Query 016747
Match_columns 383
No_of_seqs 393 out of 2097
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1734 Predicted RING-contain 99.9 5.4E-27 1.2E-31 213.8 4.0 201 16-282 57-283 (328)
2 KOG4628 Predicted E3 ubiquitin 99.6 2.8E-15 6.1E-20 144.8 11.7 74 210-283 205-281 (348)
3 COG5243 HRD1 HRD ubiquitin lig 99.6 7.6E-15 1.6E-19 139.9 11.5 70 210-279 265-344 (491)
4 PF13639 zf-RING_2: Ring finge 99.4 8.5E-14 1.8E-18 96.0 1.8 44 233-276 1-44 (44)
5 KOG0823 Predicted E3 ubiquitin 99.1 1.4E-10 2.9E-15 105.5 6.6 60 230-292 45-107 (230)
6 PF12678 zf-rbx1: RING-H2 zinc 99.1 9.1E-11 2E-15 89.8 3.9 45 232-276 19-73 (73)
7 COG5540 RING-finger-containing 99.1 7.6E-11 1.7E-15 110.2 3.4 50 232-281 323-373 (374)
8 PHA02929 N1R/p28-like protein; 99.1 1.1E-10 2.4E-15 108.4 4.5 68 213-280 151-227 (238)
9 PLN03208 E3 ubiquitin-protein 99.1 2.7E-10 6E-15 101.7 6.6 53 231-286 17-85 (193)
10 KOG0317 Predicted E3 ubiquitin 99.0 9.7E-11 2.1E-15 109.4 3.2 53 228-283 235-287 (293)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 6.6E-10 1.4E-14 78.6 3.1 46 232-280 2-48 (50)
12 KOG0802 E3 ubiquitin ligase [P 98.9 1.3E-09 2.9E-14 113.9 5.4 64 218-281 275-342 (543)
13 PF15227 zf-C3HC4_4: zinc fing 98.8 2E-09 4.3E-14 73.3 3.1 38 235-275 1-42 (42)
14 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.8E-09 3.9E-14 72.3 2.6 38 235-275 1-39 (39)
15 KOG0320 Predicted E3 ubiquitin 98.7 5E-09 1.1E-13 91.5 2.9 52 230-282 129-180 (187)
16 cd00162 RING RING-finger (Real 98.7 8.9E-09 1.9E-13 70.0 3.3 44 234-279 1-45 (45)
17 PF14634 zf-RING_5: zinc-RING 98.7 1.8E-08 3.8E-13 69.4 3.1 44 234-277 1-44 (44)
18 smart00504 Ubox Modified RING 98.7 2.2E-08 4.8E-13 74.0 3.7 46 233-281 2-47 (63)
19 PF00097 zf-C3HC4: Zinc finger 98.6 2.1E-08 4.5E-13 67.7 2.7 38 235-275 1-41 (41)
20 PF12861 zf-Apc11: Anaphase-pr 98.6 3.1E-08 6.8E-13 76.9 3.3 48 232-279 21-81 (85)
21 PHA02926 zinc finger-like prot 98.6 3.2E-08 6.9E-13 89.6 3.0 50 231-280 169-230 (242)
22 smart00184 RING Ring finger. E 98.5 6.2E-08 1.3E-12 63.5 3.0 38 235-275 1-39 (39)
23 COG5574 PEX10 RING-finger-cont 98.5 5.4E-08 1.2E-12 90.1 2.7 52 230-284 213-266 (271)
24 TIGR00599 rad18 DNA repair pro 98.5 6.4E-08 1.4E-12 96.3 3.4 48 231-281 25-72 (397)
25 KOG0828 Predicted E3 ubiquitin 98.4 7.6E-07 1.6E-11 88.6 8.7 52 230-281 569-635 (636)
26 PF13445 zf-RING_UBOX: RING-ty 98.3 3.6E-07 7.8E-12 62.3 2.3 34 235-269 1-35 (43)
27 KOG2164 Predicted E3 ubiquitin 98.2 6.2E-07 1.3E-11 90.1 2.7 48 232-282 186-238 (513)
28 PF04564 U-box: U-box domain; 98.2 1.1E-06 2.4E-11 67.2 2.9 47 232-281 4-51 (73)
29 KOG0287 Postreplication repair 98.2 5.2E-07 1.1E-11 86.0 1.3 46 233-281 24-69 (442)
30 COG5194 APC11 Component of SCF 98.2 1.5E-06 3.3E-11 65.9 3.1 47 234-280 33-81 (88)
31 KOG4265 Predicted E3 ubiquitin 98.1 1.2E-06 2.7E-11 84.6 3.0 50 231-283 289-339 (349)
32 COG5432 RAD18 RING-finger-cont 98.1 1.3E-06 2.7E-11 81.8 2.2 44 233-279 26-69 (391)
33 TIGR00570 cdk7 CDK-activating 98.0 4.7E-06 1E-10 80.0 3.7 51 232-282 3-56 (309)
34 smart00744 RINGv The RING-vari 97.9 7.9E-06 1.7E-10 57.5 3.1 42 234-276 1-49 (49)
35 KOG1493 Anaphase-promoting com 97.9 1.9E-06 4.1E-11 64.8 -0.2 47 233-279 21-80 (84)
36 KOG0824 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 78.4 2.4 48 233-283 8-56 (324)
37 KOG4172 Predicted E3 ubiquitin 97.9 2.3E-06 5E-11 60.2 0.0 45 233-280 8-54 (62)
38 KOG2177 Predicted E3 ubiquitin 97.9 4.7E-06 1E-10 79.2 1.5 44 231-277 12-55 (386)
39 PF11793 FANCL_C: FANCL C-term 97.8 4.8E-06 1E-10 63.1 0.2 48 233-280 3-66 (70)
40 COG5219 Uncharacterized conser 97.8 5.6E-06 1.2E-10 87.9 0.2 51 230-280 1467-1523(1525)
41 KOG0311 Predicted E3 ubiquitin 97.8 3.4E-06 7.3E-11 81.2 -1.4 51 232-285 43-95 (381)
42 KOG1785 Tyrosine kinase negati 97.6 0.00012 2.5E-09 71.6 6.9 45 234-281 371-417 (563)
43 PF14835 zf-RING_6: zf-RING of 97.6 1.6E-05 3.4E-10 58.4 0.6 43 233-280 8-51 (65)
44 KOG0827 Predicted E3 ubiquitin 97.6 2.1E-05 4.5E-10 76.5 1.5 47 233-279 5-55 (465)
45 KOG2930 SCF ubiquitin ligase, 97.6 3.5E-05 7.7E-10 61.4 1.9 49 231-279 45-107 (114)
46 KOG0978 E3 ubiquitin ligase in 97.5 3.5E-05 7.6E-10 81.2 1.0 48 233-283 644-692 (698)
47 KOG0804 Cytoplasmic Zn-finger 97.4 4.6E-05 1E-09 75.5 1.3 47 232-280 175-222 (493)
48 KOG4159 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 73.1 2.8 49 230-281 82-130 (398)
49 KOG1645 RING-finger-containing 97.1 0.00036 7.7E-09 68.6 3.0 49 231-279 3-55 (463)
50 KOG1039 Predicted E3 ubiquitin 97.1 0.00027 5.9E-09 69.3 2.2 49 231-279 160-220 (344)
51 KOG0825 PHD Zn-finger protein 97.0 0.00014 3.1E-09 76.3 -0.5 47 233-279 124-170 (1134)
52 KOG1571 Predicted E3 ubiquitin 96.8 0.00011 2.5E-09 71.2 -2.6 43 232-280 305-347 (355)
53 COG5152 Uncharacterized conser 96.8 0.00052 1.1E-08 61.2 1.8 44 233-279 197-240 (259)
54 KOG1941 Acetylcholine receptor 96.8 0.00049 1.1E-08 67.3 1.4 46 232-277 365-413 (518)
55 KOG0297 TNF receptor-associate 96.8 0.00087 1.9E-08 67.5 2.8 51 230-283 19-70 (391)
56 KOG2879 Predicted E3 ubiquitin 96.7 0.0013 2.8E-08 61.7 3.6 49 230-281 237-288 (298)
57 KOG4445 Uncharacterized conser 96.7 0.00051 1.1E-08 65.0 0.7 50 231-280 114-186 (368)
58 KOG4692 Predicted E3 ubiquitin 96.7 0.0013 2.9E-08 63.5 3.5 72 207-281 392-468 (489)
59 KOG3970 Predicted E3 ubiquitin 96.5 0.006 1.3E-07 55.6 6.2 52 233-285 51-110 (299)
60 KOG1813 Predicted E3 ubiquitin 96.5 0.0011 2.5E-08 62.7 1.7 46 232-280 241-286 (313)
61 KOG4275 Predicted E3 ubiquitin 96.4 0.00082 1.8E-08 63.4 0.1 42 232-280 300-342 (350)
62 KOG2660 Locus-specific chromos 96.3 0.00071 1.5E-08 65.0 -0.8 46 232-279 15-60 (331)
63 PF11789 zf-Nse: Zinc-finger o 96.3 0.0023 5E-08 46.4 1.9 40 232-274 11-53 (57)
64 KOG1002 Nucleotide excision re 96.3 0.0017 3.7E-08 65.7 1.6 50 230-282 534-588 (791)
65 COG5236 Uncharacterized conser 95.9 0.0064 1.4E-07 58.7 3.4 51 226-279 55-107 (493)
66 KOG1428 Inhibitor of type V ad 95.9 0.0052 1.1E-07 68.5 2.7 50 231-280 3485-3544(3738)
67 KOG1814 Predicted E3 ubiquitin 95.7 0.0099 2.1E-07 58.8 3.7 45 233-277 185-237 (445)
68 PF14570 zf-RING_4: RING/Ubox 95.6 0.008 1.7E-07 41.8 1.9 43 235-278 1-46 (48)
69 COG5222 Uncharacterized conser 95.5 0.0094 2E-07 56.5 2.6 42 233-277 275-318 (427)
70 PHA02825 LAP/PHD finger-like p 95.2 0.022 4.8E-07 49.5 3.7 48 229-280 5-59 (162)
71 PF12906 RINGv: RING-variant d 95.1 0.018 4E-07 40.0 2.6 40 235-275 1-47 (47)
72 PF05883 Baculo_RING: Baculovi 95.1 0.0086 1.9E-07 50.7 1.0 44 233-276 27-76 (134)
73 PF14447 Prok-RING_4: Prokaryo 95.1 0.014 3.1E-07 41.6 1.8 45 233-282 8-52 (55)
74 PF10367 Vps39_2: Vacuolar sor 95.0 0.017 3.6E-07 46.9 2.4 32 231-263 77-108 (109)
75 KOG4739 Uncharacterized protei 94.9 0.01 2.2E-07 55.1 1.0 44 234-280 5-48 (233)
76 KOG0801 Predicted E3 ubiquitin 94.9 0.0094 2E-07 51.7 0.6 30 230-259 175-204 (205)
77 KOG2114 Vacuolar assembly/sort 94.8 0.019 4.1E-07 61.5 2.8 65 210-279 818-882 (933)
78 PHA02862 5L protein; Provision 94.8 0.021 4.5E-07 48.8 2.4 45 233-281 3-54 (156)
79 KOG4185 Predicted E3 ubiquitin 94.4 0.024 5.1E-07 54.9 2.3 47 233-279 4-54 (296)
80 KOG0826 Predicted E3 ubiquitin 94.2 0.031 6.8E-07 53.8 2.5 48 229-279 297-345 (357)
81 PF10272 Tmpp129: Putative tra 94.1 0.14 3.1E-06 50.7 7.0 75 207-281 246-352 (358)
82 KOG3039 Uncharacterized conser 93.7 0.064 1.4E-06 49.8 3.4 51 232-282 221-272 (303)
83 KOG1952 Transcription factor N 93.6 0.057 1.2E-06 58.0 3.4 48 230-277 189-244 (950)
84 PHA03096 p28-like protein; Pro 93.5 0.036 7.7E-07 53.4 1.6 45 233-277 179-231 (284)
85 KOG1100 Predicted E3 ubiquitin 92.9 0.05 1.1E-06 50.0 1.6 39 235-280 161-200 (207)
86 KOG3268 Predicted E3 ubiquitin 92.8 0.058 1.3E-06 47.6 1.8 49 233-281 166-229 (234)
87 PF07800 DUF1644: Protein of u 92.6 0.12 2.6E-06 45.0 3.3 33 232-267 2-47 (162)
88 KOG1001 Helicase-like transcri 92.3 0.05 1.1E-06 58.4 0.8 45 233-281 455-501 (674)
89 PF05290 Baculo_IE-1: Baculovi 92.1 0.18 4E-06 42.5 3.7 49 231-282 79-134 (140)
90 KOG2932 E3 ubiquitin ligase in 92.1 0.062 1.3E-06 51.4 1.0 43 233-279 91-133 (389)
91 PF08746 zf-RING-like: RING-li 91.8 0.088 1.9E-06 35.8 1.3 41 235-275 1-43 (43)
92 PF04641 Rtf2: Rtf2 RING-finge 91.6 0.22 4.9E-06 47.4 4.3 52 230-282 111-163 (260)
93 KOG2817 Predicted E3 ubiquitin 91.2 0.16 3.4E-06 50.4 2.8 46 233-278 335-383 (394)
94 KOG0827 Predicted E3 ubiquitin 91.0 0.015 3.3E-07 57.0 -4.4 50 233-282 197-247 (465)
95 KOG1940 Zn-finger protein [Gen 90.6 0.14 3.1E-06 48.8 1.8 45 233-277 159-204 (276)
96 KOG3002 Zn finger protein [Gen 90.2 0.16 3.5E-06 49.2 1.9 42 232-280 48-91 (299)
97 COG5175 MOT2 Transcriptional r 90.0 0.19 4.2E-06 48.6 2.2 48 233-280 15-64 (480)
98 KOG4367 Predicted Zn-finger pr 88.7 0.23 5.1E-06 49.6 1.7 35 230-267 2-36 (699)
99 COG5183 SSM4 Protein involved 86.8 0.47 1E-05 50.9 2.8 49 230-279 10-65 (1175)
100 KOG3800 Predicted E3 ubiquitin 86.2 0.52 1.1E-05 45.0 2.4 46 234-279 2-50 (300)
101 KOG0298 DEAD box-containing he 85.6 0.22 4.9E-06 55.9 -0.4 43 233-277 1154-1196(1394)
102 KOG0802 E3 ubiquitin ligase [P 85.4 0.43 9.3E-06 50.3 1.7 57 220-283 467-523 (543)
103 KOG2034 Vacuolar sorting prote 83.6 0.51 1.1E-05 51.3 1.3 36 230-266 815-850 (911)
104 KOG3161 Predicted E3 ubiquitin 83.2 0.4 8.6E-06 50.3 0.3 42 233-277 12-54 (861)
105 PF14446 Prok-RING_1: Prokaryo 82.6 1.1 2.4E-05 32.0 2.3 32 233-264 6-38 (54)
106 KOG4362 Transcriptional regula 82.4 0.34 7.5E-06 51.5 -0.5 45 233-280 22-69 (684)
107 KOG1812 Predicted E3 ubiquitin 81.0 1.1 2.3E-05 45.2 2.4 36 232-267 146-182 (384)
108 KOG0269 WD40 repeat-containing 79.7 1.4 3.1E-05 47.2 2.9 38 234-274 781-820 (839)
109 PF03854 zf-P11: P-11 zinc fin 79.0 0.68 1.5E-05 32.0 0.2 32 250-281 15-47 (50)
110 PF05297 Herpes_LMP1: Herpesvi 78.2 0.68 1.5E-05 44.1 0.0 8 272-279 234-241 (381)
111 KOG0309 Conserved WD40 repeat- 77.7 1.2 2.7E-05 47.6 1.7 26 249-274 1044-1069(1081)
112 PF04216 FdhE: Protein involve 76.7 1.4 3E-05 42.6 1.7 60 215-277 155-219 (290)
113 KOG1609 Protein involved in mR 75.1 1.6 3.5E-05 42.2 1.6 50 231-280 77-134 (323)
114 KOG3899 Uncharacterized conser 74.5 2.7 5.9E-05 40.2 2.9 28 253-280 325-365 (381)
