Query 016747
Match_columns 383
No_of_seqs 393 out of 2097
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.2E-14 4E-19 115.1 3.9 70 212-281 17-89 (91)
2 1x4j_A Ring finger protein 38; 99.4 4.4E-14 1.5E-18 107.4 4.4 65 218-282 7-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 1.3E-13 4.4E-18 98.2 4.6 50 231-280 4-54 (55)
4 2ect_A Ring finger protein 126 99.4 3.2E-13 1.1E-17 103.3 6.7 53 230-282 13-65 (78)
5 2kiz_A E3 ubiquitin-protein li 99.4 3.1E-13 1E-17 100.9 5.9 53 230-282 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.4 4.1E-13 1.4E-17 101.6 5.9 52 231-282 14-65 (74)
7 2ecm_A Ring finger and CHY zin 99.3 2.2E-12 7.5E-17 91.7 4.9 50 231-280 4-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.3 2.1E-12 7.3E-17 99.8 4.4 49 232-280 15-75 (81)
9 2ea6_A Ring finger protein 4; 99.3 2.2E-12 7.4E-17 95.9 4.2 52 230-281 13-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.3 2.1E-12 7E-17 96.7 3.7 53 230-282 8-64 (71)
11 2d8t_A Dactylidin, ring finger 99.3 2.8E-12 9.5E-17 96.4 4.3 49 230-281 13-61 (71)
12 2djb_A Polycomb group ring fin 99.2 5.8E-12 2E-16 94.9 5.3 49 231-282 14-63 (72)
13 2xeu_A Ring finger protein 4; 99.2 4.8E-12 1.7E-16 92.6 3.5 51 232-282 3-57 (64)
14 2ysl_A Tripartite motif-contai 99.2 1.2E-11 4.3E-16 93.0 5.7 50 230-282 18-70 (73)
15 2csy_A Zinc finger protein 183 99.2 8.4E-12 2.9E-16 96.1 4.7 48 230-280 13-60 (81)
16 1v87_A Deltex protein 2; ring- 99.2 1.7E-11 5.7E-16 100.6 6.7 50 232-281 25-94 (114)
17 1chc_A Equine herpes virus-1 r 99.2 9.6E-12 3.3E-16 92.4 4.5 48 231-280 4-51 (68)
18 2ct2_A Tripartite motif protei 99.2 2.5E-11 8.5E-16 94.6 6.8 53 230-282 13-69 (88)
19 2ecy_A TNF receptor-associated 99.2 1.1E-11 3.8E-16 91.6 4.6 50 230-282 13-63 (66)
20 2ecn_A Ring finger protein 141 99.2 5.2E-12 1.8E-16 94.4 2.7 48 231-282 14-61 (70)
21 3dpl_R Ring-box protein 1; ubi 99.2 1.8E-11 6.2E-16 99.4 5.1 49 231-279 36-99 (106)
22 2yur_A Retinoblastoma-binding 99.2 2E-11 6.9E-16 92.5 5.0 48 231-281 14-64 (74)
23 4ayc_A E3 ubiquitin-protein li 99.2 8.8E-12 3E-16 106.0 3.1 47 232-281 53-99 (138)
24 1t1h_A Gspef-atpub14, armadill 99.1 2.9E-11 9.8E-16 92.3 5.1 49 230-281 6-55 (78)
25 2ysj_A Tripartite motif-contai 99.1 5.7E-11 1.9E-15 86.9 5.1 43 230-275 18-63 (63)
26 2d8s_A Cellular modulator of i 99.1 5.5E-11 1.9E-15 91.6 5.1 53 229-282 12-71 (80)
27 3ztg_A E3 ubiquitin-protein li 99.1 6.4E-11 2.2E-15 93.3 5.2 48 230-280 11-61 (92)
28 2egp_A Tripartite motif-contai 99.1 2.1E-11 7E-16 93.2 2.1 49 230-281 10-65 (79)
29 2ecv_A Tripartite motif-contai 99.1 8.2E-11 2.8E-15 90.8 5.4 48 231-281 18-71 (85)
30 2ecw_A Tripartite motif-contai 99.1 7.2E-11 2.5E-15 91.1 5.1 49 231-282 18-72 (85)
31 3lrq_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 97.0 2.7 46 233-281 23-70 (100)
32 2ckl_A Polycomb group ring fin 99.1 1.1E-10 3.6E-15 94.9 4.8 48 232-282 15-63 (108)
33 3fl2_A E3 ubiquitin-protein li 99.0 8.3E-11 2.8E-15 98.0 3.9 47 232-281 52-99 (124)
34 2ecj_A Tripartite motif-contai 99.0 1.2E-10 4.2E-15 83.4 4.0 43 230-275 13-58 (58)
35 2y43_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 93.3 4.1 46 233-281 23-69 (99)
36 4a0k_B E3 ubiquitin-protein li 99.0 3.8E-11 1.3E-15 99.0 0.5 50 231-280 47-111 (117)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 1.7E-10 5.8E-15 96.5 4.4 52 231-282 6-61 (133)
38 1g25_A CDK-activating kinase a 99.0 2.2E-10 7.5E-15 84.3 4.0 51 232-282 3-56 (65)
39 3l11_A E3 ubiquitin-protein li 99.0 6.9E-11 2.4E-15 97.1 0.5 46 232-280 15-61 (115)
40 1bor_A Transcription factor PM 99.0 2.1E-10 7.1E-15 82.1 2.9 47 230-282 4-50 (56)
41 1jm7_A BRCA1, breast cancer ty 99.0 3.4E-10 1.2E-14 92.2 4.0 46 233-281 22-70 (112)
42 1z6u_A NP95-like ring finger p 98.9 4.1E-10 1.4E-14 97.1 4.0 48 232-282 78-126 (150)
43 3hct_A TNF receptor-associated 98.9 4.2E-10 1.4E-14 93.0 3.6 50 230-282 16-66 (118)
44 2ct0_A Non-SMC element 1 homol 98.9 9.3E-10 3.2E-14 83.2 5.1 49 230-280 13-63 (74)
45 2ckl_B Ubiquitin ligase protei 98.9 4.9E-10 1.7E-14 98.0 4.1 48 232-282 54-103 (165)
46 2kr4_A Ubiquitin conjugation f 98.9 6.9E-10 2.4E-14 86.4 4.3 48 231-281 13-60 (85)
47 2vje_A E3 ubiquitin-protein li 98.9 5.5E-10 1.9E-14 82.2 3.1 47 231-280 7-56 (64)
48 2kre_A Ubiquitin conjugation f 98.9 1E-09 3.6E-14 88.0 5.0 48 231-281 28-75 (100)
49 4ap4_A E3 ubiquitin ligase RNF 98.9 5.4E-10 1.9E-14 93.3 2.9 53 230-282 70-126 (133)
50 1rmd_A RAG1; V(D)J recombinati 98.9 3.9E-10 1.3E-14 92.7 1.4 46 233-281 24-70 (116)
51 1wgm_A Ubiquitin conjugation f 98.9 1.8E-09 6.1E-14 86.3 5.1 48 231-281 21-69 (98)
52 2vje_B MDM4 protein; proto-onc 98.9 9E-10 3.1E-14 80.8 2.8 47 231-280 6-55 (63)
53 3knv_A TNF receptor-associated 98.8 6.9E-10 2.4E-14 94.7 2.3 50 229-281 28-78 (141)
54 1e4u_A Transcriptional repress 98.8 3E-09 1E-13 81.4 5.5 52 230-282 9-63 (78)
55 2y1n_A E3 ubiquitin-protein li 98.8 1.8E-09 6.3E-14 105.9 4.7 47 232-281 332-379 (389)
56 1jm7_B BARD1, BRCA1-associated 98.8 4.3E-09 1.5E-13 86.7 5.7 44 233-281 23-67 (117)
57 2c2l_A CHIP, carboxy terminus 98.8 6.2E-09 2.1E-13 97.8 7.1 49 230-281 206-255 (281)
58 4ic3_A E3 ubiquitin-protein li 98.8 1.5E-09 5.2E-14 82.1 1.7 42 233-281 25-67 (74)
59 2ea5_A Cell growth regulator w 98.7 1.3E-08 4.3E-13 75.8 4.6 47 228-281 11-58 (68)
60 2f42_A STIP1 homology and U-bo 98.7 1.3E-08 4.6E-13 89.8 5.2 49 230-281 104-153 (179)
61 3hcs_A TNF receptor-associated 98.6 1.4E-08 4.7E-13 89.0 3.5 50 230-282 16-66 (170)
62 2yu4_A E3 SUMO-protein ligase 98.6 1.5E-08 5.1E-13 80.2 3.3 45 231-278 6-59 (94)
63 2ecg_A Baculoviral IAP repeat- 98.6 2.1E-08 7.2E-13 75.9 3.3 42 233-281 26-68 (75)
64 2yho_A E3 ubiquitin-protein li 98.5 5.3E-08 1.8E-12 74.5 3.3 42 233-281 19-61 (79)
65 3k1l_B Fancl; UBC, ring, RWD, 98.5 3.7E-08 1.2E-12 94.3 2.8 52 230-281 306-373 (381)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.3 3.6E-07 1.2E-11 66.1 4.1 48 230-280 4-58 (60)
67 3t6p_A Baculoviral IAP repeat- 98.3 1.4E-07 4.9E-12 91.7 2.6 43 232-281 295-338 (345)
68 1wim_A KIAA0161 protein; ring 98.3 1.8E-07 6.3E-12 73.7 2.2 47 232-278 5-61 (94)
69 2bay_A PRE-mRNA splicing facto 98.3 2.8E-07 9.7E-12 66.9 2.6 46 233-281 4-50 (61)
70 3htk_C E3 SUMO-protein ligase 98.2 5.1E-07 1.7E-11 83.7 3.1 46 232-280 181-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.0 4.5E-06 1.5E-10 65.7 3.6 46 234-281 3-49 (101)
72 3nw0_A Non-structural maintena 97.3 0.00012 4E-09 67.5 3.6 48 232-281 180-229 (238)
73 2ko5_A Ring finger protein Z; 95.3 0.012 4.1E-07 45.5 3.3 50 232-286 28-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.063 2.2E-06 41.9 2.3 32 232-265 3-36 (101)
75 2lri_C Autoimmune regulator; Z 90.6 0.24 8.2E-06 35.9 3.8 47 230-279 10-60 (66)
76 3m62_A Ubiquitin conjugation f 81.5 1.2 4.1E-05 48.3 4.7 48 231-281 890-938 (968)
77 1wil_A KIAA1045 protein; ring 81.5 1.4 4.6E-05 33.4 3.6 31 231-265 14-47 (89)
78 2k16_A Transcription initiatio 81.4 0.34 1.2E-05 35.7 0.3 50 230-280 16-70 (75)
79 1mm2_A MI2-beta; PHD, zinc fin 78.2 1 3.5E-05 31.8 2.0 47 230-279 7-57 (61)
80 1we9_A PHD finger family prote 75.8 0.94 3.2E-05 32.2 1.2 49 230-278 4-58 (64)
81 1f62_A Transcription factor WS 75.5 1.5 5.1E-05 29.6 2.1 44 234-277 2-49 (51)
82 3o36_A Transcription intermedi 74.4 2.8 9.5E-05 36.3 4.2 47 231-280 3-53 (184)
83 1zbd_B Rabphilin-3A; G protein 72.8 2.4 8.3E-05 35.0 3.2 48 230-277 53-106 (134)
84 3u5n_A E3 ubiquitin-protein li 72.3 1.2 4.2E-05 39.4 1.4 47 230-279 5-55 (207)
85 2yql_A PHD finger protein 21A; 72.2 0.75 2.6E-05 31.9 -0.0 45 230-277 7-55 (56)
86 2l5u_A Chromodomain-helicase-D 72.1 1.6 5.4E-05 30.8 1.7 44 231-277 10-57 (61)
87 1fp0_A KAP-1 corepressor; PHD 72.0 3.2 0.00011 31.7 3.5 46 230-278 23-72 (88)
88 3lqh_A Histone-lysine N-methyl 71.0 1.8 6.1E-05 37.8 2.1 48 233-280 3-65 (183)
89 2cs3_A Protein C14ORF4, MY039 66.9 3.8 0.00013 30.6 2.8 34 232-268 15-52 (93)
90 1weo_A Cellulose synthase, cat 66.8 22 0.00074 27.1 7.0 50 233-282 17-71 (93)
91 2ysm_A Myeloid/lymphoid or mix 60.1 4.1 0.00014 32.1 2.0 46 231-276 6-55 (111)
92 1wen_A Inhibitor of growth fam 60.0 9.8 0.00033 27.6 4.0 41 232-279 16-66 (71)
93 2yt5_A Metal-response element- 58.4 2.4 8.1E-05 30.2 0.3 50 230-279 4-62 (66)
94 3v43_A Histone acetyltransfera 57.9 4.1 0.00014 32.3 1.7 45 233-277 62-111 (112)
95 2klu_A T-cell surface glycopro 57.1 17 0.00059 26.0 4.6 9 147-155 33-41 (70)
96 2puy_A PHD finger protein 21A; 57.0 2.8 9.5E-05 29.3 0.5 45 231-278 4-52 (60)
97 2fiy_A Protein FDHE homolog; F 56.8 5.2 0.00018 37.8 2.5 63 213-278 164-231 (309)
98 2ro1_A Transcription intermedi 56.1 3.7 0.00013 35.8 1.2 43 233-278 3-49 (189)
99 2lv9_A Histone-lysine N-methyl 55.9 6.6 0.00023 30.4 2.6 44 233-277 29-75 (98)
100 2e6r_A Jumonji/ARID domain-con 55.1 2.5 8.5E-05 32.5 -0.0 47 231-277 15-65 (92)
101 1weu_A Inhibitor of growth fam 54.9 12 0.0004 28.7 3.8 44 232-279 36-86 (91)
