Query 016745
Match_columns 383
No_of_seqs 47 out of 49
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 98.6 1.5E-07 5.3E-12 85.7 10.7 103 209-327 37-150 (214)
2 2if6_A Hypothetical protein YI 98.5 2.8E-07 9.5E-12 81.0 8.1 122 208-355 1-122 (186)
3 4h4j_A Hypothetical protein; P 59.5 16 0.00054 34.2 6.2 72 209-299 168-239 (240)
4 2jyx_A Lipoprotein SPR; soluti 39.3 38 0.0013 28.2 4.8 52 206-282 62-114 (136)
5 2im9_A Hypothetical protein; s 36.4 70 0.0024 31.5 6.8 80 210-300 239-322 (333)
6 2p1g_A Putative xylanase; stru 34.9 78 0.0027 29.9 6.7 56 210-282 170-226 (249)
7 3jxo_A TRKA-N domain protein; 23.0 74 0.0025 23.4 3.5 29 208-239 57-85 (86)
8 3j21_U 50S ribosomal protein L 19.8 35 0.0012 29.1 1.2 16 293-308 26-41 (121)
9 1rwi_B Serine/threonine-protei 16.9 82 0.0028 26.0 2.8 21 244-265 236-256 (270)
10 1vm9_A Toluene-4-monooxygenase 15.5 1.9E+02 0.0066 22.4 4.5 55 208-280 7-68 (111)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=98.63 E-value=1.5e-07 Score=85.68 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHhcc-
Q 016745 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD- 287 (383)
Q Consensus 209 ~~dIhsGDfL~iski~gr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd- 287 (383)
.+++++||.|.++ |+ +.++.+|+++|+|..+|.+|.+.+ +++++|+|+.. ..+|+..|+++|.+ .+..
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~-----~~GV~~~~L~~fl~-~~~~~ 105 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE-----DDGVRIVPLEHYIK-NYENS 105 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET-----TTEEEEEETHHHHH-CGGGS
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC-----CCCEEEecHHHHHH-Hhhcc
Confidence 6799999999996 34 778999999999999999999987 78999999953 35699999999975 1211
Q ss_pred --CCCCcEEEee--------CChHHHhhcchHHHHHHHHhhcCCcceeee
Q 016745 288 --DSNPQIALLP--------LHPDVRAKFNSTAAWEYARSMSGKPYGYHN 327 (383)
Q Consensus 288 --~a~~~ValLP--------L~~e~RakFN~TAAwef~~~~eG~PYGYhN 327 (383)
..+-.|++.. |.+|.++ ++.+|+++..|+||.+.+
T Consensus 106 ~~~y~~~i~V~Rl~~~~~v~lt~~~~~-----~l~~~a~~~lGkpYd~~~ 150 (214)
T 3kw0_A 106 NNRYNGSLFIARHELLQNVNDDSEMIR-----NLIKVGFSLLNSGYDKNE 150 (214)
T ss_dssp SSCCSEEEEEEEEGGGTTSCTTSHHHH-----HHHHHHHHHCCSCCCHHH
T ss_pred cccccCceEEEEeccccccCCCHHHHH-----HHHHHHHHhcCCCCCcHH
Confidence 2223577764 5555554 588999999999999854
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=98.49 E-value=2.8e-07 Score=80.97 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=87.3
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHhcc
Q 016745 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD 287 (383)
Q Consensus 208 ~~~dIhsGDfL~iski~gr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd 287 (383)
+++++++||.|... |+ +.+..+|+.+|++..+|.+|.+.+ +|+.+|+|+.. +|+..+.++|.+.
