Query 016742
Match_columns 383
No_of_seqs 229 out of 989
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:24:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 2.1E-61 4.6E-66 462.7 27.4 285 70-371 33-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.5E-51 3.2E-56 382.4 13.5 177 112-289 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.4E-47 3.1E-52 353.2 19.8 168 124-292 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.1 4.4E-09 9.6E-14 104.4 20.2 119 100-225 1-137 (314)
5 PF14592 Chondroitinas_B: Chon 98.9 1.2E-08 2.7E-13 104.2 13.3 193 89-291 1-256 (425)
6 PLN02218 polygalacturonase ADP 98.3 1.5E-05 3.2E-10 82.7 14.6 103 149-255 219-323 (431)
7 PF13229 Beta_helix: Right han 98.3 2.3E-05 4.9E-10 67.3 13.0 133 147-293 2-138 (158)
8 PLN03003 Probable polygalactur 98.2 3.7E-05 8E-10 80.1 16.6 102 150-255 166-269 (456)
9 TIGR03808 RR_plus_rpt_1 twin-a 98.2 7.4E-05 1.6E-09 77.2 18.0 111 98-214 55-175 (455)
10 PLN02793 Probable polygalactur 98.2 2.7E-05 5.8E-10 81.0 14.5 104 148-255 203-308 (443)
11 TIGR03805 beta_helix_1 paralle 98.2 0.00014 3.1E-09 72.3 18.5 152 130-295 63-245 (314)
12 PLN02218 polygalacturonase ADP 98.1 0.00018 4E-09 74.6 19.3 136 148-299 195-352 (431)
13 PLN02155 polygalacturonase 98.1 3.4E-05 7.4E-10 79.1 13.4 102 149-254 172-275 (394)
14 PLN02188 polygalacturonase/gly 98.1 4.2E-05 9.2E-10 78.7 14.2 95 151-248 184-280 (404)
15 PF12708 Pectate_lyase_3: Pect 98.1 0.0001 2.2E-09 67.5 15.0 102 99-201 20-141 (225)
16 PF00295 Glyco_hydro_28: Glyco 97.9 5.3E-05 1.2E-09 75.6 9.3 105 147-255 117-223 (326)
17 PLN03010 polygalacturonase 97.9 0.0027 6E-08 65.5 21.4 99 153-255 188-288 (409)
18 PLN03010 polygalacturonase 97.8 0.00071 1.5E-08 69.8 17.0 172 112-298 107-316 (409)
19 PLN02480 Probable pectinestera 97.8 0.0022 4.7E-08 64.8 19.3 117 93-215 53-196 (343)
20 PF07602 DUF1565: Protein of u 97.7 0.0021 4.6E-08 62.1 17.1 118 99-219 17-165 (246)
21 PF01696 Adeno_E1B_55K: Adenov 97.7 0.0021 4.6E-08 65.6 17.6 183 85-293 47-241 (386)
22 PLN02793 Probable polygalactur 97.7 0.0035 7.6E-08 65.4 19.7 137 148-298 180-336 (443)
23 PF13229 Beta_helix: Right han 97.7 0.00047 1E-08 59.1 11.2 129 147-289 25-158 (158)
24 PLN03003 Probable polygalactur 97.7 0.0025 5.5E-08 66.6 18.3 109 148-269 141-262 (456)
25 PLN02197 pectinesterase 97.6 0.011 2.5E-07 63.6 22.6 132 62-198 251-409 (588)
26 PF05048 NosD: Periplasmic cop 97.6 0.0024 5.2E-08 60.1 15.4 105 147-266 59-165 (236)
27 PF05048 NosD: Periplasmic cop 97.6 0.0015 3.3E-08 61.5 13.3 131 145-291 35-167 (236)
28 PLN02188 polygalacturonase/gly 97.3 0.0084 1.8E-07 61.9 16.5 137 148-298 158-316 (404)
29 PLN02155 polygalacturonase 97.3 0.0072 1.6E-07 62.2 15.7 137 148-298 148-305 (394)
30 PF00295 Glyco_hydro_28: Glyco 97.3 0.0022 4.7E-08 64.1 11.5 89 148-249 95-188 (326)
31 PLN02176 putative pectinestera 97.2 0.0045 9.8E-08 62.5 12.9 117 93-215 44-187 (340)
32 PLN02432 putative pectinestera 97.2 0.022 4.8E-07 56.4 16.9 111 99-215 25-152 (293)
33 PLN02416 probable pectinestera 97.2 0.026 5.5E-07 60.4 18.3 118 93-215 235-396 (541)
34 TIGR03808 RR_plus_rpt_1 twin-a 97.2 0.0051 1.1E-07 63.9 12.5 68 133-201 123-209 (455)
35 PLN02170 probable pectinestera 97.1 0.038 8.3E-07 58.8 18.6 103 93-198 230-358 (529)
36 PLN02217 probable pectinestera 97.0 0.037 8E-07 60.5 18.2 197 93-293 255-516 (670)
37 PLN02773 pectinesterase 96.9 0.068 1.5E-06 53.6 17.8 111 99-215 19-161 (317)
38 PLN02682 pectinesterase family 96.9 0.078 1.7E-06 54.2 18.1 111 99-215 84-227 (369)
39 PLN02933 Probable pectinestera 96.9 0.084 1.8E-06 56.4 18.9 104 92-198 222-350 (530)
40 PLN02301 pectinesterase/pectin 96.9 0.066 1.4E-06 57.4 18.2 120 93-215 241-402 (548)
41 PLN02990 Probable pectinestera 96.8 0.1 2.2E-06 56.3 19.1 120 93-215 264-426 (572)
42 COG5434 PGU1 Endopygalactoruna 96.8 0.021 4.5E-07 60.9 13.5 102 147-254 263-375 (542)
43 smart00656 Amb_all Amb_all dom 96.8 0.032 7E-07 51.7 13.1 131 130-269 45-189 (190)
44 PLN02713 Probable pectinestera 96.8 0.085 1.8E-06 56.8 18.0 120 93-215 255-419 (566)
45 COG3420 NosD Nitrous oxidase a 96.7 0.041 8.8E-07 55.4 14.1 94 116-215 39-139 (408)
46 PLN02488 probable pectinestera 96.7 0.091 2E-06 55.7 17.5 120 93-215 202-363 (509)
47 PLN02506 putative pectinestera 96.7 0.07 1.5E-06 57.1 16.6 97 99-198 246-364 (537)
48 PLN02665 pectinesterase family 96.7 0.12 2.7E-06 52.7 17.7 109 99-215 82-218 (366)
49 PLN02745 Putative pectinestera 96.7 0.1 2.2E-06 56.5 17.9 120 93-215 290-451 (596)
50 PLN03043 Probable pectinestera 96.6 0.095 2.1E-06 56.1 17.3 118 95-215 230-392 (538)
51 PLN02201 probable pectinestera 96.6 0.11 2.3E-06 55.5 17.3 103 93-198 211-338 (520)
52 PF01095 Pectinesterase: Pecti 96.6 0.051 1.1E-06 54.0 14.0 109 99-215 14-146 (298)
53 PLN02313 Pectinesterase/pectin 96.6 0.15 3.2E-06 55.3 18.4 119 94-215 281-441 (587)
54 PLN02304 probable pectinestera 96.6 0.032 6.8E-07 57.2 12.5 115 95-215 82-226 (379)
55 PLN02995 Probable pectinestera 96.5 0.033 7.1E-07 59.6 12.9 117 93-215 228-371 (539)
56 PLN02468 putative pectinestera 96.5 0.13 2.8E-06 55.5 17.3 118 95-215 265-424 (565)
57 PLN02497 probable pectinestera 96.4 0.26 5.7E-06 49.7 17.9 111 99-215 46-181 (331)
58 PLN02484 probable pectinestera 96.4 0.24 5.3E-06 53.6 18.4 121 93-215 277-439 (587)
59 COG3420 NosD Nitrous oxidase a 96.4 0.086 1.9E-06 53.1 13.7 92 125-220 99-196 (408)
60 PLN02708 Probable pectinestera 96.3 0.027 5.8E-07 60.4 11.0 103 93-198 246-375 (553)
61 PLN02314 pectinesterase 96.3 0.033 7.1E-07 60.2 11.5 104 93-199 283-411 (586)
62 PLN02916 pectinesterase family 96.3 0.23 4.9E-06 52.8 17.4 103 93-198 192-322 (502)
63 PLN02634 probable pectinestera 96.0 0.11 2.4E-06 52.9 12.9 111 99-215 70-213 (359)
64 PF12708 Pectate_lyase_3: Pect 95.9 0.027 5.9E-07 51.4 7.7 102 131-248 98-221 (225)
65 PF00544 Pec_lyase_C: Pectate 95.7 0.16 3.4E-06 47.4 11.6 128 130-266 51-200 (200)
66 PRK10531 acyl-CoA thioesterase 95.5 0.35 7.5E-06 50.3 14.4 111 85-199 80-256 (422)
67 COG3866 PelB Pectate lyase [Ca 95.4 0.41 8.9E-06 47.7 13.6 142 148-293 95-252 (345)
68 PLN02671 pectinesterase 95.1 0.32 7E-06 49.6 12.6 109 99-215 73-217 (359)
69 COG5434 PGU1 Endopygalactoruna 93.2 0.38 8.3E-06 51.5 8.7 135 107-248 236-399 (542)
70 PF14592 Chondroitinas_B: Chon 89.1 0.92 2E-05 47.3 6.5 35 236-270 246-284 (425)
71 PF08480 Disaggr_assoc: Disagg 87.5 3.8 8.3E-05 38.3 8.7 88 205-293 2-110 (198)
72 COG4677 PemB Pectin methyleste 81.6 19 0.00041 36.6 11.2 146 98-255 95-294 (405)
73 PF12541 DUF3737: Protein of u 81.5 19 0.00041 35.5 10.9 99 149-269 113-225 (277)
74 PF12541 DUF3737: Protein of u 81.1 4.7 0.0001 39.6 6.7 64 152-227 17-80 (277)
75 PLN02698 Probable pectinestera 69.6 18 0.00039 38.7 8.0 53 146-199 263-316 (497)
76 TIGR03804 para_beta_helix para 69.4 8 0.00017 26.8 3.7 40 173-215 1-40 (44)
77 PF08480 Disaggr_assoc: Disagg 62.0 47 0.001 31.2 8.2 73 179-251 32-113 (198)
78 PF03211 Pectate_lyase: Pectat 49.9 2.4E+02 0.0052 27.0 11.0 67 148-222 57-124 (215)
79 PF03718 Glyco_hydro_49: Glyco 46.5 1E+02 0.0022 33.5 8.7 96 141-242 336-441 (582)
80 TIGR03804 para_beta_helix para 44.9 48 0.001 22.7 4.3 41 147-192 1-41 (44)
81 PF07602 DUF1565: Protein of u 43.7 1.3E+02 0.0028 29.3 8.4 85 129-222 96-193 (246)
82 PF06355 Aegerolysin: Aegeroly 35.0 1.5E+02 0.0033 26.0 6.8 58 154-212 15-88 (131)
83 PF03211 Pectate_lyase: Pectat 34.8 2.8E+02 0.0062 26.5 9.0 57 155-215 83-139 (215)
84 KOG1924 RhoA GTPase effector D 31.9 47 0.001 37.6 3.6 19 236-254 860-878 (1102)
85 PF01696 Adeno_E1B_55K: Adenov 30.5 1.6E+02 0.0035 30.6 7.0 76 205-290 121-198 (386)
86 smart00710 PbH1 Parallel beta- 26.0 94 0.002 17.7 2.8 14 182-195 3-16 (26)
87 PRK03174 sspH acid-soluble spo 22.0 66 0.0014 24.6 1.9 18 172-189 14-31 (59)
88 KOG2675 Adenylate cyclase-asso 20.6 59 0.0013 34.3 1.8 19 195-213 363-381 (480)
89 KOG0639 Transducin-like enhanc 20.4 1.1E+03 0.024 25.8 11.0 47 144-193 529-579 (705)
90 COG5178 PRP8 U5 snRNP spliceos 20.3 67 0.0014 38.0 2.2 7 180-186 200-206 (2365)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-61 Score=462.68 Aligned_cols=285 Identities=33% Similarity=0.560 Sum_probs=240.2
Q ss_pred CcccccC-------CCCCCCCCCeEEecCCCCCCCchHHHhhhcCCCeEEEEEeceEEEec------ceeEeccCcceee
Q 016742 70 QAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVSSYKTIDG 136 (383)
Q Consensus 70 ~aeGfg~-------~ttGG~gG~v~~VTnl~d~g~GSLr~ai~~~~Pr~IVf~vsG~I~l~------~~l~V~snkTI~G 136 (383)
+.+|||+ +||||.+|++++|+|.+| |..++++.+|.++|+.|.|+|+++ ..|+|.+||||+|
T Consensus 33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG 107 (345)
T COG3866 33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVG 107 (345)
T ss_pred cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEe
Confidence 3678876 589999999999999999 999999999997777899999997 3577789999999
Q ss_pred eccceEEeCCcEEEeeeccEEEeeeEEecCCCCC--CCceEecCCCceEEEEceeeec--------CCCCceEeecCCce
Q 016742 137 RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPD--VDAIQIKPKSKHIWIDRCSLRD--------YDDGLIDITRESTD 206 (383)
Q Consensus 137 ~G~gi~I~G~gl~i~~a~NVIIRnL~ir~g~~~d--~DaI~i~~~s~nVwIDHcs~s~--------~~Dglidi~~~s~~ 206 (383)
.|...+|.|++|.|+.+.|||||||+|++--..| .|+|+|+..++|||||||+|.. ..||++|+++++++
T Consensus 108 ~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~Any 187 (345)
T COG3866 108 SGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANY 187 (345)
T ss_pred eccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcE
Confidence 9999999999999999999999999999765434 4999996689999999999998 68999999999999
Q ss_pred EEEeCceecCCCceeEecCCCCC-CCCcceeEEEeceeecCCCCcCCccccCeeEEEcceEEccccceeeecCC--ceEE
Q 016742 207 ITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD--SQIY 283 (383)
Q Consensus 207 VTIS~n~f~~H~k~~LiG~~d~~-~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~a~~~~~~--a~i~ 283 (383)
||||||+|++|+|.+|+|.+|+. ..|+..+||||||||+|+.+|+||+|||.+||+||||.....+++..+++ |+++
T Consensus 188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Akiy 267 (345)
T COG3866 188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIY 267 (345)
T ss_pred EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEE
Confidence 99999999999999999999864 45677999999999999999999999999999999999765555555555 9999
Q ss_pred EEceEEecCCccceeeeeccccCCccccCcceEEecCCEEEccccccccccCCcccccCCCCCCCccccCChHHHHHHHH
Q 016742 284 SQCNIYEAGQKKMAFKYLTEKASDKEEARSGCIRSEGDLFITGTQAGLMTEAGEHSMFHPSEYYPTWTVAAPTDNLKQVL 363 (383)
Q Consensus 284 ~e~Nyf~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~gn~~~nG~~~~~~~~~~~~~~~~p~~~Y~~yt~~~A~~a~~~vl 363 (383)
+|+|||+....+..| +. ++ ..+||+..+-+.|++.+...... .+...|+|+++| +|++++++ .+|++|
T Consensus 268 vE~NyF~~~~~~~~f--~d----t~--~~~GY~~~d~gsy~~~s~~~~~~--~~G~~w~ps~~Y-~Ytvd~~~-dVks~V 335 (345)
T COG3866 268 VENNYFENGSEGLGF--LD----TK--GTSGYANQDSGSYLNSSKSMSVR--AGGVTWNPSSYY-SYTVDPPE-DVKSFV 335 (345)
T ss_pred EecceeccCCCCcee--ee----cC--CccceEEeccCceecccCCcccc--cCCccCCCCCCc-ccccCChH-Hhhhhh
Confidence 999999998766544 21 11 12499885555555543321111 223689999999 59999985 689999
Q ss_pred HhccCCCC
Q 016742 364 QHCTGWQD 371 (383)
Q Consensus 364 ~~~AG~q~ 371 (383)
.++||+.+
T Consensus 336 t~yAGaGk 343 (345)
T COG3866 336 TNYAGAGK 343 (345)
T ss_pred hcccccee
Confidence 99999875
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.5e-51 Score=382.39 Aligned_cols=177 Identities=46% Similarity=0.750 Sum_probs=158.4
Q ss_pred EEEEeceEEEecceeEeccCcceeeeccceEEeCCcEEEe-eeccEEEeeeEEecC----------C--CCCCCceEecC
Q 016742 112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGG----------K--GPDVDAIQIKP 178 (383)
Q Consensus 112 IVf~vsG~I~l~~~l~V~snkTI~G~G~gi~I~G~gl~i~-~a~NVIIRnL~ir~g----------~--~~d~DaI~i~~ 178 (383)
+||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+.. . ..+.|+|+|+
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4788999999999999999999999999999999999997 899999999999981 1 2568999998
Q ss_pred CCceEEEEceeeecC--------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEeceeecCCCCc
Q 016742 179 KSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR 250 (383)
Q Consensus 179 ~s~nVwIDHcs~s~~--------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R 250 (383)
++++||||||+|+|. .||++|++.++++||||||+|.+|+|++|+|+++....|.+++||||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 789999999999999 999999999999999999999999999999998776777779999999999999999
Q ss_pred CCccccCeeEEEcceEEccccceeeecCCceEEEEceEE
Q 016742 251 HPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289 (383)
Q Consensus 251 ~Pr~r~G~~hv~NN~~~n~~~~a~~~~~~a~i~~e~Nyf 289 (383)
+||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.4e-47 Score=353.16 Aligned_cols=168 Identities=45% Similarity=0.699 Sum_probs=157.3
Q ss_pred ceeEeccCcceeeeccceEEeCCcEEEeeeccEEEeeeEEecCCC---CCCCceEecCCCceEEEEceeeecC-------
Q 016742 124 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDY------- 193 (383)
Q Consensus 124 ~~l~V~snkTI~G~G~gi~I~G~gl~i~~a~NVIIRnL~ir~g~~---~d~DaI~i~~~s~nVwIDHcs~s~~------- 193 (383)
.+|.|+|||||+|+|++++|.|.+|++.+++|||||||+|+++.. .+.|+|+++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 468899999999999999999999999889999999999998764 568999997 799999999999998
Q ss_pred --CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEeceeecCCCCcCCccccCeeEEEcceEEcccc
Q 016742 194 --DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI 271 (383)
Q Consensus 194 --~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~ 271 (383)
.|+++|++.++++||||||+|.+|+|++|||+++....+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999998766555578999999999999999999999999999999999998
Q ss_pred ceeeecCCceEEEEceEEecC
Q 016742 272 YAVCASVDSQIYSQCNIYEAG 292 (383)
Q Consensus 272 ~a~~~~~~a~i~~e~Nyf~~g 292 (383)
|+++++.++++++|+|||+..