102 1xwh_A Autoimmune regulator; P 54.7 3.1 0.00011 29.7 0.4 44 231-277 7-54 (66)
103 1z2q_A LM5-1; membrane protein 52.2 10 0.00034 28.4 3.0 34 232-265 21-55 (84)
104 2l2t_A Receptor tyrosine-prote 52.0 25 0.00085 23.1 4.4 10 132-141 18-27 (44)
105 2ks1_B Epidermal growth factor 51.5 21 0.00071 23.4 4.0 12 130-141 17-28 (44)
106 1y02_A CARP2, FYVE-ring finger 51.4 2.4 8.4E-05 34.3 -0.6 45 233-277 20-65 (120)
107 4gne_A Histone-lysine N-methyl 51.1 14 0.00048 29.1 3.8 48 228-281 11-65 (107)
108 2yw8_A RUN and FYVE domain-con 49.4 11 0.00036 28.1 2.7 33 232-264 19-52 (82)
109 3t7l_A Zinc finger FYVE domain 48.6 9.6 0.00033 28.9 2.4 33 233-265 21-54 (90)
110 1joc_A EEA1, early endosomal a 48.2 9.4 0.00032 30.9 2.4 32 233-264 70-102 (125)
111 1wfk_A Zinc finger, FYVE domai 47.6 14 0.00048 27.9 3.2 34 231-264 8-42 (88)
112 1x4u_A Zinc finger, FYVE domai 47.6 12 0.00042 27.9 2.8 32 232-263 14-46 (84)
113 1vfy_A Phosphatidylinositol-3- 47.1 12 0.00041 27.1 2.7 31 233-263 12-43 (73)
114 1z60_A TFIIH basal transcripti 47.0 7.9 0.00027 27.2 1.5 42 233-275 16-58 (59)
115 3ask_A E3 ubiquitin-protein li 45.6 6.6 0.00023 35.3 1.2 44 234-277 176-224 (226)
116 2e6s_A E3 ubiquitin-protein li 45.2 6.8 0.00023 29.0 1.0 44 234-277 28-76 (77)
117 1dvp_A HRS, hepatocyte growth 44.6 11 0.00037 33.4 2.5 33 232-264 161-194 (220)
118 3zyq_A Hepatocyte growth facto 44.2 16 0.00056 32.5 3.6 35 231-265 163-198 (226)
119 3shb_A E3 ubiquitin-protein li 43.9 4.8 0.00016 29.9 -0.0 41 234-277 28-76 (77)
120 1wep_A PHF8; structural genomi 43.3 20 0.00067 26.3 3.4 46 233-279 13-64 (79)
121 3asl_A E3 ubiquitin-protein li 41.5 7.1 0.00024 28.2 0.6 41 234-277 20-68 (70)
122 2ku3_A Bromodomain-containing 41.2 9.1 0.00031 27.8 1.1 48 230-277 14-65 (71)
123 3i2d_A E3 SUMO-protein ligase 41.1 21 0.00072 34.4 4.0 46 233-281 250-300 (371)
124 2kgg_A Histone demethylase jar 40.1 13 0.00045 25.0 1.8 43 234-276 4-52 (52)
125 3v43_A Histone acetyltransfera 39.6 33 0.0011 26.9 4.4 32 232-263 5-42 (112)
126 4fo9_A E3 SUMO-protein ligase 39.5 22 0.00074 34.2 3.8 46 233-281 216-266 (360)
127 2d8v_A Zinc finger FYVE domain 39.2 21 0.00072 25.5 2.7 31 231-265 7-38 (67)
128 2lbm_A Transcriptional regulat 38.6 32 0.0011 28.5 4.3 45 230-277 61-116 (142)
129 1wem_A Death associated transc 38.4 12 0.00042 27.2 1.5 45 233-278 17-70 (76)
130 1wev_A Riken cDNA 1110020M19; 36.6 5.4 0.00018 30.3 -0.8 48 232-279 16-73 (88)
131 2l43_A N-teminal domain from h 36.5 16 0.00054 27.6 1.9 48 231-279 24-76 (88)
132 2o35_A Hypothetical protein DU 35.5 13 0.00043 28.9 1.2 12 256-267 42-53 (105)
133 3fyb_A Protein of unknown func 35.5 13 0.00043 28.8 1.2 12 256-267 41-52 (104)
134 2gmg_A Hypothetical protein PF 35.2 8.1 0.00028 30.4 0.0 26 249-279 69-94 (105)
135 3c6w_A P28ING5, inhibitor of g 35.0 8.7 0.0003 26.8 0.2 40 233-277 10-57 (59)
136 3o70_A PHD finger protein 13; 34.5 12 0.00039 26.9 0.8 44 232-277 19-66 (68)
137 2vnf_A ING 4, P29ING4, inhibit 34.2 8.7 0.0003 26.8 0.1 38 233-277 11-58 (60)
138 2l8s_A Integrin alpha-1; trans 33.8 52 0.0018 22.5 3.9 24 118-141 4-27 (54)
139 2zet_C Melanophilin; complex, 33.7 18 0.00061 30.4 1.9 46 231-277 67-116 (153)
140 2dar_A PDZ and LIM domain prot 33.2 33 0.0011 25.4 3.2 39 232-281 25-63 (90)
141 2ri7_A Nucleosome-remodeling f 32.9 9 0.00031 32.5 -0.0 45 232-277 8-58 (174)
142 3mpx_A FYVE, rhogef and PH dom 32.4 9.4 0.00032 37.1 0.0 48 232-279 375-430 (434)
143 2vpb_A Hpygo1, pygopus homolog 31.4 31 0.0011 24.4 2.6 32 232-263 8-41 (65)
144 2ysm_A Myeloid/lymphoid or mix 30.9 9.4 0.00032 29.9 -0.2 45 234-278 56-104 (111)
145 3ql9_A Transcriptional regulat 29.9 50 0.0017 26.8 3.9 45 230-277 55-110 (129)
146 1iml_A CRIP, cysteine rich int 29.6 26 0.00088 24.9 2.0 36 235-280 3-38 (76)
147 2cor_A Pinch protein; LIM doma 29.6 53 0.0018 23.6 3.8 39 232-281 15-53 (79)
148 2cu8_A Cysteine-rich protein 2 29.2 38 0.0013 24.0 2.9 39 233-281 10-48 (76)
149 2dj7_A Actin-binding LIM prote 28.5 57 0.0019 23.6 3.8 39 232-280 15-53 (80)
150 1x62_A C-terminal LIM domain p 28.3 39 0.0013 24.2 2.9 37 232-279 15-51 (79)
151 1x64_A Alpha-actinin-2 associa 27.6 53 0.0018 24.1 3.6 39 232-281 25-63 (89)
152 1wew_A DNA-binding family prot 27.0 22 0.00076 26.0 1.3 45 233-278 17-72 (78)
153 2xb1_A Pygopus homolog 2, B-ce 26.9 32 0.0011 26.7 2.3 47 233-279 4-62 (105)
154 1x4l_A Skeletal muscle LIM-pro 25.2 53 0.0018 22.9 3.0 40 233-280 6-46 (72)
155 2d8x_A Protein pinch; LIM doma 25.2 52 0.0018 22.7 3.0 38 233-281 6-43 (70)
156 2d8z_A Four and A half LIM dom 25.1 50 0.0017 22.8 2.9 37 233-280 6-42 (70)
157 2kwj_A Zinc finger protein DPF 25.1 12 0.0004 29.7 -0.7 44 234-277 60-107 (114)
158 2jne_A Hypothetical protein YF 24.9 7.4 0.00025 30.1 -1.8 39 233-279 33-71 (101)
159 1x63_A Skeletal muscle LIM-pro 24.0 73 0.0025 22.7 3.7 40 233-281 16-55 (82)
160 1nyp_A Pinch protein; LIM doma 23.9 44 0.0015 22.9 2.3 38 233-281 6-43 (66)
161 1wyh_A SLIM 2, skeletal muscle 23.4 66 0.0023 22.2 3.3 40 233-281 6-45 (72)
162 2xjy_A Rhombotin-2; oncoprotei 23.4 52 0.0018 25.9 3.0 51 231-281 28-78 (131)
163 2co8_A NEDD9 interacting prote 23.2 93 0.0032 22.4 4.1 40 232-281 15-54 (82)
164 2jmo_A Parkin; IBR, E3 ligase, 22.7 10 0.00036 28.0 -1.3 19 252-272 55-73 (80)
165 2jwa_A Receptor tyrosine-prote 22.7 1E+02 0.0035 20.1 3.7 25 127-152 14-38 (44)
166 3kv5_D JMJC domain-containing 22.6 18 0.00063 36.2 0.1 46 234-279 38-89 (488)
167 1x4k_A Skeletal muscle LIM-pro 22.2 76 0.0026 21.9 3.4 40 233-281 6-45 (72)
168 1m3v_A FLIN4, fusion of the LI 21.9 69 0.0024 25.1 3.4 50 232-281 32-81 (122)
169 1wig_A KIAA1808 protein; LIM d 21.8 54 0.0018 23.1 2.5 37 233-280 6-42 (73)
170 2jmi_A Protein YNG1, ING1 homo 21.5 25 0.00087 26.7 0.6 41 231-276 25-74 (90)
171 1g47_A Pinch protein; LIM doma 21.0 99 0.0034 21.6 3.9 40 233-281 12-51 (77)
172 2knc_A Integrin alpha-IIB; tra 20.7 1.2E+02 0.004 20.8 3.8 20 121-140 10-29 (54)
173 2klu_A T-cell surface glycopro 20.4 89 0.003 22.3 3.2 36 124-160 7-42 (70)
174 1x68_A FHL5 protein; four-and- 20.4 60 0.0021 22.9 2.5 40 233-280 6-46 (76)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=115.06 Aligned_cols=70 Identities=36% Similarity=0.780 Sum_probs=58.5
Q ss_pred HHHHHHHhcCccccccCC---CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 212 AVEALIQELPKFRLKAVP---TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 212 ~~~~~~~~lp~~~~~~~~---~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+.++.++.+|........ .++..|+||++.+..++.++.+||||.||..||.+|+..+.+||+||..+.+
T Consensus 17 ~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 17 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 344567888887765533 3456899999999988889999999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=107.44 Aligned_cols=65 Identities=35% Similarity=0.913 Sum_probs=53.4
Q ss_pred HhcCccccccC--CCCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 218 QELPKFRLKAV--PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 218 ~~lp~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+.+|..+.+.. ..++.+|+||++.+..++..+.+||+|.||..|+.+|++.+.+||+||+.+.+.
T Consensus 7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45565555432 244578999999999888889999999999999999999989999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.41 E-value=1.3e-13 Score=98.22 Aligned_cols=50 Identities=50% Similarity=1.096 Sum_probs=45.4
Q ss_pred CCCccccccccccCCCceeeeC-CCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
++.+|+||++.+..++.+..++ |||.||..|+.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4478999999999888888898 9999999999999999999999998763
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=3.2e-13 Score=103.27 Aligned_cols=53 Identities=43% Similarity=0.954 Sum_probs=47.2
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
.+..+|+||++.+..++....++|+|.||..||.+|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34579999999998777788899999999999999999889999999988654
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=100.92 Aligned_cols=53 Identities=43% Similarity=0.966 Sum_probs=47.1
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
.+...|+||++.+..++.++.++|||.||..|+.+|+..+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34578999999998777889999999999999999999888999999988653
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=101.65 Aligned_cols=52 Identities=35% Similarity=0.832 Sum_probs=46.6
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
++..|+||++.+..++....++|+|.||..|+.+|++.+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 3478999999998877888889999999999999999888999999988653
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=2.2e-12 Score=91.68 Aligned_cols=50 Identities=38% Similarity=0.827 Sum_probs=43.0
Q ss_pred CCCccccccccccCC-CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVG-NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
