BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016740
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 13/157 (8%)
Query: 109 VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITKALKRGVRVIELDLWPNSAKD-D 167
++ DMT PL+HYFI + HN+YL QFS S + L G R +ELD W D +
Sbjct: 310 LHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEE 369
Query: 168 VLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTFEDHLN-PHLQAKVAQMITQTFG 226
++ HG T+TT + + + AI E+AF SPYP+IL+FE+H++ P QAK+A+ FG
Sbjct: 370 PIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFG 429
Query: 227 AMLYSPESECLKEF--------PSPEELKYRIIISTK 255
ML +E L++F PSPE+L+ +I+I K
Sbjct: 430 DMLL---TEPLEKFPLKPGVPLPSPEDLRGKILIKNK 463
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 11/225 (4%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVSIEDAEQIVDQVLQRWH--HIARFT 83
A++ F++ A ++ E+L FL H E + +++R+ A+
Sbjct: 80 AEIDRAFEEAAGSAETLSVERLVTFL----QHQQREEEAGPALALSLIERYEPSETAK-A 134
Query: 84 RRSLTVEDFHHYLFSTDLNP-PLGNQ-VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSD 141
+R +T + F YL S D N L ++ VYQDM PLSHY + + HN+YL+ +Q + S
Sbjct: 135 QRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSST 194
Query: 142 VPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPV 201
+AL +G R +ELD W + + ++ HG T T+ + LRAI++ AF ASPYPV
Sbjct: 195 EAYIRALCKGCRCLELDCW-DGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 253
Query: 202 ILTFEDHLNPHLQAKVAQMITQTFGAMLY-SPESECLKEFPSPEE 245
IL+ E+H + Q +A+ + G +L P PSPE+
Sbjct: 254 ILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQ 298
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 11/225 (4%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVSIEDAEQIVDQVLQRWH--HIARFT 83
A++ F++ A ++ E+L FL H E + +++R+ A+
Sbjct: 78 AEIDRAFEEAAGSAETLSVERLVTFL----QHQQREEEAGPALALSLIERYEPSETAK-A 132
Query: 84 RRSLTVEDFHHYLFSTDLNP-PLGNQ-VYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSD 141
+R +T + F YL S D N L ++ VYQDM PLSHY + + HN+YL+ +Q + S
Sbjct: 133 QRQMTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSST 192
Query: 142 VPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPV 201
+AL +G R +ELD W + + ++ HG T T+ + LRAI++ AF ASPYPV
Sbjct: 193 EAYIRALCKGCRCLELDCW-DGPNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPV 251
Query: 202 ILTFEDHLNPHLQAKVAQMITQTFGAMLY-SPESECLKEFPSPEE 245
IL+ E+H + Q +A+ + G +L P PSPE+
Sbjct: 252 ILSLENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQ 296
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 34/300 (11%)
Query: 36 AEGGTHMTAEQLWQFLVEVQGHGGVS------IEDAEQIVDQVLQRWHHIARFTRR-SLT 88
A+G ++T EQL F+ + Q ++ + ++ + +++++ +F R ++
Sbjct: 236 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL--LIEKYEPNQQFLERDQMS 293
Query: 89 VEDFHHYLFSTD--LNPPLGNQVYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITK 146
+E F YL + + P + DMT PLS YFI + HN+YL Q + S +
Sbjct: 294 MEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQ 353
Query: 147 ALKRGVRVIELDLWPNSA-KDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTF 205
AL G R +ELD+W +++ + HG T+TT V L L AI E AF SPYPVIL+F
Sbjct: 354 ALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSF 413
Query: 206 EDHLN-PHLQAKVAQMITQTFG-AMLYSPESECLKE----FPSPEELKYRIIISTKPPKE 259
E+H++ QAK+A+ FG A+L P + PSP++L RI++ K
Sbjct: 414 ENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK---- 469
Query: 260 RREKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEAC 319
R SA G D G++ P +N A E S Q ++++C
