Query 016746
Match_columns 383
No_of_seqs 105 out of 117
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ztd_A Hypothetical protein PF 26.9 42 0.0014 28.4 3.0 34 334-373 70-103 (133)
2 1xee_A Chemotaxis-inhibiting p 23.8 93 0.0032 24.2 4.2 45 179-232 7-51 (91)
3 1xmk_A Double-stranded RNA-spe 18.9 93 0.0032 24.1 3.4 28 332-361 8-35 (79)
4 3udc_A Small-conductance mecha 17.1 2.2E+02 0.0077 26.4 6.3 42 253-294 72-113 (285)
5 2vv5_A MSCS, small-conductance 16.1 2.1E+02 0.0073 26.6 5.9 47 248-294 68-114 (286)
6 1j23_A HEF nuclease, ATP-depen 13.1 77 0.0026 26.9 1.7 39 171-210 43-84 (143)
7 4af3_D Incenp, inner centromer 12.7 43 0.0015 25.6 -0.0 22 224-246 35-56 (71)
8 1u5t_B Defective in vacuolar p 11.3 2.2E+02 0.0076 24.9 4.2 55 18-72 19-78 (169)
9 2ld7_A Histone deacetylase com 8.6 1.4E+02 0.0048 24.1 1.7 21 72-92 19-39 (94)
10 2cue_A Paired box protein PAX6 8.5 2.8E+02 0.0095 20.6 3.3 20 288-309 48-67 (80)
No 1
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=26.86 E-value=42 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=22.7
Q ss_pred hHhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcc
Q 016746 334 QEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGYYR 373 (383)
Q Consensus 334 Qe~KEaiLAY~~Ll~~g~~T~~~Ld~~~E~~L~~~fg~~v 373 (383)
-++.|+++||++| .|.+|.+|- -+-+++.|..+|
T Consensus 70 Gd~aEA~iAyAWl--eG~is~eEa----veilk~nl~~dv 103 (133)
T 1ztd_A 70 GDYAEALIAKAWL--MGLISEREA----VEIIKKNLYPEV 103 (133)
T ss_dssp HHHHHHHHHHHHH--TTSSCHHHH----HHHHHTTCCGGG
T ss_pred cHHHHHHHHHHHH--hccccHHHH----HHHHHhcCcHhh
Confidence 4678999999999 577776542 234555555554
No 2
>1xee_A Chemotaxis-inhibiting protein chips; chemotaxis inhibitory protein, superantigen, C5A, immune system; NMR {Staphylococcus aureus} PDB: 2k3u_A*
Probab=23.80 E-value=93 Score=24.19 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=33.3
Q ss_pred ecchhhHHHhhhhccccccccccceEEEEEeeccccccCCCCeEEEeeCCCCCC
Q 016746 179 RLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMA 232 (383)
Q Consensus 179 ~l~~~~~s~~~lf~k~~lqep~FkrVVvlyR~~~~~~k~~~~l~LK~FkdIP~a 232 (383)
++.++...++|+++|-+..-..|+.+|++-..+. +--.|-|.|++
T Consensus 7 tlgklderlrnylkkgtknsaqfekmviltenkg---------yytvylntpla 51 (91)
T 1xee_A 7 TLGKLDERLRNYLKKGTKNSAQFEKMVILTENKG---------YYTVYLNTPLA 51 (91)
T ss_dssp BHHHHHHHHHHHHHTTCSCGGGEEEEEEEESTTC---------EEEEESSSCCC
T ss_pred hhHHHHHHHHHHHHhcccchhhheeeEEEecCCc---------eEEEEecCcch
Confidence 3445677899999999999999999999875554 34445555554
No 3
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=18.87 E-value=93 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.7
Q ss_pred HhhHhhHHHHHHHHHhhcCCCCHHHHHHHH
Q 016746 332 IQQEVKEVIISFFILMEQGKATRQDLDLRC 361 (383)
Q Consensus 332 eeQe~KEaiLAY~~Ll~~g~~T~~~Ld~~~ 361 (383)
...+.+|.||.| |..+|+.|..+|...+
T Consensus 8 ~~~~~~~~IL~~--Lk~~g~~ta~eiA~~L 35 (79)
T 1xmk_A 8 DMAEIKEKICDY--LFNVSDSSALNLAKNI 35 (79)
T ss_dssp HHHHHHHHHHHH--HHHTCCEEHHHHHHHH
T ss_pred cchhHHHHHHHH--HHHcCCcCHHHHHHHc
Confidence 446789999955 8888998888887654
No 4
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=17.09 E-value=2.2e+02 Score=26.35 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Q 016746 253 KFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTY 294 (383)
Q Consensus 253 ~l~v~avvg~v~~~~~l~~~~~d~~~i~a~ls~l~~~~~k~~ 294 (383)
.-.+..+++++.++..++.+...+....+++++.+|+++|-.