115 KOG3053 Uncharacterized conser 74.4 1.5 3.1E-05 41.3 1.1 50 230-279 18-81 (293)
116 COG5220 TFB3 Cdk activating ki 73.3 1.8 3.8E-05 40.3 1.3 45 233-277 11-61 (314)
117 KOG0825 PHD Zn-finger protein 73.1 2 4.4E-05 46.2 1.8 48 232-279 96-153 (1134)
118 COG5109 Uncharacterized conser 70.7 2.6 5.7E-05 40.7 1.9 44 233-276 337-383 (396)
119 KOG1829 Uncharacterized conser 68.6 1.7 3.6E-05 45.8 0.1 41 233-276 512-557 (580)
120 PF12273 RCR: Chitin synthesis 64.7 3.2 6.9E-05 35.1 1.1 7 123-129 1-7 (130)
121 PF02891 zf-MIZ: MIZ/SP-RING z 64.7 6.8 0.00015 27.4 2.6 42 233-278 3-50 (50)
122 KOG3579 Predicted E3 ubiquitin 63.6 3.4 7.4E-05 39.4 1.1 33 233-268 269-305 (352)
123 KOG1815 Predicted E3 ubiquitin 60.4 4.9 0.00011 41.3 1.7 35 231-267 69-103 (444)
124 KOG4718 Non-SMC (structural ma 59.3 4.6 0.0001 36.9 1.1 42 233-276 182-223 (235)
125 KOG0824 Predicted E3 ubiquitin 57.3 23 0.00049 34.3 5.4 50 230-282 103-153 (324)
126 KOG1812 Predicted E3 ubiquitin 56.3 5.6 0.00012 40.1 1.3 43 233-275 307-351 (384)
127 PF12273 RCR: Chitin synthesis 55.7 12 0.00026 31.5 3.1 8 129-136 2-9 (130)
128 TIGR01562 FdhE formate dehydro 54.8 6.8 0.00015 38.2 1.5 61 216-277 168-232 (305)
129 KOG2068 MOT2 transcription fac 53.3 12 0.00026 36.6 3.0 48 233-280 250-298 (327)
130 KOG2807 RNA polymerase II tran 53.1 19 0.00042 35.1 4.2 65 213-277 307-375 (378)
131 PF10571 UPF0547: Uncharacteri 52.9 7.2 0.00016 23.5 0.9 22 234-257 2-24 (26)
132 PF13901 DUF4206: Domain of un 52.8 9.7 0.00021 34.8 2.1 40 232-276 152-196 (202)
133 PRK03564 formate dehydrogenase 52.6 9.9 0.00021 37.1 2.3 45 231-277 186-234 (309)
134 KOG2066 Vacuolar assembly/sort 52.6 6.1 0.00013 42.8 0.9 44 232-276 784-831 (846)
135 KOG3817 Uncharacterized conser 51.5 70 0.0015 31.9 7.8 45 8-54 162-206 (452)
136 PF07975 C1_4: TFIIH C1-like d 50.5 12 0.00027 26.4 1.9 42 235-276 2-50 (51)
137 KOG3039 Uncharacterized conser 49.6 12 0.00026 35.2 2.1 32 233-267 44-75 (303)
138 smart00249 PHD PHD zinc finger 49.1 9.6 0.00021 25.0 1.2 31 234-264 1-31 (47)
139 PF14569 zf-UDP: Zinc-binding 46.9 22 0.00047 27.4 2.8 51 233-283 10-65 (80)
140 KOG2113 Predicted RNA binding 46.0 16 0.00036 35.4 2.6 42 233-279 344-386 (394)
141 PF07191 zinc-ribbons_6: zinc- 45.6 2.9 6.2E-05 31.5 -2.0 39 233-279 2-40 (70)
142 PF05568 ASFV_J13L: African sw 45.2 33 0.00072 29.6 4.0 41 114-155 15-58 (189)
143 PF01363 FYVE: FYVE zinc finge 44.7 11 0.00025 27.7 1.1 34 232-265 9-43 (69)
144 KOG3005 GIY-YIG type nuclease 44.2 11 0.00024 35.7 1.2 47 233-279 183-242 (276)
145 PF06844 DUF1244: Protein of u 44.0 12 0.00026 27.8 1.0 12 256-267 11-22 (68)
146 PLN02189 cellulose synthase 43.8 28 0.00061 39.3 4.3 51 233-283 35-90 (1040)
147 KOG2927 Membrane component of 42.5 17 0.00038 35.8 2.2 20 92-111 237-259 (372)
148 KOG3799 Rab3 effector RIM1 and 42.0 9 0.00019 32.5 0.2 12 230-241 63-74 (169)
149 KOG3113 Uncharacterized conser 41.3 23 0.00051 33.4 2.7 49 232-282 111-160 (293)
150 PF06906 DUF1272: Protein of u 40.6 45 0.00097 24.0 3.4 45 233-280 6-52 (57)
151 PLN02436 cellulose synthase A 40.1 35 0.00075 38.7 4.3 51 233-283 37-92 (1094)
152 smart00132 LIM Zinc-binding do 40.0 31 0.00067 21.5 2.5 37 234-279 1-37 (39)
153 PLN02400 cellulose synthase 39.7 1.4E+02 0.003 34.2 8.8 51 233-283 37-92 (1085)
154 PF04710 Pellino: Pellino; In 39.3 9.9 0.00021 38.1 0.0 28 251-278 307-337 (416)
155 TIGR00622 ssl1 transcription f 37.2 52 0.0011 27.2 3.9 44 233-276 56-110 (112)
156 KOG4812 Golgi-associated prote 37.1 82 0.0018 29.6 5.5 38 112-152 212-249 (262)
157 PF02318 FYVE_2: FYVE-type zin 35.9 28 0.00061 28.8 2.2 45 231-277 53-102 (118)
158 PLN02638 cellulose synthase A 35.7 44 0.00095 38.0 4.2 51 233-283 18-73 (1079)
159 cd00065 FYVE FYVE domain; Zinc 33.4 30 0.00064 24.2 1.7 33 233-265 3-36 (57)
160 PF13719 zinc_ribbon_5: zinc-r 31.9 26 0.00056 22.8 1.1 14 234-247 4-17 (37)
161 smart00064 FYVE Protein presen 31.4 37 0.00081 24.8 2.1 34 233-266 11-45 (68)
162 PF00412 LIM: LIM domain; Int 31.1 36 0.00077 23.7 1.8 39 235-282 1-39 (58)
163 PF00628 PHD: PHD-finger; Int 30.9 31 0.00067 23.6 1.4 43 234-276 1-49 (51)
164 PRK10582 cytochrome o ubiquino 30.5 10 0.00023 31.2 -1.2 47 11-60 19-66 (109)
165 PF13717 zinc_ribbon_4: zinc-r 29.6 27 0.00059 22.6 0.9 14 234-247 4-17 (36)
166 KOG4185 Predicted E3 ubiquitin 29.6 10 0.00022 36.5 -1.7 46 233-278 208-265 (296)
167 PF08114 PMP1_2: ATPase proteo 29.5 40 0.00087 22.6 1.6 26 127-152 12-37 (43)
168 PF01102 Glycophorin_A: Glycop 28.7 54 0.0012 27.6 2.7 7 130-136 73-79 (122)
169 PLN02915 cellulose synthase A 28.3 69 0.0015 36.3 4.2 51 232-282 15-70 (1044)
170 KOG2846 Predicted membrane pro 28.1 1.4E+02 0.003 29.4 5.7 33 250-283 220-256 (328)
171 KOG3842 Adaptor protein Pellin 27.9 52 0.0011 32.1 2.8 51 232-282 341-416 (429)
172 KOG3842 Adaptor protein Pellin 27.6 44 0.00096 32.6 2.3 40 233-277 291-349 (429)
173 cd00350 rubredoxin_like Rubred 27.0 41 0.00089 21.2 1.4 10 268-277 16-25 (33)
174 PF15091 DUF4554: Domain of un 27.0 21 0.00045 35.6 -0.0 14 26-39 157-170 (458)
175 PF03839 Sec62: Translocation 25.2 39 0.00084 31.5 1.4 19 93-111 159-180 (224)
176 KOG2071 mRNA cleavage and poly 24.7 42 0.00092 35.4 1.7 36 230-265 511-556 (579)
177 PLN02195 cellulose synthase A 24.7 82 0.0018 35.5 4.0 49 232-280 6-59 (977)
178 PF05297 Herpes_LMP1: Herpesvi 24.4 25 0.00054 33.8 0.0 8 175-182 118-125 (381)
179 PRK12495 hypothetical protein; 23.8 3.3E+02 0.0072 25.3 7.1 11 271-281 60-70 (226)
180 PF10146 zf-C4H2: Zinc finger- 23.6 47 0.001 31.1 1.6 24 257-280 196-219 (230)
181 PF09723 Zn-ribbon_8: Zinc rib 23.5 25 0.00055 23.5 -0.1 26 251-277 9-34 (42)
182 PF14311 DUF4379: Domain of un 23.5 50 0.0011 23.2 1.4 9 267-275 47-55 (55)
183 KOG0499 Cyclic nucleotide-gate 23.1 60 0.0013 34.6 2.4 38 21-58 232-278 (815)
184 KOG2231 Predicted E3 ubiquitin 23.0 55 0.0012 35.4 2.2 44 234-280 2-52 (669)
185 KOG4451 Uncharacterized conser 22.7 46 0.00099 31.0 1.3 24 257-280 251-274 (286)
186 TIGR03141 cytochro_ccmD heme e 22.0 1.1E+02 0.0024 20.7 2.9 21 124-144 4-24 (45)
187 PF01102 Glycophorin_A: Glycop 21.9 1.1E+02 0.0024 25.6 3.4 27 127-154 66-92 (122)
188 PF05624 LSR: Lipolysis stimul 21.6 79 0.0017 21.8 2.0 20 124-143 2-21 (49)
189 smart00647 IBR In Between Ring 20.8 24 0.00052 25.1 -0.7 18 248-265 40-58 (64)
190 KOG2927 Membrane component of 20.8 1.6E+02 0.0034 29.3 4.6 32 80-111 191-222 (372)
191 PF09889 DUF2116: Uncharacteri 20.7 59 0.0013 23.7 1.3 15 268-282 2-16 (59)
192 PF10083 DUF2321: Uncharacteri 20.6 51 0.0011 28.8 1.1 45 236-283 8-53 (158)
193 COG3492 Uncharacterized protei 20.2 45 0.00097 26.4 0.6 12 256-267 42-53 (104)
No 1
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.4e-27 Score=213.78 Aligned_cols=201 Identities=21% Similarity=0.391 Sum_probs=162.0
Q ss_pred HHHHHHHHH--HhhhcccccccCCCc----eeeeehhhHHHHHHHHHHHhhhcccccccCCccchhhccccchhhHHHHH
Q 016747 16 LSMLATSVI--IVAINWKRYHLCTYP----LHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLS 89 (383)
Q Consensus 16 ~~~~~~~~~--~~~~~w~~~~~c~~p----~~~W~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (383)
++++++.|+ +++++||+.|..+|. ++||.++.|+++... +.||..-|++.+
T Consensus 57 ~I~~i~lvIaQi~lv~WKkrh~RSy~~~tll~m~~iPlyf~~~~~-----------------------w~rfl~~WlmF~ 113 (328)
T KOG1734|consen 57 AIFSIYLVIAQIFLVVWKKRHKRSYDVCTLLIMLFIPLYFFLYMQ-----------------------WYRFLFCWLMFC 113 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhhhHH-----------------------HHHHHHHHHHHH
Confidence 455666666 888999999999999 899999999888775 667888888877
Q ss_pred H-HHHhhhcceeeeEEEEEEEEeecCCCCCCCCCc----hhhhHH------HHHHHHHHHHHHHHHhhhhccccchhhhh
Q 016747 90 I-LSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQK----WGFLIW------LLFSYCGLLCIACMSMGKWLTRRQAHSIR 158 (383)
Q Consensus 90 ~-l~~~l~~f~~~w~i~G~~~~~~~~~~lp~~~~~----w~~~i~------li~~~~~ll~i~~~~~~~~~~rr~~~~~~ 158 (383)
. ++++.+ +++++++..++|| ||+++| +++||+++++..+.+...+... ...-
T Consensus 114 ~~tafi~~--------------ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~F~~~---~~~~ 176 (328)
T KOG1734|consen 114 GFTAFITL--------------KALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFTFFYL---KTTY 176 (328)
T ss_pred HHHHHHHH--------------HHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeEEeec---chhH
Confidence 5 666666 8999999999997 887777 3444444454445444444444 4444
Q ss_pred hhcCCcccccccchhcccchhhHHHhhchhhhcCCccccccCCCCCCcHHHHHHHHHHHHhcCccccccCCCCCCccccc
Q 016747 159 AQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPIC 238 (383)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~C~IC 238 (383)
.+.|+.+.+||+ |++.+++|+.++++|.++...|.|.+ +.+|+...++ +.|+||
T Consensus 177 md~gi~~lfygl----------YyGvlgRdfa~icsd~mAs~iGfYs~-----------~glPtkhl~d-----~vCaVC 230 (328)
T KOG1734|consen 177 MDFGISFLFYGL----------YYGVLGRDFAEICSDYMASTIGFYSP-----------SGLPTKHLSD-----SVCAVC 230 (328)
T ss_pred hhhhHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHhcccCC-----------CCCCCCCCCc-----chhHhh
Confidence 558899999998 99999999999999999999999987 8889888765 899999
Q ss_pred cccccCCC-------ceeeeCCCCccchhhHHHHH--hcCCCCcccCCCCCCC
Q 016747 239 LEEFHVGN-------EVRGLPCAHNFHIECIDEWL--RLNVKCPRCRCSVFPN 282 (383)
Q Consensus 239 ~~~~~~~~-------~~~~lpC~H~Fh~~Ci~~wl--~~~~~CP~CR~~v~~~ 282 (383)
...+.... +..+|.|+|+||+.||+.|- .++++||.|++++..+
T Consensus 231 g~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 231 GQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred cchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 99886554 67889999999999999994 4889999999988544
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.8e-15 Score=144.81 Aligned_cols=74 Identities=32% Similarity=0.822 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCccccccCCCCC--CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCC-CcccCCCCCCCC
Q 016747 210 REAVEALIQELPKFRLKAVPTDC--SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVK-CPRCRCSVFPNL 283 (383)
Q Consensus 210 ~~~~~~~~~~lp~~~~~~~~~~~--~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~-CP~CR~~v~~~~ 283 (383)
++..+++.+++|..++....+.+ ..|+||+|+|+.||..+.|||+|.||..||++||.++.+ ||+||+++....
