BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016745
         (383 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7U6W9|PCXA_SYNPX Proton extrusion protein PcxA OS=Synechococcus sp. (strain
          WH8102) GN=pcxA PE=3 SV=1
          Length = 382

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 34 LPRQLSWPVLNNFHSAVDLLPYYVGSVTPNNGSID 68
          +PR +   VL  FH+A+ +    + +VTPN G +D
Sbjct: 53 VPRSVQATVLRRFHAALQICRSSLSTVTPNRGQLD 87


>sp|Q69422|POLG_GBVB Genome polyprotein OS=Hepatitis GB virus B PE=1 SV=1
          Length = 2864

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 2   SRYLLVLLLCFLGLGFGQGFKVPFRVNDVLPVLPR----QLSWPVLNNFHSAVDLLPYYV 57
           S+YL++  LC+L L FG+    P R     PVLP     Q  W VL+    A   L +++
Sbjct: 593 SKYLILAYLCYLSLCFGRASGYPLR-----PVLPSQSYLQAGWDVLSKAQVAPFALIFFI 647


>sp|Q9FFQ1|RH31_ARATH DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana
           GN=RH31 PE=2 SV=2
          Length = 716

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 250 KDKEGNL-WVGESGHENEKGEEIIVVIPWDEWWELALKD 287
           KD+E  +  +G +G + ++GE I+++ PW+E++  +LKD
Sbjct: 585 KDREQYIHRLGRTGRKGKEGEGILLLAPWEEYFLSSLKD 623


>sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana
           GN=RH26 PE=1 SV=2
          Length = 850

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 29/45 (64%)

Query: 258 VGESGHENEKGEEIIVVIPWDEWWELALKDDSNPQIALLPLHPDV 302
           +G +G + ++GE ++++ PW+E++  ++KD    +  L P+ P+ 
Sbjct: 728 LGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDPEA 772


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,048,389
Number of Sequences: 539616
Number of extensions: 7279065
Number of successful extensions: 14237
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14232
Number of HSP's gapped (non-prelim): 6
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)