence 45689999988654 24444 77788899999999999999999744111000000 000000011111
Q ss_pred chHHHHHHhhhHhHHhhhhccCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcCCHHHHHHH
Q 016739 117 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWC 194 (383)
Q Consensus 117 ~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~~E~~aF~~ 194 (383)
.....++|++||.||+|++++|... .+++.|.|||.+|+.+||++|||||||+|||+|++++ +|++||||
T Consensus 100 -------~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~ 171 (331)
T 3qye_A 100 -------LTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKM 171 (331)
T ss_dssp -------CCTTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHH
T ss_pred -------cCCchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHH
Confidence 1123489999999999999999986 6899999999999999999999999999999999888 69999999
Q ss_pred HHHHHHhh-hhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHh
Q 016739 195 FEHTMRRL-RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMW 273 (383)
Q Consensus 195 f~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l 273 (383)
|+++|+.+ ...++ .+++.+++..+..++.+|+.++|+||+||.+.|+.+.+|+++||+|+|+++||++.++||||+++
T Consensus 172 l~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 172 LKFLMFDMGLRKQY-RPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHTTTCGGGGG-STTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 99999885 22333 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 016739 274 AMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKI 353 (383)
Q Consensus 274 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~ 353 (383)
++|.. +++++|+|+|..+++.||+ ..++++++++
T Consensus 251 ~~g~~---------------------------------------------~l~~valaiL~~~~~~ll~-~~~~~~il~~ 284 (331)
T 3qye_A 251 LQGTE---------------------------------------------VIFKVALSLLGSHKPLILQ-HENLETIVDF 284 (331)
T ss_dssp HHCTT---------------------------------------------HHHHHHHHHHHHTHHHHHT-CCSHHHHHHH
T ss_pred HCCcH---------------------------------------------HHHHHHHHHHHHHHHHHhc-CCCHHHHHHH
Confidence 98754 6899999999999999998 4599999999
Q ss_pred HhcccCCC---CHHHHHHHHHHHH
Q 016739 354 LADITGNL---DAKKACNEALKIQ 374 (383)
Q Consensus 354 ~~~l~~~~---d~~~~l~~a~~l~ 374 (383)
+++..+.+ |+++++++|..+.
T Consensus 285 l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 285 IKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred HHhhCCCCCHHHHHHHHHHHHhCC
Confidence 99855556 7899999996654
No 5
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.6e-48 Score=367.51 Aligned_cols=264 Identities=22% Similarity=0.316 Sum_probs=222.5
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHh--CC-CCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccchH
Q 016739 43 ARRWHAAFSEDGHLDIAKVLRRIQR--GG-IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDK 119 (383)
Q Consensus 43 ~~~W~~~l~~~~~~~~~~~lk~l~~--~G-IP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (383)
.+++++.+.+ ..+|.++ +|.+++ +| +|+++|+.||+.|+|+.+......+. .
T Consensus 20 ~~~i~~~l~~-~~~dl~~-Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~~~-----------------------~ 74 (292)
T 4hl4_A 20 VAEIHQALNS-DPTDVAA-LRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISG-----------------------K 74 (292)
T ss_dssp HHHHHHHHTS-SSCCHHH-HHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSCCC-----------------------T
T ss_pred HHHHHHHHcC-CcccHHH-HHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCchh-----------------------h
Confidence 3467777755 5578888 455544 23 79999999999999987764322110 0
Q ss_pred HHHHHhhhHhHHhhhhccCCCCCcCCCCh----hhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcCCHHHHHHHH
Q 016739 120 KVLQWMLGLHQIGLDVVRTDRSLVFYESE----TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCF 195 (383)
Q Consensus 120 ~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~----~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~~E~~aF~~f 195 (383)
......+..+||++||.||+|+++.|... ..++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||
T Consensus 75 ~~~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l 153 (292)
T 4hl4_A 75 NLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLV 153 (292)
T ss_dssp THHHHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHH
T ss_pred hhcccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHH
Confidence 01122346789999999999999988653 4578999999999999999999999999999999888 699999999
Q ss_pred HHHHHhhhhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhcCcCCC-hhHHHHHHHHHhh
Q 016739 196 EHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFS-FVDALYLWELMWA 274 (383)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~-~~~vlriWD~~l~ 274 (383)
+++|++..+.|+ .+++.+++..+..++.+|+..+|+|++||.+.++ ..+|+++||+|+|++++| ++.++||||++++
T Consensus 154 ~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~ 231 (292)
T 4hl4_A 154 EKLSTHHLRDFM-DPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLA 231 (292)
T ss_dssp HHHHHTTTTGGG-CSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 999998666665 4556788889999999999999999999999999 469999999999999996 9999999999999
Q ss_pred ccCCCcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 016739 275 MEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKIL 354 (383)
Q Consensus 275 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~~ 354 (383)
+|+. +++|+|+|++...+++||+...++++++.++
T Consensus 232 ~g~~---------------------------------------------~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l 266 (292)
T 4hl4_A 232 CHPL---------------------------------------------MPIYFAAVIVLYREQEVLDCDCDMASVHHLL 266 (292)
T ss_dssp SCTT---------------------------------------------HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHH
T ss_pred cCCc---------------------------------------------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8754 6899999999999999998666899999999
Q ss_pred hcccCCCCHHHHHHHHHHHHHHHHh
Q 016739 355 ADITGNLDAKKACNEALKIQKKYLS 379 (383)
Q Consensus 355 ~~l~~~~d~~~~l~~a~~l~~~y~~ 379 (383)
++++..+|++.+++.|..++++|+.