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 34556677888888877655432 489999999999999999999999999999999997755 999999886553
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.6e-15 Score=139.94 Aligned_cols=70 Identities=31% Similarity=0.732 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCccccccCCCCCCccccccccc-cCC---------CceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 210 REAVEALIQELPKFRLKAVPTDCSECPICLEEF-HVG---------NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 210 ~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~-~~~---------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
+.+.+.+.+-+|....++...++..|.||++++ +.+ .+|++|||||.+|.+|++.|++++++||+||.++
T Consensus 265 ~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 265 RRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred HHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 556667778888888888888889999999994 433 2578999999999999999999999999999995
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.40 E-value=8.5e-14 Score=96.01 Aligned_cols=44 Identities=61% Similarity=1.323 Sum_probs=40.3
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
++|+||++.+..++.+..++|||.||.+|+.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998888999999999999999999999999999997
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-10 Score=105.46 Aligned_cols=60 Identities=23% Similarity=0.513 Sum_probs=48.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh---cCCCCcccCCCCCCCCccccccccc
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRCRCSVFPNLDLSALSNLR 292 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~~v~~~~~~~~~~~~~ 292 (383)
....+|.||++.-+ +++++.|||.||+.||.+|++ ..+.||+||..|..+...+......
T Consensus 45 ~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 44579999999988 899999999999999999998 3345999999997776555554443
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.08 E-value=9.1e-11 Score=89.82 Aligned_cols=45 Identities=40% Similarity=0.916 Sum_probs=35.6
Q ss_pred CCccccccccccCC----------CceeeeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 232 CSECPICLEEFHVG----------NEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 232 ~~~C~IC~~~~~~~----------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
++.|+||++.+... -.+...+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35699999999322 1234557999999999999999999999998
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.6e-11 Score=110.22 Aligned_cols=50 Identities=44% Similarity=1.097 Sum_probs=45.9
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~ 281 (383)
+-+|+||++++..+|..+.+||.|.||..|+++|+. -+..||+||.+++|
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 368999999999899999999999999999999988 66789999999875
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=1.1e-10 Score=108.39 Aligned_cols=68 Identities=28% Similarity=0.567 Sum_probs=49.4
Q ss_pred HHHHHHhcCccccccC----CCCCCccccccccccCCCc-----eeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 213 VEALIQELPKFRLKAV----PTDCSECPICLEEFHVGNE-----VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 213 ~~~~~~~lp~~~~~~~----~~~~~~C~IC~~~~~~~~~-----~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
.+++++.+|....+.. ..++.+|+||++.+..++. ...++|+|.||..||.+|+..+.+||+||.++.
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4455666666643221 1335799999998764321 244579999999999999999999999998774
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.06 E-value=2.7e-10 Score=101.73 Aligned_cols=53 Identities=28% Similarity=0.620 Sum_probs=43.5
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhc----------------CCCCcccCCCCCCCCccc
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL----------------NVKCPRCRCSVFPNLDLS 286 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----------------~~~CP~CR~~v~~~~~~~ 286 (383)
++.+|+||++.++ +++.++|||.||..||.+|+.. ...||+||.++....-.+
T Consensus 17 ~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 17 GDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3478999999988 7888999999999999999852 246999999996654333
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.7e-11 Score=109.40 Aligned_cols=53 Identities=34% Similarity=0.805 Sum_probs=47.0
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCCC
Q 016747 228 VPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 228 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~~ 283 (383)
..+....|.+|++..+ .+..+||||+||..||.+|...+..||+||.++.+.+
T Consensus 235 i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 3455578999999998 8999999999999999999999889999999987654
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.93 E-value=6.6e-10 Score=78.64 Aligned_cols=46 Identities=43% Similarity=0.879 Sum_probs=40.4
Q ss_pred CCccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
+..|.||++... ....+||||. ||..|+.+|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 368999999987 7899999999 999999999999999999999874
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.3e-09 Score=113.87 Aligned_cols=64 Identities=36% Similarity=0.849 Sum_probs=50.3
Q ss_pred HhcCcccccc--CCCCCCccccccccccCCCc--eeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 218 QELPKFRLKA--VPTDCSECPICLEEFHVGNE--VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 218 ~~lp~~~~~~--~~~~~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..++....+. ....++.|+||+|.+..+.+ ++++||+|.||..|+++|+++.++||.||..+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 275 TGLPGATLEERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred ccccccChHHhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 3444444443 33446899999999995544 8999999999999999999999999999995543
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=2e-09 Score=73.29 Aligned_cols=38 Identities=39% Similarity=1.100 Sum_probs=30.5
Q ss_pred cccccccccCCCceeeeCCCCccchhhHHHHHhcC----CCCccc
Q 016747 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRC 275 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~C 275 (383)
|+||++.+. +|+.|+|||.||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 99999999999999999999843 359987
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.84 E-value=1.8e-09 Score=72.34 Aligned_cols=38 Identities=50% Similarity=1.184 Sum_probs=33.0
Q ss_pred cccccccccCCCce-eeeCCCCccchhhHHHHHhcCCCCccc
Q 016747 235 CPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLNVKCPRC 275 (383)
Q Consensus 235 C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~C 275 (383)
|+||++.+. ++ ..++|||.||.+|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~---~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR---DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S---SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc---CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999998 56 678999999999999999998899998
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5e-09 Score=91.48 Aligned_cols=52 Identities=31% Similarity=0.684 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+....|+||++.+.. ..+..+.|||+||..||+.-++....||+||++|..+
T Consensus 129 ~~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 445789999999972 1234578999999999999999999999999987543
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=8.9e-09 Score=69.99 Aligned_cols=44 Identities=55% Similarity=1.213 Sum_probs=35.8
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 279 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v 279 (383)
+|+||++.+. +.....+|||.||..|++.|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999984 23444459999999999999986 77799999753
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.66 E-value=1.8e-08 Score=69.37 Aligned_cols=44 Identities=34% Similarity=0.764 Sum_probs=38.5
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
.|.||.+.+.....+..++|||.||..|+.........||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965667889999999999999998866678999984
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.65 E-value=2.2e-08 Score=73.97 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=41.7
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+||.+.+. ++..++|||+|+..||.+|+..+.+||+|+.++..
T Consensus 2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 57999999998 78889999999999999999988899999988743
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=2.1e-08 Score=67.74 Aligned_cols=38 Identities=53% Similarity=1.274 Sum_probs=33.6
Q ss_pred cccccccccCCCcee-eeCCCCccchhhHHHHHh--cCCCCccc
Q 016747 235 CPICLEEFHVGNEVR-GLPCAHNFHIECIDEWLR--LNVKCPRC 275 (383)
Q Consensus 235 C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~wl~--~~~~CP~C 275 (383)
|+||++.+. .+. .++|||.||..|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~---~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE---DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS---SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc---CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999998 555 889999999999999998 56679988
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.60 E-value=3.1e-08 Score=76.91 Aligned_cols=48 Identities=38% Similarity=0.825 Sum_probs=36.8
Q ss_pred CCccccccccccC--------CCc-eeee-CCCCccchhhHHHHHhc---CCCCcccCCCC
Q 016747 232 CSECPICLEEFHV--------GNE-VRGL-PCAHNFHIECIDEWLRL---NVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~--------~~~-~~~l-pC~H~Fh~~Ci~~wl~~---~~~CP~CR~~v 279 (383)
++.|.||+..|.. ++. +..+ .|+|.||..||.+|+.. +..||+||++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4789999988862 222 3333 49999999999999984 46799999865
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.57 E-value=3.2e-08 Score=89.56 Aligned_cols=50 Identities=34% Similarity=0.602 Sum_probs=36.7
Q ss_pred CCCccccccccccCCC-----c-eeeeCCCCccchhhHHHHHhcC------CCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGN-----E-VRGLPCAHNFHIECIDEWLRLN------VKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~-----~-~~~lpC~H~Fh~~Ci~~wl~~~------~~CP~CR~~v~ 280 (383)
.+.+|+||+|....+. . ....+|+|.||..||+.|...+ .+||+||....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3479999999864221 1 2334699999999999998742 35999998663
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.53 E-value=6.2e-08 Score=63.48 Aligned_cols=38 Identities=53% Similarity=1.230 Sum_probs=33.7
Q ss_pred cccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCccc
Q 016747 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRC 275 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~C 275 (383)
|+||++... .+..++|||.||..|++.|+. .+..||.|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999855 888899999999999999998 66679987
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.4e-08 Score=90.12 Aligned_cols=52 Identities=33% Similarity=0.744 Sum_probs=44.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHH-HHhcCCC-CcccCCCCCCCCc
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDE-WLRLNVK-CPRCRCSVFPNLD 284 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~-wl~~~~~-CP~CR~~v~~~~~ 284 (383)
..+..|+||++... .+..++|||+||..||-. |-.++.. ||+||+++.+++.
T Consensus 213 ~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 34589999999998 899999999999999999 8665555 9999999977643
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=6.4e-08 Score=96.28 Aligned_cols=48 Identities=31% Similarity=0.576 Sum_probs=42.8
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
....|+||.+.+. .++.++|||.||..|+..|+.....||.||..+..
T Consensus 25 ~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3479999999998 77889999999999999999987889999997743
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.6e-07 Score=88.60 Aligned_cols=52 Identities=31% Similarity=0.892 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCC--------------ceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGN--------------EVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~--------------~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~ 281 (383)
+....|+||+.+...-. ....+||.|+||..|+..|+. .+-.||.||+++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34478999999864211 123469999999999999999 55589999998864
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=3.6e-07 Score=62.34 Aligned_cols=34 Identities=38% Similarity=0.856 Sum_probs=21.7
Q ss_pred cccccccccC-CCceeeeCCCCccchhhHHHHHhcC
Q 016747 235 CPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLN 269 (383)
Q Consensus 235 C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~ 269 (383)
|+||.| +.. ...++.|+|||+||.+|+++++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 653 3457899999999999999998843
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.2e-07 Score=90.11 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=40.3
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhc-----CCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----NVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~~~CP~CR~~v~~~ 282 (383)
+..|+||++... .+..+.|||+||..||-+.+.. ...||+||..|.+.
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 478999999988 6777779999999999998763 34599999998764
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.18 E-value=1.1e-06 Score=67.19 Aligned_cols=47 Identities=26% Similarity=0.375 Sum_probs=38.6
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~ 281 (383)
...|+||.+.|. +|+.+||||.|...||..|+.. +.+||.|+.++..
T Consensus 4 ~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 478999999999 9999999999999999999997 8889999988754
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.18 E-value=5.2e-07 Score=85.98 Aligned_cols=46 Identities=35% Similarity=0.763 Sum_probs=42.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|-||.+.|. .+..+||+|.||..||+..|..+..||.|+..+..
T Consensus 24 LRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 68999999999 89999999999999999999999999999987743
No 30
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.16 E-value=1.5e-06 Score=65.91 Aligned_cols=47 Identities=34% Similarity=0.665 Sum_probs=34.5
Q ss_pred ccccccccccCCCceee-e-CCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 234 ECPICLEEFHVGNEVRG-L-PCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~-l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
.|+-|...+.++++... . -|+|.||..||.+||..+..||++|++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 34444444444554433 3 39999999999999999999999998763
No 31
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-06 Score=84.57 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=43.5
Q ss_pred CCCccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~~~~ 283 (383)
...+|.||+.+.+ +...|||.|. .|..|-+..-.+++.||+||+++....
T Consensus 289 ~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 289 SGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred CCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 3579999999998 8899999997 999999987768889999999986543
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.11 E-value=1.3e-06 Score=81.81 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=41.2
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..|-||-+.+. .+..++|||.||..||+..|..+..||+||.+.
