BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016747
(383 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/355 (76%), Positives = 308/355 (86%), Gaps = 10/355 (2%)
Query: 1 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
MA+RGVDFKWYDGFFLSMLATSVIIVA+NW RY C YPLHIWIVVDYTTVF+FR+ MFV
Sbjct: 1 MAMRGVDFKWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFV 60
Query: 61 DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
DNGLASG+GLD G QQR A FCGRVVVLS+LSLLLYPFLWAWT+IGT WFT ++ CLPEE
Sbjct: 61 DNGLASGLGLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEE 120
Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
GQKWGFLIWL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+W
Sbjct: 121 GQKWGFLIWLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDW 180
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
AFEAAGQEMRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLE
Sbjct: 181 AFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLE 240
Query: 241 EFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSS 300
EFH+G+EVRGLPCAHNFH+ECID+WLRLNVKCPRCRCSVFP+LDLSALSNL+++ +E+ S
Sbjct: 241 EFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPDLDLSALSNLQSSGTEQHS 300
Query: 301 ASSVVTT-TRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGV 354
+ T+ RY+R+QP S+SY +R+Q L+ PVH TD AL+T ENGGV
Sbjct: 301 QVNTETSEARYIRSQPQSESYFLRVQSLIHPVH---------TDTALETAENGGV 346
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
A +A Q G + H ++ TA + + +PK R+ + C +CL+
Sbjct: 122 AMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQ 181
Query: 241 EFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 276
+F VG VR LP C H FH+ CID+WLR + CP CR
Sbjct: 182 DFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 27/109 (24%)
Query: 203 LYLTAAQREAVEALIQELPKFRL-------------KAVPTDC--------------SEC 235
LY A Q A + I ++PKFR + + T+C +EC
Sbjct: 279 LYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKARGIMTECGTDSPIERSLSPEDAEC 338
Query: 236 PICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 284
ICL E+ G E+R LPC H+FH CID+WL +N +CP C+ ++ N +
Sbjct: 339 CICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNAN 387
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 200 HPGLYLTAAQREAVEALIQELPKFRLKAVP-TDCSE----CPICLEEFHVGNEVRGLP-C 253
H L+ T + L++++PK + TD SE C +CL++F +G VR LP C
Sbjct: 156 HTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHC 215
Query: 254 AHNFHIECIDEWLRLNVKCPRCR 276
H FH+ CID WL + CP CR
Sbjct: 216 HHMFHLPCIDNWLLRHGSCPMCR 238
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 226 KAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 279
K +C +C +CL EF G+ VR LP C H FH+ECIDEWLR + CP CR ++
Sbjct: 147 KTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 222 KFRLKAVPTDC----SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277
K +++ P + EC IC+E F + ++V LPC H FH CI WLR+N C CR
Sbjct: 379 KMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRA 438
Query: 278 SVFPNLDLSALSNLRTADSERSS--ASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGN 335
V PN ++ +A+ S A+ +TT ++S+ Q LS H +
Sbjct: 439 PVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTNDQGATLRNESFNAASQSNLSSEHGHS 498
Query: 336 TRLPNDTDIALQTVE 350
+R P D + + +E
Sbjct: 499 SRTPMDDFVDEEPLE 513
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 211 EAVEALIQELPKFRLKA---VPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWL 266
E ++ I LP K + D S+C +CL EF +E+R LP C+H FH+ECID WL
Sbjct: 95 EIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWL 154
Query: 267 RLNVKCPRCR 276
N CP CR
Sbjct: 155 LTNSTCPLCR 164
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 32/116 (27%)
Query: 203 LYLTAAQREAVEALIQELPKFRLK------------------AVPTDC------------ 232
LY A Q A + I++L KF+ + + T+C
Sbjct: 289 LYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQ 348
Query: 233 --SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS 286
+EC ICL + G E+R LPC H+FH C+D+WL +N CP C+ ++ + +L
Sbjct: 349 EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLD 404
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ E+ GN++R LPC+H +HI CID WL N CP CR +V
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ E+ GN++R LPC+H +HI CID WL N CP CR +V
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 184 AAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDC---SECPICLE 240
AAG Q + P + AA + + ++Q LPK + +EC ICL