Sbjct: 470 --------KRHRPSAGGP----DSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSC 517
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 34/300 (11%)
Query: 36 AEGGTHMTAEQLWQFLVEVQGHGGVS------IEDAEQIVDQVLQRWHHIARFTRR-SLT 88
A+G ++T EQL F+ + Q ++ + ++ + +++++ +F R ++
Sbjct: 234 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARL--LIEKYEPNQQFLERDQMS 291
Query: 89 VEDFHHYLFSTD--LNPPLGNQVYQDMTAPLSHYFIYTGHNSYLIGNQFSSDCSDVPITK 146
+E F YL + + P + DMT PLS YFI + HN+YL Q + S +
Sbjct: 292 MEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQ 351
Query: 147 ALKRGVRVIELDLWPN-SAKDDVLVLHGRTLTTPVELIKCLRAIKENAFSASPYPVILTF 205
AL G R +ELD+W +++ + HG T+TT V L L AI E AF SPYPVIL+F
Sbjct: 352 ALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSF 411
Query: 206 EDHLN-PHLQAKVAQMITQTFG-AMLYSPESECL----KEFPSPEELKYRIIISTKPPKE 259
E+H++ QAK+A+ FG A+L P + PSP++L RI++ K
Sbjct: 412 ENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNK---- 467
Query: 260 RREKKGINNRKDISAKGKISTEDVLGKEPPDLTANQADDERSDYDTSEHNQCDEDNTEAC 319
R SA G D G++ P +N A E S Q ++++C
Sbjct: 468 --------KRHRPSAGGP----DSAGRKRPLEQSNSALSESSAATEPSSPQLGSPSSDSC 515
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 31/252 (12%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVS---------------IEDAEQIVD 70
++++ +FK+ ++ ++T FL ++Q H + I D E V+
Sbjct: 229 SEIEGIFKELSKNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVN 288
Query: 71 QVLQRWHHIARFTRRSLTVEDFHHYLF--STDLNPPLGNQVYQDMTAPLSHYFIYTGHNS 128
+ ++ + LT E ++L +L P + +M L+ Y+I + HN+
Sbjct: 289 KKGKK--------KGQLTKEGLLYFLMCEENNLTPMHRLDLGANMKLTLAAYYINSSHNT 340
Query: 129 YLIGNQFSSDCSDVPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRA 188
YL G+Q + S + L G R +ELD W + + ++ HG T+ T V + A
Sbjct: 341 YLTGHQLTGKSSVEIYRQVLLTGCRCLELDCW-DGKDGEPIITHGFTMCTEVLFKDVVYA 399
Query: 189 IKENAFSASPYPVILTFEDHLNPHLQAKVAQMITQTFGAMLYSP--ESECLK---EFPSP 243
I E+AF S YPVIL+FE+H + Q +AQ + FG +L + LK P+P
Sbjct: 400 IAESAFKVSDYPVILSFENHCSVAQQKLLAQYCNEAFGELLLDKPIDGHPLKPGVPLPTP 459
Query: 244 EELKYRIIISTK 255
+L+ +I+I K
Sbjct: 460 YDLRKKILIKNK 471
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 26 ADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVS---------------IEDAEQIVD 70
++++ +FK+ ++ ++T FL ++Q H + I + E V+
Sbjct: 229 SEIEGIFKELSQNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDSQCDALINEYESAVN 288
Query: 71 QVLQRWHHIARFTRRSLTVEDFHHYLF--STDLNPPLGNQVYQDMTAPLSHYFIYTGHNS 128
+ ++ + LT E ++L +L P + +M L+ Y+I + HN+
Sbjct: 289 KKGKK--------KGQLTKEGLLYFLMCEENNLTPMHRLDLGANMKLSLAAYYINSSHNT 340
Query: 129 YLIGNQFSSDCSDVPITKALKRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVELIKCLRA 188
YL G+Q + S + L G R +ELD W + + ++ HG T+ T V+ + A
Sbjct: 341 YLTGHQLTGKSSVEIYRQVLLTGCRCLELDCW-DGKDGEPIITHGFTMCTEVQFKDVVHA 399
Query: 189 IKENAFSASPYPVILTFEDHLNPHLQAKVAQMITQTFGAML 229
I E AF S YPVIL+FE+H + Q +AQ + FG +L
Sbjct: 400 IAECAFKVSEYPVILSFENHCSVPQQKLLAQYCHEAFGELL 440
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 6 LCGLPACFTRKHKVAEA----GPPADVKEMFKKYAEGGTHMTAEQLWQFLVEVQGHGGVS 61
L G P C + +++ + GP D F K + TH+T +QF H +
Sbjct: 142 LGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQFFELDVYHSDGT 201
Query: 62 IEDAEQIVDQVLQRWH 77
A+QI Q+ + W+
Sbjct: 202 PLTADQIFVQLEKIWN 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,839,118
Number of Sequences: 62578
Number of extensions: 498185
Number of successful extensions: 1209
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 15
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)