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~~-------gV~~~~l~~f~~~---- 64 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAVG-------PVKYTPLKQWIAH---- 64 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEESS-------SEEEEEHHHHHHT----
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeCC-------CeEEEEHHHHHhh----
Confidence 46789999998764 33 568899999999999999999975 78899999972 5999999999752
Q ss_pred CCCCcEEEeeCChHHHhhcchHHHHHHHHhhcCCcceeeeeeEEEEecCCCCCCCCCChhHHHHHHHH
Q 016745 288 DSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTMADNYPPPLDAHLVVSVMSM 355 (383)
Q Consensus 288 ~a~~~ValLPL~~e~RakFN~TAAwef~~~~eG~PYGYhN~iFsWIDT~~dNyPppLd~~~v~~v~s~ 355 (383)
..+-++++.+++.++.. -...+|.+++.+..|+||.|.. . .| ++ .-.=++||+.++.-
T Consensus 65 ~~~~~~~v~Rl~~~ls~-~~~~~~~~~a~~~~G~pY~~~f-~---~~--~~---~~yCSelV~~ay~~ 122 (186)
T 2if6_A 65 GEKGKYVVRRVEGGLSV-EQQQKLAQTAKRYLGKPYDFSF-S---WS--DD---RQYCSEVVWKVYQN 122 (186)
T ss_dssp SGGGCEEEEEETTCCCH-HHHHHHHHHHGGGTTCCBCTTC-C---SS--SS---SBCHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCH-HHHHHHHHHHHHHcCCcCCccc-c---CC--CC---cEEhHHHHHHHHHH
Confidence 11236888888753211 1134678899999999999942 2 11 11 12335888888754
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=59.52 E-value=16 Score=34.17 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHhccC
Q 016745 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (383)
Q Consensus 209 ~~dIhsGDfL~iski~gr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~ 288 (383)
.+.|++||.++|.+= - .|--..|.-++.|. +|+|+...--.. .++-.|...|..|+.+ .+.
T Consensus 168 ~~~l~~GDiIai~t~---~----------~GLDvsH~Giai~~-~~~l~l~hASS~--~~~vvv~d~pl~~Yl~---~~~ 228 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN---T----------PGLDVAHMGIAFYA-DNKLLLVHASST--DKKVVVSKVPLSQMLK---DNN 228 (240)
T ss_dssp CTTSCTTCEEEEEEC---S----------TTCSEEEEEEEEEE-TTEEEEEEEETT--TTEEEECSSCHHHHHH---HCT
T ss_pred HhhCCCCcEEEEEec---C----------CCceEEEEEEEEEE-CCeEEEEEcCCC--CCceEEcCccHHHHHh---hCC
Confidence 467999999999863 2 35566899999996 888999873222 2334556789999974 333
Q ss_pred CCCcEEEeeCC
Q 016745 289 SNPQIALLPLH 299 (383)
Q Consensus 289 a~~~ValLPL~ 299 (383)
+.+=|.++..+
T Consensus 229 ~~~GI~V~R~k 239 (240)
T 4h4j_A 229 KWTGIRVLRMK 239 (240)
T ss_dssp TEEEEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 44446666543
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=39.34 E-value=38 Score=28.19 Aligned_cols=52 Identities=12% Similarity=0.447 Sum_probs=33.0
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhH-HHH
Q 016745 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE-WWE 282 (383)
Q Consensus 206 ~i~~~dIhsGDfL~iski~gr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pwee-W~~ 282 (383)
.++.+++++||+|... +|+..+|..|.+= +|+ ++++... ..|+..+.++ ||.
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~~-----~gV~i~~l~~~yw~ 114 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNEPYWK 114 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEETT-----TEEEEEETTSHHHH
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECCC-----CCEEEEECCchHhH
Confidence 5677899999998775 2334789998883 564 4554332 2355666654 553
No 5
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=36.44 E-value=70 Score=31.51 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHh-hcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHHHh--c
Q 016745 210 EDVHSGDFLAVSKIRGRWGGFETLEKW-VTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELAL--K 286 (383)
Q Consensus 210 ~dIhsGDfL~iski~gr~dG~d~li~W-~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~--k 286 (383)
+.|++||.|+|.+= .| .|.++ ++|--..|+-++.|. +|+|+..---.. .+ .|..-|..|+.+... +
T Consensus 239 ~~I~~GDII~I~t~--~~----~l~~~ig~GLDVsHvGiai~~-~g~l~lrhASS~---~~-kVVd~pL~~Yl~~~~~~~ 307 (333)
T 2im9_A 239 SQIPNGAVIEIIRP--NW----DLRQQIGTELDISHLGFAIWI-NNELFFRQASSQ---YG-KVVDVSLIDYLDKARSSP 307 (333)
T ss_dssp TTSCTTCEEEEEEE--EE----CCHHHHSSCEEEEEEEEEEEE-TTEEEEEEEETT---TT-EEEEEEHHHHHHHHTTCS
T ss_pred hhCCCCCEEEEEec--Cc----cccccccCCCcceEEEEEEEE-CCeEEEEecCCC---CC-eEEeccHHHHHhhcccCC
Confidence 78999999999952 11 11122 246677899999997 789998754333 22 455888999976211 2
Q ss_pred cCCCCc-EEEeeCCh
Q 016745 287 DDSNPQ-IALLPLHP 300 (383)
Q Consensus 287 d~a~~~-ValLPL~~ 300 (383)
...|.. +.++|++|
T Consensus 308 s~~GI~V~r~~p~~~ 322 (333)
T 2im9_A 308 TIKGINIQVVLPEKP 322 (333)
T ss_dssp SCCEEEEEEECCSSC
T ss_pred CccceEEEEecCCCc
Confidence 223333 23456665
No 6
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=34.89 E-value=78 Score=29.92 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=40.3
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCccccccee-ecchhHHHH
Q 016745 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIV-VIPWDEWWE 282 (383)
Q Consensus 210 ~dIhsGDfL~iski~gr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq-~~pweeW~~ 282 (383)
+.|++||.|+|..= ..|--..|+-++.|. +|+++..-.-..-. ++|- ..|..|++.