Sbjct: 60 AAGNRTVSGSQTQSPQPP---VAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLA 116
Query: 241 EFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 276
EF G+E+R LP C H FH+ CID WL + CP CR
Sbjct: 117 EFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCR 153
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ E+ GN++R LPC+H +H+ CID WL N CP CR +V
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 591
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ E+ GN++R LPC+H +H+ CID WL N CP CR +V
Sbjct: 585 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ E+ GN++R LPC+H +H+ CID WL N CP CR +V
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 193 GQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPT---------DCSECPICLEEFH 243
G D+ + + GL A +Q LP+ A + D +EC ICL +F
Sbjct: 60 GGDSPSPNKGLKKKA---------LQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFA 110
Query: 244 VGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 276
G E+R LP C H+FH+ECID+WL CP CR
Sbjct: 111 DGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 214 EALIQELPK--FRLKAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNV 270
E IQ PK + PT S C ICL ++ + +R LP C H FH++CID WLRLN
Sbjct: 124 EDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNP 183
Query: 271 KCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTR 309
CP CR S P + L T +E +S V TR
Sbjct: 184 TCPVCRTSPLP-------TPLSTPLAEVVPLASSVAATR 215
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 17/103 (16%)
Query: 214 EALIQELPKFRLKAV------PTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWL 266
++LI LP F K++ P DC P+CL EF +++R LP C+H FH+ECID WL
Sbjct: 102 QSLIDTLPVFHYKSIVGLKISPFDC---PVCLCEFETEDKLRLLPKCSHAFHVECIDTWL 158
Query: 267 RLNVKCPRCRCSVFPNLDLSALSNLRTA-----DSERSSASSV 304
+ CP CR ++ S+ NL ++ +SE+SS V
Sbjct: 159 LSHSTCPLCRSNLLSG--FSSHHNLSSSYLLVLESEQSSRDMV 199
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 217 IQELPKFRLKAVP--TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCP 273
I+ LP FR A+ EC +CL +F +R LP C H FHI CID+WL + CP
Sbjct: 104 IESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCP 163
Query: 274 RCRCSVFPNLDLSALSNLRTA 294
CR V DLS L N T+
Sbjct: 164 LCRNRVNIEDDLSVLGNSSTS 184
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ ++ GN++R LPC H FHI CID WL N CP CR V
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPVL 659
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 207 AAQREAVEALIQELPKFRLKAVPTDCSE--CPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
A R +A I++LP +R + C +C +F V +R LPC H FH +C+D+
Sbjct: 325 AKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDK 384
Query: 265 WLRLNVKCPRCR 276
WL+ N CP CR
Sbjct: 385 WLKANRTCPICR 396
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 207 AAQREAVEALIQELPKFRLKAVPTDCSE--CPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
A R +A I++LP +R + C +C +F V +R LPC H FH +C+D+
Sbjct: 268 AKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDK 327
Query: 265 WLRLNVKCPRCR 276
WL+ N CP CR
Sbjct: 328 WLKANRTCPICR 339
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRT 293
ECP+C E++ V EVR LPC H FH CI WL L+ CP CR S L+ + R
Sbjct: 227 ECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKS------LNGEDSTRQ 280
Query: 294 ADSERSSASS 303
+ S +SAS+
Sbjct: 281 SQSTEASASN 290
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
C +C+ ++ GN++R LPC H FHI CID WL N CP CR V
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVL 677
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKA-----VPTDCSEC 235
A +A Q G T ++ T + L+ ++PK ++ + C
Sbjct: 132 AMLSAVQSQMGAVDSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSC 191
Query: 236 PICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 276
+CL++F +G VR LP C H FH+ CID WL + CP CR
Sbjct: 192 SVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCR 233
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 214 EALIQELPKFRLKAVP--TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNV 270
+ALI LP F K + + +C +CL EF +++R LP C+H FHI+CID WL N
Sbjct: 121 QALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS 180
Query: 271 KCPRCRCSVF 280
CP CR ++F
Sbjct: 181 TCPLCRGTLF 190
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 209 QREAVEALIQELP----KFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
R+ + +I +LP K K + D C +C+E F V + +R LPC H FH CID
Sbjct: 235 HRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDP 294
Query: 265 WLRLNVKCPRCRCSVFPNL 283