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999864
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.14 E-value=4.4e-09 Score=104.38 Aligned_cols=119 Identities=26% Similarity=0.322 Sum_probs=78.6
Q ss_pred HHHhhhcCCCeEEEEEeceEEEecceeEec-cCcceeeeccc-eEEe-------CCcEEEeeeccEEEeeeEEecCCCCC
Q 016742 100 LREGCRMKEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFEGGKGPD 170 (383)
Q Consensus 100 Lr~ai~~~~Pr~IVf~vsG~I~l~~~l~V~-snkTI~G~G~g-i~I~-------G~gl~i~~a~NVIIRnL~ir~g~~~d 170 (383)
|++|+.+..|..+|+--.|+..++..|.|. +++||.|.|.. ..|. +.+|.+. ++||.|++|+++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~--- 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK--- 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence 678898888876665578999888888887 89999998753 4443 2346554 788888888887642
Q ss_pred CCceEecCCCceEEEEceeeecC--------CCCceEeecCCceEEEeCceecC-CCceeEecC
Q 016742 171 VDAIQIKPKSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSS-HDKTMLIGA 225 (383)
Q Consensus 171 ~DaI~i~~~s~nVwIDHcs~s~~--------~Dglidi~~~s~~VTIS~n~f~~-H~k~~LiG~ 225 (383)
.+||.+. +++++.|++|.+.|. .+| |.+ ..+.+++|.+|.++. .+.++.++.
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g~~d~GIyv~~ 137 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRGASDAGIYVGQ 137 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEECCCcccEEECC
Confidence 3566665 566777777776643 334 333 246666777776654 233444443
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.92 E-value=1.2e-08 Score=104.25 Aligned_cols=193 Identities=17% Similarity=0.230 Sum_probs=96.6
Q ss_pred ecCCCCCCCchHHHhhhcCCCeEEEEEeceEEEecceeEec------cCcceeee-ccceEEeCC-cEEEeeeccEEEee
Q 016742 89 VTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGK-GLRLKECEHVIICN 160 (383)
Q Consensus 89 VTnl~d~g~GSLr~ai~~~~Pr~IVf~vsG~I~l~~~l~V~------snkTI~G~-G~gi~I~G~-gl~i~~a~NVIIRn 160 (383)
|+|+++ |++||++..|...|+-.+|+.+ ...|.+. ..+||..+ ..++.|.|. .|+|. ++.++|.+
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 566666 9999998887766666889997 3355552 45788887 457788876 47886 79999999
Q ss_pred eEEecCCCCC---------CC-------------------------ceEe---cCCCceEEEEceeeecC--CCCceEee
Q 016742 161 LEFEGGKGPD---------VD-------------------------AIQI---KPKSKHIWIDRCSLRDY--DDGLIDIT 201 (383)
Q Consensus 161 L~ir~g~~~d---------~D-------------------------aI~i---~~~s~nVwIDHcs~s~~--~Dglidi~ 201 (383)
|.|+.+.... .+ ...+ .-.+++--||||.|..- ..-+|-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 9998642100 00 1111 00134445699999752 23333332
Q ss_pred -------cCCceEEEeCceecC-------CCceeEecCCCCCCCCcceeEEEeceeecCCCCcCCcc--ccCeeEEEcce
Q 016742 202 -------RESTDITVSRCHFSS-------HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYAKVHLYNNY 265 (383)
Q Consensus 202 -------~~s~~VTIS~n~f~~-------H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~--r~G~~hv~NN~ 265 (383)
....+-+|.+|+|.. ...++-||.+...-.+ -+.++.+|||.+|.+-.=-+ +.+..-++||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 124577899999983 4557888876432222 37899999999998875444 34566777887
Q ss_pred EEccccceeeecCCceEEEEceEEec
Q 016742 266 TRNWGIYAVCASVDSQIYSQCNIYEA 291 (383)
Q Consensus 266 ~~n~~~~a~~~~~~a~i~~e~Nyf~~ 291 (383)
|++... ++..+-+-.-.+++|||..
T Consensus 232 f~es~G-~ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 232 FRESQG-SLTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp EES-SS-EEEEEE-SS-EEES-EEEE
T ss_pred EEeccc-eEEEecCCCceEeccEEec
Confidence 777542 3333433344445666654
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.28 E-value=1.5e-05 Score=82.66 Aligned_cols=103 Identities=19% Similarity=0.337 Sum_probs=75.2
Q ss_pred EEeeeccEEEeeeEEecC-CCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 016742 149 RLKECEHVIICNLEFEGG-KGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g-~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d 227 (383)
.+..++||+|++|+|... .....|||.+. .++||+|.+|.+.-+.| +|.++.++++|+|++|.+. +..++-||+..
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I~n~~c~-~GHGisIGS~g 295 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDD-CISIESGSQNVQINDITCG-PGHGISIGSLG 295 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCc-eEEecCCCceEEEEeEEEE-CCCCEEECcCC
Confidence 334567777777777653 23457999997 79999999999998866 5899999999999999995 34467788754
Q ss_pred CCC-CCcceeEEEeceeecCCCCcCCccc
Q 016742 228 SHV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (383)
Q Consensus 228 ~~~-~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (383)
... .+.-.+|++.++.|.++. +.=|++
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCCCCceEEEEEEEccEEecCC-cceEEe
Confidence 221 223358999999887753 444554
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.25 E-value=2.3e-05 Score=67.33 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=88.6
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 016742 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (383)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~ 226 (383)
||.+.+..++.|++.+|+.. ..+||.+. .+..+.|+.|+|.+...+ |.+. ...+++|++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57787788899999999975 46899997 677789999999995555 6664 458999999999987744444322
Q ss_pred CCCCCCcceeEEEeceeecCCCCcCCccc--cCeeEEEcceEEccccceeeecCCc--eEEEEceEEecCC
Q 016742 227 PSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNYTRNWGIYAVCASVDS--QIYSQCNIYEAGQ 293 (383)
Q Consensus 227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~a~~~~~~a--~i~~e~Nyf~~g~ 293 (383)
.++++.+|.|.++..-.=.+. ...+.+.||.+.+-...++...... .+.+++|.|....
T Consensus 76 --------~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 76 --------SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG 138 (158)
T ss_dssp --------CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred --------CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence 267888888887755433332 2357899999988776676666555 8888999988654
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.24 E-value=3.7e-05 Score=80.07 Aligned_cols=102 Identities=25% Similarity=0.452 Sum_probs=74.6
Q ss_pred EeeeccEEEeeeEEecCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCC
Q 016742 150 LKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPS 228 (383)
Q Consensus 150 i~~a~NVIIRnL~ir~g~-~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~ 228 (383)
+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++++|+|++|.+.. ..++-||+...
T Consensus 166 i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg~ 242 (456)
T PLN03003 166 ISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLGK 242 (456)
T ss_pred EeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeeccC
Confidence 334666666666666542 3457999997 799999999999988776 8999899999999999853 34677887543
Q ss_pred CC-CCcceeEEEeceeecCCCCcCCccc
Q 016742 229 HV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (383)
Q Consensus 229 ~~-~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (383)
.. .+.-.+|++.++.|.++. +.=|++
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred CCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 21 223468999999998863 334554
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.22 E-value=7.4e-05 Score=77.25 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=74.6
Q ss_pred chHHHhhhcCC-CeEEEEEeceEEEecceeEeccCcceeeeccceE---EeCCc-EE-EeeeccEEEeeeEEecCCC---
Q 016742 98 GSLREGCRMKE-PLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFEGGKG--- 168 (383)
Q Consensus 98 GSLr~ai~~~~-Pr~IVf~vsG~I~l~~~l~V~snkTI~G~G~gi~---I~G~g-l~-i~~a~NVIIRnL~ir~g~~--- 168 (383)
..|++||++.. +...|.--.|+. +..+|.+.+++||.|+. +++ |.|.+ +. -..++||.|++|+|++...
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G~Y-~~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPGVY-RTGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCCce-ecccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 34999987633 222222256776 34779999999999984 443 66554 32 2359999999999997532
Q ss_pred CCCCceEecCCCceEEEEceeeecCC-CCceEeecCCceEEEeCcee
Q 016742 169 PDVDAIQIKPKSKHIWIDRCSLRDYD-DGLIDITRESTDITVSRCHF 214 (383)
Q Consensus 169 ~d~DaI~i~~~s~nVwIDHcs~s~~~-Dglidi~~~s~~VTIS~n~f 214 (383)
...-+|.+. +++++-|.+|.|.... .| |++. +++ ..|++|.|
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I 175 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTI 175 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceE
Confidence 234577885 8999999999999984 77 5663 355 44444433
No 10
>PLN02793 Probable polygalacturonase
Probab=98.20 E-value=2.7e-05 Score=80.99 Aligned_cols=104 Identities=22% Similarity=0.358 Sum_probs=75.8
Q ss_pred EEEeeeccEEEeeeEEecCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 016742 148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~-~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~ 226 (383)
|.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++++|+|++|.+. +..++-||+.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~-~GhGisIGSl 279 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACG-PGHGISIGSL 279 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEe-CCccEEEecc
Confidence 44456777888888877543 3467999997 899999999999877665 889888999999999985 3345778875
Q ss_pred CC-CCCCcceeEEEeceeecCCCCcCCccc
Q 016742 227 PS-HVADRCIRVTIHHCFFDGTRQRHPRVR 255 (383)
Q Consensus 227 d~-~~~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (383)
.. .....-.+|++.++.|.++. +.=|++
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~-~GirIK 308 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTD-NGVRIK 308 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCC-ceEEEE
Confidence 32 12222358999999988764 444553
No 11
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.17 E-value=0.00014 Score=72.34 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=98.0
Q ss_pred cCcceeeeccceEEe---CCcEEEeeeccEEEeeeEEecCCC----CCCCceEecCCCceEEEEceeeecCCCCceEeec
Q 016742 130 SYKTIDGRGQRVKLT---GKGLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR 202 (383)
Q Consensus 130 snkTI~G~G~gi~I~---G~gl~i~~a~NVIIRnL~ir~g~~----~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~ 202 (383)
+++||.+. +|. +.+|.+.+++|++||++++..... ...+||.+. .++++.|.+|.++...|--|.+ .
T Consensus 63 ~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-~ 136 (314)
T TIGR03805 63 DDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-G 136 (314)
T ss_pred CCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-C
Confidence 56677665 222 347888889999999999974421 236889987 7999999999999887744666 4
Q ss_pred CCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEeceeecCCCCcC--------CccccCeeEEEcceEEcccc---
Q 016742 203 ESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--------PRVRYAKVHLYNNYTRNWGI--- 271 (383)
Q Consensus 203 ~s~~VTIS~n~f~~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~--------Pr~r~G~~hv~NN~~~n~~~--- 271 (383)
.+++++|++|.+.+..+++.+-.+. ++.+.+|.+.++..-- |.+....+.++||.+.+...
