Query 016746
Match_columns 383
No_of_seqs 105 out of 117
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12576 DUF3754: Protein of u 100.0 9.5E-36 2.1E-40 263.3 14.7 121 201-322 1-141 (141)
2 PF11460 DUF3007: Protein of u 72.2 24 0.00053 30.4 7.8 63 246-308 1-75 (104)
3 PF14015 DUF4231: Protein of u 53.8 70 0.0015 26.3 7.3 21 288-308 65-85 (112)
4 PHA01814 hypothetical protein 50.1 3.4 7.3E-05 36.1 -1.2 48 61-115 54-101 (137)
5 PF04369 Lactococcin: Lactococ 45.8 15 0.00033 28.7 1.9 24 49-72 5-28 (60)
6 PF07120 DUF1376: Protein of u 45.6 37 0.0008 27.7 4.3 63 301-363 22-87 (88)
7 PRK06743 flagellar motor prote 40.2 2.6E+02 0.0057 27.5 10.0 67 297-367 64-131 (254)
8 PF11694 DUF3290: Protein of u 36.4 2.9E+02 0.0063 25.1 9.0 55 247-302 13-73 (149)
9 PHA02888 hypothetical protein; 34.7 33 0.0007 28.4 2.3 27 351-378 35-61 (96)
10 PF11469 Ribonucleas_3_2: Ribo 30.1 52 0.0011 28.7 2.9 21 334-356 59-79 (120)
11 COG3114 CcmD Heme exporter pro 30.0 2.7E+02 0.0059 22.3 6.6 31 286-316 12-42 (67)
12 PF04391 DUF533: Protein of un 28.5 3.8E+02 0.0082 25.3 8.6 23 279-301 34-56 (188)
13 COG2979 Uncharacterized protei 27.0 3.4E+02 0.0074 26.5 8.1 24 280-303 63-86 (225)
14 PF12597 DUF3767: Protein of u 25.2 3.2E+02 0.007 23.8 7.0 69 244-315 38-107 (118)
15 PRK08456 flagellar motor prote 25.1 5.1E+02 0.011 25.3 9.2 54 307-363 76-130 (257)
16 PRK08124 flagellar motor prote 22.3 7.5E+02 0.016 24.3 12.3 59 304-366 75-134 (263)
17 PF11434 CHIPS: Chemotaxis-inh 20.8 1.5E+02 0.0032 24.2 3.7 34 179-212 7-40 (91)
18 PF13865 FoP_duplication: C-te 20.3 93 0.002 24.9 2.5 16 351-366 39-54 (74)
19 PRK09109 motC flagellar motor 20.2 8E+02 0.017 23.8 13.1 11 353-363 120-130 (246)
No 1
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=100.00 E-value=9.5e-36 Score=263.26 Aligned_cols=121 Identities=40% Similarity=0.647 Sum_probs=108.6
Q ss_pred cceEEEEEeeccccc--------------cCCCCeEEEeeCCCCCCCccccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 016746 201 FDRIIVLYRQASTKS--------------KAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVI 266 (383)
Q Consensus 201 FkrVVvlyR~~~~~~--------------k~~~~l~LK~FkdIP~aDLE~llPekK~v~~~~~D~~~l~v~avvg~v~~~ 266 (383)
||||||+||.++++. ..+++|+||+||||||+|||+||||+| |+|||+||+++++++++|+++++
T Consensus 1 f~~vvllyr~~~~~~~~~~~~~~~~~~~~~~~~~i~lK~FkdIP~aDLE~llP~~k-v~~~~~D~~~l~~~~vvg~v~~~ 79 (141)
T PF12576_consen 1 FEEVVLLYRFKDSRKFKAKKESIQEAPKKFKPGPIYLKSFKDIPMADLEMLLPEKK-VRMRPFDRVKLGVSAVVGGVAVF 79 (141)
T ss_pred CcEEEEEEEecccccchhhhhhhhhccccCCCCCeEEEEeCCCCccchhHhCCCCc-CCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999999877432 136999999999999999999999998 99999999999999999999999
Q ss_pred HHhhcch----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh
Q 016746 267 TSAQLHE----I--DLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKG 322 (383)
Q Consensus 267 ~~l~~~~----~--d~~~i~a~ls~l~~~~~k~~~~y~~~~~ry~~~lt~~LY~K~l~nn~G 322 (383)