T Consensus 267 ~~lp~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 267 SQIPQDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp HSCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred HhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999864
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=372.21 Aligned_cols=259 Identities=20% Similarity=0.369 Sum_probs=217.0
Q ss_pred HHHHHhhccCCCC--CHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCCccchHHH
Q 016739 44 RRWHAAFSEDGHL--DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRDSLDQGWHVDGAISDKKV 121 (383)
Q Consensus 44 ~~W~~~l~~~~~~--~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 121 (383)
++|.+++++.+.. ...+.++.++++|||+.+|+.||+.|+|+.+.. .. ...+..+.....
T Consensus 6 ~~W~~~~~~w~~~~~~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~---~~----~~~Y~~l~~~~~----------- 67 (310)
T 3hzj_A 6 YSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQ---AM----LDRYRILITKDS----------- 67 (310)
T ss_dssp CCHHHHHHHHHTSTTSCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCH---HH----HHHHHHHTTSCC-----------
T ss_pred HHHHHHHHHHhhhcccCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcch---hH----HHHHHHHHhccC-----------
Confidence 4799998874332 233447888889999999999999999986531 11 112222221110
Q ss_pred HHHhhhHhHHhhhhccCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcccChhhHHHHHHhhcCCHHHHHHHHHHHH
Q 016739 122 LQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTM 199 (383)
Q Consensus 122 ~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm~~I~a~lll~~~~E~~aF~~f~~l~ 199 (383)
...++|++||.||+|++++|+.. .+++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|
T Consensus 68 ----~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~ 142 (310)
T 3hzj_A 68 ----AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIM 142 (310)
T ss_dssp ----TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 13479999999999999999876 5799999999999999999999999999999999999 7999999999999
Q ss_pred Hhh-hhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHhhccCC
Q 016739 200 RRL-RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYN 278 (383)
Q Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l~~~~~ 278 (383)
.++ ...++ .++++++...+..++.+++.++|+||+||.+.|+++.+|+++||+|+|++++|++.++||||+++++|..
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~ 221 (310)
T 3hzj_A 143 YDYGLRDLY-RNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN 221 (310)
T ss_dssp HTSCGGGGT-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred hcccccccc-cccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH
Confidence 874 22332 4567789999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHHHh-cc
Q 016739 279 PNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA-DI 357 (383)
Q Consensus 279 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~~~-~l 357 (383)
+++++|+|+|...+++||+. ++++++++++ .+
T Consensus 222 ---------------------------------------------~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~l 254 (310)
T 3hzj_A 222 ---------------------------------------------IIFHVALALLKTSKEDLLQA--DFEGALKFFRVQL 254 (310)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHH
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhC
Confidence 68999999999999999985 9999999996 56
Q ss_pred cCC----CCHHHHHHHHHHH
Q 016739 358 TGN----LDAKKACNEALKI 373 (383)
Q Consensus 358 ~~~----~d~~~~l~~a~~l 373 (383)
++. .|++.+++.|..+
T Consensus 255 p~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 255 PKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HHTTCSHHHHHHHHHHHHHS
T ss_pred cccccccccHHHHHHHHHhc
Confidence 643 4899999999776
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=292.26 Aligned_cols=253 Identities=16% Similarity=0.213 Sum_probs=192.7
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhCCCCccchHHHHHHhhCCCCCCCCHHHHHHHH-HHHHHHhhcCCCCCCccchHHHHH
Q 016739 45 RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIR-QQRRDSLDQGWHVDGAISDKKVLQ 123 (383)
Q Consensus 45 ~W~~~l~~~~~~~~~~~lk~l~~~GIP~~~R~~vW~~Llg~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (383)
..+.++.+ ..+|..++.+.+++||||+.+|+.||++|+|+.|.+.+. +..+. +++.++.+-...