T Consensus 72 ~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~ 113 (285)
T 3udc_A 72 VRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNL 113 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556666665556666666666667777653
No 5
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=16.11 E-value=2.1e+02 Score=26.57 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Q 016746 248 PLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTY 294 (383)
Q Consensus 248 ~~D~~~l~v~avvg~v~~~~~l~~~~~d~~~i~a~ls~l~~~~~k~~ 294 (383)
...++.-.+..+++++.++..++.+...+....+++++.+|+++|-.
T Consensus 68 ~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~ 114 (286)
T 2vv5_A 68 FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGS 114 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666655566666777777777777653
No 6
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=13.06 E-value=77 Score=26.88 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=28.9
Q ss_pred CCceeeeeecchhhHHHhh--hhccc-cccccccceEEEEEee
Q 016746 171 NDLSVERHRLENMELSFRN--LLGKV-TIQEPTFDRIIVLYRQ 210 (383)
Q Consensus 171 ~~~~veRi~l~~~~~s~~~--lf~k~-~lqep~FkrVVvlyR~ 210 (383)
+..+|||.+++++-.|++. |+.+. .++. .|+++++++=.
T Consensus 43 ~~~~VERKs~~DL~~Si~dgRl~~Q~~rL~~-~~~~~~~LIE~ 84 (143)
T 1j23_A 43 EDVAIERKSANDLIQSIIDGGLFDQVKRLKE-AYSRPIMIVEG 84 (143)
T ss_dssp SSEEEEEEEHHHHHHHHHTTCHHHHHHHHHH-HCSEEEEEEES
T ss_pred CCcEEEeccHHHHHHhhhcchHHHHHHHHHh-cCCccEEEEEc
Confidence 3689999999998888875 55333 3444 68999888854
No 7
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=12.67 E-value=43 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.6
Q ss_pred EeeCCCCCCCccccccCCCCCCC
Q 016746 224 KHFRNIPMADMEIVLPEKKNPGL 246 (383)
Q Consensus 224 K~FkdIP~aDLE~llPekK~v~~ 246 (383)
++|-.|+-.|||-||++.| .++
T Consensus 35 ~IFG~i~p~~LeeIF~~~k-~r~ 56 (71)
T 4af3_D 35 ELFGTILPLDLEDIFKKSK-PRY 56 (71)
T ss_dssp HHHCCCCCCCSTTTCC-------
T ss_pred HHcCCCCCCCHHHHhCccc-ccc
Confidence 6788899999999999987 444
No 8
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=11.34 E-value=2.2e+02 Score=24.88 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCccchhh-hccc-hHHHHhhhc---CCcccCHHHHHHhhcCCceeeee
Q 016746 18 TIMRICMQLFKSPISHFVM-FSYF-PFMQVMDKS---NFKITTDEEIDVALSGQYLLHLP 72 (383)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~q~m~~a---nF~~ls~~e~~~Al~~~yLl~Lp 72 (383)
-|.-+|++-++.+-+++-- .+++ ++.....+| +-+++|.+|+..|..-==-+++|
T Consensus 19 qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~~lISp~Dl~~A~~~l~~Lg~~ 78 (169)
T 1u5t_B 19 EIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLN 78 (169)
T ss_dssp HHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCC
T ss_pred HHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHhcCCC
Confidence 4556788776656666664 7776 999999888 88999999999875533233344
No 9
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=8.63 E-value=1.4e+02 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.4
Q ss_pred ecccccchhhHHHHHHHhhhc
Q 016746 72 PITVNESKLDKKLLKRYFEEH 92 (383)
Q Consensus 72 pi~vd~~klD~~lL~~y~~~~ 92 (383)
.-.|||++|+..-|.+|...+
T Consensus 19 ~p~vdf~kL~~~tLrrY~r~y 39 (94)
T 2ld7_A 19 TPEVDLYQLQVNTLRRYKRHF 39 (94)
T ss_dssp CCCCCCSSSCHHHHHHHHHHT
T ss_pred CCCcCHHHCCHHHHHHHHHHh
Confidence 345899999999999998876
No 10
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=8.52 E-value=2.8e+02 Score=20.59 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016746 288 GYCAKTYFTFQQNMAAYQNMIT 309 (383)
Q Consensus 288 ~~~~k~~~~y~~~~~ry~~~lt 309 (383)
-.-+++| |+|+|.++-..-.
T Consensus 48 ~~qV~vW--FqNRR~k~kk~~~ 67 (80)
T 2cue_A 48 EARIQVW--FSNRRAKWRREEK 67 (80)
T ss_dssp HHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHhhHH--HHHHHHHHHHHhh
Confidence 4456888 8898988776543
Done!