T Consensus 137 ~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~ 208 (314)
T TIGR03805 137 QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNF 208 (314)
T ss_pred CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCC
Confidence 6889999999998766776655432 3556666665543211 11112346677776653211
Q ss_pred -------------ceeeecCCceEEEEceEEecCCcc
Q 016742 272 -------------YAVCASVDSQIYSQCNIYEAGQKK 295 (383)
Q Consensus 272 -------------~a~~~~~~a~i~~e~Nyf~~g~~~ 295 (383)
.++.......+.+++|.|......
T Consensus 209 ~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~ 245 (314)
T TIGR03805 209 APAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTA 245 (314)
T ss_pred cccCCceecCCCCcEEEEEcccceEEECCEEeCCcce
Confidence 122222235677888988876544
No 12
>PLN02218 polygalacturonase ADPG
Probab=98.15 E-value=0.00018 Score=74.58 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=92.7
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
|++.+++||.|++|+|+.... =.|.+. .+++|+|++.++.. ..|| ||+ ..+++|+|++|.|..-+-+.-
T Consensus 195 i~f~~~~nv~I~gitl~nSp~---w~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQ---IQISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCC---EEEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 566789999999999998654 357776 79999999999864 6899 899 468999999999998887777
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCCcCCccc----------cCeeEEEcceEEccccceee-----e--cCCceEEEE
Q 016742 223 IGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR----------YAKVHLYNNYTRNWGIYAVC-----A--SVDSQIYSQ 285 (383)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r----------~G~~hv~NN~~~n~~~~a~~-----~--~~~a~i~~e 285 (383)
|.+.. .+|++.++++..... =.+. .-.++|.|+.+.+.. +++. + +.-..|.++
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHG--isIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ 338 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHG--ISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQ 338 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCC--EEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEE
Confidence 76531 378888887743222 0111 013567777766643 2331 1 122356677
Q ss_pred ceEEecCCccceee
Q 016742 286 CNIYEAGQKKMAFK 299 (383)
Q Consensus 286 ~Nyf~~g~~~~~~~ 299 (383)
+..+++...+..++
T Consensus 339 ni~m~~V~~pI~Id 352 (431)
T PLN02218 339 NIQMENVKNPIIID 352 (431)
T ss_pred eEEEEcccccEEEE
Confidence 77777766555443
No 13
>PLN02155 polygalacturonase
Probab=98.13 E-value=3.4e-05 Score=79.13 Aligned_cols=102 Identities=18% Similarity=0.346 Sum_probs=75.4
Q ss_pred EEeeeccEEEeeeEEecCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 016742 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~-~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d 227 (383)
.+..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++|+|++|.+.. ..++-||+..
T Consensus 172 ~~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g 248 (394)
T PLN02155 172 TLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLA 248 (394)
T ss_pred EEECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccc
Confidence 3345677777777776532 3557999997 799999999999988885 8998889999999998863 4467789853
Q ss_pred CC-CCCcceeEEEeceeecCCCCcCCcc
Q 016742 228 SH-VADRCIRVTIHHCFFDGTRQRHPRV 254 (383)
Q Consensus 228 ~~-~~d~~~~VT~hhN~f~~~~~R~Pr~ 254 (383)
.. ....-.+|++.+|.|.++. |.=|+
T Consensus 249 ~~~~~~~V~nV~v~n~~~~~t~-~GirI 275 (394)
T PLN02155 249 KELNEDGVENVTVSSSVFTGSQ-NGVRI 275 (394)
T ss_pred ccCCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence 22 1233458999999998763 34444
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.13 E-value=4.2e-05 Score=78.67 Aligned_cols=95 Identities=21% Similarity=0.409 Sum_probs=70.7
Q ss_pred eeeccEEEeeeEEecCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCC-
Q 016742 151 KECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPS- 228 (383)
Q Consensus 151 ~~a~NVIIRnL~ir~g~-~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~- 228 (383)
..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.| +|.++.++++|+|++|... +..++-||+-..
T Consensus 184 ~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~-~ghGisiGSlG~~ 260 (404)
T PLN02188 184 VECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCG-PGHGISVGSLGRY 260 (404)
T ss_pred EccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEc-CCCcEEeCCCCCC
Confidence 34667777777776432 3457999997 79999999999998888 5899888999999999885 445677887432
Q ss_pred CCCCcceeEEEeceeecCCC
Q 016742 229 HVADRCIRVTIHHCFFDGTR 248 (383)
Q Consensus 229 ~~~d~~~~VT~hhN~f~~~~ 248 (383)
.....-.+|++.++.|.++.
T Consensus 261 ~~~~~V~nV~v~n~~~~~t~ 280 (404)
T PLN02188 261 PNEGDVTGLVVRDCTFTGTT 280 (404)
T ss_pred CcCCcEEEEEEEeeEEECCC
Confidence 11122358999999998763
No 15
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.11 E-value=0.0001 Score=67.54 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=66.1
Q ss_pred hHHHhh--hcCCCeEEEEEeceEEEecceeEeccCcceeeeccce-EEe--CCc--E-------EEeee-cc--EEEeee
Q 016742 99 SLREGC--RMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRV-KLT--GKG--L-------RLKEC-EH--VIICNL 161 (383)
Q Consensus 99 SLr~ai--~~~~Pr~IVf~vsG~I~l~~~l~V~snkTI~G~G~gi-~I~--G~g--l-------~i~~a-~N--VIIRnL 161 (383)
.|++|| .+....-+|+-..|+..++..|.+.++++|.|.|... .+. +.. + .+... .+ +-|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 489999 3333344556589999999999999999999997633 333 111 1 11111 12 449999
Q ss_pred EEecCCCC---CCCceEecCCCceEEEEceeeecCCCCceEee
Q 016742 162 EFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT 201 (383)
Q Consensus 162 ~ir~g~~~---d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~ 201 (383)
+|...... ..++|.+. .++++||++|++.......+.+.
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE
Confidence 99976532 24778886 78999999999998654445654
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.89 E-value=5.3e-05 Score=75.58 Aligned_cols=105 Identities=28% Similarity=0.488 Sum_probs=76.7
Q ss_pred cEEEeeeccEEEeeeEEecCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecC
Q 016742 147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA 225 (383)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~-~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~ 225 (383)
.+.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+....|. |.++.++.+|+|++|.|. +..++-||+
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~-~ghGisiGS 193 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCS-GGHGISIGS 193 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEE-SSSEEEEEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEe-ccccceeee
Confidence 366667999999999998653 2457999997 789999999999887665 889877789999999996 345577786
Q ss_pred CCCCC-CCcceeEEEeceeecCCCCcCCccc
Q 016742 226 DPSHV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (383)
Q Consensus 226 ~d~~~-~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (383)
..... ...-.+|+|.++.|.++. |.-|++
T Consensus 194 ~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 194 EGSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp ESSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred ccCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 43221 111248999999888763 555553
No 17
>PLN03010 polygalacturonase
Probab=97.86 E-value=0.0027 Score=65.55 Aligned_cols=99 Identities=23% Similarity=0.422 Sum_probs=63.3
Q ss_pred eccEEEeeeEEecCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCC-C
Q 016742 153 CEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH-V 230 (383)
Q Consensus 153 a~NVIIRnL~ir~g~-~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~~-~ 230 (383)
++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++++|.++... ...++-||+.... .
T Consensus 188 ~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~ 264 (409)
T PLN03010 188 CNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCG-PGHGISVGSLGADGA 264 (409)
T ss_pred cccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCC
Confidence 344444444444321 2457999997 799999999999888655 899888777777655553 2335667875322 1
Q ss_pred CCcceeEEEeceeecCCCCcCCccc
Q 016742 231 ADRCIRVTIHHCFFDGTRQRHPRVR 255 (383)
Q Consensus 231 ~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (383)
.+.-.+|++.++.|.++. +.=|++
T Consensus 265 ~~~V~nV~v~n~~i~~t~-~GirIK 288 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQTT-NGARIK 288 (409)
T ss_pred CCeeEEEEEEeeEEeCCC-cceEEE
Confidence 222358999999887753 334443
No 18
>PLN03010 polygalacturonase
Probab=97.85 E-value=0.00071 Score=69.83 Aligned_cols=172 Identities=22% Similarity=0.281 Sum_probs=108.1
Q ss_pred EEEEeceEEEecce------------eEec--cCcceeeeccceEEeCCc------EEEeeeccEEEeeeEEecCCCCCC
Q 016742 112 IVFEVSGTIHLRSH------------LSVS--SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFEGGKGPDV 171 (383)
Q Consensus 112 IVf~vsG~I~l~~~------------l~V~--snkTI~G~G~gi~I~G~g------l~i~~a~NVIIRnL~ir~g~~~d~ 171 (383)
|.|.+.|+|..... +... .|++|.|.| +|.|.| |++.+++||.|++|+++....
T Consensus 107 v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~--- 180 (409)
T PLN03010 107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPK--- 180 (409)
T ss_pred EEEEEccEEEccCChhhccCCCCcceEEEecccccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCc---
Confidence 55666787765431 2222 678888853 577755 778899999999999997653
Q ss_pred CceEecCCCceEEEEceeee-----cCCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEeceeecC
Q 016742 172 DAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDG 246 (383)
Q Consensus 172 DaI~i~~~s~nVwIDHcs~s-----~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~ 246 (383)
=.|.+. .+++|.|++..+. ...|| ||+ ..+++|+|++|.|..-+-+.-|..... ..+|+.-.|...|
T Consensus 181 ~~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gH 252 (409)
T PLN03010 181 NHISIK-TCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGH 252 (409)
T ss_pred eEEEEe-ccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcC
Confidence 346676 7899999999985 46899 898 468999999999998888888775421 1344444443221
Q ss_pred C-----CCcCCc-cccCeeEEEcceEEccccceee-----ecC--CceEEEEceEEecCCcccee
Q 016742 247 T-----RQRHPR-VRYAKVHLYNNYTRNWGIYAVC-----ASV--DSQIYSQCNIYEAGQKKMAF 298 (383)
Q Consensus 247 ~-----~~R~Pr-~r~G~~hv~NN~~~n~~~~a~~-----~~~--~a~i~~e~Nyf~~g~~~~~~ 298 (383)
- ..+... -..-.++|.|+.+.+.. +++. ++. =..|.+++-.++....+..+
T Consensus 253 GisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I 316 (409)
T PLN03010 253 GISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKTWQGGQGYARNISFENITLINTKNPIII 316 (409)
T ss_pred CEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence 1 000000 00114678888777643 2321 111 12456666666665555443
No 19
>PLN02480 Probable pectinesterase
Probab=97.81 E-value=0.0022 Score=64.82 Aligned_cols=117 Identities=11% Similarity=0.232 Sum_probs=76.9
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccc-eEEeCC----------cEEEe
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQR-VKLTGK----------GLRLK 151 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~g-i~I~G~----------gl~i~ 151 (383)
+.+|.| ||++||++- ..+++||-..|+.+ ++|.| ++|+||.|.|.. ..|.+. .|.|.
T Consensus 53 a~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~ 130 (343)
T PLN02480 53 DINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE 130 (343)
T ss_pred CCCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE
Confidence 334544 799999763 23556666679884 67778 367999998733 334321 25554
Q ss_pred eeccEEEeeeEEecCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 152 ~a~NVIIRnL~ir~g~~------~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+++++++||+|+...+ ...-|+-+.-.+.++.|.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 131 -a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~Ie 196 (343)
T PLN02480 131 -APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQ 196 (343)
T ss_pred -CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEE
Confidence 8999999999997632 12345555435789999999998887777643 123444555554
No 20
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.73 E-value=0.0021 Score=62.08 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=78.3
Q ss_pred hHHHhhhcCCCeEEEEEeceEEEecc----eeEeccCcceeee----cc----------ceEEeCCc-------EEEeee
Q 016742 99 SLREGCRMKEPLWIVFEVSGTIHLRS----HLSVSSYKTIDGR----GQ----------RVKLTGKG-------LRLKEC 153 (383)
Q Consensus 99 SLr~ai~~~~Pr~IVf~vsG~I~l~~----~l~V~snkTI~G~----G~----------gi~I~G~g-------l~i~~a 153 (383)
+|.+|++...|..+|.--.|++.-.. +|.+.+.++|.|. |. ++.|.|.+ +.|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 58899988877776666779987543 5888889999985 33 22334433 444457
Q ss_pred ccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecC-CCCceEeec-----CCceEEEeCceecCCCc
Q 016742 154 EHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITR-----ESTDITVSRCHFSSHDK 219 (383)
Q Consensus 154 ~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~-~Dglidi~~-----~s~~VTIS~n~f~~H~k 219 (383)
++..|+.++|+......+-||.|+ .+ +.-|..|+|..+ .+| |.+.. ...+++|+.|.+.....
T Consensus 97 ~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~G-I~v~g~~~~~~i~~~vI~GN~~~~~~~ 165 (246)
T PF07602_consen 97 NNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREG-IFVTGTSANPGINGNVISGNSIYFNKT 165 (246)
T ss_pred CCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCcccc-EEEEeeecCCcccceEeecceEEecCc
Confidence 788889999987643346688886 33 778899999985 555 43322 23456677776654333
No 21
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.72 E-value=0.0021 Score=65.56 Aligned_cols=183 Identities=17% Similarity=0.272 Sum_probs=134.5
Q ss_pred CeEEecCCCCCCCchHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeeeccceEEeCC---cEEEe---------e
Q 016742 85 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRLK---------E 152 (383)
Q Consensus 85 ~v~~VTnl~d~g~GSLr~ai~~~~Pr~IVf~vsG~I~l~~~l~V~snkTI~G~G~gi~I~G~---gl~i~---------~ 152 (383)
++|.+-=.+| |.+||.+-.. |..+.+-+..+.++|.|.+..+|+|+|+.+.|.+. +|.+. +
T Consensus 47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 3456666666 9999998762 45677788888899999999999999999888643 25442 3
Q ss_pred eccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCC
Q 016742 153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD 232 (383)
Q Consensus 153 a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d~~~~d 232 (383)
-.+|.+.|++|.... ..-|+-+. ...++.|--|.|....--.|+.. ....|..|.|..-+|++...+
T Consensus 120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~------- 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG------- 186 (386)
T ss_pred eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence 579999999999754 24567676 67899999999999888888775 468899999988888775322
Q ss_pred cceeEEEeceeecCCCCcCCccccCeeEEEcceEEccccceeeecCCceEEEEceEEecCC
Q 016742 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293 (383)
Q Consensus 233 ~~~~VT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~a~~~~~~a~i~~e~Nyf~~g~ 293 (383)
..++++.+|.|..+.-=- +..|...+.+|...+-.= .+-.. ..-.+.+|.|....