T Consensus 28 ~~~~ll~~-~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~------------ 92 (294)
T 3qwl_A 28 SLEILLKD-DRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHA------------ 92 (294)
T ss_dssp HHHHHTTS-SBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHhcC-CCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHh------------
Confidence 45566654 778999966666666699999999999999999988655 33333 333333221000
Q ss_pred HhhhHhHHhhhhccCCCCCcCCCChhhHHHHHHHHHHHHHh----------cCCCCcccChhhHHHHHHhhcCCHHHHHH
Q 016739 124 WMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWV----------DNDIGYVQGMNDICSPMIVLLENEADAFW 193 (383)
Q Consensus 124 ~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~----------~p~igY~QGm~~I~a~lll~~~~E~~aF~ 193 (383)
.++.++|+.+.++ ....|..|... +++ .++|||..||+++++++.+|+||||
T Consensus 93 -~~~~r~I~~~tP~----------------~~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW 154 (294)
T 3qwl_A 93 -LKVVRFVSDATPQ----------------AEVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYW 154 (294)
T ss_dssp -HHHTTSCCTTSCH----------------HHHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred -hhhhhhhhccCch----------------HHHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHH
Confidence 1122333332111 11222233221 222 2459999999999999999999999
Q ss_pred HHHHHHHhhhhcccCCCChHhHHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHh
Q 016739 194 CFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMW 273 (383)
Q Consensus 194 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l 273 (383)
||+++|+++.++|. .+++|++.. ++.+|+.++|+|++||++.|+.+.+++.+||+++|+++||+++++||||++|
T Consensus 155 ~f~~Lm~~l~~~f~--~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~ 229 (294)
T 3qwl_A 155 ITRRFVNQLNTKYR--DSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVV 229 (294)
T ss_dssp HHHHHHHHHHTTTT--TTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999876665 346687654 4899999999999999999998777777999999999999999999999999
Q ss_pred hccCCCcchhhhcccCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCcchHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 016739 274 AMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKI 353 (383)
Q Consensus 274 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~il~~~~~~~~~~~~ 353 (383)
+.|. .|++++|+|+|..+|+.||+ ....++++++
T Consensus 230 ~~~~---------------------------------------------~~l~~valAiL~~~r~~Ll~-~~~~~~il~~ 263 (294)
T 3qwl_A 230 SGSC---------------------------------------------KILVFVAVEILLTFKIKVMA-LNSAEKITKF 263 (294)
T ss_dssp TTCS---------------------------------------------THHHHHHHHHHHHTHHHHHH-CCSHHHHHHH
T ss_pred hCCc---------------------------------------------hHHHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 8543 37899999999999999998 4456999999
Q ss_pred HhcccCCCCHHHHHHHHHHHHHHHHhhhc
Q 016739 354 LADITGNLDAKKACNEALKIQKKYLSKSK 382 (383)
Q Consensus 354 ~~~l~~~~d~~~~l~~a~~l~~~y~~~~~ 382 (383)
+++++ ..|++.++++|..++.+|++..+
T Consensus 264 Lq~lp-~~di~~ll~~A~~l~~~~~~~~~ 291 (294)
T 3qwl_A 264 LENIP-QDSSDAIVSKAIDLWHKHCGTPV 291 (294)
T ss_dssp HTTCC-STTHHHHHHHHHHHHHHHHCCCC
T ss_pred HHcCC-cccHHHHHHHHHHHHHHcCCCCc
Confidence 99999 67999999999999999987644
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=39.97 E-value=97 Score=30.26 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHhhccCCCc
Q 016739 232 KLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPN 280 (383)
Q Consensus 232 ~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l~~~~~~~ 280 (383)
++++.+.+.|+.|...++.-++..+++.=..+.+.++|+.+...|..|+
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 3556667788888888888888888888888999999999888877664
No 9
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=27.52 E-value=45 Score=24.10 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=29.1
Q ss_pred hcCChHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHh
Q 016739 343 EAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 379 (383)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~~d~~~~l~~a~~l~~~y~~ 379 (383)
...++++|..++......-.+-+++++|+.+|++-..
T Consensus 38 ~~~d~~eIs~Yle~~~~~~~~~e~vkralsly~~~~~ 74 (80)
T 2kvs_A 38 LEERHQVIRAYVMSNYTDHQLIETTNRAISLYMANLE 74 (80)
T ss_dssp SCSSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999866566677889999999987543
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=19.61 E-value=3e+02 Score=26.60 Aligned_cols=49 Identities=12% Similarity=-0.099 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCCcchhhHHHHHHhcCcCCChhHHHHHHHHHhhccCCCc
Q 016739 232 KLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPN 280 (383)
Q Consensus 232 ~L~~hL~~~~i~~~~f~~~Wf~tlF~~~l~~~~vlriWD~~l~~~~~~~ 280 (383)
++++.+.+.|+.|..+++.-++..+++.=.++.+..+++.+...|..|+
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR 139 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Confidence 3566777889999999999999999998899999999999998887664
Done!