.++.... + .++..+++++++++||+|+|++|+|+|.+||+++|++|||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~ry~~~l~~~LY~K~l~sn~G 141 (141)
T PF12576_consen 80 VKLVGMSLLLLSDIFLILILSLLSALGGYAFRQYTGYKNNRARYQLLLTKTLYFKNLDSNRG 141 (141)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 8865433 2 256677888889999999999999999999999999999999999998
No 2
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=72.17 E-value=24 Score=30.42 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHHHHHHHHH---HHhhcc--hhhHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 016746 246 LTPLDWVKFLVSAVVGLVAVI---TSAQLH--EIDLW----VGMAILSTVIGYCAKTYF---TFQQNMAAYQNMI 308 (383)
Q Consensus 246 ~~~~D~~~l~v~avvg~v~~~---~~l~~~--~~d~~----~i~a~ls~l~~~~~k~~~---~y~~~~~ry~~~l 308 (383)
||..|-+.+++.+.+.+...- ..++++ ++.+| .++++++=+++|.+|+.+ +|.++|.+|...+
T Consensus 1 MtR~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~ 75 (104)
T PF11460_consen 1 MTRIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAV 75 (104)
T ss_pred CcccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHH
Confidence 455566666655554433322 233333 22223 233444446799999986 5999999998865
No 3
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=53.82 E-value=70 Score=26.33 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016746 288 GYCAKTYFTFQQNMAAYQNMI 308 (383)
Q Consensus 288 ~~~~k~~~~y~~~~~ry~~~l 308 (383)
.-++...+++++++.+|...-
T Consensus 65 ~~~~~~~~~~~~~W~~~r~ta 85 (112)
T PF14015_consen 65 LASLAAFFRFHERWIRYRATA 85 (112)
T ss_pred HHHHHHHhchhHHHHHHHHHH
Confidence 344566778888888887643
No 4
>PHA01814 hypothetical protein
Probab=50.06 E-value=3.4 Score=36.08 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=39.1
Q ss_pred HhhcCCceeeeecccccchhhHHHHHHHhhhccCCCCcCcccceeeecCCCcccc
Q 016746 61 VALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQ 115 (383)
Q Consensus 61 ~Al~~~yLl~Lpi~vd~~klD~~lL~~y~~~~~~~~l~~~~d~~liFrRG~~~d~ 115 (383)
.-.++.=||+|.|++|.+|.==..|+-||.+| .+|--+||+||+-...
T Consensus 54 d~~~e~dlftldididikkhvfn~l~~yy~~~-------~~~~~iiykk~v~m~~ 101 (137)
T PHA01814 54 DTKNENDLFTLDIDIDIKKHVFNCLKVYYIEH-------TEDINIIYKKGVYMGC 101 (137)
T ss_pred ccccccceEEEEeeeehhhheeeeEEEeeecc-------cccceeeeecceEEcc
Confidence 45678889999999999988777888888888 5667899999986433
No 5
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=45.85 E-value=15 Score=28.70 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=18.5
Q ss_pred cCCcccCHHHHHHhhcCCceeeee
Q 016746 49 SNFKITTDEEIDVALSGQYLLHLP 72 (383)
Q Consensus 49 anF~~ls~~e~~~Al~~~yLl~Lp 72 (383)
-||+++|++|++.+-.+.|-+.+.
T Consensus 5 ~nf~~~sdeeL~~i~GG~l~~iqs 28 (60)
T PF04369_consen 5 LNFNILSDEELSKINGGGLPYIQS 28 (60)
T ss_pred ccceecCHHHHhhccCCcceeeee
Confidence 499999999999886665555443
No 6
>PF07120 DUF1376: Protein of unknown function (DUF1376); InterPro: IPR010781 This entry is represented by Bacteriophage PBC5 (Sinorhizobium phage PBC5), Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.