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~C-f~l~~--g~g~i~~N~v~~~~ 241 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECGC-FVLMK--GTGSIKHNMVCGPN 241 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccce-EEEEc--ccEEEeccEEeCCC
Confidence 236888999998875432 345888999998887642 22222 23344688887543
No 22
>PLN02793 Probable polygalacturonase
Probab=97.71 E-value=0.0035 Score=65.43 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=89.4
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
|++.+++||.|++|+++....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|++|.|..-+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 6777899999999999976532 46666 78999999999963 6899 898 468999999999998888887
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC-------cCCc-cccCeeEEEcceEEccccceee-----ec--CCceEEEEce
Q 016742 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAVC-----AS--VDSQIYSQCN 287 (383)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhN~f~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~a~~-----~~--~~a~i~~e~N 287 (383)
+.... .+|++.++.+..... +... -..-.+.+.|+.+.+.. +++. ++ .-..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 76431 267887776633211 1000 00113677777777643 2321 11 1124555665
Q ss_pred EEecCCcccee
Q 016742 288 IYEAGQKKMAF 298 (383)
Q Consensus 288 yf~~g~~~~~~ 298 (383)
..++...+...
T Consensus 326 ~m~nv~~pI~I 336 (443)
T PLN02793 326 FMENVSNPIII 336 (443)
T ss_pred EEecCCceEEE
Confidence 56555544443
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.71 E-value=0.00047 Score=59.09 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=71.8
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCc-eeEecC
Q 016742 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TMLIGA 225 (383)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k-~~LiG~ 225 (383)
+|.+...+++.|++-+|+. ...+|.+. ...++.|+.|.|++...+ +.+. .+..++|++|.|.+... ++.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~~-i~~~-~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGSG-IYVS-GSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SEE-EECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccce-EEEE-ecCCceecCcEEEcCCCccEEEec
Confidence 5666666667788888876 35777776 567788888888877733 4553 56788888888876544 444432
Q ss_pred CCCCCCCcceeEEEeceeecCCCCcCCcccc-C--eeEEEcceEEccccceeeecCCce-EEEEceEE
Q 016742 226 DPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-A--KVHLYNNYTRNWGIYAVCASVDSQ-IYSQCNIY 289 (383)
Q Consensus 226 ~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G--~~hv~NN~~~n~~~~a~~~~~~a~-i~~e~Nyf 289 (383)
....+++.+|.|.++....=.+.. . .+-+.+|.+++-..+++....... +.+.+|.|
T Consensus 98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 012577888888777643333322 2 566788888777667775554444 66677765
No 24
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.70 E-value=0.0025 Score=66.59 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=77.3
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
|++.+++||.|++|+++.... =.|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus 141 l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIa 214 (456)
T PLN03003 141 LKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIA 214 (456)
T ss_pred EEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEE
Confidence 677789999999999997643 356676 78999999999864 5899 899 468999999999998888887
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC-------cCCcc-ccCeeEEEcceEEcc
Q 016742 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNW 269 (383)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~ 269 (383)
|.+.. .+|++-++.+..... +.... ..-.+++.|+.+.+.
T Consensus 215 iksgs-------~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 215 INSGT-------SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred eCCCC-------ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 77542 256676665532211 10000 011367888877764
No 25
>PLN02197 pectinesterase
Probab=97.64 E-value=0.011 Score=63.57 Aligned_cols=132 Identities=22% Similarity=0.359 Sum_probs=83.2
Q ss_pred ccccccCCCcccccCCCCCCCCCCeEEecCCCCCCCc---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cC
Q 016742 62 CSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SY 131 (383)
Q Consensus 62 ~~~~a~~~~aeGfg~~ttGG~gG~v~~VTnl~d~g~G---SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn 131 (383)
..++.|. +.+.|+.+-||.++.+-..-..+.+|.| |+++||++ ...|+||+-..|+.+ +.+.|. +|
T Consensus 251 ~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~n 326 (588)
T PLN02197 251 ADRKLMA--KAGRGANAGGGGGGKIKATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNN 326 (588)
T ss_pred cchhhhc--cCcccccccccccccccccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCce
Confidence 3455554 3444556666665654322224556766 68899965 224666666779984 567774 68
Q ss_pred cceeeeccceEEe-C-------Cc--------EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCC
Q 016742 132 KTIDGRGQRVKLT-G-------KG--------LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD 194 (383)
Q Consensus 132 kTI~G~G~gi~I~-G-------~g--------l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~ 194 (383)
+||.|.|.+-+|. + .| |.+ .+++++.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..
T Consensus 327 i~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ 405 (588)
T PLN02197 327 IFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ 405 (588)
T ss_pred EEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC
Confidence 9999997644443 1 11 333 489999999999986432 2234444335788999999998766
Q ss_pred CCce
Q 016742 195 DGLI 198 (383)
Q Consensus 195 Dgli 198 (383)
|=|+
T Consensus 406 DTLy 409 (588)
T PLN02197 406 DTLY 409 (588)
T ss_pred cceE
Confidence 6554
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.61 E-value=0.0024 Score=60.11 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=51.4
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 016742 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (383)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~ 226 (383)
||.+..+++++|++-.|+... .||.+. .+.+..|..|.|+....| |.+. ++.+.+|+.|.|.+...++.+-.+
T Consensus 59 GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~G-I~l~-~s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYG-IYLY-GSSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCce-EEEe-eCCceEEECcEEeCCCEEEEEEeC
Confidence 345555555555555555431 555554 344446666666655554 3332 345556666666555555544332
Q ss_pred CCCCCCcceeEEEeceeecCCCCcCCc-cc-cCeeEEEcceE
Q 016742 227 PSHVADRCIRVTIHHCFFDGTRQRHPR-VR-YAKVHLYNNYT 266 (383)
Q Consensus 227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr-~r-~G~~hv~NN~~ 266 (383)
. +.++.+|.|.++..---. +. .....+++|.|
T Consensus 132 ~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 132 S--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred C--------CCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 1 345556666555322222 11 12345555555
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.57 E-value=0.0015 Score=61.50 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCcEEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEec
Q 016742 145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG 224 (383)
Q Consensus 145 G~gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG 224 (383)
..++.+..++++.|++.+|+.. ..||.+. .+.++-|..|.++....| |.+.. +.+.+|++|.|.+...++++.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~~-s~~~~I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLMG-SSNNTISNNTISNNGYGIYLY 107 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEEc-CCCcEEECCEecCCCceEEEe
Confidence 3456677799999999999975 5789887 688899999999999988 55644 455599999999877777665
Q ss_pred CCCCCCCCcceeEEEeceeecCCCCcCCcccc-CeeEEEcceEEccccceee-ecCCceEEEEceEEec
Q 016742 225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVC-ASVDSQIYSQCNIYEA 291 (383)
Q Consensus 225 ~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~a~~-~~~~a~i~~e~Nyf~~ 291 (383)
.+. ..++.+|.|. ....-=.+.. ....+.+|.+.+-..+++. ........+.+|+|.+
T Consensus 108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 443 3688888887 3333333332 4678999998887567777 4445556778999943
No 28
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.34 E-value=0.0084 Score=61.93 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=91.5
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
|.+..++||.|++|+|+.... =.|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~---w~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKF---FHIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCC---eEEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 466789999999999998653 356676 78999999999864 6799 898 468999999999998888888
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC-------cCCc-cccCeeEEEcceEEccccceeee---------cCCceEEEE
Q 016742 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAVCA---------SVDSQIYSQ 285 (383)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhN~f~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~a~~~---------~~~a~i~~e 285 (383)
+.... .+|++-++.+..... +..- -....+.+.|+.+.+.. +++.. +.-..|.++
T Consensus 232 iksg~-------~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGN-------SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCC-------ccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 86432 157776666543211 0000 00124678888887753 33322 111356677
Q ss_pred ceEEecCCcccee
Q 016742 286 CNIYEAGQKKMAF 298 (383)
Q Consensus 286 ~Nyf~~g~~~~~~ 298 (383)
+-.++....+..+
T Consensus 304 ni~m~~v~~pI~i 316 (404)
T PLN02188 304 NIVMNNVTNPIII 316 (404)
T ss_pred eEEecCccceEEE
Confidence 7777776655544
No 29
>PLN02155 polygalacturonase
Probab=97.32 E-value=0.0072 Score=62.19 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=89.9
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeee-----cCCCCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s-----~~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
|++.+++||.|++|+++.... =.|.+. .+++|.|++.++. ...|| ||+ ..+++|+|++|.|..-+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 677789999999999997643 346665 7899999999995 35798 788 468999999999998887887
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCC-------CcCCc-cccCeeEEEcceEEccccceeee----c-CC---ceEEEEc
Q 016742 223 IGADPSHVADRCIRVTIHHCFFDGTR-------QRHPR-VRYAKVHLYNNYTRNWGIYAVCA----S-VD---SQIYSQC 286 (383)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhN~f~~~~-------~R~Pr-~r~G~~hv~NN~~~n~~~~a~~~----~-~~---a~i~~e~ 286 (383)
|+... .+|++.++.+.... .+.+. -..-.+.+.|+.+.+.. +++.. + .+ ..|.+++
T Consensus 222 ik~gs-------~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n 293 (394)
T PLN02155 222 IGPGT-------RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD 293 (394)
T ss_pred cCCCC-------ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence 76542 26777776654311 12221 11124678888887643 34322 1 11 2445555
Q ss_pred eEEecCCcccee
Q 016742 287 NIYEAGQKKMAF 298 (383)
Q Consensus 287 Nyf~~g~~~~~~ 298 (383)
-.++....+..+
T Consensus 294 i~m~~v~~pI~i 305 (394)
T PLN02155 294 LVMKNVENPIII 305 (394)
T ss_pred EEEcCccccEEE
Confidence 555555544443
No 30
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.31 E-value=0.0022 Score=64.12 Aligned_cols=89 Identities=21% Similarity=0.453 Sum_probs=68.8
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
|++.+++|+.|++|+++....+ .+.+. .+++|+|++.++.. ..|| ||+. .+++|+|.+|.|...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~~-~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDID-SSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEEE-SEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEEE-eeeEEEEEEeecccccCccc
Confidence 7888899999999999986543 57776 79999999999963 4799 7984 68999999999998877776
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC
Q 016742 223 IGADPSHVADRCIRVTIHHCFFDGTRQ 249 (383)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhN~f~~~~~ 249 (383)
+.+.. .+|++.+++|.+...
T Consensus 169 iks~~-------~ni~v~n~~~~~ghG 188 (326)
T PF00295_consen 169 IKSGS-------GNILVENCTCSGGHG 188 (326)
T ss_dssp ESSEE-------CEEEEESEEEESSSE
T ss_pred ccccc-------cceEEEeEEEecccc
Confidence 66532 178898998865433
No 31
>PLN02176 putative pectinesterase
Probab=97.24 E-value=0.0045 Score=62.46 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--CC--------cEEEee
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKE 152 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~--G~--------gl~i~~ 152 (383)
+.+|.| |+++||++- ..+++|+-..|+.+ +.|.|. +|+||.|.|..-+|. +. .+.+ .
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~ 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence 445665 788999652 23555665679984 667773 689999997654443 11 2455 4
Q ss_pred eccEEEeeeEEecCCC-------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 153 CEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 153 a~NVIIRnL~ir~g~~-------~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+++++.+||+|+.... ...-|+-+.-.+.++.+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIe 187 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVIS 187 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEE
Confidence 8999999999997532 11233433334788999999999888877653 234455666665
No 32
>PLN02432 putative pectinesterase
Probab=97.18 E-value=0.022 Score=56.43 Aligned_cols=111 Identities=15% Similarity=0.270 Sum_probs=73.3
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe----C------CcEEEeeeccEEEeee
Q 016742 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----G------KGLRLKECEHVIICNL 161 (383)
Q Consensus 99 SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~gi~I~----G------~gl~i~~a~NVIIRnL 161 (383)
|+++||++- ..+++||-..|+. .+.|.| .+|+||.|.+..-++. + ..+.+ .++|++++||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 678888652 2245555567887 466777 3799999997544443 1 11444 4899999999
Q ss_pred EEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 162 EFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 162 ~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+|+...+...-|+-+.-.+.++.+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 102 t~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~ 152 (293)
T PLN02432 102 TIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE 152 (293)
T ss_pred EEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence 999764433344444334788999999999888877642 234455666665
No 33
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.17 E-value=0.026 Score=60.42 Aligned_cols=118 Identities=22% Similarity=0.485 Sum_probs=77.4
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------E
Q 016742 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~G~-----g--------l 148 (383)
+.+|.| ++++||++ ...|+||+-..|+.+ +.+.|. +|+||+|.|.+-+| .+. + |
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 445666 67888865 335677776789884 567773 78999999865444 331 1 4
Q ss_pred EEeeeccEEEeeeEEecCCCC---CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeecCCceEE
Q 016742 149 RLKECEHVIICNLEFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDIT 208 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~---d~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~VT 208 (383)
.+. +++++.|||+|+...+. ..-|+.+ .+.++.+-+|.|.-..|=| +|+.-+.-.+-
T Consensus 313 ~v~-~~~F~a~nitf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 389 (541)
T PLN02416 313 AVS-GEGFLARDITIENTAGPEKHQAVALRV--NADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVV 389 (541)
T ss_pred EEE-CCCeEEEeeEEEECCCCCCCceEEEEE--cCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEE
Confidence 444 89999999999976432 2345555 4788999999997655444 44434444555
Q ss_pred EeCceec
Q 016742 209 VSRCHFS 215 (383)
Q Consensus 209 IS~n~f~ 215 (383)
+++|.|.
T Consensus 390 fq~c~i~ 396 (541)
T PLN02416 390 FQACNIV 396 (541)
T ss_pred EeccEEE
Confidence 6666664
No 34
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.16 E-value=0.0051 Score=63.87 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=43.4
Q ss_pred ceeeeccceEEeCCcEEEeeeccEEEeeeEEecCCC-------------------CCCCceEecCCCceEEEEceeeecC
Q 016742 133 TIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG-------------------PDVDAIQIKPKSKHIWIDRCSLRDY 193 (383)
Q Consensus 133 TI~G~G~gi~I~G~gl~i~~a~NVIIRnL~ir~g~~-------------------~d~DaI~i~~~s~nVwIDHcs~s~~ 193 (383)
||.|.|....-...+|.++.|+++.|++.+|++... ....+|.+. .++++.|.+++++..
T Consensus 123 tIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V~~N~I~g~ 201 (455)
T TIGR03808 123 TLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIVARNTIIGA 201 (455)
T ss_pred EEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEEECCEEEcc
Confidence 444444333333446788889999999999987520 012345554 566888888888887
Q ss_pred CCCceEee
Q 016742 194 DDGLIDIT 201 (383)
Q Consensus 194 ~Dglidi~ 201 (383)
.|+.|.+.