T Consensus 26 lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 26 LRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 58999999999 888899999999999999999999999999865
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=4.7e-06 Score=80.01 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=36.6
Q ss_pred CCccccccccccCCCce--eeeCCCCccchhhHHHHHh-cCCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~ 282 (383)
+..|++|..+-...... ..-+|||.||.+|+...+. ....||.|+..+..+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 36899999963322222 2227999999999999765 455799999877554
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.93 E-value=7.9e-06 Score=57.46 Aligned_cols=42 Identities=29% Similarity=0.725 Sum_probs=33.4
Q ss_pred ccccccccccCCCceeeeCCC-----CccchhhHHHHHhc--CCCCcccC
Q 016747 234 ECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRL--NVKCPRCR 276 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~--~~~CP~CR 276 (383)
.|.||++ ...++++...||. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 4445567788985 78999999999973 45799995
No 35
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.9e-06 Score=64.83 Aligned_cols=47 Identities=36% Similarity=0.764 Sum_probs=35.0
Q ss_pred CccccccccccC--------C-CceeeeC-CCCccchhhHHHHHh---cCCCCcccCCCC
Q 016747 233 SECPICLEEFHV--------G-NEVRGLP-CAHNFHIECIDEWLR---LNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~--------~-~~~~~lp-C~H~Fh~~Ci~~wl~---~~~~CP~CR~~v 279 (383)
..|-||+-.|.. + +-|..+- |.|.||..||.+|+. .+..||+||+..
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 478888888742 2 2344443 999999999999998 334599999864
No 36
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.1e-06 Score=78.40 Aligned_cols=48 Identities=27% Similarity=0.526 Sum_probs=41.4
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~~ 283 (383)
.+|+||+.... .+..|+|+|.||..||+.-.. ...+|++||.+|....
T Consensus 8 ~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 68999999887 788999999999999998766 4556999999997653
No 37
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.3e-06 Score=60.18 Aligned_cols=45 Identities=29% Similarity=0.565 Sum_probs=36.1
Q ss_pred CccccccccccCCCceeeeCCCCc-cchhhHHHHHh-cCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLR-LNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~-~~~~CP~CR~~v~ 280 (383)
++|.||+|... +.+..-|||. .|..|-.+.++ .+..||+||+++.
T Consensus 8 dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 79999998876 5555679997 99999665555 7778999999874
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.7e-06 Score=79.15 Aligned_cols=44 Identities=43% Similarity=0.868 Sum_probs=38.5
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
+...|+||++.+. .++.+||+|.||..|+..++.....||.||.
T Consensus 12 ~~~~C~iC~~~~~---~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFR---EPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhh---cCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4479999999999 6688999999999999999885556999993
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.81 E-value=4.8e-06 Score=63.13 Aligned_cols=48 Identities=29% Similarity=0.724 Sum_probs=22.6
Q ss_pred Ccccccccccc-CCCceeee----CCCCccchhhHHHHHhc---CC--------CCcccCCCCC
Q 016747 233 SECPICLEEFH-VGNEVRGL----PCAHNFHIECIDEWLRL---NV--------KCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~-~~~~~~~l----pC~H~Fh~~Ci~~wl~~---~~--------~CP~CR~~v~ 280 (383)
.+|.||++... .++.+... .|++.||..||.+|+.. .+ +||.|+++|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 68999999875 33333222 48999999999999872 11 3999998773
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.77 E-value=5.6e-06 Score=87.88 Aligned_cols=51 Identities=27% Similarity=0.785 Sum_probs=38.2
Q ss_pred CCCCccccccccccCCCc--e--eeeCCCCccchhhHHHHHh--cCCCCcccCCCCC
Q 016747 230 TDCSECPICLEEFHVGNE--V--RGLPCAHNFHIECIDEWLR--LNVKCPRCRCSVF 280 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~--~--~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~v~ 280 (383)
++..+|+||+..+..-+. | +.-.|.|.||..|+.+|++ .+.+||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456799999998762221 1 1223899999999999998 5667999997663
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3.4e-06 Score=81.18 Aligned_cols=51 Identities=35% Similarity=0.705 Sum_probs=41.6
Q ss_pred CCccccccccccCCCceeeeC-CCCccchhhHHHHHh-cCCCCcccCCCCCCCCcc
Q 016747 232 CSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-LNVKCPRCRCSVFPNLDL 285 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~~~~ 285 (383)
+..|+||++.++ ..+..+ |.|.||.+||..-+. .++.||.||+++...+.+
T Consensus 43 ~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL 95 (381)
T KOG0311|consen 43 QVICPICLSLLK---KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL 95 (381)
T ss_pred hhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC
Confidence 368999999998 555555 999999999988887 667899999988655444
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.64 E-value=0.00012 Score=71.62 Aligned_cols=45 Identities=33% Similarity=0.829 Sum_probs=38.5
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHh--cCCCCcccCCCCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR--LNVKCPRCRCSVFP 281 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~v~~ 281 (383)
-|-||-|.-+ .++.=||||..|..|+..|-. ..++||.||..|..
T Consensus 371 LCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 5999988766 777789999999999999975 46889999998743
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.63 E-value=1.6e-05 Score=58.35 Aligned_cols=43 Identities=30% Similarity=0.783 Sum_probs=23.5
Q ss_pred CccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|++|.+.++ +++.+ .|.|+||..|+..-+. ..||+|+.+.-
T Consensus 8 LrCs~C~~~l~---~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILK---EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--S---S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred cCCcHHHHHhc---CCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 67999999998 77654 5999999999988655 35999987663
No 44
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.1e-05 Score=76.53 Aligned_cols=47 Identities=32% Similarity=0.874 Sum_probs=35.1
Q ss_pred CccccccccccCCCceeeeC-CCCccchhhHHHHHh---cCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR---LNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~---~~~~CP~CR~~v 279 (383)
..|.||.+-+....+..-+. |||+||..|+..|++ .+.+||+||-++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 58999955554444444455 999999999999998 235799999433
No 45
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.5e-05 Score=61.41 Aligned_cols=49 Identities=29% Similarity=0.667 Sum_probs=35.9
Q ss_pred CCCcccccccccc------------CCCce-eee-CCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 231 DCSECPICLEEFH------------VGNEV-RGL-PCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 231 ~~~~C~IC~~~~~------------~~~~~-~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..+.|+||+.-+- ..++. +.. .|+|.||..||.+||+.++.||+|.++-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 3467888876541 11222 222 4999999999999999999999997654
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.5e-05 Score=81.15 Aligned_cols=48 Identities=25% Similarity=0.612 Sum_probs=41.5
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~~ 283 (383)
..|++|-...+ ......|+|.||..|+.+-+. ++..||.|.+.+.++.
T Consensus 644 LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 57999998877 677778999999999999988 7788999999887654
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.44 E-value=4.6e-05 Score=75.55 Aligned_cols=47 Identities=32% Similarity=0.890 Sum_probs=37.0
Q ss_pred CCccccccccccCCC-ceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGN-EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
-.+|+||+|.+.... -.....|.|.||..|+..|.. .+||+||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 358999999997432 235566999999999999965 58999997554
No 48
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00012 Score=73.11 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..+.+|.||...+. .+..+||||.||..||.+-+.+...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 34589999999998 88899999999999999988888889999998864
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00036 Score=68.60 Aligned_cols=49 Identities=33% Similarity=0.917 Sum_probs=37.4
Q ss_pred CCCccccccccccCCCc--eeeeCCCCccchhhHHHHHhcC--CCCcccCCCC
Q 016747 231 DCSECPICLEEFHVGNE--VRGLPCAHNFHIECIDEWLRLN--VKCPRCRCSV 279 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~~v 279 (383)
....|+||++.+....+ ...+.|||.|...||++|+.+. ..||.|..+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 34789999999875432 3445699999999999999732 2499998754
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00027 Score=69.34 Aligned_cols=49 Identities=37% Similarity=0.872 Sum_probs=36.4
Q ss_pred CCCccccccccccCCC--c--eeeeC-CCCccchhhHHHHHh--c-----CCCCcccCCCC
Q 016747 231 DCSECPICLEEFHVGN--E--VRGLP-CAHNFHIECIDEWLR--L-----NVKCPRCRCSV 279 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~--~--~~~lp-C~H~Fh~~Ci~~wl~--~-----~~~CP~CR~~v 279 (383)
.+.+|.||++...... . -..+| |.|.||..||+.|-. + .+.||.||...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 3579999999876322 0 11234 999999999999974 3 46799999765
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.00 E-value=0.00014 Score=76.26 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=38.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..|++|+..+.........+|+|.||..|+..|-+-.++||+||..+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 46788887776554555667999999999999999999999999865
No 52
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00011 Score=71.21 Aligned_cols=43 Identities=28% Similarity=0.550 Sum_probs=32.3
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..-|.||+++.. +...+||||.-| |..-- +...+||+||+.+.
T Consensus 305 p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 468999999998 788999999855 44332 23345999998774
No 53
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.84 E-value=0.00052 Score=61.22 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=39.6
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..|-||-++|+ .++...|||.||..|.-.-.+....|-+|-+..
T Consensus 197 F~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 58999999999 899999999999999888888888999997644
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.81 E-value=0.00049 Score=67.25 Aligned_cols=46 Identities=37% Similarity=0.854 Sum_probs=37.4
Q ss_pred CCccccccccccCC-CceeeeCCCCccchhhHHHHHhcC--CCCcccCC
Q 016747 232 CSECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRC 277 (383)
Q Consensus 232 ~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~ 277 (383)
+..|..|.+.+-.. +....|||.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46799999988644 345668999999999999999854 46999994
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.75 E-value=0.00087 Score=67.52 Aligned_cols=51 Identities=29% Similarity=0.622 Sum_probs=43.3
Q ss_pred CCCCccccccccccCCCceee-eCCCCccchhhHHHHHhcCCCCcccCCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~~ 283 (383)
..+..|++|...+. .+.. ..|||.||..|+..|+..+..||.|+..+....
T Consensus 19 ~~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCcccccccc---CCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 44579999999998 6666 589999999999999999999999998775443
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0013 Score=61.70 Aligned_cols=49 Identities=31% Similarity=0.568 Sum_probs=39.1
Q ss_pred CCCCccccccccccCCCceeee-CCCCccchhhHHHHHh--cCCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR--LNVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~--~~~~CP~CR~~v~~ 281 (383)
+.+.+|++|.+... .|... +|||+||..|+..-.. ...+||.|-+++.+
T Consensus 237 t~~~~C~~Cg~~Pt---iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCC---CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 45679999999887 55554 5999999999998765 44689999887753
No 57
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.71 E-value=0.00051 Score=64.96 Aligned_cols=50 Identities=28% Similarity=0.658 Sum_probs=41.1
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhc-----------------------CCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----------------------NVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----------------------~~~CP~CR~~v~ 280 (383)
....|.||+--|..++...+++|-|.||..|+...|.. ...||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34689999999998888899999999999999876531 123999999773
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0013 Score=63.50 Aligned_cols=72 Identities=24% Similarity=0.467 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCcccccc----CC-CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 207 AAQREAVEALIQELPKFRLKA----VP-TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 207 ~~~~~~~~~~~~~lp~~~~~~----~~-~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
......++.++..+|..+... .+ .+++.|+||..... ..+..||+|.-|..||.+-+...+.|=.|+..+..
T Consensus 392 ~~e~~~V~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 392 NFESHLVNRASSQLPERKEESFNKDLPDSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred HHHHHHHHHHHhhcchhhHHhhcCCCCCcccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 344445666777777665432 22 45689999987765 67788999999999999999999999999987753
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.006 Score=55.61 Aligned_cols=52 Identities=31% Similarity=0.793 Sum_probs=41.9
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhc--------CCCCcccCCCCCCCCcc
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPRCRCSVFPNLDL 285 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~v~~~~~~ 285 (383)
..|..|-..+..+|.. .|-|-|.||.+|+..|-.. ...||.|..+|+++.++
T Consensus 51 pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 4699999998877665 4779999999999999652 23499999999887544
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0011 Score=62.68 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=41.1
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
...|-||.+.|. .++...|+|.||..|-..=+++...|++|-+...
T Consensus 241 Pf~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccc---cchhhcCCceeehhhhccccccCCcceecccccc
Confidence 357999999999 8999999999999998888888889999987663
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.00082 Score=63.40 Aligned_cols=42 Identities=26% Similarity=0.588 Sum_probs=35.1
Q ss_pred CCccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..-|+||++... +...|+|||. -|.+|-+.. +.||+||+.|.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 568999999888 8999999995 899996553 36999998764
No 62
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.34 E-value=0.00071 Score=65.03 Aligned_cols=46 Identities=24% Similarity=0.563 Sum_probs=39.1
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..+|.+|...+. |......|-|.||++||...+.....||.|...|
T Consensus 15 ~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 15 HITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 368999999998 2334456999999999999999999999998866
No 63
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.32 E-value=0.0023 Score=46.41 Aligned_cols=40 Identities=30% Similarity=0.684 Sum_probs=27.6
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHHHh--cCCCCcc
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR--LNVKCPR 274 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~--~~~~CP~ 274 (383)
...|+|.+..++ +|+.- .|||.|-++.|.+++. ....||.
T Consensus 11 ~~~CPiT~~~~~---~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE---DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S---SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh---CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 378999999999 66654 6999999999999994 3445998
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.30 E-value=0.0017 Score=65.71 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh-----cCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-----LNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~v~~~ 282 (383)
.+..+|-+|.+.-+ +.....|.|.||..|+..++. .+-+||.|...+...