++.+|+||++.+..+ +.+..++|||.||..|+.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 347899999999643 34778899999999999999998899999998774
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=99.78 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=40.4
Q ss_pred CCccccccccccC-----------CCceeeeC-CCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHV-----------GNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
+..|+||++.+.. ++.++.++ |+|.||..||.+|+..+.+||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4678888888853 34466665 9999999999999999999999998874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=95.89 Aligned_cols=52 Identities=25% Similarity=0.659 Sum_probs=43.5
Q ss_pred CCCCccccccccccCC----CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
.+...|+||++.+... ..+..++|||.||..|+.+|+..+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4457899999999732 223788999999999999999988999999988753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2.1e-12 Score=96.73 Aligned_cols=53 Identities=25% Similarity=0.651 Sum_probs=44.4
Q ss_pred CCCCccccccccccCC----CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+++.+|+||++.+... +.+..++|||.||..|+.+|+..+.+||+||.++...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3457899999999731 3347889999999999999999889999999988654
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=96.36 Aligned_cols=49 Identities=31% Similarity=0.635 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
.+...|+||++.+. +++.++|||.||..|+..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34578999999998 78889999999999999999988999999998853
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.8e-12 Score=94.86 Aligned_cols=49 Identities=24% Similarity=0.607 Sum_probs=43.2
Q ss_pred CCCccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+...|+||++.+. ++..+ +|||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4478999999998 67776 9999999999999999888999999988654
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=4.8e-12 Score=92.55 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=43.4
Q ss_pred CCccccccccccCC----CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+.+|+||++.+... +.+..++|||.||..|+.+|+..+.+||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999732 2347889999999999999999989999999988654
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=92.99 Aligned_cols=50 Identities=36% Similarity=0.741 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh---cCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~~v~~~ 282 (383)
.+...|+||++.+. ++..++|||.||..|+..|+. .+..||+||.++..+
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 44579999999998 788899999999999999997 455799999988543
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.4e-12 Score=96.12 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
.+...|+||++.+. .+..++|||.||..|+..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34578999999998 7888999999999999999998889999999885
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.21 E-value=1.7e-11 Score=100.56 Aligned_cols=50 Identities=28% Similarity=0.635 Sum_probs=40.5
Q ss_pred CCccccccccccCCC---------------ceeeeCCCCccchhhHHHHH-----hcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWL-----RLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl-----~~~~~CP~CR~~v~~ 281 (383)
+..|+||++.+..+. ..+.++|+|.||..||..|+ ..+.+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999996532 23368899999999999999 456789999987753
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=9.6e-12 Score=92.36 Aligned_cols=48 Identities=44% Similarity=0.956 Sum_probs=42.2
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
.+..|+||++.+. +....++|||.||..|+.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3478999999987 23578899999999999999998899999998885
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.5e-11 Score=94.58 Aligned_cols=53 Identities=30% Similarity=0.674 Sum_probs=44.5
Q ss_pred CCCCccccccccccCCCc-eeeeCCCCccchhhHHHHHhcC---CCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLRLN---VKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~v~~~ 282 (383)
.+..+|+||++.+...+. ++.++|||.||..|+..|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345789999999985443 8889999999999999999865 6899999987543
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=91.60 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=42.9
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~ 282 (383)
.+...|+||++.+. ++..++|||.||..|+.+|+. .+.+||+||.++..+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34578999999998 677799999999999999995 567899999988653
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5.2e-12 Score=94.41 Aligned_cols=48 Identities=40% Similarity=0.858 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+...|+||++.+. . ..++|||.||..|+.+|+..+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3478999999998 4 7899999999999999999999999999988654
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.17 E-value=1.8e-11 Score=99.41 Aligned_cols=49 Identities=29% Similarity=0.557 Sum_probs=41.7
Q ss_pred CCCccccccccccCCC---------------ceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 231 DCSECPICLEEFHVGN---------------EVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
+++.|+||++.+...- ....++|+|.||..||.+|+..+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4578999999987431 246688999999999999999999999999875
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=92.46 Aligned_cols=48 Identities=27% Similarity=0.576 Sum_probs=41.8
Q ss_pred CCCccccccccccCCCceeeeC-CCCccchhhHHHHHhcC--CCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~v~~ 281 (383)
+...|+||++.+. .++.++ |||.||..||..|+..+ .+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4478999999998 788899 99999999999999854 689999997543
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=8.8e-12 Score=106.01 Aligned_cols=47 Identities=40% Similarity=0.886 Sum_probs=43.2
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+..|+||++.+. .++.+||||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 368999999998 78999999999999999999999999999998854
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.15 E-value=2.9e-11 Score=92.31 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~ 281 (383)
.+...|+||++.+. +++.++|||.||..||..|+.. +.+||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34579999999998 8899999999999999999986 7789999998854
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.7e-11 Score=86.86 Aligned_cols=43 Identities=35% Similarity=0.801 Sum_probs=38.1
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh---cCCCCccc
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRC 275 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C 275 (383)
.+...|+||++.+. +++.++|||.||..||.+|+. .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44579999999998 788899999999999999998 45679998
No 26
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.5e-11 Score=91.60 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=43.3
Q ss_pred CCCCCccccccccccCCCceeeeCCC-----CccchhhHHHHHhcC--CCCcccCCCCCCC
Q 016747 229 PTDCSECPICLEEFHVGNEVRGLPCA-----HNFHIECIDEWLRLN--VKCPRCRCSVFPN 282 (383)
Q Consensus 229 ~~~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~v~~~ 282 (383)
..++..|.||++++..++. ..+||+ |.||..||++|+..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3445789999999876554 468996 999999999999854 4899999988654
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=6.4e-11 Score=93.29 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=42.0
Q ss_pred CCCCccccccccccCCCceeeeC-CCCccchhhHHHHHhc--CCCCcccCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRL--NVKCPRCRCSVF 280 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~--~~~CP~CR~~v~ 280 (383)
.+...|+||++.+. +++.++ |||.||..||..|+.. +..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44579999999998 888999 9999999999999974 358999999874
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=2.1e-11 Score=93.16 Aligned_cols=49 Identities=33% Similarity=0.601 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhc-------CCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-------NVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-------~~~CP~CR~~v~~ 281 (383)
.+...|+||++.+. +++.++|||.||..|+..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34578999999998 7788999999999999999986 5679999998864
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.2e-11 Score=90.76 Aligned_cols=48 Identities=35% Similarity=0.774 Sum_probs=42.7
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhc------CCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~v~~ 281 (383)
+...|+||++.+. ++..++|||.||..|+..|+.. ...||.||..+..