T Consensus 202 RD~gi~i~ 209 (455)
T TIGR03808 202 NDNGIEIL 209 (455)
T ss_pred CCCCeEEE
Confidence 77555443
No 35
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.10 E-value=0.038 Score=58.82 Aligned_cols=103 Identities=24% Similarity=0.440 Sum_probs=68.2
Q ss_pred CCCCCc---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------
Q 016742 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG-------- 147 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~-----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G-----~g-------- 147 (383)
+.+|.| ++++||++. ..|++|+-..|+.+ +.|.|. +|+||+|.|.+-+|. + .+
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 445655 678899631 23666776789984 667773 799999998654442 2 11
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 016742 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
+.+ .+++++.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..|=|+
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy 358 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLY 358 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence 333 489999999999976432 12344333347889999999976655544
No 36
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.037 Score=60.48 Aligned_cols=197 Identities=19% Similarity=0.358 Sum_probs=112.2
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 016742 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------l 148 (383)
+.+|.| ++++||++ ...|+||+-..|++ .+.|.|. .|+||+|.|.+-+|. +. | |
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 445666 68889865 22366666667987 4567774 578999998655443 21 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 016742 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dglidi~~~s~~VTIS 210 (383)
.+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-.. .|.+|+.-+....-++
T Consensus 333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence 34 489999999999976432 2244444435788999999996543 4455555555667788
Q ss_pred CceecCCC-----ceeEecCCCCCCCCcceeEEEeceeecCCCCcC------------CccccCeeEEEcceEEc-----
Q 016742 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH------------PRVRYAKVHLYNNYTRN----- 268 (383)
Q Consensus 211 ~n~f~~H~-----k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n----- 268 (383)
+|.|.... ++.+--.+.. ..+...-+.||+|.+.....-. |.-.+..+-+.|.++.+
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P~ 490 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPE 490 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcCc
Confidence 88885321 1222111100 0111235789999886643211 11113456677766543
Q ss_pred -cccceeeecCCceEEEEceEEecCC
Q 016742 269 -WGIYAVCASVDSQIYSQCNIYEAGQ 293 (383)
Q Consensus 269 -~~~~a~~~~~~a~i~~e~Nyf~~g~ 293 (383)
|..+.-......-.+.|.+-+.+|.
T Consensus 491 GW~~W~~~~~~~t~~yaEY~n~GpGa 516 (670)
T PLN02217 491 GWQPWLGDFGLNTLFYSEVQNTGPGA 516 (670)
T ss_pred ccCccCCCCCCCceEEEEeccccCCC
Confidence 3221111122333456766666664
No 37
>PLN02773 pectinesterase
Probab=96.93 E-value=0.068 Score=53.60 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=69.2
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-e-----------------CC------c
Q 016742 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-T-----------------GK------G 147 (383)
Q Consensus 99 SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~-----------------G~------g 147 (383)
|+++||++- ..+++||-..|+.+ +.|.|. +++||.|++..-+| . |. .
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 688888652 23555665679874 667773 57999998753333 2 10 1
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+.+ .++|++.+||+|+..... ..-|+-+.-.+..+.+.+|.|.-..|=|++-. ..--+.+|.|.
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~---gr~yf~~c~Ie 161 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY---GKQYLRDCYIE 161 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC---CCEEEEeeEEe
Confidence 334 489999999999976421 22333333347889999999987776665421 23344455554
No 38
>PLN02682 pectinesterase family protein
Probab=96.90 E-value=0.078 Score=54.21 Aligned_cols=111 Identities=14% Similarity=0.239 Sum_probs=71.0
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEEe
Q 016742 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRLK 151 (383)
Q Consensus 99 SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~gi~I~------------G~--------gl~i~ 151 (383)
|+++||++- ..+++|+-..|+.+ +.|.| .+++||.|.|..-++. |. .+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 688888652 23455555679884 66777 4789999997543332 10 1344
Q ss_pred eeccEEEeeeEEecCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 152 ~a~NVIIRnL~ir~g~~------~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
.+++++.+||+|+.... ...-|+-+.-.+.++.+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 227 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE 227 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence 48999999999997532 11123333324788999999998877776653 223445566554
No 39
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.89 E-value=0.084 Score=56.35 Aligned_cols=104 Identities=22% Similarity=0.403 Sum_probs=68.2
Q ss_pred CCCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--------CC------c
Q 016742 92 LADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------G 147 (383)
Q Consensus 92 l~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~--------G~------g 147 (383)
.+.+|.| |+++||++- ..|+||+-..|+.+ +.|.|. +|+||.|.|.+-+|. |. .
T Consensus 222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT 299 (530)
T PLN02933 222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT 299 (530)
T ss_pred ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence 3445665 688898652 23566666679985 667773 688999997544332 11 1
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 016742 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
+.+ .+++++.|||+|+...+. ..-|+-++-.+..+-+.+|.|.-..|=|+
T Consensus 300 ~~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy 350 (530)
T PLN02933 300 VGV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLY 350 (530)
T ss_pred EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccc
Confidence 344 389999999999976432 22344443347889999999976655544
No 40
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.88 E-value=0.066 Score=57.39 Aligned_cols=120 Identities=18% Similarity=0.434 Sum_probs=78.1
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------c------E
Q 016742 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------G------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-------g------l 148 (383)
+.+|.| |+++||++ ...|.|||-..|+.+ +.|.|. +|+||+|.|.+-+|. +. + +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 345666 68888865 224667776789984 667774 689999998654442 21 1 2
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 016742 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~VTIS 210 (383)
.+ .+++++.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..|- .+|+.-+....-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 397 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ 397 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence 33 489999999999976432 123443433478899999999765444 44444445556667
Q ss_pred Cceec
Q 016742 211 RCHFS 215 (383)
Q Consensus 211 ~n~f~ 215 (383)
+|.|.
T Consensus 398 ~c~i~ 402 (548)
T PLN02301 398 NCKIV 402 (548)
T ss_pred ccEEE
Confidence 77664
No 41
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.81 E-value=0.1 Score=56.29 Aligned_cols=120 Identities=21% Similarity=0.448 Sum_probs=77.3
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eC------C--c------
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TG------K--G------ 147 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~G------~--g------ 147 (383)
+.+|.| |+++||++- ..|+||+-..|+.+ +.+.|. +|+||.|.|.+-+| .+ + +
T Consensus 264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT 341 (572)
T PLN02990 264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT 341 (572)
T ss_pred CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence 445665 688899652 23566666679884 567774 68999999754433 21 1 1
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEE
Q 016742 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV 209 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~D-----------------glidi~~~s~~VTI 209 (383)
+.+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-..| |.+|+.-+....-+
T Consensus 342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 420 (572)
T PLN02990 342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVVL 420 (572)
T ss_pred EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEEE
Confidence 233 489999999999976432 23344443347889999999975544 44444444455666
Q ss_pred eCceec
Q 016742 210 SRCHFS 215 (383)
Q Consensus 210 S~n~f~ 215 (383)
++|.|.
T Consensus 421 ~~C~i~ 426 (572)
T PLN02990 421 QNCNIV 426 (572)
T ss_pred EccEEE
Confidence 777774
No 42
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.021 Score=60.91 Aligned_cols=102 Identities=22% Similarity=0.468 Sum_probs=71.7
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeec-----------CCceEEEeCceec
Q 016742 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-----------ESTDITVSRCHFS 215 (383)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~-----------~s~~VTIS~n~f~ 215 (383)
++.+..++|+.++||+|..-.....|||.++ .++||.|+-|.|+-+.|- |-++- .+.+|+|++|+|.
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred EEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCCcccccccccccEEEecceec
Confidence 3555679999999999986544467999997 899999999999985443 44532 2467999999998
Q ss_pred CCCceeEecCCCCCCCCcceeEEEeceeecCCCCcCCcc
Q 016742 216 SHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV 254 (383)
Q Consensus 216 ~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~ 254 (383)
.-.-+..+|+.- ..+-.+|++-.|.|.+ ..|-=|+
T Consensus 341 ~ghG~~v~Gse~---~ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 341 SGHGGLVLGSEM---GGGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred ccccceEeeeec---CCceeEEEEEeeeecc-Ccceeee
Confidence 433334445432 1112478888888877 4555555
No 43
>smart00656 Amb_all Amb_all domain.
Probab=96.76 E-value=0.032 Score=51.73 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=81.7
Q ss_pred cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEecCC----C-CCCCc-eEecCCCceEEEEceeeecCCCCceEeecC
Q 016742 130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK----G-PDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRE 203 (383)
Q Consensus 130 snkTI~G~G~gi~I~G~gl~i~~a~NVIIRnL~ir~g~----~-~d~Da-I~i~~~s~nVwIDHcs~s~~~Dglidi~~~ 203 (383)
.|++|.+........+.+|.+.+++||+|.+.+|..+. . ...|+ +.+..++.+|=|-.|.|....-++|--..+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 47777765332122345788888999999999999762 1 11344 455545778888888886544443322221
Q ss_pred C------ceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEeceeecCCCCcCCcccc-CeeEEEcceEEcc
Q 016742 204 S------TDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW 269 (383)
Q Consensus 204 s------~~VTIS~n~f~~H~k-~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~ 269 (383)
. -.||+.+|+|.+..- .-++. .-.+=+-+|+|.+.....--++. +.+.+.||||.+.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r---------~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLRQRAPRVR---------FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCcccCCCccc---------CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 2 269999999975321 11111 11567788999887644333332 5789999999863
No 44
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.76 E-value=0.085 Score=56.80 Aligned_cols=120 Identities=16% Similarity=0.408 Sum_probs=77.0
Q ss_pred CCCCCc---hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-------C-----
Q 016742 93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K----- 146 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~-------~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G-------~----- 146 (383)
+.+|.| |+++||++- ..|+||+-..|+.+ +.|.|. +|+||+|.|.+-+|. + .
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 445665 678888652 12556665679984 667773 688999997544432 2 1
Q ss_pred -cEEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceE
Q 016742 147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDI 207 (383)
Q Consensus 147 -gl~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~V 207 (383)
.+.+ .+++++.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..|= .+|+.-+.-.+
T Consensus 333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 1344 489999999999986432 223444433578899999999765444 44444445556
Q ss_pred EEeCceec
Q 016742 208 TVSRCHFS 215 (383)
Q Consensus 208 TIS~n~f~ 215 (383)
-+++|.|.
T Consensus 412 vfq~C~i~ 419 (566)
T PLN02713 412 VFQNCNLY 419 (566)
T ss_pred EEeccEEE
Confidence 67777774
No 45
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.041 Score=55.39 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=68.6
Q ss_pred eceEEEecceeEeccCcceeeeccceEEeCCc----EEEeeeccEEEeeeEEecCCC--CC-CCceEecCCCceEEEEce
Q 016742 116 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFEGGKG--PD-VDAIQIKPKSKHIWIDRC 188 (383)
Q Consensus 116 vsG~I~l~~~l~V~snkTI~G~G~gi~I~G~g----l~i~~a~NVIIRnL~ir~g~~--~d-~DaI~i~~~s~nVwIDHc 188 (383)
.+|.. ...+.|+.-+|+.|. .++++.|.+ +++. +.++|||.|++|+... .+ .-+|-+..+.+.-.|.||
T Consensus 39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N 114 (408)
T COG3420 39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN 114 (408)
T ss_pred Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence 34665 467888888999997 566777654 6775 9999999999996532 12 456666557788889999
Q ss_pred eeecCCCCceEeecCCceEEEeCceec
Q 016742 189 SLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 189 s~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
.+..+.-|. .+ .++.++-|--|.+.
T Consensus 115 ~l~~n~~Gi-~l-~~s~d~~i~~n~i~ 139 (408)
T COG3420 115 DLIGNSFGI-YL-HGSADVRIEGNTIQ 139 (408)
T ss_pred cccccceEE-EE-eccCceEEEeeEEe
Confidence 998888884 44 45777777777765
No 46
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.72 E-value=0.091 Score=55.67 Aligned_cols=120 Identities=19% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------l 148 (383)
+.+|.| |+++||++- ..|+||+-..|+.+ +.|.|. +|+||+|.|.+-+|. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 335655 678888652 23566666679884 667773 689999998654443 21 1 2
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 016742 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~VTIS 210 (383)
.+ .++++|.|||+|+...+. ..-|+-++-.+....+.+|.|.-..|= .+|+.-+...+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 488999999999976432 234555544578899999999765444 44444444556777
Q ss_pred Cceec
Q 016742 211 RCHFS 215 (383)
Q Consensus 211 ~n~f~ 215 (383)
+|.|.
T Consensus 359 ~C~I~ 363 (509)
T PLN02488 359 FCQIV 363 (509)
T ss_pred ccEEE
Confidence 77775
No 47
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.68 E-value=0.07 Score=57.06 Aligned_cols=97 Identities=21% Similarity=0.429 Sum_probs=64.0
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------EEEeeeccEE
Q 016742 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHVI 157 (383)
Q Consensus 99 SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~G~-----g--------l~i~~a~NVI 157 (383)
|+++||++ ...|.|||-..|+.+ +.|.|. +|+||+|.|.+-+| .+. + +.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 57888865 234667776789884 556663 78999999754443 321 1 233 489999
Q ss_pred EeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 016742 158 ICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 158 IRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
.|||+|+...+. ..-++-++-.+.++.+.+|.|.-..|=|+
T Consensus 323 a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy 364 (537)
T PLN02506 323 ARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLY 364 (537)
T ss_pred EEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccce
Confidence 999999976432 12333333347889999999976555443
No 48
>PLN02665 pectinesterase family protein
Probab=96.68 E-value=0.12 Score=52.75 Aligned_cols=109 Identities=15% Similarity=0.224 Sum_probs=71.3
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceE-EeCC------------cEEEeeeccEEE
Q 016742 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK------------GLRLKECEHVII 158 (383)
Q Consensus 99 SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~-I~G~------------gl~i~~a~NVII 158 (383)
|+++||++- ..|+||+-..|+.+ +.|.|. +++||.|.+...+ |... .+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 788999752 23566666679884 667773 6889999965333 3211 1344 4899999
Q ss_pred eeeEEecCCC--------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 159 CNLEFEGGKG--------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 159 RnL~ir~g~~--------~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+||+|+.... ...-|+.+ .+..+.+.+|.|.-..|=|++-. ..--+.+|.|.
T Consensus 159 ~nitf~Nta~~~~~~~~g~QAVAl~v--~gDka~f~~C~f~G~QDTL~~~~---gr~yf~~CyIe 218 (366)
T PLN02665 159 ANIIIKNSAPRPDGKRKGAQAVAMRI--SGDKAAFYNCRFIGFQDTLCDDK---GRHFFKDCYIE 218 (366)
T ss_pred EeeEEEeCCCCcCCCCCCcceEEEEE--cCCcEEEEcceeccccceeEeCC---CCEEEEeeEEe
Confidence 9999997532 11234445 46889999999988877776542 23344555554
No 49
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.67 E-value=0.1 Score=56.55 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=76.2
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------E
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~G~-----g--------l 148 (383)
+.+|.| |+++||++- ..|+||+-..|+.+ +.|.|. +|+||+|.|.+-+| .+. + |
T Consensus 290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 367 (596)
T PLN02745 290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF 367 (596)
T ss_pred CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence 334555 688898652 23566665679884 567774 58999999865443 321 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeecCCceEEEe
Q 016742 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVS 210 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~VTIS 210 (383)
.+ .+++++.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..|=| +|+.-+.-..-++
T Consensus 368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 446 (596)
T PLN02745 368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQ 446 (596)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEE
Confidence 33 489999999999975432 1233433334788999999997655544 4444444455566
Q ss_pred Cceec
Q 016742 211 RCHFS 215 (383)
Q Consensus 211 ~n~f~ 215 (383)
+|.|.