T Consensus 534 k~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44568999998877 777888999999999999876 456799998766443
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.93 E-value=0.0064 Score=58.75 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=40.6
Q ss_pred ccCCCCCCccccccccccCCCceeeeCCCCccchhhHHHH--HhcCCCCcccCCCC
Q 016747 226 KAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEW--LRLNVKCPRCRCSV 279 (383)
Q Consensus 226 ~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~v 279 (383)
++.+++...|.||-+... ....+||+|..|.-|--.. |..++.||+||..-
T Consensus 55 ddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 334455668999999887 7888999999999996554 55788999999744
No 66
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.85 E-value=0.0052 Score=68.50 Aligned_cols=50 Identities=28% Similarity=0.633 Sum_probs=39.3
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcC----------CCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----------VKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----------~~CP~CR~~v~ 280 (383)
.++.|.||..+--.......|.|+|+||..|.+..|+++ -.||+|+.+|.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 457899998876555567889999999999998876632 24999999884
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0099 Score=58.84 Aligned_cols=45 Identities=33% Similarity=0.827 Sum_probs=36.5
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhc--------CCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~ 277 (383)
..|.||.+...-....+.+||+|+||..|++..... .-.||-|+.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 689999999875577889999999999999999761 224877765
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.57 E-value=0.008 Score=41.82 Aligned_cols=43 Identities=30% Similarity=0.696 Sum_probs=21.8
Q ss_pred cccccccccCCCceeeeC--CCCccchhhHHHHHh-cCCCCcccCCC
Q 016747 235 CPICLEEFHVGNEVRGLP--CAHNFHIECIDEWLR-LNVKCPRCRCS 278 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~-~~~~CP~CR~~ 278 (383)
|++|.+++...+ ....| ||+..|..|...-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999984332 23344 899999999988886 56779999975
No 69
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.48 E-value=0.0094 Score=56.53 Aligned_cols=42 Identities=36% Similarity=0.790 Sum_probs=36.0
Q ss_pred CccccccccccCCCceeeeC-CCCccchhhHHHHHh-cCCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLR-LNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-~~~~CP~CR~ 277 (383)
..|+.|...+. .+.++| |+|.||.+||..-|. ....||.|..
T Consensus 275 LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 68999999988 777777 899999999997765 5667999976
No 70
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.16 E-value=0.022 Score=49.52 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=35.0
Q ss_pred CCCCCccccccccccCCCceeeeCCCC-----ccchhhHHHHHh--cCCCCcccCCCCC
Q 016747 229 PTDCSECPICLEEFHVGNEVRGLPCAH-----NFHIECIDEWLR--LNVKCPRCRCSVF 280 (383)
Q Consensus 229 ~~~~~~C~IC~~~~~~~~~~~~lpC~H-----~Fh~~Ci~~wl~--~~~~CP~CR~~v~ 280 (383)
...+..|-||.+... +. .-||.. .-|.+|++.|+. +...|++|+.+..
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 345578999998854 22 247654 469999999998 4456999998764
No 71
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.13 E-value=0.018 Score=39.97 Aligned_cols=40 Identities=38% Similarity=0.811 Sum_probs=26.6
Q ss_pred cccccccccCCCceeeeCCCC-----ccchhhHHHHHh--cCCCCccc
Q 016747 235 CPICLEEFHVGNEVRGLPCAH-----NFHIECIDEWLR--LNVKCPRC 275 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H-----~Fh~~Ci~~wl~--~~~~CP~C 275 (383)
|-||++.-..++ +...||+- ..|.+|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998876444 56678743 589999999998 55669887
No 72
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.09 E-value=0.0086 Score=50.72 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=33.1
Q ss_pred CccccccccccCCCceeeeCCC------CccchhhHHHHHhcCCCCcccC
Q 016747 233 SECPICLEEFHVGNEVRGLPCA------HNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~------H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
-+|.||++.+...+-++.++|| |.||.+|+++|-..++.=|.=|
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 5899999999875567777886 7899999999954433334433
No 73
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.05 E-value=0.014 Score=41.60 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=33.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
..|..|...-. ....+||||..|..|...+ +-+.||+|-.++...
T Consensus 8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccc---ccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 45666765544 6678999999999997664 556799999888543
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.00 E-value=0.017 Score=46.89 Aligned_cols=32 Identities=25% Similarity=0.703 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHH
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECID 263 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~ 263 (383)
++..|++|...+.. ......||||.||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 34689999999874 456678999999999975
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.93 E-value=0.01 Score=55.06 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=32.6
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
.|.-|..--. ++.-..+.|+|+||..|...-. ...||+||..+.
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceee
Confidence 4777765554 5666778899999999976532 237999999874
No 76
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.0094 Score=51.67 Aligned_cols=30 Identities=40% Similarity=0.898 Sum_probs=26.9
Q ss_pred CCCCccccccccccCCCceeeeCCCCccch
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHI 259 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~ 259 (383)
.+..+|.||+|++..++.+..|||-.++|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 344699999999999999999999999986
No 77
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.019 Score=61.53 Aligned_cols=65 Identities=26% Similarity=0.590 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCccccccCCCCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 210 REAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 210 ~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
++..++..+.+...+..+..-....|..|...+.. ..+.-.|||.||..|+. .+...||.|+...
T Consensus 818 k~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 818 KKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDL--PFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHHHHhhcccceeeeeeecccCCcccc--ceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 33444444444444444433344689999988872 33455699999999998 4556799998744
No 78
>PHA02862 5L protein; Provisional
Probab=94.78 E-value=0.021 Score=48.80 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=34.0
Q ss_pred CccccccccccCCCceeeeCCCC-----ccchhhHHHHHh--cCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAH-----NFHIECIDEWLR--LNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H-----~Fh~~Ci~~wl~--~~~~CP~CR~~v~~ 281 (383)
+.|=||.+.-. +. .-||+. .-|.+|+.+|+. ++..|++|+.+..-
T Consensus 3 diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 57999998854 22 367754 489999999998 45569999987643
No 79
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.024 Score=54.88 Aligned_cols=47 Identities=32% Similarity=0.711 Sum_probs=38.9
Q ss_pred CccccccccccCCC---ceeeeCCCCccchhhHHHHHhc-CCCCcccCCCC
Q 016747 233 SECPICLEEFHVGN---EVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~---~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v 279 (383)
.+|-||-++|..++ .|+.|.|||.+|..|+.+.+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998663 4778889999999999888763 34599999985
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.031 Score=53.83 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=38.7
Q ss_pred CCCCCccccccccccCCCceeeeC-CCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 229 PTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 229 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
+.+...|++|+..-. ++..+. -|-+||..|+-+.+..+..||+=-.+.
T Consensus 297 ~~~~~~CpvClk~r~---Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQ---NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccC---CCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345579999998877 555555 599999999999999999999865444
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.07 E-value=0.14 Score=50.65 Aligned_cols=75 Identities=17% Similarity=0.430 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCccccccCCCCCCccccccccccCCCc-----------------eeeeC--CCCccchhhHHHHHh
Q 016747 207 AAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNE-----------------VRGLP--CAHNFHIECIDEWLR 267 (383)
Q Consensus 207 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~-----------------~~~lp--C~H~Fh~~Ci~~wl~ 267 (383)
..-.++-++.+++-|.....+..++.+.|--|+..-..-+- +...+ |....|.+|+.+|+.
T Consensus 246 drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFa 325 (358)
T PF10272_consen 246 DRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFA 325 (358)
T ss_pred HHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhh
Confidence 44455666666777777766555666788889876531000 01112 345678999999986
Q ss_pred cC-------------CCCcccCCCCCC
Q 016747 268 LN-------------VKCPRCRCSVFP 281 (383)
Q Consensus 268 ~~-------------~~CP~CR~~v~~ 281 (383)
.+ -+||.||+++..
T Consensus 326 srQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 326 SRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred hcCCCCChhhhhcCCCCCCCCccccee
Confidence 32 259999998743
No 82
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.064 Score=49.77 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=42.9
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
...|++|.+.+.+...+..| ||||+|+.+|..+.+.....||+|-.++...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 35799999999876666665 5999999999999999888999998877543
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.59 E-value=0.057 Score=57.97 Aligned_cols=48 Identities=35% Similarity=0.820 Sum_probs=34.9
Q ss_pred CCCCccccccccccCCCcee-eeCCCCccchhhHHHHHhcCC-------CCcccCC
Q 016747 230 TDCSECPICLEEFHVGNEVR-GLPCAHNFHIECIDEWLRLNV-------KCPRCRC 277 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~wl~~~~-------~CP~CR~ 277 (383)
.+..+|.||.+.+...+.+- --.|-|+||..||++|-.... .||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 44579999999987544331 123889999999999976311 3999983
No 84
>PHA03096 p28-like protein; Provisional
Probab=93.52 E-value=0.036 Score=53.36 Aligned_cols=45 Identities=31% Similarity=0.550 Sum_probs=31.4
Q ss_pred CccccccccccCCC----ceeeeC-CCCccchhhHHHHHh---cCCCCcccCC
Q 016747 233 SECPICLEEFHVGN----EVRGLP-CAHNFHIECIDEWLR---LNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl~---~~~~CP~CR~ 277 (383)
..|.||++...... .-..|+ |.|.||..|++.|-. ...+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999876321 112355 999999999999976 2334666654
No 85
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.05 Score=50.00 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=31.3
Q ss_pred cccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCC
Q 016747 235 CPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
|-.|.+.-. .+..+||.|. +|..|-.+ -..||+|+....
T Consensus 161 Cr~C~~~~~---~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREA---TVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCc---eEEeecccceEeccccccc----CccCCCCcChhh
Confidence 889988766 7889999996 99999755 346999987653
No 86
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.058 Score=47.59 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=33.2
Q ss_pred CccccccccccCCC----ceeeeCCCCccchhhHHHHHhc----CC-------CCcccCCCCCC
Q 016747 233 SECPICLEEFHVGN----EVRGLPCAHNFHIECIDEWLRL----NV-------KCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~----~~~~lpC~H~Fh~~Ci~~wl~~----~~-------~CP~CR~~v~~ 281 (383)
..|-||+..--.|. .+-...||..||.-|+..||+. ++ .||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 35777765543332 2233569999999999999972 11 39999888743
No 87
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.58 E-value=0.12 Score=44.96 Aligned_cols=33 Identities=33% Similarity=0.749 Sum_probs=23.3
Q ss_pred CCccccccccccCCCceeeeCC------------CCc-cchhhHHHHHh
Q 016747 232 CSECPICLEEFHVGNEVRGLPC------------AHN-FHIECIDEWLR 267 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC------------~H~-Fh~~Ci~~wl~ 267 (383)
+..|+||+|... +.+.|-| +.. -|..|+++.-+
T Consensus 2 d~~CpICme~PH---NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPH---NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCC---ceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 468999999987 5555544 332 57889998754
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.30 E-value=0.05 Score=58.45 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=37.0
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHh--cCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR--LNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~v~~ 281 (383)
..|.+|.+ . +.+...+|+|.||..|+..-+. ....||.||..+..
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 3 3788889999999999999877 23359999987643
No 89
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.12 E-value=0.18 Score=42.54 Aligned_cols=49 Identities=33% Similarity=0.598 Sum_probs=36.9
Q ss_pred CCCccccccccccCCCceeee-C---CCCccchhhHHHHHh---cCCCCcccCCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGL-P---CAHNFHIECIDEWLR---LNVKCPRCRCSVFPN 282 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l-p---C~H~Fh~~Ci~~wl~---~~~~CP~CR~~v~~~ 282 (383)
.-.+|.||.|... +.+-| | ||-..|..|-...++ .+..||.|+.+....
T Consensus 79 ~lYeCnIC~etS~---ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA---EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc---hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4479999999876 33333 3 899999999777666 566799999887543
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.062 Score=51.43 Aligned_cols=43 Identities=30% Similarity=0.559 Sum_probs=30.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
-.|.-|--.+. ..-+.+||.|+||.+|-+. ...+.||.|-.+|
T Consensus 91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 35777754443 2446789999999999754 3456799998765
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.80 E-value=0.088 Score=35.83 Aligned_cols=41 Identities=29% Similarity=0.786 Sum_probs=22.8
Q ss_pred cccccccccCCCceeeeCCCCccchhhHHHHHhcCC--CCccc
Q 016747 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV--KCPRC 275 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~C 275 (383)
|.+|.+....|.....-.|+=.+|..|++.++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677877776444443335888999999999998554 69987
No 92
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.62 E-value=0.22 Score=47.36 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=39.3
Q ss_pred CCCCccccccccccCCCce-eeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
.....|+|....|...... ...||||+|...+++..- ....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 4457899999999533333 445899999999999973 356799999887643
No 93
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.16 Score=50.40 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=38.9
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcC---CCCcccCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN---VKCPRCRCS 278 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~ 278 (383)
..|||=.+.-.++..|..|.|||+.+.+-+.+.-+.. ..||+|-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 5799999988888899999999999999999987633 469999543
No 94
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.015 Score=57.04 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=42.6
Q ss_pred CccccccccccCC-CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 233 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 233 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
..|+||.+.++.. +....+-|||..|..|+++|+.....||.|+..+..+
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 5799999998744 4566778999999999999999888999999988554
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.56 E-value=0.14 Score=48.83 Aligned_cols=45 Identities=31% Similarity=0.751 Sum_probs=37.7
Q ss_pred CccccccccccCC-CceeeeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 233 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
..|+||.+.+... ..+..++|||..|..|.......+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3499999987654 34667899999999999998877789999987
No 96
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.22 E-value=0.16 Score=49.22 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=33.2
Q ss_pred CCccccccccccCCCceeeeCC--CCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPC--AHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
-.+|+||.+.+. .+ ...| ||.-|..|-.+ ....||.||.++.
T Consensus 48 lleCPvC~~~l~---~P-i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLS---PP-IFQCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCc---cc-ceecCCCcEehhhhhhh---hcccCCccccccc
Confidence 468999999997 33 3457 89999999764 4567999999885
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.97 E-value=0.19 Score=48.65 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=34.8
Q ss_pred CccccccccccCCCce-eeeCCCCccchhhHHHHHh-cCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~ 280 (383)
+.|+.|+|.+...|+- .--|||-..|..|....-+ -+..||-||....
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 4599999999765543 3356898888888766544 3456999998653
No 98
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=88.66 E-value=0.23 Score=49.59 Aligned_cols=35 Identities=31% Similarity=0.659 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR 267 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 267 (383)
+++..|+||..-|+ ++..|||+|..|..|...-+.