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4579999999998 7788999999999999999986 7789999998864
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=7.2e-11 Score=91.07 Aligned_cols=49 Identities=33% Similarity=0.622 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhc------CCCCcccCCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFPN 282 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~v~~~ 282 (383)
+...|+||++.+. .+..++|||.||..|+..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4578999999998 7788999999999999999986 66899999988643
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=3e-11 Score=96.99 Aligned_cols=46 Identities=30% Similarity=0.774 Sum_probs=41.8
Q ss_pred CccccccccccCCCceee-eCCCCccchhhHHHHHhcC-CCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~v~~ 281 (383)
..|+||++.+. .++. ++|||.||..||..|+..+ .+||+||.++..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 78999999998 7888 8999999999999999976 689999998854
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=1.1e-10 Score=94.95 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=43.3
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
...|+||++.+. ++..+ +|||.||..|+..|+..+.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 478999999998 78887 9999999999999999889999999988654
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.05 E-value=8.3e-11 Score=97.99 Aligned_cols=47 Identities=28% Similarity=0.584 Sum_probs=41.9
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcC-CCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~v~~ 281 (383)
...|+||++.+. .++.++|||.||..||..|+..+ ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 368999999999 88899999999999999999844 489999998865
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=83.38 Aligned_cols=43 Identities=35% Similarity=0.855 Sum_probs=37.0
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh---cCCCCccc
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LNVKCPRC 275 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C 275 (383)
.+...|+||++.+. +++.++|||.||..|+.+|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34578999999998 678899999999999999954 56789998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=93.34 Aligned_cols=46 Identities=33% Similarity=0.773 Sum_probs=41.9
Q ss_pred CccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+||++.+. .++.+ +|||.||..|+..|+..+.+||+||..+..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 68999999998 67777 899999999999999988999999998854
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.01 E-value=3.8e-11 Score=99.00 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=1.0
Q ss_pred CCCccccccccccCC-------------Cc--eeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVG-------------NE--VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~-------------~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
+++.|+||++.+... ++ ...++|+|.||..||.+|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999999742 11 223589999999999999999999999998863
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.7e-10 Score=96.45 Aligned_cols=52 Identities=25% Similarity=0.654 Sum_probs=44.3
Q ss_pred CCCccccccccccCC----CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 231 DCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
+..+|+||++.+... +.++.++|||.||..||.+|++.+.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 457899999999732 2338899999999999999999999999999988654
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=2.2e-10 Score=84.29 Aligned_cols=51 Identities=20% Similarity=0.447 Sum_probs=40.1
Q ss_pred CCccccccc-cccCCCce-eeeCCCCccchhhHHHHHhc-CCCCcccCCCCCCC
Q 016747 232 CSECPICLE-EFHVGNEV-RGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~-~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~~ 282 (383)
+..|+||++ .+...... ..++|||.||..|+.+|+.+ ...||+||.++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 368999999 77633222 45799999999999999764 46799999988654
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.97 E-value=6.9e-11 Score=97.11 Aligned_cols=46 Identities=33% Similarity=0.684 Sum_probs=41.5
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~ 280 (383)
+..|+||++.+. +++.++|||.||..|+..|+.. +.+||.||..+.
T Consensus 15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 468999999998 8889999999999999999975 668999999874
No 40
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.1e-10 Score=82.09 Aligned_cols=47 Identities=23% Similarity=0.546 Sum_probs=39.9
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
.+...|+||++.+. .++.++|||.||..|+..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 34578999999998 7889999999999999873 56799999988643
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=3.4e-10 Score=92.16 Aligned_cols=46 Identities=35% Similarity=0.716 Sum_probs=40.8
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCC---CCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV---KCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~v~~ 281 (383)
..|+||++.+. .+..++|||.||..|+..|+..+. +||+||..+..
T Consensus 22 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 68999999998 777899999999999999998654 79999998854
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.93 E-value=4.1e-10 Score=97.08 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=42.7
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC-CCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~v~~~ 282 (383)
...|+||++.+. .++.++|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 368999999998 888899999999999999998654 899999988654
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4.2e-10 Score=92.96 Aligned_cols=50 Identities=36% Similarity=0.644 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC-CCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~v~~~ 282 (383)
.+...|+||++.+. .++.++|||.||..|+..|+..+. +||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 44579999999998 788899999999999999998654 899999988653
No 44
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=9.3e-10 Score=83.19 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=40.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcC--CCCcccCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRCSVF 280 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~~v~ 280 (383)
+...+|+||.+.+..++.. ..|+|.||..||.+|++.+ .+||+||....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3447899999999865443 3799999999999999976 78999998774
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=4.9e-10 Score=97.95 Aligned_cols=48 Identities=35% Similarity=0.755 Sum_probs=42.0
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHHHhc-CCCCcccCCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 282 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~~ 282 (383)
...|+||++.+. .++.+ +|||.||..|+..|+.. +..||+||.++...
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 358999999998 67776 89999999999999996 77899999988543
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.92 E-value=6.9e-10 Score=86.38 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=43.8
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+...|+||++.|. +|+.++|||.||..||..|+..+.+||.||.++..
T Consensus 13 ~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3479999999999 89999999999999999999988899999988753
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=5.5e-10 Score=82.17 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=41.1
Q ss_pred CCCccccccccccCCCceeee--CCCCc-cchhhHHHHHhcCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
++.+|.||++... ++..+ ||||. ||..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3468999999987 66666 99999 899999999998889999999884
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.90 E-value=1e-09 Score=88.03 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=44.2
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+...|+||++.|. +|+.++|||.||..||..|+..+.+||.||.++..
T Consensus 28 ~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4579999999999 99999999999999999999988899999998854
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=5.4e-10 Score=93.33 Aligned_cols=53 Identities=25% Similarity=0.651 Sum_probs=44.3
Q ss_pred CCCCccccccccccCC----CceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVG----NEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~ 282 (383)
++...|+||++.+... .....++|||.||..|+.+|++.+.+||+||.++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4457899999998731 2237889999999999999999999999999988654
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=3.9e-10 Score=92.69 Aligned_cols=46 Identities=33% Similarity=0.721 Sum_probs=41.9
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~ 281 (383)
..|+||++.+. ++..++|||.||..|+..|+.. +.+||+||.++..
T Consensus 24 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 68999999998 7888999999999999999986 7789999998854
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.86 E-value=1.8e-09 Score=86.34 Aligned_cols=48 Identities=19% Similarity=0.066 Sum_probs=44.1
Q ss_pred CCCccccccccccCCCceeeeCCC-CccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+...|+||++.|. +|+.++|| |.||..||..|+..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3479999999999 99999999 999999999999988899999998854
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.85 E-value=9e-10 Score=80.75 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=40.8
Q ss_pred CCCccccccccccCCCceeee--CCCCc-cchhhHHHHHhcCCCCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
....|.||++... ++..+ ||||. ||..|+..|...+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3468999999887 66666 99998 999999999988889999999884
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.85 E-value=6.9e-10 Score=94.70 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=43.1
Q ss_pred CCCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC-CCcccCCCCCC
Q 016747 229 PTDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP 281 (383)
Q Consensus 229 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~v~~ 281 (383)
.++...|+||++.+. +++.++|||.||..||.+|+.... +||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 345579999999998 788899999999999999998554 89999998743
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=3e-09 Score=81.42 Aligned_cols=52 Identities=27% Similarity=0.606 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCCceeeeC--CCCccchhhHHHHHh-cCCCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLP--CAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~ 282 (383)
+++.+|+||++.+... .+..+| |||.||..|+..++. ....||.||+++...
T Consensus 9 ~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4557999999988532 234444 999999999999875 456799999988653
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=1.8e-09 Score=105.94 Aligned_cols=47 Identities=32% Similarity=0.786 Sum_probs=42.7
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~ 281 (383)
...|+||++.+. .++.+||||.||..|+..|+. .+.+||+||.++..
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 368999999998 889999999999999999998 78899999998854
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=4.3e-09 Score=86.69 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=40.0
Q ss_pred CccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+||++.+. .++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 23 ~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 78999999998 78888 9999999999999988 789999998743
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=6.2e-09 Score=97.78 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~ 281 (383)
.+...|+||++.|. +|+.+||||.||..||..|+.. +.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45679999999999 9999999999999999999985 4459999998853
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.77 E-value=1.5e-09 Score=82.12 Aligned_cols=42 Identities=26% Similarity=0.592 Sum_probs=38.1
Q ss_pred CccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+||++.+. ++..+||||. ||..|+..| ..||+||.++..
T Consensus 25 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 68999999998 8889999999 999999988 789999998853
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.3e-08 Score=75.80 Aligned_cols=47 Identities=26% Similarity=0.548 Sum_probs=39.6
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCCC
Q 016747 228 VPTDCSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 228 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...+...|.||++... .+..+||||. ||..|+.. ...||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3345578999999987 8889999999 99999984 4689999998854
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.68 E-value=1.3e-08 Score=89.80 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhc-CCCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~v~~ 281 (383)
.+...|+||++.|. .|+.+||||.||..||..|+.. +.+||+||.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45689999999999 8999999999999999999985 3579999988743
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=89.03 Aligned_cols=50 Identities=36% Similarity=0.653 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcC-CCCcccCCCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFPN 282 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~v~~~ 282 (383)
.+...|+||++.+. .++.++|||.||..|+.+|+... .+||.||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44579999999998 78889999999999999999854 4899999988653
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.5e-08 Score=80.23 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=39.6
Q ss_pred CCCccccccccccCCCceeeeC-CCCccchhhHHHHHhcC------CCCcc--cCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLN------VKCPR--CRCS 278 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~ 278 (383)
+...|+||++.|. +|+.++ |||.||..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4478999999999 899996 99999999999999853 48999 9866
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.1e-08 Score=75.87 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=36.8
Q ss_pred CccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+||++.+. ++..+||||. ||..|+.. ...||+||.++..