T Consensus 447 ~C~i~ 451 (596)
T PLN02745 447 NCLIF 451 (596)
T ss_pred ecEEE
Confidence 66664
No 50
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.64 E-value=0.095 Score=56.12 Aligned_cols=118 Identities=16% Similarity=0.376 Sum_probs=77.4
Q ss_pred CCCc---hHHHhhhcC---C----CeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------c
Q 016742 95 DGPG---SLREGCRMK---E----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------G 147 (383)
Q Consensus 95 ~g~G---SLr~ai~~~---~----Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------g 147 (383)
+|.| |+++||++- . -|+||+-..|+.+ +.|.|. .|+||+|.|.+-+|. +. .
T Consensus 230 dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT 307 (538)
T PLN03043 230 YGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSST 307 (538)
T ss_pred CCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceE
Confidence 4555 678888642 1 2566666789984 667773 799999998554433 21 1
Q ss_pred EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEE
Q 016742 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV 209 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~D-----------------glidi~~~s~~VTI 209 (383)
+.+ .++++|.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..| |.+|+.-+.-.+-+
T Consensus 308 ~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avf 386 (538)
T PLN03043 308 FAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIF 386 (538)
T ss_pred EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeee
Confidence 334 489999999999976432 23444444357889999999975544 44454445556777
Q ss_pred eCceec
Q 016742 210 SRCHFS 215 (383)
Q Consensus 210 S~n~f~ 215 (383)
++|.|.
T Consensus 387 q~c~i~ 392 (538)
T PLN03043 387 QNCNLY 392 (538)
T ss_pred eccEEE
Confidence 888775
No 51
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.62 E-value=0.11 Score=55.50 Aligned_cols=103 Identities=19% Similarity=0.396 Sum_probs=67.1
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--------CC------cE
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GL 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~--------G~------gl 148 (383)
+.+|.| |+++||++- ..|++|+-..|+.+ +.|.|. +|+||+|.|.+-+|. |. .+
T Consensus 211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~ 288 (520)
T PLN02201 211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF 288 (520)
T ss_pred cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence 335555 688888652 23566666679884 667774 689999997544332 11 13
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 016742 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
.+ .+++++.+||+|+...+. ..-|+-++-.+....+.+|.|.-..|=|+
T Consensus 289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy 338 (520)
T PLN02201 289 AV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLY 338 (520)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeE
Confidence 33 389999999999976432 22344443347889999999976655544
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.60 E-value=0.051 Score=53.98 Aligned_cols=109 Identities=17% Similarity=0.341 Sum_probs=65.9
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceE-EeCC-------------cEEEeeeccEE
Q 016742 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHVI 157 (383)
Q Consensus 99 SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~-I~G~-------------gl~i~~a~NVI 157 (383)
++++||+. ...+++||-..|+.+ +.|.|. +++||+|.|..-+ |.+. .|.+. +++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-cccee
Confidence 57888875 223566666789985 667775 5899999975433 4331 14554 89999
Q ss_pred EeeeEEecCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 158 IRnL~ir~g~~---~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
++||+|+...+ ...-||.+. +.++.+.+|.|.-..|-|+.- ....-+.+|.|.
T Consensus 91 ~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~Ie 146 (298)
T PF01095_consen 91 AENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIE 146 (298)
T ss_dssp EEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEE
T ss_pred eeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEE
Confidence 99999996432 123566664 678999999999888876643 245666788776
No 53
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.15 Score=55.25 Aligned_cols=119 Identities=16% Similarity=0.360 Sum_probs=78.3
Q ss_pred CCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------cEE
Q 016742 94 DDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GLR 149 (383)
Q Consensus 94 d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------gl~ 149 (383)
.+|.| |+++||++- ..|.||+-..|+.+ +.+.|. .|++|+|.|.+-+|. +. .+.
T Consensus 281 ~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~ 358 (587)
T PLN02313 281 ADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA 358 (587)
T ss_pred CCCCCCCccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE
Confidence 34555 678888652 23666666779874 567774 689999998654443 21 123
Q ss_pred EeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEeC
Q 016742 150 LKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSR 211 (383)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dglidi~~~s~~VTIS~ 211 (383)
+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-.. .|.+|+.-+...+-+++
T Consensus 359 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~ 437 (587)
T PLN02313 359 A-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQD 437 (587)
T ss_pred E-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEc
Confidence 3 479999999999976432 2234433334788999999997543 45555555566677888
Q ss_pred ceec
Q 016742 212 CHFS 215 (383)
Q Consensus 212 n~f~ 215 (383)
|.|.
T Consensus 438 c~i~ 441 (587)
T PLN02313 438 CDIN 441 (587)
T ss_pred cEEE
Confidence 8886
No 54
>PLN02304 probable pectinesterase
Probab=96.56 E-value=0.032 Score=57.16 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=77.0
Q ss_pred CCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEE-eC-------------CcEEE
Q 016742 95 DGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKL-TG-------------KGLRL 150 (383)
Q Consensus 95 ~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~gi~I-~G-------------~gl~i 150 (383)
+|.| |+++||++- ..|++|+-..|+.+ +.|.| ++|+||.|+|..-++ .. ..+.+
T Consensus 82 dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v 159 (379)
T PLN02304 82 NGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV 159 (379)
T ss_pred CCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE
Confidence 4554 788999752 23566666789874 66777 379999999754443 21 11334
Q ss_pred eeeccEEEeeeEEecCCCC------CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 151 KECEHVIICNLEFEGGKGP------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~------d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
.+++++.+||+|+..... ..-|+-+.-.+..+.+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 160 -~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe 226 (379)
T PLN02304 160 -FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ 226 (379)
T ss_pred -ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence 389999999999975311 1224433334788999999999999988753 234556777776
No 55
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.52 E-value=0.033 Score=59.60 Aligned_cols=117 Identities=21% Similarity=0.417 Sum_probs=76.8
Q ss_pred CCCCCc---hHHHhhhcC------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c-------
Q 016742 93 ADDGPG---SLREGCRMK------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G------- 147 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~------~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g------- 147 (383)
+.+|.| |+++||++- ..|+||+-..|+.+ +.|.|. +|+|++|.|.+-+|. +. +
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 445666 788999752 23566665679984 567773 699999998654443 21 1
Q ss_pred -EEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 148 -l~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+.+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-..|-|++-. ..--..+|.|.
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~---~Rqyy~~C~I~ 371 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS---QRQFYRECYIY 371 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC---CceEEEeeEEe
Confidence 334 489999999999976432 23444444357889999999998877766432 23344555554
No 56
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.51 E-value=0.13 Score=55.47 Aligned_cols=118 Identities=18% Similarity=0.384 Sum_probs=75.6
Q ss_pred CCCc---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-e-------CC------cEEE
Q 016742 95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-T-------GK------GLRL 150 (383)
Q Consensus 95 ~g~G---SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~-------G~------gl~i 150 (383)
+|.| |.++||++ ...|.||+-..|+.+ +.+.|. .|+||+|.|.+-+| . |. .+.+
T Consensus 265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v 342 (565)
T PLN02468 265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV 342 (565)
T ss_pred CCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence 4555 67788865 233566666789884 567774 58899999764444 2 11 1333
Q ss_pred eeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEEeCc
Q 016742 151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVSRC 212 (383)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~D-----------------glidi~~~s~~VTIS~n 212 (383)
.+++++.|||+|+...+. ..-|+-++-.+..+.+.+|.|.-..| |.+|+.-+.-.+-+++|
T Consensus 343 -~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~c 421 (565)
T PLN02468 343 -FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQNC 421 (565)
T ss_pred -ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEecc
Confidence 379999999999976432 12344443357889999999975544 44444445555666777
Q ss_pred eec
Q 016742 213 HFS 215 (383)
Q Consensus 213 ~f~ 215 (383)
.|.
T Consensus 422 ~i~ 424 (565)
T PLN02468 422 NIL 424 (565)
T ss_pred EEE
Confidence 664
No 57
>PLN02497 probable pectinesterase
Probab=96.42 E-value=0.26 Score=49.73 Aligned_cols=111 Identities=13% Similarity=0.235 Sum_probs=71.9
Q ss_pred hHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeeeccceE-EeC---------CcEEEeeeccEEEeee
Q 016742 99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVK-LTG---------KGLRLKECEHVIICNL 161 (383)
Q Consensus 99 SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~gi~-I~G---------~gl~i~~a~NVIIRnL 161 (383)
|+++||++ ...+++|+-..|+. .+.|.| ++++||.|+|..-+ |.. ..+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 68888865 22355555567988 466777 37899999975333 321 12444 4899999999
Q ss_pred EEecCCCC--------CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 162 EFEGGKGP--------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 162 ~ir~g~~~--------d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+|+...+. ..-|+-+.-.+.++-+.+|.|.-..|=|++- ...--..+|.|.
T Consensus 123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 181 (331)
T PLN02497 123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ 181 (331)
T ss_pred EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence 99975321 1124444334788999999999888877643 234445566554
No 58
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.36 E-value=0.24 Score=53.58 Aligned_cols=121 Identities=20% Similarity=0.390 Sum_probs=77.1
Q ss_pred CCCCCc---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 016742 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------l 148 (383)
+.+|.| |+++||++- ..|+||+-..|+.+-+ .|.|. +|+||+|.|.+-+|. +. + +
T Consensus 277 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~ 355 (587)
T PLN02484 277 SKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASF 355 (587)
T ss_pred CCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEE
Confidence 445555 578898652 2366676678998531 47774 689999998654443 21 1 2
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 016742 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~VTIS 210 (383)
.+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-..|= .+|+.-+.-..-++
T Consensus 356 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 434 (587)
T PLN02484 356 AA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQ 434 (587)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEe
Confidence 33 489999999999976432 123444433478899999999765444 44444444556667
Q ss_pred Cceec
Q 016742 211 RCHFS 215 (383)
Q Consensus 211 ~n~f~ 215 (383)
+|.|.
T Consensus 435 ~C~i~ 439 (587)
T PLN02484 435 NCSIY 439 (587)
T ss_pred ccEEE
Confidence 77764
No 59
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.086 Score=53.13 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=69.5
Q ss_pred eeEeccCcceeeeccceEEeCC--cEEEeeeccEEEeeeEEecCCC----CCCCceEecCCCceEEEEceeeecCCCCce
Q 016742 125 HLSVSSYKTIDGRGQRVKLTGK--GLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 125 ~l~V~snkTI~G~G~gi~I~G~--gl~i~~a~NVIIRnL~ir~g~~----~d~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
.|.|....|-++. ....|.|. ||.+.++.++.|+.-+|.+-.. ..++||.+. ++..+-|--+.++...|++.
T Consensus 99 gI~v~~~at~A~V-r~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVV-RHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceE-EcccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 4666666666665 22235544 5778889999999999987542 348999998 89999999999999999954
Q ss_pred EeecCCceEEEeCceecCCCce
Q 016742 199 DITRESTDITVSRCHFSSHDKT 220 (383)
Q Consensus 199 di~~~s~~VTIS~n~f~~H~k~ 220 (383)
+ .-|..-+++.|.|++-.++
T Consensus 177 -~-~~S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 177 -S-DTSQHNVFKGNRFRDLRYG 196 (408)
T ss_pred -E-cccccceecccchhheeee
Confidence 3 3477888999999865554
No 60
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.34 E-value=0.027 Score=60.42 Aligned_cols=103 Identities=18% Similarity=0.337 Sum_probs=68.9
Q ss_pred CCCCCc---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C------Cc-------
Q 016742 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------KG------- 147 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~-----~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G------~g------- 147 (383)
+.+|.| |+++||++- ..|.||+-..|+.+ +.|.|. .|+||+|.|.+-+|. + .|
T Consensus 246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa 323 (553)
T PLN02708 246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA 323 (553)
T ss_pred CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence 445555 678888652 23667776789885 566663 689999998654443 1 12
Q ss_pred -EEEeeeccEEEeeeEEecCCCCC-CCceEecCCCceEEEEceeeecCCCCce
Q 016742 148 -LRLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 148 -l~i~~a~NVIIRnL~ir~g~~~d-~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
+.+ .+++++.|||+|+...+.+ .-|+-++-.+..+.+.+|.|.-..|=|+
T Consensus 324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 375 (553)
T PLN02708 324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLY 375 (553)
T ss_pred EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccce
Confidence 334 4899999999999865422 3455444457899999999976555543
No 61
>PLN02314 pectinesterase
Probab=96.31 E-value=0.033 Score=60.17 Aligned_cols=104 Identities=20% Similarity=0.377 Sum_probs=69.3
Q ss_pred CCCCCc---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------E
Q 016742 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------L 148 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I-~G~-----g--------l 148 (383)
+.+|.| |+++||++ ...|+||+-..|+.+ +.+.|. .|+||.|.|.+-+| .+. | |
T Consensus 283 a~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~ 360 (586)
T PLN02314 283 AKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATF 360 (586)
T ss_pred CCCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEE
Confidence 334555 68888865 234667776789984 567673 68999999754443 321 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCCC-CCceEecCCCceEEEEceeeecCCCCceE
Q 016742 149 RLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~d-~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (383)
.+ .+++++.|||+|+...+.. .-|+-++-.+....+.+|.|.-..|=|++
T Consensus 361 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 361 AA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 33 4899999999999764322 23444443578899999999877666543
No 62
>PLN02916 pectinesterase family protein
Probab=96.31 E-value=0.23 Score=52.76 Aligned_cols=103 Identities=19% Similarity=0.375 Sum_probs=66.6
Q ss_pred CCCCCc---hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-------C-----
Q 016742 93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K----- 146 (383)
Q Consensus 93 ~d~g~G---SLr~ai~~~-------~Pr~IVf~vsG~I~l~~~l~V~---snkTI~G~G~gi~I~-G-------~----- 146 (383)
+.+|.| |+++||++- ..|+||+-..|+.+ +.+.|. +|+||+|.|.+-+|. + .