T Consensus 2 eeelkc~vc~~f~~---epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR---EPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhcc---CceEeecccHHHHHHHHhhcc
Confidence 34578999999999 999999999999999886654
No 99
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.85 E-value=0.47 Score=50.93 Aligned_cols=49 Identities=31% Similarity=0.596 Sum_probs=36.8
Q ss_pred CCCCccccccccccCCCceeeeCCCC-----ccchhhHHHHHh--cCCCCcccCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAH-----NFHIECIDEWLR--LNVKCPRCRCSV 279 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H-----~Fh~~Ci~~wl~--~~~~CP~CR~~v 279 (383)
+++..|-||..+=.. |.+---||++ ..|.+|+-+|+. ....|-+|+.++
T Consensus 10 ~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 344789999987543 4555567765 389999999998 445699999865
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.15 E-value=0.52 Score=44.96 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=32.3
Q ss_pred ccccccccccCCCce--eeeCCCCccchhhHHHHHhcC-CCCcccCCCC
Q 016747 234 ECPICLEEFHVGNEV--RGLPCAHNFHIECIDEWLRLN-VKCPRCRCSV 279 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~v 279 (383)
.|++|-.+--..... ..-+|+|..|.+|.+..+..+ ..||-|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 588887754322222 223799999999999998754 4599997655
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.56 E-value=0.22 Score=55.93 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=36.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
..|.||++.+.. .....-|||.+|..|...|+..+..||+|+.
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 479999999872 3344569999999999999999999999985
No 102
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.43 Score=50.32 Aligned_cols=57 Identities=26% Similarity=0.624 Sum_probs=41.9
Q ss_pred cCccccccCCCCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCCC
Q 016747 220 LPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 220 lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~~ 283 (383)
++....++..+....|.+|+++. ..+..+|. |..|+++|+..+..||+|++.+..+.
T Consensus 467 ~s~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 467 LSEATPSQLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred CCCCChhhhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 33333334445567899999988 34556787 89999999999999999998775543
No 103
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.60 E-value=0.51 Score=51.28 Aligned_cols=36 Identities=22% Similarity=0.580 Sum_probs=27.2
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHH
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL 266 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 266 (383)
+.+..|.+|...+-. ..-..-||||.||.+|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 445789999988752 234556899999999998754
No 104
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=0.4 Score=50.26 Aligned_cols=42 Identities=33% Similarity=0.644 Sum_probs=31.7
Q ss_pred CccccccccccCC-CceeeeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 233 SECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
..|.||+..|... -+++.+-|||..|..|+..-. +.+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 5799998777532 356778899999999998754 46799 654
No 105
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.57 E-value=1.1 Score=31.95 Aligned_cols=32 Identities=28% Similarity=0.920 Sum_probs=27.4
Q ss_pred CccccccccccCCCceeeeC-CCCccchhhHHH
Q 016747 233 SECPICLEEFHVGNEVRGLP-CAHNFHIECIDE 264 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~ 264 (383)
..|.+|.+.+..++..+.-| ||-.+|++|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 57999999998777777777 999999999644
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=82.43 E-value=0.34 Score=51.52 Aligned_cols=45 Identities=33% Similarity=0.744 Sum_probs=37.2
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcC---CCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN---VKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~v~ 280 (383)
.+|+||.+.+. ++..+.|.|.||..|+-.-+... ..||+|+..+.
T Consensus 22 lEc~ic~~~~~---~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVK---EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEee---ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 68999999998 67788899999999988776633 35999997663
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=1.1 Score=45.23 Aligned_cols=36 Identities=28% Similarity=0.691 Sum_probs=26.7
Q ss_pred CCcccccc-ccccCCCceeeeCCCCccchhhHHHHHh
Q 016747 232 CSECPICL-EEFHVGNEVRGLPCAHNFHIECIDEWLR 267 (383)
Q Consensus 232 ~~~C~IC~-~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 267 (383)
..+|.||. ++....+.-....|+|.||.+|.++-++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 36899999 4444333334566999999999998877
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.68 E-value=1.4 Score=47.15 Aligned_cols=38 Identities=21% Similarity=0.510 Sum_probs=30.5
Q ss_pred ccccccccccCCCceeee--CCCCccchhhHHHHHhcCCCCcc
Q 016747 234 ECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWLRLNVKCPR 274 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~~~~~CP~ 274 (383)
.|.+|...+. ..... -|||.-|.+|+++|+.++..||.
T Consensus 781 ~CtVC~~vi~---G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR---GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee---eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 6888877765 33333 39999999999999999888877
No 109
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.03 E-value=0.68 Score=32.02 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=22.9
Q ss_pred eeCC-CCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 250 GLPC-AHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 250 ~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...| .|..|..|+...+.....||+|..+++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3557 5889999999999999999999987754
No 110
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=78.22 E-value=0.68 Score=44.13 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CcccCCCC
Q 016747 272 CPRCRCSV 279 (383)
Q Consensus 272 CP~CR~~v 279 (383)
=|.|.+..
T Consensus 234 pP~~SQn~ 241 (381)
T PF05297_consen 234 PPYVSQNG 241 (381)
T ss_dssp --------
T ss_pred CCcccccC
Confidence 37776655
No 111
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.71 E-value=1.2 Score=47.56 Aligned_cols=26 Identities=35% Similarity=0.713 Sum_probs=22.5
Q ss_pred eeeCCCCccchhhHHHHHhcCCCCcc
Q 016747 249 RGLPCAHNFHIECIDEWLRLNVKCPR 274 (383)
Q Consensus 249 ~~lpC~H~Fh~~Ci~~wl~~~~~CP~ 274 (383)
....|+|+.|.+|...|+.....||-
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34569999999999999998888884
No 112
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=76.72 E-value=1.4 Score=42.60 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHhcCccccccCCCCCCccccccccccCCCceeeeC-----CCCccchhhHHHHHhcCCCCcccCC
Q 016747 215 ALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLP-----CAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 215 ~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lp-----C~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
.....+.....+........|+||...... -.... -.|.+|..|-..|-..+..||.|-.
T Consensus 155 ~~a~~l~~~~~~~~~w~~g~CPvCGs~P~~---s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 155 ALAAALDAALLPPEGWQRGYCPVCGSPPVL---SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp HHHHT--TTSSS---TT-SS-TTT---EEE---EEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred HHHHhccccccccCCccCCcCCCCCCcCce---EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 333333333333333445799999987641 11111 1356888999999888889999954
No 113
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.07 E-value=1.6 Score=42.20 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=36.4
Q ss_pred CCCccccccccccCCCc-eeeeCCC-----CccchhhHHHHHh--cCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNE-VRGLPCA-----HNFHIECIDEWLR--LNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~-~~~lpC~-----H~Fh~~Ci~~wl~--~~~~CP~CR~~v~ 280 (383)
++..|-||.++...... +...||. +..|..|+..|+. ....|.+|.....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 34689999997753222 4567875 3479999999988 5566999987553
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.50 E-value=2.7 Score=40.15 Aligned_cols=28 Identities=21% Similarity=0.608 Sum_probs=21.7
Q ss_pred CCCccchhhHHHHHh-------------cCCCCcccCCCCC
Q 016747 253 CAHNFHIECIDEWLR-------------LNVKCPRCRCSVF 280 (383)
Q Consensus 253 C~H~Fh~~Ci~~wl~-------------~~~~CP~CR~~v~ 280 (383)
|....|.+|+.+|+. ++-+||+||++..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 556788999999875 2346999999874
No 115
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.38 E-value=1.5 Score=41.26 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=32.9
Q ss_pred CCCCccccccccccCCCce-eeeCCC-----CccchhhHHHHHhcCC--------CCcccCCCC
Q 016747 230 TDCSECPICLEEFHVGNEV-RGLPCA-----HNFHIECIDEWLRLNV--------KCPRCRCSV 279 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~-~~lpC~-----H~Fh~~Ci~~wl~~~~--------~CP~CR~~v 279 (383)
+.+-.|=||...-++.... -.-||. |--|..|+..|+.+++ .||-|+..-
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3446799998765422111 234663 5699999999987322 499999844
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.33 E-value=1.8 Score=40.30 Aligned_cols=45 Identities=24% Similarity=0.725 Sum_probs=32.5
Q ss_pred CccccccccccCCCceee--eC-CCCccchhhHHHHHhcC-CCCc--ccCC
Q 016747 233 SECPICLEEFHVGNEVRG--LP-CAHNFHIECIDEWLRLN-VKCP--RCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~--lp-C~H~Fh~~Ci~~wl~~~-~~CP--~CR~ 277 (383)
..|++|..+--..-..+. -| |-|..|.+|.+..+... ..|| -|..
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 579999987543323333 35 99999999999998844 4599 6744
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.06 E-value=2 Score=46.23 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCccccccccccCCC-ceeeeC---CCCccchhhHHHHHh------cCCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGN-EVRGLP---CAHNFHIECIDEWLR------LNVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~-~~~~lp---C~H~Fh~~Ci~~wl~------~~~~CP~CR~~v 279 (383)
...|.+|.-++..++ .--.+| |+|.||..||..|.. .+-.|++|.+-+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 356777777776422 222344 999999999999976 233589998755
No 118
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=70.66 E-value=2.6 Score=40.72 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=35.4
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhc---CCCCcccC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCR 276 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR 276 (383)
..|++--+.-.....|..+.|||+.-.+-++..-+. ...||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 479988887777778999999999999998886552 33599995
No 119
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=68.58 E-value=1.7 Score=45.84 Aligned_cols=41 Identities=32% Similarity=0.748 Sum_probs=26.1
Q ss_pred Ccccccccc-----ccCCCceeeeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 233 SECPICLEE-----FHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 233 ~~C~IC~~~-----~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
..|.+|... |+.....+...|+++||..|++. +...||.|-
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 578888332 11112234456999999999755 445599993
No 120
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.75 E-value=3.2 Score=35.10 Aligned_cols=7 Identities=14% Similarity=0.714 Sum_probs=2.9
Q ss_pred chhhhHH
Q 016747 123 KWGFLIW 129 (383)
Q Consensus 123 ~w~~~i~ 129 (383)
||++++.
T Consensus 1 RW~l~~i 7 (130)
T PF12273_consen 1 RWVLFAI 7 (130)
T ss_pred CeeeHHH
Confidence 3544333
No 121
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=64.70 E-value=6.8 Score=27.41 Aligned_cols=42 Identities=21% Similarity=0.541 Sum_probs=19.8
Q ss_pred CccccccccccCCCceee-eCCCCccchhhHHHHHh---cC--CCCcccCCC
Q 016747 233 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLR---LN--VKCPRCRCS 278 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~---~~--~~CP~CR~~ 278 (383)
..|++....+. .|.+ ..|.|.-|.+ ++.|+. +. -.||+|.++
T Consensus 3 L~CPls~~~i~---~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR---IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S---SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE---eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 56899888887 5544 4599975543 445554 22 249999753
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.55 E-value=3.4 Score=39.38 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=26.8
Q ss_pred CccccccccccCCCceeeeCC----CCccchhhHHHHHhc
Q 016747 233 SECPICLEEFHVGNEVRGLPC----AHNFHIECIDEWLRL 268 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC----~H~Fh~~Ci~~wl~~ 268 (383)
..|.+|.|.++ +.....| .|.||..|-++-++.
T Consensus 269 LcCTLC~ERLE---DTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLE---DTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhc---cCceeecCCCcccceecccCHHHHHh
Confidence 57999999998 4444556 699999999998874
No 123
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.43 E-value=4.9 Score=41.33 Aligned_cols=35 Identities=34% Similarity=0.760 Sum_probs=29.4
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHh
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR 267 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 267 (383)
...+|-||.+.+.. ....+.|||.||..|+...+.
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhh
Confidence 34689999999873 466778999999999999876
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.34 E-value=4.6 Score=36.92 Aligned_cols=42 Identities=26% Similarity=0.654 Sum_probs=33.4
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
..|.+|....-. ..+.=.||-.+|..|+...+++...||.|.
T Consensus 182 k~Cn~Ch~LvIq--g~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ--GIRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhe--eeccCcccchhhhHHHHHHhcccCcCCchh
Confidence 579999987652 223345777899999999999989999994
No 125
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.33 E-value=23 Score=34.32 Aligned_cols=50 Identities=28% Similarity=0.628 Sum_probs=39.8
Q ss_pred CCCCccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
.+.+.|-+|...+.. +.+. .|.|.|+..|...|....+.||.||....+.
T Consensus 103 ~~~~~~~~~~g~l~v---pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 103 QDHDICYICYGKLTV---PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CCccceeeeeeeEEe---cccccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 345689999988873 3223 3999999999999999889999999877554
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.32 E-value=5.6 Score=40.11 Aligned_cols=43 Identities=26% Similarity=0.665 Sum_probs=30.0
Q ss_pred CccccccccccCCCceee--eCCCCccchhhHHHHHhcCCCCccc
Q 016747 233 SECPICLEEFHVGNEVRG--LPCAHNFHIECIDEWLRLNVKCPRC 275 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~--lpC~H~Fh~~Ci~~wl~~~~~CP~C 275 (383)
..|+.|.-.++...-.-. -.|||.||..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 468888776643332222 2389999999999998877777554
No 127
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.72 E-value=12 Score=31.54 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 016747 129 WLLFSYCG 136 (383)
Q Consensus 129 ~li~~~~~ 136 (383)
|++|++++
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 44454433
No 128
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=54.81 E-value=6.8 Score=38.21 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=35.9
Q ss_pred HHHhcCccccccCCCCCCccccccccccCCCceeee--CC--CCccchhhHHHHHhcCCCCcccCC
Q 016747 216 LIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGL--PC--AHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 216 ~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l--pC--~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
+...++.............|+||........ .+.- .= .|..|..|-..|-..+..||.|-.
T Consensus 168 ~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 168 WALGLEGGAVVETRESRTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred HHHhCCccccCcccCCCCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3344554333222233458999998764210 1110 12 245777888899888889999975
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=53.33 E-value=12 Score=36.57 Aligned_cols=48 Identities=25% Similarity=0.615 Sum_probs=35.7
Q ss_pred CccccccccccCCCce-eeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEV-RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|+||.+.....+.. .-.||+|..|..|+..-...+..||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6899999987433322 22358888888898888888889999995543
No 130
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=53.10 E-value=19 Score=35.14 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=41.8
Q ss_pred HHHHHHhcCccccccCCCC----CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 213 VEALIQELPKFRLKAVPTD----CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 213 ~~~~~~~lp~~~~~~~~~~----~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
.+..-.-+|-....+.+.. ...|-.|.+........+.-.|.|.||.+|-.-.-+.-..||-|..