T Consensus 26 ~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 58999999988 7888999999 99999964 3689999998854
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.49 E-value=5.3e-08 Score=74.54 Aligned_cols=42 Identities=31% Similarity=0.597 Sum_probs=37.3
Q ss_pred CccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|.||++.+. .+..+||||. ||..|+..| ..||+||.++..
T Consensus 19 ~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 58999999988 8899999999 999999876 389999998854
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.49 E-value=3.7e-08 Score=94.34 Aligned_cols=52 Identities=23% Similarity=0.604 Sum_probs=39.4
Q ss_pred CCCCccccccccccC-CCce----eeeCCCCccchhhHHHHHhcC-----------CCCcccCCCCCC
Q 016747 230 TDCSECPICLEEFHV-GNEV----RGLPCAHNFHIECIDEWLRLN-----------VKCPRCRCSVFP 281 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~-~~~~----~~lpC~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~v~~ 281 (383)
+...+|+||++.+.. +.-+ ...+|+|.||..|+.+|++.. .+||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345689999999886 2222 224699999999999999732 359999998753
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.33 E-value=3.6e-07 Score=66.08 Aligned_cols=48 Identities=33% Similarity=0.645 Sum_probs=37.2
Q ss_pred CCCCccccccccccCCCceeeeCCC--C---ccchhhHHHHHh--cCCCCcccCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCA--H---NFHIECIDEWLR--LNVKCPRCRCSVF 280 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~--~~~~CP~CR~~v~ 280 (383)
++...|.||+++.. +...+||. | .||..|+.+|+. .+.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34578999999743 34468965 4 899999999997 3678999998763
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.33 E-value=1.4e-07 Score=91.74 Aligned_cols=43 Identities=30% Similarity=0.646 Sum_probs=38.5
Q ss_pred CCccccccccccCCCceeeeCCCCc-cchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+..|+||++.+. .+..+||||. ||..|+..| ..||+||.++..
T Consensus 295 ~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 468999999998 8999999999 999999988 689999998853
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=1.8e-07 Score=73.72 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=36.7
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhc--------CCCCcc--cCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL--------NVKCPR--CRCS 278 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~ 278 (383)
..+|+||++++..++.....+|||.||..|+..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4689999999874333333479999999999999862 236999 9987
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.29 E-value=2.8e-07 Score=66.88 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=41.9
Q ss_pred CccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+||++.+. +++.+ +|||.|++.||.+|+.++.+||+++.++..
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 67999999999 88888 899999999999999988889999988753
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.1e-07 Score=83.73 Aligned_cols=46 Identities=26% Similarity=0.499 Sum_probs=39.6
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHHHhcC--CCCcc--cCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLN--VKCPR--CRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~--~~CP~--CR~~v~ 280 (383)
...|+||++.|. .|+.. .|||.||..||..|+..+ .+||+ ||+.+.
T Consensus 181 el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 458999999999 78775 899999999999999854 46999 998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.96 E-value=4.5e-06 Score=65.70 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=38.2
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHh-cCCCCcccCCCCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 281 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~ 281 (383)
.|.+|--.+. ...+.+||+|+||.+|+..|.+ +.++||.|+++|..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877766 3668899999999999999976 56789999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.31 E-value=0.00012 Score=67.53 Aligned_cols=48 Identities=23% Similarity=0.625 Sum_probs=38.2
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcC--CCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN--VKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~CR~~v~~ 281 (383)
...|.||.+....+..+. .|+|.||..|+..|++.+ ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 468999999988554332 399999999999999854 489999987643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.28 E-value=0.012 Score=45.52 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=39.7
Q ss_pred CCccccccccccCCCceeeeCC-CCccchhhHHHHHhcCCCCcccCCCCCCCCccc
Q 016747 232 CSECPICLEEFHVGNEVRGLPC-AHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS 286 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~~~~~~ 286 (383)
...|-.|.-..+ -.+.| .|..|..|+...|.....||+|+.++......+
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 367999986654 33556 699999999999999999999999887665443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.28 E-value=0.063 Score=41.95 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCccccccccccCCCceee--eCCCCccchhhHHHH
Q 016747 232 CSECPICLEEFHVGNEVRG--LPCAHNFHIECIDEW 265 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~--lpC~H~Fh~~Ci~~w 265 (383)
+..|.||.+.+.. .+.. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 3689999986432 3333 889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.57 E-value=0.24 Score=35.90 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=31.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCSV 279 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~v 279 (383)
.....|.||.+. ++-..--.|...||..|+...+.... .||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344689999753 22222224888999999988876433 499997654
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.52 E-value=1.2 Score=48.25 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCceeeeCCC-CccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+...|+|-.+.|. +|+.+|.| +.+-..+|.+|+..+.+||.=|.++..
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4578999999999 99999998 589999999999999999999988753
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=81.50 E-value=1.4 Score=33.38 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=21.7
Q ss_pred CCCccccccccccCCCceeeeC---CCCccchhhHHHH
Q 016747 231 DCSECPICLEEFHVGNEVRGLP---CAHNFHIECIDEW 265 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w 265 (383)
.+..|.||-.--. -..+| |+-+||..|+++-
T Consensus 14 ~D~~C~VC~~~t~----~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTA----ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCS----SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccc----cceeccccccccccHhhcccc
Confidence 4578999963321 22344 7889999999996
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.38 E-value=0.34 Score=35.73 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=31.3
Q ss_pred CCCCccccccccccCCCceee-eCCCCccchhhHHHHHhc----CCCCcccCCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRL----NVKCPRCRCSVF 280 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~----~~~CP~CR~~v~ 280 (383)
.+...|.+|..... ++.... =.|...||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34457999987653 222222 137778999998764432 234999986553
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.23 E-value=1 Score=31.81 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=29.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCSV 279 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~v 279 (383)
..+..|.+|.+. ++-..--.|...||..|+..-+.... .||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345689999853 12222223777899999986544322 399997643
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.79 E-value=0.94 Score=32.17 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=31.3
Q ss_pred CCCCccccccccccCCCceeee-CCCCccchhhHHHHHh-----cCCCCcccCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR-----LNVKCPRCRCS 278 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 278 (383)
++...|++|...+..+...+.- .|..-||..|+.--.. ..-.||.|+.+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3446799999887533333222 4787899999864322 23459999753
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.47 E-value=1.5 Score=29.58 Aligned_cols=44 Identities=23% Similarity=0.527 Sum_probs=26.8
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
.|.||.+.-..++-..--.|...||..|+.+=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888886532212222224778899999976444222 3999964
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.38 E-value=2.8 Score=36.27 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=30.5
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCSVF 280 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~v~ 280 (383)
.+..|.+|.+. ++-...=.|...||..|+.+-+.... .||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 34679999844 22222223778899999977665322 4999986543
No 83
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.81 E-value=2.4 Score=34.98 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCCCccccccccccC-CC-ceeeeCCCCccchhhHHHHHh-cCC---CCcccCC
Q 016747 230 TDCSECPICLEEFHV-GN-EVRGLPCAHNFHIECIDEWLR-LNV---KCPRCRC 277 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~-~~-~~~~lpC~H~Fh~~Ci~~wl~-~~~---~CP~CR~ 277 (383)
.+...|.+|...+.. .. ...-.-|.|.+|..|-..--. ++. .|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 456789999999842 22 233345999999998543211 111 2777765
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=72.31 E-value=1.2 Score=39.38 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=30.0
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCSV 279 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~v 279 (383)
..+..|.+|.+. ++-...=.|...||..|+.+-+.... .||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345689999743 11111113778899999987665322 499998654
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.23 E-value=0.75 Score=31.87 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=28.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
..+..|.+|.+. ++-..--.|...||..|+.+-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445789999864 22222224777899999986554222 3888853
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=72.06 E-value=1.6 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.648 Sum_probs=28.3
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
.+..|.+|.+. ++-..--.|...||..|+..-+.... .||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34689999863 22222223777899999987554222 3999964
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.96 E-value=3.2 Score=31.69 Aligned_cols=46 Identities=24% Similarity=0.531 Sum_probs=29.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCS 278 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 278 (383)
..+..|.+|.+. ++-..--.|.-.||..|+.+=+.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345689999864 22222223667899999987665322 39999753
No 88
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=71.03 E-value=1.8 Score=37.77 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=32.6
Q ss_pred CccccccccccCCCc---eee-eCCCCccchhhHHHH------Hh-----cCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNE---VRG-LPCAHNFHIECIDEW------LR-----LNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~---~~~-lpC~H~Fh~~Ci~~w------l~-----~~~~CP~CR~~v~ 280 (383)
+.|+||...+..++. .+. -.|..-||..|..-- +. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 679999999886652 222 237888999997421 11 1467999987543
No 89
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.90 E-value=3.8 Score=30.58 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=26.0
Q ss_pred CCccccccccccCCCceeeeCC----CCccchhhHHHHHhc
Q 016747 232 CSECPICLEEFHVGNEVRGLPC----AHNFHIECIDEWLRL 268 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC----~H~Fh~~Ci~~wl~~ 268 (383)
...|.+|.+.+++ ..-..| .|.||..|-+..+++
T Consensus 15 ~l~CtlC~erLEd---tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED---THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS---TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc---CceeeCCCccCCeeeccccHHHHHh
Confidence 4689999999983 323334 799999999998873
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.80 E-value=22 Score=27.06 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=35.4
Q ss_pred CccccccccccCCC--cee--eeCCCCccchhhHHHHHh-cCCCCcccCCCCCCC
Q 016747 233 SECPICLEEFHVGN--EVR--GLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 282 (383)
Q Consensus 233 ~~C~IC~~~~~~~~--~~~--~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~v~~~ 282 (383)
..|.||-++.-... ++. .-.|+--.|+.|..-=.+ .++.||.|+......