T Consensus 192 a~dGsG~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 269 (502)
T PLN02916 192 ARDGSGTHRTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSS 269 (502)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceee
Confidence 334544 678888542 23666666779884 667774 689999997544433 1 1
Q ss_pred -cEEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 016742 147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (383)
Q Consensus 147 -gl~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dgli 198 (383)
.+.+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-..|=|+
T Consensus 270 AT~~v-~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy 322 (502)
T PLN02916 270 ATFGV-SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLF 322 (502)
T ss_pred EEEEE-ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeE
Confidence 1333 389999999999976432 12333333247889999999976655544
No 63
>PLN02634 probable pectinesterase
Probab=96.02 E-value=0.11 Score=52.94 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=71.6
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEEe
Q 016742 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRLK 151 (383)
Q Consensus 99 SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~gi~I~------------G~--------gl~i~ 151 (383)
|+++||++- ..+++|+-..|+.+ +.|.| ++++||.|.|...+|. |. .+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 477888652 23455555679874 56777 3789999997655543 10 1334
Q ss_pred eeccEEEeeeEEecCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 152 ~a~NVIIRnL~ir~g~~------~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
.+++++.+||+|+.... ...-|+-+.-.+.++-+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIe 213 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIE 213 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEc
Confidence 38899999999997532 11233333324678999999999888887643 234555666665
No 64
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.95 E-value=0.027 Score=51.42 Aligned_cols=102 Identities=24% Similarity=0.399 Sum_probs=55.9
Q ss_pred CcceeeeccceEEe--CCcEEEeeeccEEEeeeEEecCCCCCCCceEe-------------------cCCCceEEEEcee
Q 016742 131 YKTIDGRGQRVKLT--GKGLRLKECEHVIICNLEFEGGKGPDVDAIQI-------------------KPKSKHIWIDRCS 189 (383)
Q Consensus 131 nkTI~G~G~gi~I~--G~gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i-------------------~~~s~nVwIDHcs 189 (383)
+++|.|.+.. .. ..++.+..+.|+.|+|++++... .++|.+ +.+..+++++.|.
T Consensus 98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 5777775322 22 34677777899999999999752 233322 2111223334444
Q ss_pred eecCCCCceEeecCCceEEEeCceecC-CCceeEecCCCCCCCCcceeEEEeceeecCCC
Q 016742 190 LRDYDDGLIDITRESTDITVSRCHFSS-HDKTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (383)
Q Consensus 190 ~s~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~ 248 (383)
+..+.+| + ..+.+++++++|.|.. ...++.+-... .+++.+|.|.+|.
T Consensus 173 ~~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp EESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred ccCCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 5555666 2 2223677788887765 44444433221 3666666666654
No 65
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.67 E-value=0.16 Score=47.45 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=76.3
Q ss_pred cCcceeee---------ccceEEeCCcEEEeeeccEEEeeeEEecCCC----CCCCc-eEecCCCceEEEEceeeecCCC
Q 016742 130 SYKTIDGR---------GQRVKLTGKGLRLKECEHVIICNLEFEGGKG----PDVDA-IQIKPKSKHIWIDRCSLRDYDD 195 (383)
Q Consensus 130 snkTI~G~---------G~gi~I~G~gl~i~~a~NVIIRnL~ir~g~~----~d~Da-I~i~~~s~nVwIDHcs~s~~~D 195 (383)
.|++|-+. +....-.+..|.|.+++||+|.+.+|..+.. ...|+ |.+...+++|=|-+|-|.....
T Consensus 51 rNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k 130 (200)
T PF00544_consen 51 RNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNK 130 (200)
T ss_dssp ES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEE
T ss_pred ECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhcccccc
Confidence 36777773 2333334567999999999999999998721 11344 5665568899999998875422
Q ss_pred CceE------eecCCceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEeceeecCCCCcCCcccc-CeeEEEcceE
Q 016742 196 GLID------ITRESTDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYT 266 (383)
Q Consensus 196 glid------i~~~s~~VTIS~n~f~~H~k-~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~ 266 (383)
.++. .......||+-+|+|.+... .-++.. -.+-+-+|+|.+.....=.++. +++-+.||||
T Consensus 131 ~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 131 TMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred ccccCCCCCccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 2221 11123689999999974321 112211 1578889999877776655554 4689999987
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=95.51 E-value=0.35 Score=50.34 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=70.6
Q ss_pred CeEEecCCCCCCC---chHHHhhhcC-----CCeEEEEEeceEEEecceeEe---ccCcceeeecc---ceEEeCC----
Q 016742 85 PLYHVTTLADDGP---GSLREGCRMK-----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTGK---- 146 (383)
Q Consensus 85 ~v~~VTnl~d~g~---GSLr~ai~~~-----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~---gi~I~G~---- 146 (383)
..++|-. +.+|. -|+++||++. ..|++|+-..|+.+ +.|.| .+++||.|.|. +..|...
T Consensus 80 ~~~vV~~-a~dGsGdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~ 156 (422)
T PRK10531 80 PDFVVGP-AGTQGVTHTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGE 156 (422)
T ss_pred CcEEEec-CCCCCCCccCHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCccc
Confidence 4555542 22333 3688899742 23556665679884 66777 37899999763 3344321
Q ss_pred -------------------------------------c------EEEeeeccEEEeeeEEecCCCC-----CCCceEecC
Q 016742 147 -------------------------------------G------LRLKECEHVIICNLEFEGGKGP-----DVDAIQIKP 178 (383)
Q Consensus 147 -------------------------------------g------l~i~~a~NVIIRnL~ir~g~~~-----d~DaI~i~~ 178 (383)
+ +.+ .+++++.+||+|+...+. ..-|+-++-
T Consensus 157 ~~~~~~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv 235 (422)
T PRK10531 157 MSPADWRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT 235 (422)
T ss_pred cccccccccccccccccccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE
Confidence 0 223 479999999999976421 122333332
Q ss_pred CCceEEEEceeeecCCCCceE
Q 016742 179 KSKHIWIDRCSLRDYDDGLID 199 (383)
Q Consensus 179 ~s~nVwIDHcs~s~~~Dglid 199 (383)
.+..+.+.+|.|.-..|=|+.
T Consensus 236 ~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 236 DGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred cCCcEEEEeeEEecccceeee
Confidence 468899999999988888775
No 67
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.41 Score=47.74 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=86.3
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCC-----CCceEeecCCceEEEeCceecCCCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYD-----DGLIDITRESTDITVSRCHFSSHDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~-----Dglidi~~~s~~VTIS~n~f~~H~k~~L 222 (383)
+.|+.++|+-|-.+--.. .--+-++.|+ .+.||+|...+|.... +..|.+..++.+|=|-+|.|..|....-
T Consensus 95 ~~iki~sNkTivG~g~~a--~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~ 171 (345)
T COG3866 95 ITIKIGSNKTIVGSGADA--TLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS 171 (345)
T ss_pred EEEeeccccEEEeecccc--EEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence 666656665554332100 0114678887 5899999999998655 3348887788999999999987655321
Q ss_pred ecCCCCC--CCCcceeEEEeceeecCCCC---------cCCccccCeeEEEcceEEccccceeeecCCceEEEEceEEec
Q 016742 223 IGADPSH--VADRCIRVTIHHCFFDGTRQ---------RHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 291 (383)
Q Consensus 223 iG~~d~~--~~d~~~~VT~hhN~f~~~~~---------R~Pr~r~G~~hv~NN~~~n~~~~a~~~~~~a~i~~e~Nyf~~ 291 (383)
--+.|.. .....-.|||-.|.|+++.- -++--..-++.+-+|||.|.-..+=..|- .++.+-+|||+.
T Consensus 172 ~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf-G~vHvyNNYy~~ 250 (345)
T COG3866 172 GSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF-GMVHVYNNYYEG 250 (345)
T ss_pred ccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEe-eEEEEecccccc
Confidence 1111111 11112479999999976532 22221112478889999987554332332 356677999994
Q ss_pred CC
Q 016742 292 GQ 293 (383)
Q Consensus 292 g~ 293 (383)
-+
T Consensus 251 ~~ 252 (345)
T COG3866 251 NP 252 (345)
T ss_pred Cc
Confidence 44
No 68
>PLN02671 pectinesterase
Probab=95.13 E-value=0.32 Score=49.62 Aligned_cols=109 Identities=13% Similarity=0.209 Sum_probs=72.1
Q ss_pred hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeecc---ceEEeC-----------C--------cEE
Q 016742 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTG-----------K--------GLR 149 (383)
Q Consensus 99 SLr~ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~snkTI~G~G~---gi~I~G-----------~--------gl~ 149 (383)
|+++||++- ..+++|+-..|+.+ +.|.| .+++||+|.|. ...|.. . .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 688888652 22455555678874 66777 37899999863 334441 0 133
Q ss_pred EeeeccEEEeeeEEecCCC-------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 150 LKECEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~-------~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+ .+++++.+||+|+.... ...-|+.+ .+.++.+.+|.|.-..|=|++- ...--+.+|.|.
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe 217 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ 217 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence 3 47999999999997521 11344555 4688999999999988888754 234455677765
No 69
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=93.16 E-value=0.38 Score=51.54 Aligned_cols=135 Identities=20% Similarity=0.317 Sum_probs=85.6
Q ss_pred CCCeEEEEEeceEEEecc------e---e-Eec-cCcceeeeccceEEeC----CcEEEeeeccEEEeeeEEecCCCCCC
Q 016742 107 KEPLWIVFEVSGTIHLRS------H---L-SVS-SYKTIDGRGQRVKLTG----KGLRLKECEHVIICNLEFEGGKGPDV 171 (383)
Q Consensus 107 ~~Pr~IVf~vsG~I~l~~------~---l-~V~-snkTI~G~G~gi~I~G----~gl~i~~a~NVIIRnL~ir~g~~~d~ 171 (383)
..|+.|.|.--..+.+.. + + .+. +|+||.+. .|...+ .||.+..|+||.|.+.+|..+ .
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D 309 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D 309 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence 467777765444444321 1 1 122 56777664 111222 378998999999999999975 3
Q ss_pred CceEec-----------CCCceEEEEceeeecCCCCceEee---cCCceEEEeCceecCCCceeEecCCCCCCCCcceeE
Q 016742 172 DAIQIK-----------PKSKHIWIDRCSLRDYDDGLIDIT---RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRV 237 (383)
Q Consensus 172 DaI~i~-----------~~s~nVwIDHcs~s~~~Dglidi~---~~s~~VTIS~n~f~~H~k~~LiG~~d~~~~d~~~~V 237 (383)
|+|.+. .-+++|||-||-|+.+.-+++.-. .+-.+|++.+|.|.+-+.+.-|....... .+..+|
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence 555443 125789999999998776655422 23579999999999876666555443211 112377
Q ss_pred EEeceeecCCC
Q 016742 238 TIHHCFFDGTR 248 (383)
Q Consensus 238 T~hhN~f~~~~ 248 (383)
+|+.+...+..
T Consensus 389 ~~~~~~~~nv~ 399 (542)
T COG5434 389 VFEDNKMRNVK 399 (542)
T ss_pred EEecccccCcc
Confidence 77777666554
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=89.10 E-value=0.92 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=17.2
Q ss_pred eEEEeceeecCCCCc--CCcccc-Cee-EEEcceEEccc
Q 016742 236 RVTIHHCFFDGTRQR--HPRVRY-AKV-HLYNNYTRNWG 270 (383)
Q Consensus 236 ~VT~hhN~f~~~~~R--~Pr~r~-G~~-hv~NN~~~n~~ 270 (383)
+-++..|+|-.+..+ ..-+|. +.- .|+|||+++..
T Consensus 246 ~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~ 284 (425)
T PF14592_consen 246 RNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLT 284 (425)
T ss_dssp S-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESS
T ss_pred CceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccc
Confidence 346677777665543 355553 443 47788887653
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.53 E-value=3.8 Score=38.26 Aligned_cols=88 Identities=22% Similarity=0.181 Sum_probs=54.6
Q ss_pred ceEEEeCceecCCC-ce-eEecCCCCCCCCcceeEEEeceeecCCCCcCCccc--cC-------eeEEEcceEEccccce
Q 016742 205 TDITVSRCHFSSHD-KT-MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR--YA-------KVHLYNNYTRNWGIYA 273 (383)
Q Consensus 205 ~~VTIS~n~f~~H~-k~-~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r--~G-------~~hv~NN~~~n~~~~a 273 (383)
++|.|=+|.|.+-. .+ -|+|.......+...+|-+|||.|-.+.. +|.+. .| ..-+.||+|......|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccccce
Confidence 57888888887643 33 36787655555555699999999977643 45443 22 2478999998654433
Q ss_pred ee----------ecCCceEEEEceEEecCC
Q 016742 274 VC----------ASVDSQIYSQCNIYEAGQ 293 (383)
Q Consensus 274 ~~----------~~~~a~i~~e~Nyf~~g~ 293 (383)
+. .+.+=...+.+|.+.+..
T Consensus 81 i~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred EEEEecccccCCCCCceEEEEEcceEeeee
Confidence 31 112223455677776643
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=81.62 E-value=19 Score=36.61 Aligned_cols=146 Identities=11% Similarity=0.145 Sum_probs=87.8
Q ss_pred chHHHhhhc-----CCCeEEEEEeceEEEecceeEec-cC--cceeeeccc--eEEe-----C---C--cEEE-------
Q 016742 98 GSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS-SY--KTIDGRGQR--VKLT-----G---K--GLRL------- 150 (383)
Q Consensus 98 GSLr~ai~~-----~~Pr~IVf~vsG~I~l~~~l~V~-sn--kTI~G~G~g--i~I~-----G---~--gl~i------- 150 (383)
-|.++||++ ...|.+|+-..|+. ++.|.|. ++ +|+.|.+.. -+.. + . +...
T Consensus 95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~ 172 (405)
T COG4677 95 TTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR 172 (405)
T ss_pred HHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence 467777765 22466666677887 4667775 55 899998643 1211 1 1 1111
Q ss_pred -------------eeeccEEEeeeEEecCCC--CCC---CceEecCCCceEEEEceeeecCCCCceEeecCCc-------
Q 016742 151 -------------KECEHVIICNLEFEGGKG--PDV---DAIQIKPKSKHIWIDRCSLRDYDDGLIDITREST------- 205 (383)
Q Consensus 151 -------------~~a~NVIIRnL~ir~g~~--~d~---DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~------- 205 (383)
...++.+++||+|+...+ ... -++-+...+..++|..|.+--..|-++.-..+..
T Consensus 173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~ 252 (405)
T COG4677 173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR 252 (405)
T ss_pred hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence 125789999999996432 112 2444444578899999999988888765433111
Q ss_pred --eEEEeCceecCCCceeEecCCCCCCCCcceeEEEeceeecCCCCcCCccc
Q 016742 206 --DITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR 255 (383)
Q Consensus 206 --~VTIS~n~f~~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r 255 (383)
.--+-+|.|+.| --+++|+. .+-||+|-|.-+..|.+-..