T Consensus 307 ARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 307 ARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 3344455666666665532 2459999777664444454559999999995443334456999964
No 131
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=52.93 E-value=7.2 Score=23.50 Aligned_cols=22 Identities=32% Similarity=0.754 Sum_probs=11.7
Q ss_pred ccccccccccCCCceeeeC-CCCcc
Q 016747 234 ECPICLEEFHVGNEVRGLP-CAHNF 257 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lp-C~H~F 257 (383)
.|+-|..... ...+.-| |||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4666666654 2233334 66665
No 132
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=52.80 E-value=9.7 Score=34.82 Aligned_cols=40 Identities=33% Similarity=0.818 Sum_probs=26.5
Q ss_pred CCcccccccc-----ccCCCceeeeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 232 CSECPICLEE-----FHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 232 ~~~C~IC~~~-----~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
+..|-+|.++ |..+...+--.|+-+||..|..+ ..||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4688899753 12112223334999999999762 6799995
No 133
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=52.58 E-value=9.9 Score=37.14 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=31.0
Q ss_pred CCCccccccccccCCCceeee--CC--CCccchhhHHHHHhcCCCCcccCC
Q 016747 231 DCSECPICLEEFHVGNEVRGL--PC--AHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l--pC--~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
....|++|....... ...+ .= .|..|..|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 457899999886421 1111 12 345788888899888889999974
No 134
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.55 E-value=6.1 Score=42.76 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=32.2
Q ss_pred CCccccccccccCC----CceeeeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 232 CSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 232 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
+..|.-|.+..... +....+.|||.||..|+..-..+++ |-.|-
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 35799998875422 3567788999999999987766554 66664
No 135
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.54 E-value=70 Score=31.86 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=28.5
Q ss_pred eeeehhHHHHHHHHHHHHhhhcccccccCCCceeeeehhhHHHHHHH
Q 016747 8 FKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVF 54 (383)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~c~~p~~~W~~v~y~~~~~~ 54 (383)
|-.--|+-+..+|++++++++-|+-+-+- -+.+=|+|+-.++.++
T Consensus 162 FYYssG~v~GilaSLl~Viflv~rf~PKk--t~~~~iliGgWs~slY 206 (452)
T KOG3817|consen 162 FYYSSGIVIGILASLLVVIFLVARFFPKK--TMMYGILIGGWSISLY 206 (452)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhcccc--cceEEEEEccchhHHH
Confidence 44556777778888888999999844433 3333345555555555
No 136
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=50.54 E-value=12 Score=26.39 Aligned_cols=42 Identities=29% Similarity=0.572 Sum_probs=19.7
Q ss_pred cccccccccCCC------ceeeeC-CCCccchhhHHHHHhcCCCCcccC
Q 016747 235 CPICLEEFHVGN------EVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 235 C~IC~~~~~~~~------~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
|--|+..+..+. ....-| |++.||.+|=.=.=+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666665431 223334 899999999433223445699884
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.59 E-value=12 Score=35.17 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=28.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHh
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR 267 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 267 (383)
+.|+.|++.+. .|+..|=||.|+.+||.+.+.
T Consensus 44 dcCsLtLqPc~---dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCR---DPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeeccccc---CCccCCCCeeeeHHHHHHHHH
Confidence 57999999998 899999999999999998764
No 138
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.86 E-value=22 Score=27.37 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=19.6
Q ss_pred CccccccccccCCC--cee--eeCCCCccchhhHHHHHh-cCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVGN--EVR--GLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~~--~~~--~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~~ 283 (383)
..|.||-++.-... ++. ...|+--.|+.|.+-=.+ .++.||.|+......+
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 68999999875432 222 234777789999764433 6778999997765443
No 140
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=46.01 E-value=16 Score=35.42 Aligned_cols=42 Identities=5% Similarity=-0.219 Sum_probs=33.7
Q ss_pred CccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
.+|-.|-+... .....+|+|. ||.+|-. +....+||.|...+
T Consensus 344 ~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 344 LKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred cccccccCcee---eeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 58999988776 6677789996 9999987 55677899997654
No 141
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.58 E-value=2.9 Score=31.53 Aligned_cols=39 Identities=23% Similarity=0.607 Sum_probs=21.6
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..|+.|..++... =+|..|..|-.. +.....||-|.+++
T Consensus 2 ~~CP~C~~~L~~~-------~~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-------GGHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEE-------TTEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEe-------CCEEECcccccc-ceecccCCCcccHH
Confidence 5799999887621 177788888665 33445699998776
No 142
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=45.20 E-value=33 Score=29.59 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=21.3
Q ss_pred CCCCCCCCCchhh---hHHHHHHHHHHHHHHHHHhhhhccccchh
Q 016747 114 RDCLPEEGQKWGF---LIWLLFSYCGLLCIACMSMGKWLTRRQAH 155 (383)
Q Consensus 114 ~~~lp~~~~~w~~---~i~li~~~~~ll~i~~~~~~~~~~rr~~~ 155 (383)
..||...+++-|| .+.++++ ++++.+.++++++++.+|++.
T Consensus 15 ~ecls~~~~psffsthm~tILia-IvVliiiiivli~lcssRKkK 58 (189)
T PF05568_consen 15 GECLSPVTPPSFFSTHMYTILIA-IVVLIIIIIVLIYLCSSRKKK 58 (189)
T ss_pred hhhcCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHH
Confidence 3588888777555 2223333 334444444555555555443
No 143
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=44.70 E-value=11 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=16.8
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHH
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEW 265 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~w 265 (383)
...|.+|...|..-.....- .||++||..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 36899999999743332222 49999999997654
No 144
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=44.22 E-value=11 Score=35.74 Aligned_cols=47 Identities=28% Similarity=0.587 Sum_probs=31.3
Q ss_pred CccccccccccCCCceeee----CCCCccchhhHHHHHh-c--------CCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL----PCAHNFHIECIDEWLR-L--------NVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l----pC~H~Fh~~Ci~~wl~-~--------~~~CP~CR~~v 279 (383)
.+|-+|.+++...+..+.. .|+-.+|..|+..-+. . ...||.|+.-.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999533332221 2778899999998433 1 12499998733
No 145
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.98 E-value=12 Score=27.80 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=8.8
Q ss_pred ccchhhHHHHHh
Q 016747 256 NFHIECIDEWLR 267 (383)
Q Consensus 256 ~Fh~~Ci~~wl~ 267 (383)
.||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 146
>PLN02189 cellulose synthase
Probab=43.76 E-value=28 Score=39.30 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=34.5
Q ss_pred CccccccccccCC--Cceee--eCCCCccchhhHHHHH-hcCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVG--NEVRG--LPCAHNFHIECIDEWL-RLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~--~~~~~--lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~v~~~~ 283 (383)
..|.||.++...+ .++.. -.|+--.|..|.+-=- +.++.||.|+......+
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 5899999997532 22322 2377779999984322 26678999998776443
No 147
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.50 E-value=17 Score=35.82 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=13.3
Q ss_pred HHhhhcceeeeEEEE---EEEEe
Q 016747 92 SLLLYPFLWAWTIIG---TLWFT 111 (383)
Q Consensus 92 ~~~l~~f~~~w~i~G---~~~~~ 111 (383)
.+.++.|.++|.|+| -+|++
T Consensus 237 IvRlILF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 237 IVRLILFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHHHHHHhCCCCceEec
Confidence 345556699999876 45554
No 148
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.04 E-value=9 Score=32.53 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.1
Q ss_pred CCCCcccccccc
Q 016747 230 TDCSECPICLEE 241 (383)
Q Consensus 230 ~~~~~C~IC~~~ 241 (383)
.++..|-||+..
T Consensus 63 ~ddatC~IC~KT 74 (169)
T KOG3799|consen 63 GDDATCGICHKT 74 (169)
T ss_pred CcCcchhhhhhc
Confidence 556799999754
No 149
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.33 E-value=23 Score=33.37 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCccccccccccCCCc-eeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
...|+|-.-+|...-. ....+|||+|-..-+.+. +...|++|.+.....
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 3579988777752222 344579999999988875 457899999876443
No 150
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.61 E-value=45 Score=24.02 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=30.9
Q ss_pred CccccccccccCCCceeeeCCCC--ccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAH--NFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H--~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|--|-.++..+.... .-|.+ .||.+|.+..| +..||.|-..+.
T Consensus 6 pnCE~C~~dLp~~s~~A-~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEA-YICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcc-eEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 35777888876544222 22544 59999999877 467999987664
No 151
>PLN02436 cellulose synthase A
Probab=40.13 E-value=35 Score=38.74 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=34.2
Q ss_pred CccccccccccCC--Cceee--eCCCCccchhhHHHHHh-cCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVG--NEVRG--LPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~--~~~~~--lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~~ 283 (383)
..|.||.++.... .++.. -.|+--.|..|.+-=-+ .++.||.|+..-...+
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 5899999997432 22322 23777799999843222 5678999998775443
No 152
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=39.98 E-value=31 Score=21.52 Aligned_cols=37 Identities=24% Similarity=0.575 Sum_probs=24.3
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
.|..|.+.+..++ .....=+..||..|. .|..|+.++
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcC
Confidence 3778888776432 222234778998884 688887665
No 153
>PLN02400 cellulose synthase
Probab=39.67 E-value=1.4e+02 Score=34.22 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=34.6
Q ss_pred CccccccccccCCC--cee--eeCCCCccchhhHHH-HHhcCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVGN--EVR--GLPCAHNFHIECIDE-WLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~~--~~~--~lpC~H~Fh~~Ci~~-wl~~~~~CP~CR~~v~~~~ 283 (383)
..|.||.++..... ++. .-.|+---|..|.+= .-+.++.||.||..-...+
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 58999999975432 232 234777799999732 1225677999998776554
No 154
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=39.29 E-value=9.9 Score=38.09 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=0.0
Q ss_pred eCCCCccchhhHHHHHhc---CCCCcccCCC
Q 016747 251 LPCAHNFHIECIDEWLRL---NVKCPRCRCS 278 (383)
Q Consensus 251 lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~ 278 (383)
+.|||++...=+..--.. ..+||+||..
T Consensus 307 l~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 307 LNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------
T ss_pred ccccceeeecccccccccccccccCCCcccc
No 155
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.24 E-value=52 Score=27.21 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=31.2
Q ss_pred CccccccccccCCC----------cee-eeCCCCccchhhHHHHHhcCCCCcccC
Q 016747 233 SECPICLEEFHVGN----------EVR-GLPCAHNFHIECIDEWLRLNVKCPRCR 276 (383)
Q Consensus 233 ~~C~IC~~~~~~~~----------~~~-~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 276 (383)
..|--|+..|.... ... --.|++.||.+|-.-+-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886321 011 234999999999766666667799995
No 156
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=37.07 E-value=82 Score=29.62 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=20.4
Q ss_pred ecCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhhhhcccc
Q 016747 112 SARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRR 152 (383)
Q Consensus 112 ~~~~~lp~~~~~w~~~i~li~~~~~ll~i~~~~~~~~~~rr 152 (383)
++....-.+.++|.+.+++++|+ ++.+-.++-+.+.||
T Consensus 212 sd~f~~y~n~q~wLwwi~~vlG~---ll~lr~~i~YikVrr 249 (262)
T KOG4812|consen 212 SDDFESYFNGQYWLWWIFLVLGL---LLFLRGFINYIKVRR 249 (262)
T ss_pred ccccccccccchHHHHHHHHHHH---HHHHHHHHhHHHHhh
Confidence 44445556667777766666663 333333444444444
No 157
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=35.88 E-value=28 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCCccccccccccCC--CceeeeCCCCccchhhHHHHHhcCC---CCcccCC
Q 016747 231 DCSECPICLEEFHVG--NEVRGLPCAHNFHIECIDEWLRLNV---KCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~--~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~ 277 (383)
+...|.+|...|..- ....-..|+|.+|..|-.. ..+. .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 457899999876432 2333445999999999543 2112 2777753
No 158
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.75 E-value=44 Score=38.00 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=34.6
Q ss_pred CccccccccccCCC--cee--eeCCCCccchhhHHH-HHhcCCCCcccCCCCCCCC
Q 016747 233 SECPICLEEFHVGN--EVR--GLPCAHNFHIECIDE-WLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 233 ~~C~IC~~~~~~~~--~~~--~lpC~H~Fh~~Ci~~-wl~~~~~CP~CR~~v~~~~ 283 (383)
..|.||.++..... ++. .-.|+---|..|.+= .-+.++.||.|+......+
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 58999999975432 222 234777799999842 2236778999998775443
No 159
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.44 E-value=30 Score=24.25 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=22.2
Q ss_pred CccccccccccCCCcee-eeCCCCccchhhHHHH
Q 016747 233 SECPICLEEFHVGNEVR-GLPCAHNFHIECIDEW 265 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~w 265 (383)
..|.+|...|....... --.||++||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 57899988876432222 2348999999997654
No 160
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.92 E-value=26 Score=22.77 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=9.9
Q ss_pred ccccccccccCCCc
Q 016747 234 ECPICLEEFHVGNE 247 (383)
Q Consensus 234 ~C~IC~~~~~~~~~ 247 (383)
+|+-|...|..+++
T Consensus 4 ~CP~C~~~f~v~~~ 17 (37)
T PF13719_consen 4 TCPNCQTRFRVPDD 17 (37)
T ss_pred ECCCCCceEEcCHH
Confidence 68888888775543
No 161
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=31.05 E-value=36 Score=23.70 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=26.3
Q ss_pred cccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
|.-|.+.+..++ .....-+..||..|. +|-.|+.++...