WL + CP C+ V L
Sbjct: 295 WLLDHRTCPMCKLDVIKAL 313
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 192 IGQDTAAYHPGLYLTAAQ--REAVEA-LIQELPKFRLKAVPT-----DCSECPICLEEFH 243
+G D+ PG +L Q ++A +I+ P F V T + ECP+CL EF
Sbjct: 68 LGMDSGG-GPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFE 126
Query: 244 VGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFP 281
+R +P C H FH CID WLR CP CR ++ P
Sbjct: 127 DDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVP 165
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 233 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF--PNLDLSALS 289
S+C +CL ++ +++ +P C H FH+ECID WL + CP CR S+ P+LDLS S
Sbjct: 109 SQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQS 168
Query: 290 NLRTADSERSSASSVVTTTRYVRTQPSSQS 319
+ E S+ TQP SQS
Sbjct: 169 TEIVSSIENSNGGE-------ASTQPDSQS 191
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 227 AVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282
A+P + +EC ICL + E+R LPC H+FH C+D+WL +N CP C+ ++ +
Sbjct: 317 ALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKS 372
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 186 GQEMRGIGQDTAAYHPGLYLTA-AQREAVEALIQ-ELPKFRLKAVPTDCSECPICLEEFH 243
G + + Q A P Y T A + A++AL ++ K LK ++ ++C +C++EF
Sbjct: 168 GPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLK---SEMNQCAVCMDEFE 224
Query: 244 VGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276
G++V+ +PC H FH +C+ WL L+ CP CR
Sbjct: 225 DGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 207 AAQREAVEALIQELPKFRLKAVPTDCSE--CPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
A R +A I++LP +R + C +C +F +R LPC H FH +C+D+
Sbjct: 350 AKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDK 409
Query: 265 WLRLNVKCPRCRCSV 279
WL+ N CP CR
Sbjct: 410 WLKANRTCPICRADA 424
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 214 EALIQELPKFRLKA---------VPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECID 263
E+ I+ +P F+ K + EC +CL EF ++R +P C H FHI+CID
Sbjct: 104 ESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCID 163
Query: 264 EWLRLNVKCPRCRCSV 279
WL+ N CP CR SV
Sbjct: 164 IWLQGNANCPLCRTSV 179
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 215 ALIQELPKFRLKAVP--TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVK 271
++I+ LP FR A+ D EC +CL F +R LP C H FH+EC+D WL +
Sbjct: 124 SVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHST 183
Query: 272 CPRCRCSVFP 281
CP CR V P
Sbjct: 184 CPLCRYRVDP 193
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 214 EALIQELPKFRL---KAVPTDCSE--CPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR 267
E+ I+ K L + +PT ++ CPICL E+ VR LP C H FH ECID WL+
Sbjct: 301 ESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLK 360
Query: 268 LNVKCPRCRCSVFPNLD 284
L+ CP CR + P D
Sbjct: 361 LHSSCPVCRSNPSPLRD 377
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 217 IQELPKFRLKAVPTDCS--ECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCP 273
I+ LP FR A+ +C +CL +F +R LP C H FHI CID+WL + CP
Sbjct: 103 IESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCP 162
Query: 274 RCRCSVFPNLDLSALSN 290
CR V D S L+N
Sbjct: 163 LCRDRVSMEEDSSVLTN 179
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 205 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
L A ++A+ L K K D C +C+E + + VR LPC H FH C+D
Sbjct: 234 LGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDP 293
Query: 265 WLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVRTQP-SSQSYLVR 323
WL + CP C+ ++ L + + NL D + R RTQ + +S L
Sbjct: 294 WLSEHCTCPMCKLNILKALGI--VPNLPCTD------NVAFDMERLTRTQAVNRRSALGD 345
Query: 324 MQGL----LSPVHM-GNTRLPNDTDIALQTVE 350
+ G L P+ G + LP D ++ +T E
Sbjct: 346 LAGDNSLGLEPLRTSGISPLPQDGELTPRTGE 377
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 234 ECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR 292
EC ICL +F G ++R LP C H FH+ CID+WL+ ++ CP+CR + L +
Sbjct: 134 ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQ-KILGDFS 192
Query: 293 TADSERSSASSVVTTT 308
ADS + + +V T
Sbjct: 193 QADSVTAEPTEIVIVT 208
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRT 293
ECP+C E++ V +VR LPC H FH CI WL L+ CP CR S L+ + R
Sbjct: 228 ECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKS------LNGEDSTRQ 281
Query: 294 ADSERSSASS 303
S +SAS+
Sbjct: 282 TQSSEASASN 291
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 205 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