T Consensus 253 ~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 253 QPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred chhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 123446666533 23555653 35678887877788875543
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=81.49 E-value=19 Score=35.53 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=51.7
Q ss_pred EEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec--CCCCc---------eEee---cCCceEEEeCcee
Q 016742 149 RLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD--YDDGL---------IDIT---RESTDITVSRCHF 214 (383)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~--~~Dgl---------idi~---~~s~~VTIS~n~f 214 (383)
.+..+++|-|+|+.+.+ |-+.| .+.||-|||..+.. +.|+. |+.+ ..+.||||.++.+
T Consensus 113 t~W~c~~i~l~nv~~~g------dYf~m--~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i 184 (277)
T PF12541_consen 113 TLWNCRGIKLKNVQANG------DYFFM--NSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVI 184 (277)
T ss_pred cCEEeCCeEEEeEEEec------eEeee--eccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceE
Confidence 33456666666666632 33333 25566666665532 11211 1110 2356677777666
Q ss_pred cCCCceeEecCCCCCCCCcceeEEEeceeecCCCCcCCccccCeeEEEcceEEcc
Q 016742 215 SSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNW 269 (383)
Q Consensus 215 ~~H~k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~ 269 (383)
..-+ +|+. ..++||-+|.+... .|.+-.-.+.+.|.-+.+.
T Consensus 185 ~GEY----LgW~-------SkNltliNC~I~g~---QpLCY~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 185 NGEY----LGWN-------SKNLTLINCTIEGT---QPLCYCDNLVLENCTMIDT 225 (277)
T ss_pred eeeE----EEEE-------cCCeEEEEeEEecc---CccEeecceEEeCcEeecc
Confidence 5322 2322 13788888877654 4566544567777766644
No 74
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=81.11 E-value=4.7 Score=39.63 Aligned_cols=64 Identities=17% Similarity=0.354 Sum_probs=47.5
Q ss_pred eeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 016742 152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (383)
Q Consensus 152 ~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~~d 227 (383)
+++|..|.|.+|..|.. + +. .++||-+++|.|.|-+= +++ ++++.|.+|.|..-..+.+|.+.+
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~~ 80 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSNN 80 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeCC
Confidence 47899999999997643 3 33 58899999999987432 222 467888888888887888887653
No 75
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=69.58 E-value=18 Score=38.65 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=36.5
Q ss_pred CcEEEeeeccEEEeeeEEecCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 016742 146 KGLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (383)
Q Consensus 146 ~gl~i~~a~NVIIRnL~ir~g~~~-d~DaI~i~~~s~nVwIDHcs~s~~~Dglid 199 (383)
..+.+. +++++.|||+|+...+. ..-|+-++-.+.++-+.+|.|.-..|=|++
T Consensus 263 aT~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 263 ATFTIT-GDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred eeEEEE-CCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchhee
Confidence 345664 89999999999976432 123343333478899999999877776654
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=69.38 E-value=8 Score=26.77 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=20.6
Q ss_pred ceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 173 AIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 173 aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
||.+. .+.+..|..|.++...|| |.+. .+.+-+|..|.|.
T Consensus 1 GI~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred CEEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 34454 344555666666666664 3442 2455555555554
No 77
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=62.05 E-value=47 Score=31.21 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred CCceEEEEceeeecC-CCCceEee-----cCCceEEEeCceecCCCceeEec--CCCCCCCC-cceeEEEeceeecCCCC
Q 016742 179 KSKHIWIDRCSLRDY-DDGLIDIT-----RESTDITVSRCHFSSHDKTMLIG--ADPSHVAD-RCIRVTIHHCFFDGTRQ 249 (383)
Q Consensus 179 ~s~nVwIDHcs~s~~-~Dglidi~-----~~s~~VTIS~n~f~~H~k~~LiG--~~d~~~~d-~~~~VT~hhN~f~~~~~ 249 (383)
.+++|+|.|+.|... ....++.. .+-.+..|-+|.|+.-..+.+.- ........ .+...++.+|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 357999999999763 22222221 23346789999998755543322 11112222 23456678889999997
Q ss_pred cC
Q 016742 250 RH 251 (383)
Q Consensus 250 R~ 251 (383)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 74
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=49.86 E-value=2.4e+02 Score=27.03 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=38.9
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC-CCceeE
Q 016742 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTML 222 (383)
Q Consensus 148 l~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~L 222 (383)
|.|+ +-..|+|+.|-. ...|||... + ...|+.+-+.+..+..+.++..+..++|..+-+.+ .+|.+-
T Consensus 57 F~le--~GatlkNvIiG~---~~~dGIHC~-G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 57 FILE--DGATLKNVIIGA---NQADGIHCK-G--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp EEEE--TTEEEEEEEETS---S-TT-EEEE-S--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEE
T ss_pred EEec--CCCEEEEEEEcC---CCcCceEEc-C--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEE
Confidence 5664 334666666632 235888886 3 56677777777666667886555577777776553 344443
No 79
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=46.51 E-value=1e+02 Score=33.53 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=43.6
Q ss_pred eEEeCC---cEEEeeec----cEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCce
Q 016742 141 VKLTGK---GLRLKECE----HVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH 213 (383)
Q Consensus 141 i~I~G~---gl~i~~a~----NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~ 213 (383)
++|... .+.|.+-+ +..|+|+.+-+.+....|||.+. ..+. |++|=| +..|..|-+.+ ++++|++|.
T Consensus 336 iTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly-~nS~--i~dcF~-h~nDD~iKlYh--S~v~v~~~V 409 (582)
T PF03718_consen 336 ITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY-PNST--IRDCFI-HVNDDAIKLYH--SNVSVSNTV 409 (582)
T ss_dssp -EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B---TT-E--EEEEEE-EESS-SEE--S--TTEEEEEEE
T ss_pred eEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCcccc-CCCe--eeeeEE-EecCchhheee--cCcceeeeE
Confidence 455433 45666444 37899999998877778999997 3333 455544 44444466654 789999998
Q ss_pred ecC-CC-ceeEecCCCCCCCC-cceeEEEece
Q 016742 214 FSS-HD-KTMLIGADPSHVAD-RCIRVTIHHC 242 (383)
Q Consensus 214 f~~-H~-k~~LiG~~d~~~~d-~~~~VT~hhN 242 (383)
+-. |. -.+-||+....+.+ .--++.+-|+
T Consensus 410 iWk~~Ngpiiq~GW~pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 410 IWKNENGPIIQWGWTPRNISNVSVENIDIIHN 441 (582)
T ss_dssp EEE-SSS-SEE--CS---EEEEEEEEEEEEE-
T ss_pred EEecCCCCeEEeeccccccCceEEeeeEEEee
Confidence 863 22 23456765322211 0125666666
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=44.88 E-value=48 Score=22.73 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=29.7
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeec
Q 016742 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD 192 (383)
Q Consensus 147 gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~ 192 (383)
||.+..+++..|++=+|... .|||.+. .+++..|..|.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46777777777887777753 4699987 56677777777764
No 81
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=43.68 E-value=1.3e+02 Score=29.32 Aligned_cols=85 Identities=18% Similarity=0.277 Sum_probs=52.9
Q ss_pred ccCcceeeeccceEE------eCCcEEEeeeccEEEeeeEEecCCCCCCCceEec-----CCCceEEEEceeeecCCCCc
Q 016742 129 SSYKTIDGRGQRVKL------TGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIK-----PKSKHIWIDRCSLRDYDDGL 197 (383)
Q Consensus 129 ~snkTI~G~G~gi~I------~G~gl~i~~a~NVIIRnL~ir~g~~~d~DaI~i~-----~~s~nVwIDHcs~s~~~Dgl 197 (383)
.++.+|.|. +| .|.++.|. ..+..|+|-+|.... .+||.+. ....++.|.-+.+.....|
T Consensus 96 ~~~~~i~Gv----tItN~n~~~g~Gi~Ie-ss~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G- 166 (246)
T PF07602_consen 96 ANNATISGV----TITNPNIARGTGIWIE-SSSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG- 166 (246)
T ss_pred cCCCEEEEE----EEEcCCCCcceEEEEe-cCCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-
Confidence 455566664 33 34478887 449999999999853 3566543 1334566777777776666
Q ss_pred eEeecC--CceEEEeCceecCCCceeE
Q 016742 198 IDITRE--STDITVSRCHFSSHDKTML 222 (383)
Q Consensus 198 idi~~~--s~~VTIS~n~f~~H~k~~L 222 (383)
|++... .....|.+|+|.+...++.
T Consensus 167 i~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 167 ISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred eEEEcccCCccceeeccEEEeCCcCeE
Confidence 444321 2224778998887555543
No 82
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=35.04 E-value=1.5e+02 Score=25.97 Aligned_cols=58 Identities=26% Similarity=0.247 Sum_probs=40.0
Q ss_pred ccEEEeeeEEecCCC------------CCCCceEecCCCceEEEEceeeec---CCCCceEeecCCceE-EEeCc
Q 016742 154 EHVIICNLEFEGGKG------------PDVDAIQIKPKSKHIWIDRCSLRD---YDDGLIDITRESTDI-TVSRC 212 (383)
Q Consensus 154 ~NVIIRnL~ir~g~~------------~d~DaI~i~~~s~nVwIDHcs~s~---~~Dglidi~~~s~~V-TIS~n 212 (383)
.++-|||..++.|+- .+.|++.|. .....+|--|.=++ +..|.||+..+...| ||.|.
T Consensus 15 ~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~-~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyWd 88 (131)
T PF06355_consen 15 GDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIP-PGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYWD 88 (131)
T ss_pred ccEEEEccEeccCccccCCCcCCEeCccccCceEec-CCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEEe
Confidence 478888888887641 235677776 35667888887755 578899998665555 66554
No 83
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=34.84 E-value=2.8e+02 Score=26.51 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=42.7
Q ss_pred cEEEeeeEEecCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 016742 155 HVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (383)
Q Consensus 155 NVIIRnL~ir~g~~~d~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~VTIS~n~f~ 215 (383)
+.-|+|+-++.. ..||+++...+..+.|.-+.+....|..|-.. +...++|++-...
T Consensus 83 ~Ctl~NVwwedV---cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~ 139 (215)
T PF03211_consen 83 SCTLENVWWEDV---CEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAE 139 (215)
T ss_dssp CEEEEEEEESS----SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEE
T ss_pred CEEEEEEEeccc---ceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEc
Confidence 667777777754 36999998433389999999999999998884 4567999884333
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.86 E-value=47 Score=37.55 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=9.5
Q ss_pred eEEEeceeecCCCCcCCcc
Q 016742 236 RVTIHHCFFDGTRQRHPRV 254 (383)
Q Consensus 236 ~VT~hhN~f~~~~~R~Pr~ 254 (383)
+.|+.|=+-.-|...-|++
T Consensus 860 k~TLLHfLae~~e~kypd~ 878 (1102)
T KOG1924|consen 860 KTTLLHFLAEICEEKYPDI 878 (1102)
T ss_pred hhHHHHHHHHHHHHhChhh
Confidence 4555555544444444543
No 85
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=30.52 E-value=1.6e+02 Score=30.64 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=33.9
Q ss_pred ceEEEeCceecCCC--ceeEecCCCCCCCCcceeEEEeceeecCCCCcCCccccCeeEEEcceEEccccceeeecCCceE
Q 016742 205 TDITVSRCHFSSHD--KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQI 282 (383)
Q Consensus 205 ~~VTIS~n~f~~H~--k~~LiG~~d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~a~~~~~~a~i 282 (383)
..||+.++.|..-+ .+.++=.. .+++||.+.|-+...=.=..+ +...|....|+.-- -++......++
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~~--------t~~~~hgC~F~gf~g~cl~~~-~~~~VrGC~F~~C~-~gi~~~~~~~l 190 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHAN--------TNTLFHGCSFFGFHGTCLESW-AGGEVRGCTFYGCW-KGIVSRGKSKL 190 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEec--------ceEEEEeeEEecCcceeEEEc-CCcEEeeeEEEEEE-EEeecCCcceE
Confidence 46677777776322 22222111 156667776666544333333 34444545444311 13333333344
Q ss_pred EEEceEEe
Q 016742 283 YSQCNIYE 290 (383)
Q Consensus 283 ~~e~Nyf~ 290 (383)
.+-.+.|+
T Consensus 191 sVk~C~Fe 198 (386)
T PF01696_consen 191 SVKKCVFE 198 (386)
T ss_pred Eeeheeee
Confidence 44444444
No 86
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=26.00 E-value=94 Score=17.68 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.5
Q ss_pred eEEEEceeeecCCC
Q 016742 182 HIWIDRCSLRDYDD 195 (383)
Q Consensus 182 nVwIDHcs~s~~~D 195 (383)
+++|.+|.|.....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 34455555544443
No 87
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=21.98 E-value=66 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=13.3
Q ss_pred CceEecCCCceEEEEcee
Q 016742 172 DAIQIKPKSKHIWIDRCS 189 (383)
Q Consensus 172 DaI~i~~~s~nVwIDHcs 189 (383)
+-|.+...+.-|||+||+
T Consensus 14 ~~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVD 31 (59)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 445554467899999997
No 88
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.64 E-value=59 Score=34.25 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=13.5
Q ss_pred CCceEeecCCceEEEeCce
Q 016742 195 DGLIDITRESTDITVSRCH 213 (383)
Q Consensus 195 Dglidi~~~s~~VTIS~n~ 213 (383)
|-+|-|+...+.|||++|.
T Consensus 363 ~s~iqIkGKvNsItld~Ck 381 (480)
T KOG2675|consen 363 NSTIQIKGKVNSITLDNCK 381 (480)
T ss_pred ceEEEEeceeeeEEecCCc
Confidence 4456777777788888884
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.38 E-value=1.1e+03 Score=25.78 Aligned_cols=47 Identities=9% Similarity=0.199 Sum_probs=24.1
Q ss_pred eCCcEEEeeecc-EEEeeeEEecCCCCCCCceEecCCCceEE---EEceeeecC
Q 016742 144 TGKGLRLKECEH-VIICNLEFEGGKGPDVDAIQIKPKSKHIW---IDRCSLRDY 193 (383)
Q Consensus 144 ~G~gl~i~~a~N-VIIRnL~ir~g~~~d~DaI~i~~~s~nVw---IDHcs~s~~ 193 (383)
..+.|.|.+-+| ++||-+.=+ ......|.|.....++| +|.|-=.|.
T Consensus 529 sdGnI~vwDLhnq~~VrqfqGh---tDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 529 SDGNIAVWDLHNQTLVRQFQGH---TDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred cCCcEEEEEcccceeeecccCC---CCCceeEEecCCCceeecCCCccceeehh
Confidence 344555554444 444444311 11235566654578888 466655564
No 90
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=20.35 E-value=67 Score=38.01 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=3.6
Q ss_pred CceEEEE
Q 016742 180 SKHIWID 186 (383)
Q Consensus 180 s~nVwID 186 (383)
++..||+
T Consensus 200 s~~q~v~ 206 (2365)
T COG5178 200 SKSQWVL 206 (2365)
T ss_pred cHHHHHh
Confidence 3445555
Done!