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 68999999965332 222 234777789999875444 677899999888654
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.09 E-value=4.1 Score=32.13 Aligned_cols=46 Identities=20% Similarity=0.557 Sum_probs=29.0
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhc----CCCCcccC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL----NVKCPRCR 276 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----~~~CP~CR 276 (383)
.+..|.+|.+.=...+-..--.|+..||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45789999876331111333458899999999876542 12366664
No 92
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.01 E-value=9.8 Score=27.60 Aligned_cols=41 Identities=32% Similarity=0.729 Sum_probs=25.4
Q ss_pred CCccccccccccCCCceeeeC-----CC-CccchhhHHHHHhc----CCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLP-----CA-HNFHIECIDEWLRL----NVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lp-----C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~v 279 (383)
...| ||.+... + . .+- |. ..||..|+. +.. .-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g-~--MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-G-E--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-S-S--EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-C-C--EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3567 8987543 2 2 233 44 579999997 332 22499997644
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.35 E-value=2.4 Score=30.16 Aligned_cols=50 Identities=20% Similarity=0.457 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCCceee--eCCCCccchhhHHHHHh-------cCCCCcccCCCC
Q 016747 230 TDCSECPICLEEFHVGNEVRG--LPCAHNFHIECIDEWLR-------LNVKCPRCRCSV 279 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~--lpC~H~Fh~~Ci~~wl~-------~~~~CP~CR~~v 279 (383)
.++..|.||.......+.... -.|.-.||..|+..-+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345789999976432222222 23778899999886432 122499996543
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.94 E-value=4.1 Score=32.30 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=27.6
Q ss_pred CccccccccccCCCceee-eCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 233 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
..|.+|.+.-..++.... -.|...||..|+.+-+.... .||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 367888764221122211 23888999999976555322 4999974
No 95
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=57.10 E-value=17 Score=25.99 Aligned_cols=9 Identities=22% Similarity=0.253 Sum_probs=4.1
Q ss_pred hhccccchh
Q 016747 147 KWLTRRQAH 155 (383)
Q Consensus 147 ~~~~rr~~~ 155 (383)
++++||++.
T Consensus 33 kcrhRrrqA 41 (70)
T 2klu_A 33 RSRHRRRQA 41 (70)
T ss_dssp HSSCCSSSC
T ss_pred HHHHHHHHH
Confidence 455544433
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=57.04 E-value=2.8 Score=29.33 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=28.7
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCS 278 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 278 (383)
.+..|.+|.+. ++-..--.|...||..|+.+-+.... .||.|+..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 34689999864 22222224778899999986544222 39999643
No 97
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=56.77 E-value=5.2 Score=37.77 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=40.0
Q ss_pred HHHHHHhcCccccccCCCCCCccccccccccCCCceeee---CCC--CccchhhHHHHHhcCCCCcccCCC
Q 016747 213 VEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGL---PCA--HNFHIECIDEWLRLNVKCPRCRCS 278 (383)
Q Consensus 213 ~~~~~~~lp~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l---pC~--H~Fh~~Ci~~wl~~~~~CP~CR~~ 278 (383)
...+...++....... .....|++|....... .... .=| |..|..|-..|-..+..||.|-..
T Consensus 164 ~~~~a~~l~~~~~~~~-~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 164 WSHWLLGLEEGAVVET-ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp HHHHHHTCCTTCSCCC-TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred HHHHHHhCCccccCcc-ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3445556655443333 5567999999876521 1111 133 457888888998888899999764
No 98
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=56.09 E-value=3.7 Score=35.84 Aligned_cols=43 Identities=26% Similarity=0.560 Sum_probs=28.1
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRCS 278 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 278 (383)
..|.+|.+. ++-...-.|...||..|+.+=+.... .||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 579999854 22222223677899999976554222 49999865
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=55.90 E-value=6.6 Score=30.37 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=27.0
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhc---CCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL---NVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~ 277 (383)
..| ||......+.-+.-=.|.-.||..|+..-... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 456 88776543322222248888999998653332 235999974
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.08 E-value=2.5 Score=32.48 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=28.8
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
++..|.||...-..+.-..-=.|...||..|+.+=+.... .||.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3467999987643111111113788899999985444222 3999964
No 101
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.86 E-value=12 Score=28.69 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceeeeC--CC-CccchhhHHHHHhc----CCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLP--CA-HNFHIECIDEWLRL----NVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lp--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~v 279 (383)
...| ||.+... ++-+.-=. |. .-||..|+. +.. +-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9988643 22111112 44 569999987 332 23499997644
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=54.65 E-value=3.1 Score=29.71 Aligned_cols=44 Identities=27% Similarity=0.661 Sum_probs=28.3
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
.+..|.||.+. ++-..--.|...||..|+.+-+.... .||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45689999864 22222224777899999986544222 3999964
No 103
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.18 E-value=10 Score=28.37 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCccccccccccCCCceee-eCCCCccchhhHHHH
Q 016747 232 CSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEW 265 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~w 265 (383)
...|.+|...|..-..-.. -.||++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4689999999874332222 349999999997543
No 104
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.02 E-value=25 Score=23.09 Aligned_cols=10 Identities=10% Similarity=-0.057 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 016747 132 FSYCGLLCIA 141 (383)
Q Consensus 132 ~~~~~ll~i~ 141 (383)
.|.+++..+.
T Consensus 18 gGv~~v~ii~ 27 (44)
T 2l2t_A 18 GGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 105
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=51.47 E-value=21 Score=23.45 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 016747 130 LLFSYCGLLCIA 141 (383)
Q Consensus 130 li~~~~~ll~i~ 141 (383)
++.+.+++..+.
T Consensus 17 VVgGv~~~~ii~ 28 (44)
T 2ks1_B 17 MVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 344444444443
No 106
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.42 E-value=2.4 Score=34.30 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=29.2
Q ss_pred CccccccccccCCCcee-eeCCCCccchhhHHHHHhcCCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVR-GLPCAHNFHIECIDEWLRLNVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~-~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 277 (383)
..|..|...|..-..-. --.||.+||..|..........|-.|-.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 57999999886422222 2359999999997665545556877754
No 107
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.05 E-value=14 Score=29.11 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=29.5
Q ss_pred CCCCCCccccccccccCCCceeee---CCCCccchhhHHHHHhcCC----CCcccCCCCCC
Q 016747 228 VPTDCSECPICLEEFHVGNEVRGL---PCAHNFHIECIDEWLRLNV----KCPRCRCSVFP 281 (383)
Q Consensus 228 ~~~~~~~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~v~~ 281 (383)
....+..|.+|.+. .+...- .|...||..|+. |.... .||.|+..+-.
T Consensus 11 ~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 11 KQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred cCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 33455789999832 232222 366789999997 44322 39988765543
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.44 E-value=11 Score=28.09 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=23.3
Q ss_pred CCccccccccccCCCceee-eCCCCccchhhHHH
Q 016747 232 CSECPICLEEFHVGNEVRG-LPCAHNFHIECIDE 264 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~ 264 (383)
...|.+|...|.....-.. -.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3579999999874322222 34999999999754
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=48.63 E-value=9.6 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=23.7
Q ss_pred CccccccccccCCCceee-eCCCCccchhhHHHH
Q 016747 233 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDEW 265 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~w 265 (383)
..|.+|...|..-..... -.||++||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 579999998874322222 359999999997654
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.21 E-value=9.4 Score=30.92 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=22.7
Q ss_pred CccccccccccCCCceee-eCCCCccchhhHHH
Q 016747 233 SECPICLEEFHVGNEVRG-LPCAHNFHIECIDE 264 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~ 264 (383)
..|.+|...|..-..-.. -.||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 579999999874322222 34999999999644
No 111
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.56 E-value=14 Score=27.93 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=23.9
Q ss_pred CCCccccccccccCCCceee-eCCCCccchhhHHH
Q 016747 231 DCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDE 264 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~ 264 (383)
+...|.+|...|..-..-.. -.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34689999999874322222 34999999999754
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.55 E-value=12 Score=27.85 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=22.1
Q ss_pred CCccccccccccCCCceee-eCCCCccchhhHH
Q 016747 232 CSECPICLEEFHVGNEVRG-LPCAHNFHIECID 263 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~ 263 (383)
...|.+|...|..-..-.. -.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3589999999864322222 3499999999843
No 113
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=47.08 E-value=12 Score=27.09 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.0
Q ss_pred CccccccccccCCCceee-eCCCCccchhhHH
Q 016747 233 SECPICLEEFHVGNEVRG-LPCAHNFHIECID 263 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~ 263 (383)
..|.+|...|..-..... -.||++||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 589999999874322222 3499999999964
No 114
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=47.02 E-value=7.9 Score=27.17 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=27.6
Q ss_pred CccccccccccCCCceeee-CCCCccchhhHHHHHhcCCCCccc
Q 016747 233 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLRLNVKCPRC 275 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~C 275 (383)
..|--|...+... ....- .|++.||.+|=.=--+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999888521 11223 399999999953333345579988
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.62 E-value=6.6 Score=35.30 Aligned_cols=44 Identities=30% Similarity=0.616 Sum_probs=24.1
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhc-----CCCCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----NVKCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 277 (383)
.|.+|...-..++-...=.|...||..|+.+=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 58888764221112222247888999999865542 124999974
No 116
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.20 E-value=6.8 Score=28.96 Aligned_cols=44 Identities=23% Similarity=0.556 Sum_probs=26.5
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhc-----CCCCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRL-----NVKCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 277 (383)
.|.||...-..++-..-=.|...||..|+.+=+.. .=.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888864322222221247888999999865442 124888864
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.58 E-value=11 Score=33.44 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=23.5
Q ss_pred CCccccccccccCCCceee-eCCCCccchhhHHH
Q 016747 232 CSECPICLEEFHVGNEVRG-LPCAHNFHIECIDE 264 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~ 264 (383)
+..|.+|...|..-..-.. -.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999864332222 34999999999654
No 118
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.23 E-value=16 Score=32.53 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=24.4
Q ss_pred CCCccccccccccCCCceee-eCCCCccchhhHHHH
Q 016747 231 DCSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEW 265 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~w 265 (383)
++..|.+|...|..-..-.. -.||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34689999999874322222 349999999997643
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.85 E-value=4.8 Score=29.86 Aligned_cols=41 Identities=34% Similarity=0.696 Sum_probs=25.1
Q ss_pred ccccccccccCCCceeee---CCCCccchhhHHHHHhcC-----CCCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGL---PCAHNFHIECIDEWLRLN-----VKCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 277 (383)
.|.+|...-. .-..| .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d---~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD---PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC---GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC---CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5667765432 22233 377789999998765521 24898874
No 120
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.34 E-value=20 Score=26.31 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=28.3
Q ss_pred CccccccccccCCCceeee-CCCCccchhhHHHHHh-----cCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR-----LNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~v 279 (383)
..| ||......+...+.- .|..-||..|+.---. ..-.||.|+..-
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455 998876433333222 3888899999853211 234599998654
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=41.46 E-value=7.1 Score=28.23 Aligned_cols=41 Identities=34% Similarity=0.721 Sum_probs=25.1
Q ss_pred ccccccccccCCCceeee---CCCCccchhhHHHHHhc-----CCCCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGL---PCAHNFHIECIDEWLRL-----NVKCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~-----~~~CP~CR~ 277 (383)
.|.+|...-. .-..| .|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD---PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC---GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC---CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5667775322 22223 37788999999865542 224998874
No 122
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.21 E-value=9.1 Score=27.79 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=28.3
Q ss_pred CCCCcccccccccc-CCCceee-eCCCCccchhhHHHHHhc--CCCCcccCC
Q 016747 230 TDCSECPICLEEFH-VGNEVRG-LPCAHNFHIECIDEWLRL--NVKCPRCRC 277 (383)
Q Consensus 230 ~~~~~C~IC~~~~~-~~~~~~~-lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~ 277 (383)
.++..|.||.+.-. .++.... =.|.-.||..|+..-... .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 44578999987532 1122221 137788999998753221 123888853
No 123
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.13 E-value=21 Score=34.38 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=29.9
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHh---c--CCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---L--NVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~--~~~CP~CR~~v~~ 281 (383)
..|++-...+. ...+...|.|.-|.+- ..|+. + .-.||+|...+..