L A ++A+ L K K D C +C+E + + VR LPC H FH C+D
Sbjct: 234 LGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDP 293
Query: 265 WLRLNVKCPRCRCSVFPNLDLSALSNLRTADS 296
WL + CP C+ ++ L + + NL D+
Sbjct: 294 WLSEHCTCPMCKLNILKALGI--VPNLPCTDN 323
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 205 LTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
L A ++A+ L K K D C +C+E + + VR LPC H FH C+D
Sbjct: 234 LGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDP 293
Query: 265 WLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVRTQPSSQSYLVRM 324
WL + CP C+ ++ L + + NL D + R RTQ ++
Sbjct: 294 WLSEHCTCPMCKLNILKALGI--VPNLPCTD------NVAFDMERLTRTQAVNRRSA--- 342
Query: 325 QGLLSPVHMGNTRLPNDTDIALQTVENGGVLSATQN 360
+G+ L ND+ + L+ + G+ Q+
Sbjct: 343 --------LGD--LANDSSLGLEPLRTSGISPLPQD 368
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 206 TAAQREAVEALIQ-ELPKFRLKA--------------VPTDCSECPICLEEFHVGNEVRG 250
+ R AV+AL + E KF+ K + S+C ICLE++ G E+R
Sbjct: 158 NSMNRMAVQALEKMETRKFKAKGKVSREGSCGGLDTLSSSSISDCAICLEKYIDGEELRV 217
Query: 251 LPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
+PC H FH C+D WL N CP CR ++
Sbjct: 218 IPCTHRFHKRCVDPWLLQNHTCPHCRHNII 247
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 200 HPGLYLTAAQREAVEALIQELPK--FRLKAVPTD-CSECPICLEEFHVGNEVRGLP-CAH 255
HP + AA + + +++ LPK + + P + EC ICL EF G+E+R LP C H
Sbjct: 67 HPP-PVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGH 125
Query: 256 NFHIECIDEWLRLNVKCPRCR 276
FH+ CID WL + CP CR
Sbjct: 126 GFHVSCIDTWLGSHSSCPSCR 146
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 233 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL 291
S+C +CL ++ ++++ +P C H FH++CID WL + CP CR ++ P+
Sbjct: 98 SQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPS--------- 148
Query: 292 RTADSERSSASSVVTTTRYVRTQPSSQSY---LVRMQGLLSPV-HMGNTRLPNDTDIALQ 347
R+ S+ S+V+ V +QP S+ +V Q PV H G + P +
Sbjct: 149 RSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPV--- 205
Query: 348 TVENGGVLSATQNR 361
V + GV S +++
Sbjct: 206 -VNHRGVSSQPESQ 218
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Query: 206 TAAQREAVEALIQ-ELPKFRLKA-VPTDCS-------------ECPICLEEFHVGNEVRG 250
+ R AV+AL + E KF+ K VP + S +C ICLE++ G E+R
Sbjct: 222 NSMNRMAVQALEKMETRKFKAKGKVPREGSCGGLDTLSSSSTSDCAICLEKYIDGEELRV 281
Query: 251 LPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280
+PC H FH C+D WL N CP CR ++
Sbjct: 282 IPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 215 ALIQELPKFRLKAVPT-----DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRL 268
++I+ P F+ V T + EC +CL EF +R +P C H FH CID WLR
Sbjct: 119 SIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRS 178
Query: 269 NVKCPRCRCSVFP 281
+ CP CR + P
Sbjct: 179 HTTCPLCRADLIP 191
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 235 CPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCS 278
CPICL E+ VR +P C H FH++CIDEWL+++ CP CR S
Sbjct: 253 CPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 216 LIQELPKF--RLKAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKC 272
+++++P F +K + EC +CL EF +E R LP C H FH++CID W R C
Sbjct: 92 VLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSC 151
Query: 273 PRCRCSVFP 281
P CR V P
Sbjct: 152 PLCRAPVQP 160
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 207 AAQREAVEALIQELPKFR--LKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE 264
A R +A I++LP +R L+ ++ + C +C +F +R LPC H FH +C+D+
Sbjct: 366 AKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDK 425
Query: 265 WLRLNVKCPRCR 276
WL+ N CP CR
Sbjct: 426 WLKTNRTCPICR 437
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 217 IQELPKFR-LKAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPR 274
++ LP +R KA +C ICL +F G V+ +P C H FH++C+D WL V CP
Sbjct: 121 VRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPL 180
Query: 275 CRCS-VFPNLDL 285
CR + +F + DL
Sbjct: 181 CRSNQLFSDKDL 192
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 234 ECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 276
EC ICL +F G ++R LP C H FH+ CID+WL+ ++ CP+CR
Sbjct: 135 ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,972,211
Number of Sequences: 539616
Number of extensions: 5673373
Number of successful extensions: 15797
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 15327
Number of HSP's gapped (non-prelim): 537
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)