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEcccc--------ccCCCCCccCCC
Confidence 667777776332 222347788998884 799998877554
No 163
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=30.89 E-value=31 Score=23.55 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=26.5
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHh------cCCCCcccC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR------LNVKCPRCR 276 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~------~~~~CP~CR 276 (383)
.|.||.+.-..++.+.--.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3889988433222232234888899999876433 123488875
No 164
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=30.50 E-value=10 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=28.8
Q ss_pred ehhHHHHHHHHHHHHhhhcccccccCCCceeeeehhhH-HHHHHHHHHHhh
Q 016747 11 YDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDY-TTVFVFRLLMFV 60 (383)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~w~~~~~c~~p~~~W~~v~y-~~~~~~~~~~~~ 60 (383)
.=||.+++++|.+.+.++-++.. +.+..+++++.. +.+++.-+..|+
T Consensus 19 viGFiLSliLT~i~F~lv~~~~~---~~~~~~~~i~~lA~vQi~VqL~~FL 66 (109)
T PRK10582 19 MTGFILSIILTVIPFWMVMTGAA---SPAVILGTILAMAVVQILVHLVCFL 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC---ChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788999999999887766522 344555544333 444444555555
No 165
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=29.63 E-value=27 Score=22.58 Aligned_cols=14 Identities=29% Similarity=0.994 Sum_probs=9.8
Q ss_pred ccccccccccCCCc
Q 016747 234 ECPICLEEFHVGNE 247 (383)
Q Consensus 234 ~C~IC~~~~~~~~~ 247 (383)
+|+-|...|..+++
T Consensus 4 ~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 4 TCPNCQAKYEIDDE 17 (36)
T ss_pred ECCCCCCEEeCCHH
Confidence 68888888766543
No 166
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=10 Score=36.47 Aligned_cols=46 Identities=33% Similarity=0.551 Sum_probs=36.3
Q ss_pred CccccccccccCC---CceeeeC--------CCCccchhhHHHHHhc-CCCCcccCCC
Q 016747 233 SECPICLEEFHVG---NEVRGLP--------CAHNFHIECIDEWLRL-NVKCPRCRCS 278 (383)
Q Consensus 233 ~~C~IC~~~~~~~---~~~~~lp--------C~H~Fh~~Ci~~wl~~-~~~CP~CR~~ 278 (383)
..|.||...+... ..++.+. |||..|..|+..-+.+ ...||.||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 5799999998732 3456667 9999999999998763 3579999864
No 167
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=29.53 E-value=40 Score=22.59 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccc
Q 016747 127 LIWLLFSYCGLLCIACMSMGKWLTRR 152 (383)
Q Consensus 127 ~i~li~~~~~ll~i~~~~~~~~~~rr 152 (383)
++|.+++..++.+++.++..+|..|+
T Consensus 12 lVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 12 LVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665556666666666665554
No 168
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.71 E-value=54 Score=27.57 Aligned_cols=7 Identities=14% Similarity=0.339 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 016747 130 LLFSYCG 136 (383)
Q Consensus 130 li~~~~~ 136 (383)
+++|+++
T Consensus 73 v~aGvIg 79 (122)
T PF01102_consen 73 VMAGVIG 79 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334333
No 169
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.30 E-value=69 Score=36.35 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=34.5
Q ss_pred CCccccccccccCCC--cee--eeCCCCccchhhHHHHH-hcCCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGN--EVR--GLPCAHNFHIECIDEWL-RLNVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~--~~~--~lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~v~~~ 282 (383)
...|.||.++...+. ++. .-.|+--.|..|.+-=. +.++.||.|+......
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~ 70 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRH 70 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 368999999975432 222 23477779999984322 2667899999877544
No 170
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=28.06 E-value=1.4e+02 Score=29.43 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=18.2
Q ss_pred eeCCCCccch-hhHHHHHh---cCCCCcccCCCCCCCC
Q 016747 250 GLPCAHNFHI-ECIDEWLR---LNVKCPRCRCSVFPNL 283 (383)
Q Consensus 250 ~lpC~H~Fh~-~Ci~~wl~---~~~~CP~CR~~v~~~~ 283 (383)
.|-|+|.+|. .|... =+ ....||.|++--.+.+
T Consensus 220 ALIC~~C~~HNGla~~-ee~~yi~F~C~~Cn~LN~~~k 256 (328)
T KOG2846|consen 220 ALICSQCHHHNGLARK-EEYEYITFRCPHCNALNPAKK 256 (328)
T ss_pred hhcchhhccccCcCCh-hhcCceEEECccccccCCCcC
Confidence 3557776544 35433 11 2234999987665543
No 171
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=27.87 E-value=52 Score=32.11 Aligned_cols=51 Identities=24% Similarity=0.477 Sum_probs=33.1
Q ss_pred CCccccccccccC-----CC-----------ceeeeCCCCccchhhHHHHHh---c------CCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHV-----GN-----------EVRGLPCAHNFHIECIDEWLR---L------NVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~-----~~-----------~~~~lpC~H~Fh~~Ci~~wl~---~------~~~CP~CR~~v~~~ 282 (383)
+.+|++|+..=.. +- .-.--||||+.-+.-..=|-+ . +..||.|-..+...
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 4689999875210 10 112358999888888888865 1 33599998766443
No 172
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=27.60 E-value=44 Score=32.56 Aligned_cols=40 Identities=30% Similarity=0.709 Sum_probs=24.6
Q ss_pred CccccccccccCCC-----------ceeeeCCCCc--cchhhHHHHHh------cCCCCcccCC
Q 016747 233 SECPICLEEFHVGN-----------EVRGLPCAHN--FHIECIDEWLR------LNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~-----------~~~~lpC~H~--Fh~~Ci~~wl~------~~~~CP~CR~ 277 (383)
..|++=+..+..+. .-+.|.|||+ +|. |=. +...||+||.
T Consensus 291 PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~-----WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHN-----WGVRENTGQRERECPMCRV 349 (429)
T ss_pred CCCCcccceeecccccccccccccCCeEEEeccccccccc-----cccccccCcccCcCCeeee
Confidence 56887776653221 2356889996 554 522 2345999985
No 173
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.04 E-value=41 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=6.9
Q ss_pred cCCCCcccCC
Q 016747 268 LNVKCPRCRC 277 (383)
Q Consensus 268 ~~~~CP~CR~ 277 (383)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3447999965
No 174
>PF15091 DUF4554: Domain of unknown function (DUF4554)
Probab=26.95 E-value=21 Score=35.58 Aligned_cols=14 Identities=57% Similarity=1.381 Sum_probs=12.6
Q ss_pred hhhcccccccCCCc
Q 016747 26 VAINWKRYHLCTYP 39 (383)
Q Consensus 26 ~~~~w~~~~~c~~p 39 (383)
-++|||+||.|.+|
T Consensus 157 ~~idWkkyhL~~vp 170 (458)
T PF15091_consen 157 YFIDWKKYHLCMVP 170 (458)
T ss_pred hhccHHhhceeecc
Confidence 45799999999999
No 175
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=25.19 E-value=39 Score=31.48 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=10.6
Q ss_pred HhhhcceeeeEEE---EEEEEe
Q 016747 93 LLLYPFLWAWTII---GTLWFT 111 (383)
Q Consensus 93 ~~l~~f~~~w~i~---G~~~~~ 111 (383)
+.+..|+++|.++ .-.|++
T Consensus 159 vRlilf~i~w~~~~g~~~fWlf 180 (224)
T PF03839_consen 159 VRLILFLITWFFTGGKHGFWLF 180 (224)
T ss_pred HHHHHHHHHHHHhcCCCCEEeC
Confidence 3334457777776 235555
No 176
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=24.74 E-value=42 Score=35.43 Aligned_cols=36 Identities=33% Similarity=0.645 Sum_probs=24.5
Q ss_pred CCCCccccccccccCC--C--------ceeeeCCCCccchhhHHHH
Q 016747 230 TDCSECPICLEEFHVG--N--------EVRGLPCAHNFHIECIDEW 265 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~--~--------~~~~lpC~H~Fh~~Ci~~w 265 (383)
+....|+||.|.|..- + +.+.+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 4456899999998631 0 1233435888999998764
No 177
>PLN02195 cellulose synthase A
Probab=24.68 E-value=82 Score=35.54 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=33.7
Q ss_pred CCccccccccccCCC--ce--eeeCCCCccchhhHHHHH-hcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGN--EV--RGLPCAHNFHIECIDEWL-RLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~--~~--~~lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~v~ 280 (383)
...|.||.++...+. ++ ..-.|+---|+.|.+==- +.++.||.|+..-.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 358999999875432 22 223588889999984222 25677999998775
No 178
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.39 E-value=25 Score=33.83 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=0.0
Q ss_pred ccchhhHH
Q 016747 175 IRVPEWAF 182 (383)
Q Consensus 175 ~~~p~~~~ 182 (383)
.++-.|.|
T Consensus 118 LaL~vW~Y 125 (381)
T PF05297_consen 118 LALGVWFY 125 (381)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444544
No 179
>PRK12495 hypothetical protein; Provisional
Probab=23.78 E-value=3.3e+02 Score=25.31 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.0
Q ss_pred CCcccCCCCCC
Q 016747 271 KCPRCRCSVFP 281 (383)
Q Consensus 271 ~CP~CR~~v~~ 281 (383)
.||.|...+..
T Consensus 60 ~Cp~CQ~~~~~ 70 (226)
T PRK12495 60 FCPTCQQPVTE 70 (226)
T ss_pred ECCCCCCcccc
Confidence 49999876643
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.58 E-value=47 Score=31.08 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=17.5
Q ss_pred cchhhHHHHHhcCCCCcccCCCCC
Q 016747 257 FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 257 Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
-|.+|-...-+....||+|+++-.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 466776665556778999998664
No 181
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.51 E-value=25 Score=23.48 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=15.1
Q ss_pred eCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 251 LPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 251 lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
..|||.|-...-..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 357777765431111 23456999987
No 182
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=23.48 E-value=50 Score=23.23 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=6.3
Q ss_pred hcCCCCccc
Q 016747 267 RLNVKCPRC 275 (383)
Q Consensus 267 ~~~~~CP~C 275 (383)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 455679988
No 183
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.11 E-value=60 Score=34.57 Aligned_cols=38 Identities=26% Similarity=0.732 Sum_probs=24.7
Q ss_pred HHHHHhhhccccc---ccCCCc------eeeeehhhHHHHHHHHHHH
Q 016747 21 TSVIIVAINWKRY---HLCTYP------LHIWIVVDYTTVFVFRLLM 58 (383)
Q Consensus 21 ~~~~~~~~~w~~~---~~c~~p------~~~W~~v~y~~~~~~~~~~ 58 (383)
.+++-++.|||-. ..-++| +|+|++++|..=+++.+=|
T Consensus 232 L~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDm 278 (815)
T KOG0499|consen 232 LLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDM 278 (815)
T ss_pred HHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHH
Confidence 3455667899832 122455 8999999997766664433
No 184
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.97 E-value=55 Score=35.36 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=31.2
Q ss_pred ccccccccccCCCceeeeCCCC-ccchhhHHHHHh--c----CCCCcccCCCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAH-NFHIECIDEWLR--L----NVKCPRCRCSVF 280 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~--~----~~~CP~CR~~v~ 280 (383)
.|+||-..+. -...-.||| .-|..|...... . ...||.||..+.
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5899987765 444456999 699999877643 2 345799988663
No 185
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=22.72 E-value=46 Score=30.95 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=17.1
Q ss_pred cchhhHHHHHhcCCCCcccCCCCC
Q 016747 257 FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 257 Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
-|.+|-.+.-+....||+|+.+-.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 456666665556778999997664
No 186
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.99 E-value=1.1e+02 Score=20.69 Aligned_cols=21 Identities=19% Similarity=0.626 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 016747 124 WGFLIWLLFSYCGLLCIACMS 144 (383)
Q Consensus 124 w~~~i~li~~~~~ll~i~~~~ 144 (383)
+.+.+|..++...++++..+.
T Consensus 4 y~~yVW~sYg~t~l~l~~li~ 24 (45)
T TIGR03141 4 YAFYVWLAYGITALVLAGLIL 24 (45)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 344566555544333333333
No 187
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.89 E-value=1.1e+02 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccch
Q 016747 127 LIWLLFSYCGLLCIACMSMGKWLTRRQA 154 (383)
Q Consensus 127 ~i~li~~~~~ll~i~~~~~~~~~~rr~~ 154 (383)
++++++|.++-++.++ +++.|+.||++
T Consensus 66 i~~Ii~gv~aGvIg~I-lli~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII-LLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHH-HHHHHHHHHHh
Confidence 6667777654333333 33344444433
No 188
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=21.61 E-value=79 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 016747 124 WGFLIWLLFSYCGLLCIACM 143 (383)
Q Consensus 124 w~~~i~li~~~~~ll~i~~~ 143 (383)
|.+++++++|.+.++.++-+
T Consensus 2 Wl~V~~iilg~~ll~~Ligi 21 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGI 21 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHH
Confidence 77788877776555544433
No 189
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=20.83 E-value=24 Score=25.10 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=14.1
Q ss_pred eeee-CCCCccchhhHHHH
Q 016747 248 VRGL-PCAHNFHIECIDEW 265 (383)
Q Consensus 248 ~~~l-pC~H~Fh~~Ci~~w 265 (383)
...- .|+|.||..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3444 48999999998887
No 190
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.78 E-value=1.6e+02 Score=29.32 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=19.7
Q ss_pred cchhhHHHHHHHHHhhhcceeeeEEEEEEEEe
Q 016747 80 RFCGRVVVLSILSLLLYPFLWAWTIIGTLWFT 111 (383)
Q Consensus 80 ~~~~~~~~l~~l~~~l~~f~~~w~i~G~~~~~ 111 (383)
..++-++++++++++|||.---|.=.|.+++.
T Consensus 191 ~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~s 222 (372)
T KOG2927|consen 191 QVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLS 222 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCcHHHhcceeeee
Confidence 44555667777888888755444445544443
No 191
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.75 E-value=59 Score=23.68 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=12.1
Q ss_pred cCCCCcccCCCCCCC
Q 016747 268 LNVKCPRCRCSVFPN 282 (383)
Q Consensus 268 ~~~~CP~CR~~v~~~ 282 (383)
.|+.||.|-.+++++
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 567899998888765
No 192
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.58 E-value=51 Score=28.81 Aligned_cols=45 Identities=20% Similarity=0.491 Sum_probs=29.1
Q ss_pred ccccccccCCCceeeeC-CCCccchhhHHHHHhcCCCCcccCCCCCCCC
Q 016747 236 PICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 283 (383)
Q Consensus 236 ~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~~ 283 (383)
.||+.--...+....-| =.+.||..|-.+-+. .||.|..+|...-
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDY 53 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCce
Confidence 46665443333333333 356799999888665 5999999996653
No 193
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=45 Score=26.42 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=10.9
Q ss_pred ccchhhHHHHHh
Q 016747 256 NFHIECIDEWLR 267 (383)
Q Consensus 256 ~Fh~~Ci~~wl~ 267 (383)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
Done!