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH
Confidence 57999888887 2344556999855543 23333 2 2359999887744
No 124
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=40.14 E-value=13 Score=24.96 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=26.4
Q ss_pred ccccccccccCCCceeee--CCCCccchhhHHHHH----hcCCCCcccC
Q 016747 234 ECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWL----RLNVKCPRCR 276 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl----~~~~~CP~CR 276 (383)
.|.+|...+..++..+.- .|..-||..|+.--. ...-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 578898877543333222 366679999975321 2455699885
No 125
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.63 E-value=33 Score=26.85 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=20.8
Q ss_pred CCccccccccccC------CCceeeeCCCCccchhhHH
Q 016747 232 CSECPICLEEFHV------GNEVRGLPCAHNFHIECID 263 (383)
Q Consensus 232 ~~~C~IC~~~~~~------~~~~~~lpC~H~Fh~~Ci~ 263 (383)
...|.+|+..-.. ++-..--.|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3679999875311 1222233589999999995
No 126
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.46 E-value=22 Score=34.20 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=29.7
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHh---cC--CCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR---LN--VKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~--~~CP~CR~~v~~ 281 (383)
..|++-...+. ...+...|.|.-|.+- ..|+. +. -.||+|.+.+..
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceec--cCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH
Confidence 57999888887 2344456999855442 33333 22 349999987754
No 127
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.16 E-value=21 Score=25.55 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=24.2
Q ss_pred CCCccccccccccCCCceeeeCC-CCccchhhHHHH
Q 016747 231 DCSECPICLEEFHVGNEVRGLPC-AHNFHIECIDEW 265 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~w 265 (383)
+..-|.||.++- ..+-+.| +-.||..|.+.-
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 335799999883 5777889 778999997764
No 128
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=38.60 E-value=32 Score=28.47 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=29.4
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHHh-----------cCCCCcccCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLR-----------LNVKCPRCRC 277 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-----------~~~~CP~CR~ 277 (383)
..+..|.+|.+-=. -.--=.|...||..|+.+-+. ..=.||.|+.
T Consensus 61 g~~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34578999975422 222224778899999997653 1124999974
No 129
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.39 E-value=12 Score=27.18 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=27.4
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHH---------hcCCCCcccCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL---------RLNVKCPRCRCS 278 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl---------~~~~~CP~CR~~ 278 (383)
..| ||......+.-+.--.|..-||..|+.--. ...-.||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 898876522222222478889999985221 145679999753
No 130
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.60 E-value=5.4 Score=30.27 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=30.1
Q ss_pred CCccccccccccCCCceeee--CCCCccchhhHHHHHhc--------CCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWLRL--------NVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~v 279 (383)
+..|.+|...-...+....+ .|...||..|+.+-+.. .=.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 36899998763321122222 37889999999875431 12499997543
No 131
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=36.47 E-value=16 Score=27.63 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=28.9
Q ss_pred CCCccccccccccCCCceeee---CCCCccchhhHHHHHhc--CCCCcccCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGL---PCAHNFHIECIDEWLRL--NVKCPRCRCSV 279 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~--~~~CP~CR~~v 279 (383)
++..|.||.+.-... .-..+ .|.-.||..|+..-... .=.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~-~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCS-EEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCC-CCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 457899998753211 22223 36678999998753321 12399997543
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.53 E-value=13 Score=28.90 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=10.8
Q ss_pred ccchhhHHHHHh
Q 016747 256 NFHIECIDEWLR 267 (383)
Q Consensus 256 ~Fh~~Ci~~wl~ 267 (383)
.||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.51 E-value=13 Score=28.85 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=10.8
Q ss_pred ccchhhHHHHHh
Q 016747 256 NFHIECIDEWLR 267 (383)
Q Consensus 256 ~Fh~~Ci~~wl~ 267 (383)
.||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.19 E-value=8.1 Score=30.40 Aligned_cols=26 Identities=19% Similarity=0.643 Sum_probs=16.4
Q ss_pred eeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 249 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 249 ~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
+...||+.|. .=+.....||.|+..-
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3456899882 1123446799999743
No 135
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=34.96 E-value=8.7 Score=26.76 Aligned_cols=40 Identities=38% Similarity=0.823 Sum_probs=23.6
Q ss_pred CccccccccccCCCceee-eC--CC-CccchhhHHHHHhc----CCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVRG-LP--CA-HNFHIECIDEWLRL----NVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~-lp--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 277 (383)
..| +|.+... + .... =. |. .-||..|+. +.. .-.||.|+.
T Consensus 10 ~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 456 9987642 2 2211 12 54 579999997 332 224999964
No 136
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=34.47 E-value=12 Score=26.94 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=26.4
Q ss_pred CCccccccccccCCCceee-eCCCCccchhhHHHHHh---cCCCCcccCC
Q 016747 232 CSECPICLEEFHVGNEVRG-LPCAHNFHIECIDEWLR---LNVKCPRCRC 277 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~ 277 (383)
...| ||..... ++..+. -.|..-||..|+.---. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3567 9987654 222222 23788899999854221 2335888864
No 137
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.17 E-value=8.7 Score=26.82 Aligned_cols=38 Identities=34% Similarity=0.821 Sum_probs=23.1
Q ss_pred CccccccccccCCCceeeeC-----CC-CccchhhHHHHHhc----CCCCcccCC
Q 016747 233 SECPICLEEFHVGNEVRGLP-----CA-HNFHIECIDEWLRL----NVKCPRCRC 277 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lp-----C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 277 (383)
..| ||..... + . .+- |. ..||..|+. +.. .-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g-~--mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-G-E--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-S-E--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-C-C--EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 456 8987642 2 2 233 44 569999997 332 224998864
No 138
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.84 E-value=52 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=13.1
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHH
Q 016747 118 PEEGQKWGFLIWLLFSYCGLLCIA 141 (383)
Q Consensus 118 p~~~~~w~~~i~li~~~~~ll~i~ 141 (383)
|...|-|.+++-++.|.+.+..++
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHH
Confidence 445555666666666654444333
No 139
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.66 E-value=18 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCCccccccccccCCC--ceeeeCCCCccchhhHHHHHhcCC--CCcccCC
Q 016747 231 DCSECPICLEEFHVGN--EVRGLPCAHNFHIECIDEWLRLNV--KCPRCRC 277 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~--~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~ 277 (383)
++..|.+|...|..-. ......|.|.+|..|-. |..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4579999999874322 23334599999999962 332222 2777764
No 140
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.19 E-value=33 Score=25.36 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=29.1
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...|..|.+.+. ......-+..||..|. .|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~---~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR---GPFLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC---SCEEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec---ceEEEECCccccccCC--------ccCCCCCCCCC
Confidence 368999999885 2233456888999984 79999988753
No 141
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=32.90 E-value=9 Score=32.52 Aligned_cols=45 Identities=22% Similarity=0.464 Sum_probs=27.9
Q ss_pred CCccccccccccCCCceeee-CCCCccchhhHHHHHh-----cCCCCcccCC
Q 016747 232 CSECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR-----LNVKCPRCRC 277 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~-----~~~~CP~CR~ 277 (383)
...| +|......+.....- .|...||..|+.--.. ..-.||.|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3578 998875432222222 3777899999853211 2345999975
No 142
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=32.41 E-value=9.4 Score=37.13 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCccccccccccCCCc-eeeeCCCCccchhhHHHHHh-------cCCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGNE-VRGLPCAHNFHIECIDEWLR-------LNVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~-------~~~~CP~CR~~v 279 (383)
...|.+|...|..... -..-.||++||..|...... ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3579999998863221 22235999999999876542 123477775433
No 143
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.42 E-value=31 Score=24.41 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCccccccccccCCCceeee--CCCCccchhhHH
Q 016747 232 CSECPICLEEFHVGNEVRGL--PCAHNFHIECID 263 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~ 263 (383)
...|.+|...+..++..+.- .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 46899999988654443332 477779999974
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=30.89 E-value=9.4 Score=29.93 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=26.0
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhcC----CCCcccCCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLN----VKCPRCRCS 278 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~----~~CP~CR~~ 278 (383)
.|.+|.+.-....-..--.|...||..|+.+-+... -.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 566776553311111112377889999998655422 238888643
No 145
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.91 E-value=50 Score=26.85 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCCCccccccccccCCCceeeeCCCCccchhhHHHHH-----h------cCCCCcccCC
Q 016747 230 TDCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWL-----R------LNVKCPRCRC 277 (383)
Q Consensus 230 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl-----~------~~~~CP~CR~ 277 (383)
..+..|.+|.+-=+ -.--=.|-..||..|+.+-+ . ..=.|+.|+.