T Consensus 170 ~~l~~GDiI~i~t~-------------~~GLDVsHvGi~i~~-~~~l~f~hASs~~~---kVv~s~~~l~~Y~~ 226 (249)
T 2p1g_A 170 PWIKNGDIIALTTN-------------TPGLDVSHMGIAIYI-KGQLHLLHASSKEG---KVVVGKTALSQMLK 226 (249)
T ss_dssp TTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETTTT---EEEECSSCHHHHHH
T ss_pred hcCCCCCEEEEEeC-------------CCCCceeEEEEEEEE-CCeEEEEEcCCCCC---eEEECCcCHHHHHh
Confidence 77999999999852 145567899999997 89999885433321 3333 349999974
No 7
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=22.96 E-value=74 Score=23.40 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcC
Q 016745 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTG 239 (383)
Q Consensus 208 ~~~dIhsGDfL~iski~gr~dG~d~li~W~tG 239 (383)
...-|++||.|.|. |+-+.++.+.+..+|
T Consensus 57 ~~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 57 GDTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TTCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 35679999999987 455777887776654
No 8
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=19.80 E-value=35 Score=29.13 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.0
Q ss_pred EEEeeCChHHHhhcch
Q 016745 293 IALLPLHPDVRAKFNS 308 (383)
Q Consensus 293 ValLPL~~e~RakFN~ 308 (383)
+---||++|+|++||-
T Consensus 26 ~msa~LSkeLR~ky~~ 41 (121)
T 3j21_U 26 LMSAPLSRELREKYKV 41 (121)
T ss_dssp GSEEEBCHHHHHHTCC
T ss_pred hhcCcCCHHHHHHhCC
Confidence 3456999999999974
No 9
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=16.93 E-value=82 Score=25.98 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=15.7
Q ss_pred ceeEEeecCCCcEEEEecCCCC
Q 016745 244 HTAVCLKDKEGNLWVGESGHEN 265 (383)
Q Consensus 244 Htav~Lrd~dGeL~v~ES~~~~ 265 (383)
-+.+++ ++||+|||.++++..
T Consensus 236 p~~i~~-~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 236 PLAVAV-DSDRTVYVADRGNDR 256 (270)
T ss_dssp EEEEEE-CTTCCEEEEEGGGTE
T ss_pred ceeEEE-CCCCCEEEEECCCCE
Confidence 345555 689999999988764
No 10
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=15.47 E-value=1.9e+02 Score=22.38 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCC--Cc---cc--ccceeecchhHH
Q 016745 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHE--NE---KG--EEIIVVIPWDEW 280 (383)
Q Consensus 208 ~~~dIhsGDfL~iski~gr~dG~d~li~W~tGs~aGHtav~Lrd~dGeL~v~ES~~~--~~---~~--~~~Iq~~pweeW 280 (383)
..+||..|+.+.+. + . .|...+..|+.||++++.+..-. .. ++ +...-+=||.-|
T Consensus 7 ~~~~l~~g~~~~~~-~----~-------------~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~ 68 (111)
T 1vm9_A 7 SLDDIWVGEMETFE-T----S-------------DGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLW 68 (111)
T ss_dssp EGGGSCTTCEEEEE-C----T-------------TCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCC
T ss_pred EHHHCCCCCeEEEE-E----c-------------CCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCC
Confidence 45788889876554 2 0 24567777888999999986422 11 11 223344577777
Done!