Probab=45.59 E-value=37 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHH-HHhccCchhHHHHHHhHH--HhhHhhHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 016746 301 MAAYQNMITQSMY-DKQLDSGKGTLLHLCDDV--IQQEVKEVIISFFILMEQGKATRQDLDLRCEE 363 (383)
Q Consensus 301 ~~ry~~~lt~~LY-~K~l~nn~GvL~~L~d~A--eeQe~KEaiLAY~~Ll~~g~~T~~~Ld~~~E~ 363 (383)
+-.|..++-.+.. .+.+-++..+|..+|... +.+...+.+|..+|....|......++.++++
T Consensus 22 ~gaY~~Ll~~~~~~~~plp~d~~~Lar~~~~s~~~~~~a~~~ll~~f~~~~dg~~~~~r~e~Ei~~ 87 (88)
T PF07120_consen 22 HGAYMRLLDLYYDTEGPLPDDDKRLARICGCSTKEWRKALDFLLREFFRLEDGRWWNKRCEEEIAK 87 (88)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCCCCEehHHHHHHHHh
Confidence 3455666544444 578899999999999876 56788899999999656688888888887764
No 7
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=40.16 E-value=2.6e+02 Score=27.52 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHhHHHhhHhhHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHH
Q 016746 297 FQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILME-QGKATRQDLDLRCEELIKE 367 (383)
Q Consensus 297 y~~~~~ry~~~lt~~LY~K~l~nn~GvL~~L~d~AeeQe~KEaiLAY~~Ll~-~g~~T~~~Ld~~~E~~L~~ 367 (383)
|+.++..|+..+......-+.+...|++ +|=++ .++.++..++.++-+- .|. .++++.+..|+-+..
T Consensus 64 f~~~~~~~~~~i~~l~~la~~aRr~GlL-aLE~~--~~~~~d~fl~~gl~l~vdg~-~~e~i~~~le~~~~~ 131 (254)
T PRK06743 64 LHRREEDLEQLTDLFVDFSKKSKKHGLL-SLEVD--GEQVDNPFIQKGIRLMLSGY-DEDELKEVLMKDVET 131 (254)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHhcCHH-HHHhh--ccCCccHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 4455666787887777777778888843 33333 4445577888776543 344 667766666655543
No 8
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.44 E-value=2.9e+02 Score=25.09 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=32.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhc--c--hhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 016746 247 TPLDWVKFLVSAVVGLVAVITSAQL--H--EIDLWV--GMAILSTVIGYCAKTYFTFQQNMA 302 (383)
Q Consensus 247 ~~~D~~~l~v~avvg~v~~~~~l~~--~--~~d~~~--i~a~ls~l~~~~~k~~~~y~~~~~ 302 (383)
.+.||++..+.+++.++.++..+.. + ....++ +++++. ++..+.=+|..|++.+.
T Consensus 13 ~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~-ll~l~giq~~~y~~~~~ 73 (149)
T PF11694_consen 13 SQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLL-LLLLIGIQYSDYQQNQN 73 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 5788999888888777776655432 1 122222 333333 23445567788877653
No 9
>PHA02888 hypothetical protein; Provisional
Probab=34.74 E-value=33 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCccccccc
Q 016746 351 KATRQDLDLRCEELIKEEFGYYRPVLLR 378 (383)
Q Consensus 351 ~~T~~~Ld~~~E~~L~~~fg~~v~F~~~ 378 (383)
++|++||. -+.+||.++-+.=++|++|
T Consensus 35 ~mt~~el~-yiq~wllekhdlfiefpid 61 (96)
T PHA02888 35 AMTPQELA-YIQEWLLEKHDLFIEFPID 61 (96)
T ss_pred CCCHHHHH-HHHHHHHhhcceeEEccHH
Confidence 38999996 4889999999999999986
No 10
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=30.14 E-value=52 Score=28.71 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=15.7
Q ss_pred hHhhHHHHHHHHHhhcCCCCHHH
Q 016746 334 QEVKEVIISFFILMEQGKATRQD 356 (383)
Q Consensus 334 Qe~KEaiLAY~~Ll~~g~~T~~~ 356 (383)
-++.|+++||++| .|.+|.+|
T Consensus 59 Gd~aEA~iAyAWL--eg~it~eE 79 (120)
T PF11469_consen 59 GDIAEALIAYAWL--EGKITIEE 79 (120)
T ss_dssp HHHHHHHHHHHHH--TTSS-HHH
T ss_pred cHHHHHHHHHHHH--hccccHHH
Confidence 4678999999999 56777554
No 11
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=30.01 E-value=2.7e+02 Score=22.29 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016746 286 VIGYCAKTYFTFQQNMAAYQNMITQSMYDKQ 316 (383)
Q Consensus 286 l~~~~~k~~~~y~~~~~ry~~~lt~~LY~K~ 316 (383)
+|||++=+|+.|.-+-..-..++.+++-.|.
