BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016746
(383 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZT6|DEPD7_XENLA DEP domain-containing protein 7 OS=Xenopus laevis GN=depdc7 PE=2
SV=1
Length = 522
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 3 GLIKFLVSCRKLIVITIMRICMQLFKSPI-SHFVMFSYFPFMQVMDKSNFKITTDEEIDV 61
G+ + LV+ + + ++C++L SP F YF D S F++ +EE D
Sbjct: 330 GIAELLVNGKTEPALEATQLCLKLLDSPSREEFRRLLYF-MALAADPSEFRL--NEETDN 386
Query: 62 ALSGQYLLHLPITVNES--KLDKKLLKRYFEEHHHD--HLPD-----FADKYVIFRRGIG 112
++ + + I N+S K LL + +HH D +P +DK V ++G
Sbjct: 387 RMTVKRMFCRAIVNNKSLSKGKCDLLVLFILDHHKDVFKIPGSLHKMVSDKLVAIQQGTD 446
Query: 113 VDQTTDYFFMEKVD 126
D+ T Y F ++VD
Sbjct: 447 PDRDTGYTFCQRVD 460
>sp|Q0VGW0|DEPD7_XENTR DEP domain-containing protein 7 OS=Xenopus tropicalis GN=depdc7
PE=2 SV=2
Length = 520
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 3 GLIKFLVSCRKLIVITIMRICMQLFKSPI-SHFVMFSYFPFMQVMDKSNFKITTDEEIDV 61
G+ + LV+ + + ++C++L SP F YF D S F++ EE D
Sbjct: 328 GIAELLVNGKNEPALEATQLCLKLLDSPSREEFRRLLYF-MALAADPSEFRL--HEETDN 384
Query: 62 ALSGQYLLHLPITVNE--SKLDKKLLKRYFEEHHHD--HLPD-----FADKYVIFRRGIG 112
++ + + + N+ SK LL + +HH D +P +DK V ++G
Sbjct: 385 RMTVKRMFSRAVVCNKNLSKGKCDLLVLFILDHHKDVFKIPGSLHKMVSDKLVAIQQGSD 444
Query: 113 VDQTTDYFFMEKVD 126
D+ T Y F ++VD
Sbjct: 445 PDRDTGYTFCQRVD 458
>sp|B2SNZ1|MRAY_XANOP Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Xanthomonas
oryzae pv. oryzae (strain PXO99A) GN=mraY PE=3 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 218 ERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHE-IDL 276
G++L + ++P A + +P K+ L PL V F+V A +V + L + +D
Sbjct: 143 AAGLFLYYTADVP-AAITFYIPMFKSIAL-PLAGVSFVVIAYFWIVGFSNAVNLTDGLD- 199
Query: 277 WVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDV 331
G+AI+ TV+ CA F + N++ L G G L+ +C +
Sbjct: 200 --GLAIMPTVLVACALGVFAYASG-----NVVFAEYLKIPLIPGAGELIIICSAI 247
>sp|Q8PPB0|MRAY_XANAC Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=mraY PE=3 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 218 ERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHE-IDL 276
G++L + ++P A + +P K+ L PL V F+V A +V + L + +D
Sbjct: 143 AAGLFLYYTADVP-AAITFYIPMFKSIAL-PLAGVSFVVIAYFWIVGFSNAVNLTDGLD- 199
Query: 277 WVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDV 331
G+AI+ TV+ CA F + N++ L G G L+ +C +
Sbjct: 200 --GLAIMPTVLVACALGVFAYASG-----NVVFAEYLKIPLIPGAGELIIICSAI 247
>sp|Q3BXF4|MRAY_XANC5 Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=mraY PE=3
SV=1
Length = 361
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 218 ERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHE-IDL 276
G++L + ++P A + +P K+ L PL V F+V A +V + L + +D
Sbjct: 143 AAGLFLYYTADVP-AAITFYIPMFKSIAL-PLAGVSFVVIAYFWIVGFSNAVNLTDGLD- 199
Query: 277 WVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDV 331
G+AI+ TV+ CA F + N++ L G G L+ +C +
Sbjct: 200 --GLAIMPTVLVACALGVFAYASG-----NVVFAEYLKIPLIPGAGELIIICSAI 247
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 202 DRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVG 261
+ +IV S K+ L+HF N P A + P + DW + L A+
Sbjct: 1338 ENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGH 1397
Query: 262 LVAVITSAQLHEIDLWV-GMAILST 285
+ ++T Q ++ L G I+ST
Sbjct: 1398 TIVLLTGEQTMDLKLAQRGQLIIST 1422
>sp|B0K1A1|MIAB_THEPX (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermoanaerobacter sp. (strain X514) GN=miaB PE=3
SV=1
Length = 471
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 69 LHLPITVNESKLDKKLLKRYFEEHH-------HDHLPDFADKYVIFRRGIGVDQTTDYFF 121
LHLP+ +K+ KK+ ++Y +EH+ ++PD A I +G T+ F
Sbjct: 289 LHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVRSNIPDIAITTDII---VGFPGETEEDF 345
Query: 122 MEKVDML 128
+E +D++
Sbjct: 346 LETLDLV 352
>sp|B0K9L4|MIAB_THEP3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=miaB PE=3 SV=1
Length = 471
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 69 LHLPITVNESKLDKKLLKRYFEEHH-------HDHLPDFADKYVIFRRGIGVDQTTDYFF 121
LHLP+ +K+ KK+ ++Y +EH+ ++PD A I +G T+ F
Sbjct: 289 LHLPVQAGSNKILKKMNRKYTKEHYLEIIDKVRSNIPDIAITTDII---VGFPGETEEDF 345
Query: 122 MEKVDML 128
+E +D++
Sbjct: 346 LETLDLV 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,209,272
Number of Sequences: 539616
Number of extensions: 5731670
Number of successful extensions: 19396
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19392
Number of HSP's gapped (non-prelim): 16
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)