T Consensus 55 g~~~~C~vC~dGG~---LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSE---EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCe---eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34467999985421 11112478899999999752 1 1124999964
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.63 E-value=26 Score=24.94 Aligned_cols=36 Identities=28% Similarity=0.742 Sum_probs=17.1
Q ss_pred cccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 235 CPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 235 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
|+.|.+.+..++.+ ..-+..||..|. .|..|+.++.
T Consensus 3 C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 3 CPKCDKEVYFAERV--TSLGKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp CTTTSSBCCGGGEE--EETTEEEETTTC--------BCTTTCCBCC
T ss_pred CCCCCCEEECceEE--EECCccccCCCC--------CccccCccCC
Confidence 55555554422222 123555666552 4666655543
No 147
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.62 E-value=53 Score=23.56 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...|.-|.+.+. + .....-+..||..| .+|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~-~--~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-E--QPLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-S--CCCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-c--eEEEECcceeCCCC--------CEeCCCCCccCC
Confidence 357999999887 2 22334678899988 479999988754
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.19 E-value=38 Score=23.98 Aligned_cols=39 Identities=31% Similarity=0.744 Sum_probs=29.4
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+.|.+.+..++.+ ..-+..||..|. .|..|+.++..
T Consensus 10 ~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCC
Confidence 5799999988755433 346788999884 79999888753
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.47 E-value=57 Score=23.55 Aligned_cols=39 Identities=31% Similarity=0.718 Sum_probs=28.7
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
...|.-|.+.+..++.+ ..-+..||.+| ..|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSL--LALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCE--EETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEE--EECCccccccc--------CCcCcCCCCcC
Confidence 36899999988654433 23577899988 47999988774
No 150
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.34 E-value=39 Score=24.21 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=27.9
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
...|.-|.+.+.. + ....-+..||..|. +|-.|+..+
T Consensus 15 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG--V-FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS--S-CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCccccCCCCccC--c-EEEECcceeCcCcC--------eeCCCCCCC
Confidence 3689999998873 2 33446788999984 799998776
No 151
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.58 E-value=53 Score=24.09 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...|.-|.+.+.. .....-+..||.+|. .|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc---cEEEECCceECccCC--------EecCCCCCCCC
Confidence 3579999998873 223446788999984 79999888754
No 152
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.03 E-value=22 Score=25.99 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=26.7
Q ss_pred CccccccccccCCCceeee--CCCCccchhhHHHHHh---------cCCCCcccCCC
Q 016747 233 SECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWLR---------LNVKCPRCRCS 278 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~---------~~~~CP~CR~~ 278 (383)
..| ||......+.-+.-= .|..-||..|+.---. .+-.||.|+..
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 467 898874322222222 4778899999853211 23459999754
No 153
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.86 E-value=32 Score=26.75 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred CccccccccccCCCceeee--CCCCccchhhHHHHH---h-------cCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGL--PCAHNFHIECIDEWL---R-------LNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl---~-------~~~~CP~CR~~v 279 (383)
..|.+|...+..+.....- .|..-||..|+.--- + ..-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999988654443332 367779999975221 0 233599998654
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.19 E-value=53 Score=22.88 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=28.4
Q ss_pred CccccccccccC-CCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|.-|.+.+.. ++......-+..||..|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 579999998874 112233346888999884 7999988774
No 155
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=52 Score=22.74 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=27.5
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|..|.+.+. + + ....-+..||.+|. .|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~-~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFII-G-R-VIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCC-S-C-CEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CcCccCCCEec-c-e-EEEECcccccccCC--------EeCCCCCcCCC
Confidence 57999998876 2 2 23346778999884 79999887754
No 156
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.06 E-value=50 Score=22.81 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=27.3
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|..|.+.+.. + ....-+..||..|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT--G-GVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS--S-EEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc--c-eEEECccccCCCCC--------ccCCCCCcCC
Confidence 579999988862 2 23446788999884 7999988774
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.05 E-value=12 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=26.6
Q ss_pred ccccccccccCCCceeeeCCCCccchhhHHHHHhcCC----CCcccCC
Q 016747 234 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNV----KCPRCRC 277 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 277 (383)
.|.||...-..++-..--.|...||..|+.+=+.... .||.|+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 6788876533222222224788899999986444322 3888854
No 158
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.93 E-value=7.4 Score=30.13 Aligned_cols=39 Identities=21% Similarity=0.540 Sum_probs=25.6
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 279 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v 279 (383)
..|++|..++.. .=++.+|..|-.. +.....||-|.+++
T Consensus 33 ~~CP~Cq~eL~~-------~g~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQ-------DNGHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEE-------ETTEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCccee-------cCCEEECccccch-hhccccCcchhhHH
Confidence 689999988762 1234447777443 23445699998877
No 159
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.00 E-value=73 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.500 Sum_probs=29.2
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|..|.+.+..++.. ...-+..||..|. +|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 5799999988754443 2335778999884 79999887754
No 160
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.89 E-value=44 Score=22.87 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=28.0
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+.|.+.+. ++ ....-+..||..|. .|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 57999998887 22 33446788999884 79999887753
No 161
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.37 E-value=66 Score=22.25 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=28.6
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|.-|.+.+..++.. ...-+..||..|. +|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 5799999988743332 2336788999884 79999887753
No 162
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.36 E-value=52 Score=25.94 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 231 DCSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
+...|..|...+..........=|..+|..|..+-+.....|..|..+|.+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 456888888887532223334457778999987765543479999888864
No 163
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.23 E-value=93 Score=22.40 Aligned_cols=40 Identities=28% Similarity=0.706 Sum_probs=28.9
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...|..|.+.+...+.. ..-+..||..|. .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL--CVNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBC--CBTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEE--EECCCeeCCCcC--------EEcCCCCCcCC
Confidence 36899999988643333 245778999994 79999877743
No 164
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.74 E-value=10 Score=28.00 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=14.8
Q ss_pred CCCCccchhhHHHHHhcCCCC
Q 016747 252 PCAHNFHIECIDEWLRLNVKC 272 (383)
Q Consensus 252 pC~H~Fh~~Ci~~wl~~~~~C 272 (383)
.|+|.||..|...|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4899999999988743 445
No 165
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.67 E-value=1e+02 Score=20.10 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccc
Q 016747 127 LIWLLFSYCGLLCIACMSMGKWLTRR 152 (383)
Q Consensus 127 ~i~li~~~~~ll~i~~~~~~~~~~rr 152 (383)
+.-.++|.+ ++.+....+..|.+||
T Consensus 14 Ia~~vVGvl-l~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGIL-LVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHHHhheehh
Confidence 444455533 3333333333444433
No 166
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.63 E-value=18 Score=36.19 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=27.6
Q ss_pred ccccccccccCCCceeee-CCCCccchhhHHHHHh-----cCCCCcccCCCC
Q 016747 234 ECPICLEEFHVGNEVRGL-PCAHNFHIECIDEWLR-----LNVKCPRCRCSV 279 (383)
Q Consensus 234 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~-----~~~~CP~CR~~v 279 (383)
..++|......+.....- .|.--||..|+.---. ..-.||.|+..-
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 334998876433333222 3887899999853221 223599998643
No 167
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.23 E-value=76 Score=21.89 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=28.4
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+.|.+.+...+.. ...-+..||..|. .|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCC
Confidence 5799999988754333 2235778999884 69999887743
No 168
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.91 E-value=69 Score=25.08 Aligned_cols=50 Identities=6% Similarity=-0.101 Sum_probs=34.0
Q ss_pred CCccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 232 CSECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 232 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
...|..|...+..........=|..+|..|..+-+..+..|-.|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 35788888877521122233457779999988876655579999988865
No 169
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.82 E-value=54 Score=23.13 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=27.2
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|+-|.+.+.. .....-+..||.+| .+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 479999888762 22334678899988 47999988875
No 170
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.51 E-value=25 Score=26.70 Aligned_cols=41 Identities=24% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCCccccccccccCCCceeee-CCC---CccchhhHHHHHh----cCCCCcc-cC
Q 016747 231 DCSECPICLEEFHVGNEVRGL-PCA---HNFHIECIDEWLR----LNVKCPR-CR 276 (383)
Q Consensus 231 ~~~~C~IC~~~~~~~~~~~~l-pC~---H~Fh~~Ci~~wl~----~~~~CP~-CR 276 (383)
+...| ||..... + ..+.- .|. .-||..|+. |. ..-.||. |+
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 33567 9987533 2 22111 233 569999985 22 2234999 96
No 171
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.05 E-value=99 Score=21.60 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=28.5
Q ss_pred CccccccccccCCCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCCC
Q 016747 233 SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 281 (383)
Q Consensus 233 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~~ 281 (383)
..|+-|.+.+..++... ..-+..||..| .+|-.|+.++..
T Consensus 12 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCCC
Confidence 68999999886434332 23577899988 479999877743
No 172
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.71 E-value=1.2e+02 Score=20.77 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=9.9
Q ss_pred CCchhhhHHHHHHHHHHHHH
Q 016747 121 GQKWGFLIWLLFSYCGLLCI 140 (383)
Q Consensus 121 ~~~w~~~i~li~~~~~ll~i 140 (383)
.|-|.+++-++.|.+.+..+
T Consensus 10 vp~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 44455555555555443333
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=20.36 E-value=89 Score=22.30 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhccccchhhhhhh
Q 016747 124 WGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQ 160 (383)
Q Consensus 124 w~~~i~li~~~~~ll~i~~~~~~~~~~rr~~~~~~~~ 160 (383)
|..++.++.+..+++..+..++.- ..+.+.++++++
T Consensus 7 ~p~~LivlGg~~~lll~~glcI~c-cvkcrhRrrqAe 42 (70)
T 2klu_A 7 GSMALIVLGGVAGLLLFIGLGIFF-SVRSRHRRRQAE 42 (70)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHH-HHHSSCCSSSCT
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 333443444445555555554433 444444444333
No 174
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.36 E-value=60 Score=22.92 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=28.5
Q ss_pred CccccccccccC-CCceeeeCCCCccchhhHHHHHhcCCCCcccCCCCC
Q 016747 233 SECPICLEEFHV-GNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 280 (383)
Q Consensus 233 ~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~v~ 280 (383)
..|+.|.+.+.. ++......-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 579999998873 112333446788999994 7999988775
Done!