T Consensus 12 MGgyafyVWlA~~~tll~l~~l~v~sv~qrr 42 (67)
T COG3114 12 MGGYAFYVWLAVGMTLLPLAVLVVHSVLQRR 42 (67)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888887777777777776653
No 12
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=28.53 E-value=3.8e+02 Score=25.30 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016746 279 GMAILSTVIGYCAKTYFTFQQNM 301 (383)
Q Consensus 279 i~a~ls~l~~~~~k~~~~y~~~~ 301 (383)
..+.+.++|+.++|.|-+|++++
T Consensus 34 ~~Gg~AalG~lA~~ayq~~q~~~ 56 (188)
T PF04391_consen 34 KYGGLAALGGLAYKAYQNWQQNQ 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 34556778899999998887664
No 13
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.05 E-value=3.4e+02 Score=26.45 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016746 280 MAILSTVIGYCAKTYFTFQQNMAA 303 (383)
Q Consensus 280 ~a~ls~l~~~~~k~~~~y~~~~~r 303 (383)
++.+.++|+.+.++|-+|++++.+
T Consensus 63 ~GglAAlG~laY~aY~N~q~~q~~ 86 (225)
T COG2979 63 LGGLAALGALAYKAYQNYQKGQIP 86 (225)
T ss_pred hhhHHHHHHHHHHHHHHHhccCcc
Confidence 455667888899999999888744
No 14
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=25.20 E-value=3.2e+02 Score=23.82 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=32.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016746 244 PGLTPLDWVKFLVSAVVGLVAVITSAQL-HEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDK 315 (383)
Q Consensus 244 v~~~~~D~~~l~v~avvg~v~~~~~l~~-~~~d~~~i~a~ls~l~~~~~k~~~~y~~~~~ry~~~lt~~LY~K 315 (383)
|.+|-.=-.=+...+++|++.++..-.. -..+|-+.--+++.+++ =.|-.|+.++.+.+...+...+.+
T Consensus 38 PCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~---we~Cr~~r~~~~~~~~~~~e~~~~ 107 (118)
T PF12597_consen 38 PCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGS---WEYCRYNRRKERQQMKRAVEAMQE 107 (118)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333444444455554432211 12344443222333344 445567777777776666655544
No 15
>PRK08456 flagellar motor protein MotA; Validated
Probab=25.10 E-value=5.1e+02 Score=25.29 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=26.4
Q ss_pred HHHHHHHHHhccCchhHHHHHHhHHHhhHhhHHHHHHHHH-hhcCCCCHHHHHHHHHH
Q 016746 307 MITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFIL-MEQGKATRQDLDLRCEE 363 (383)
Q Consensus 307 ~lt~~LY~K~l~nn~GvL~~L~d~AeeQe~KEaiLAY~~L-l~~g~~T~~~Ld~~~E~ 363 (383)
.+.+.+|+-.-.....=+..|+++.++ ....++..++- ...|. ..+++++..|+
T Consensus 76 ~li~~l~~l~~~~r~~g~laLe~~~~~--~~~~fl~~gL~~~~~g~-~~~~i~~~le~ 130 (257)
T PRK08456 76 ERIKQLVELATLARKDGVLALEGRVAQ--IEDEFLKNGLSMLVDGK-DLEEIKESMEI 130 (257)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhcccC--cHHHHHHHHHHHhhcCC-CHHHHHHHHHH
Confidence 444555555555555545666655433 33445554443 22343 55665555554
No 16
>PRK08124 flagellar motor protein MotA; Validated
Probab=22.29 E-value=7.5e+02 Score=24.26 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHhHHHhhHhhHHHHHHHHHh-hcCCCCHHHHHHHHHHHHH
Q 016746 304 YQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILM-EQGKATRQDLDLRCEELIK 366 (383)
Q Consensus 304 y~~~lt~~LY~K~l~nn~GvL~~L~d~AeeQe~KEaiLAY~~Ll-~~g~~T~~~Ld~~~E~~L~ 366 (383)
|...+ +.+|+-.-.....=+..|+++.++ ..+..+.-.+-+ ..|. +++++++..|+-+.
T Consensus 75 ~~~~i-~~l~~l~~~~r~~g~laLe~~~~~--~~~~fl~~gl~~~v~g~-~~~~i~~~le~~i~ 134 (263)
T PRK08124 75 KEELI-EQFVEWASESRREGLLALEAQLDE--IDDPFLKRGLKMVIDGQ-SPEFIRDVLEEEIE 134 (263)
T ss_pred HHHHH-HHHHHHHHHhchhhHHHHHHhhcC--chhHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 44444 344443333333334455555432 234455544433 2333 66676666665544
No 17
>PF11434 CHIPS: Chemotaxis-inhibiting protein CHIPS; InterPro: IPR020986 Chemotaxis inhibitory protein (also knows as CHIPS) is a Staphylococcus aureus-secreted virulence factor that impairs the response of neutrophils and monocytes to FPR and C5a []. CHIPS has been shown to reduce neutrophil recruitment toward C5a in mouse models (its activity is more potent on human than on mouse cells). As such, its properties may make it a candidate new anti-inflammatory therapeutic compound []. CHIPS also plays an key role in bacterial invasion, by inhibiting FMLP- and C5a-induced calcium moblisation []. By influencing 2 related receptors with very different ligand specificities (C5aR and FPR), the protein has a unique role; nevertheless, neither the manner in which it binds such structurally different molecules nor how its expression is regulated are currently unknown []. The structure of a CHIPS fragment (residues 31-121) has been solved by NMR spectroscopy []. This fragment has the same activity in blocking the C5aR relative to full-length CHIPS, but lacks FPR antagonism []. The protein has a compact fold comprising 2 short alpha-helices packed onto a 4-stranded anti-parallel beta-sheet: strands-2 and -3 are joined by a loop with a well-defined conformation []. The protein shares a high degree of structural similarity with a number of proteins, including the C-terminal domain of staphylococcal superantigen-like proteins (SSLs) 5 and 7, staphyloccocal and streptococcal superantigens TSST-1 and SPE-C, and various domains of the staphylococcal extracellullar adherence protein (EAP) [].; PDB: 2K3U_A 1XEE_A.
Probab=20.83 E-value=1.5e+02 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=25.4
Q ss_pred ecchhhHHHhhhhccccccccccceEEEEEeecc
Q 016746 179 RLENMELSFRNLLGKVTIQEPTFDRIIVLYRQAS 212 (383)
Q Consensus 179 ~l~~~~~s~~~lf~k~~lqep~FkrVVvlyR~~~ 212 (383)
++.++...++|+++|-+..-..|+.+|++-..+.
T Consensus 7 tlgklderlrnylkkgtknsaqfekmviltenkg 40 (91)
T PF11434_consen 7 TLGKLDERLRNYLKKGTKNSAQFEKMVILTENKG 40 (91)
T ss_dssp BHHHHHHHHHHHHHCC-S-GCCEEEEEEEESTT-
T ss_pred hhHHHHHHHHHHHHhcccchhhheeEEEEEcCCc
Confidence 3445677899999999999999999999875544
No 18
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=20.32 E-value=93 Score=24.85 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHH
Q 016746 351 KATRQDLDLRCEELIK 366 (383)
Q Consensus 351 ~~T~~~Ld~~~E~~L~ 366 (383)
+.|.+|||.+.++||.
T Consensus 39 ~kT~EeLDaELD~Ym~ 54 (74)
T PF13865_consen 39 PKTAEELDAELDAYMS 54 (74)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4899999999999994
No 19
>PRK09109 motC flagellar motor protein; Reviewed
Probab=20.18 E-value=8e+02 Score=23.80 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=5.0
Q ss_pred CHHHHHHHHHH
Q 016746 353 TRQDLDLRCEE 363 (383)
Q Consensus 353 T~~~Ld~~~E~ 363 (383)
.++++++..|+
T Consensus 120 ~~~~i~~~le~ 130 (246)
T PRK09109 120 EPESIRSVLEV 130 (246)
T ss_pred CHHHHHHHHHH
Confidence 44544444443
Done!