Query 016749
Match_columns 383
No_of_seqs 174 out of 1425
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 2.1E-79 4.7E-84 597.8 32.0 274 110-383 28-302 (302)
2 COG0861 TerC Membrane protein 100.0 2.5E-51 5.4E-56 393.1 26.7 237 131-381 2-245 (254)
3 PRK14013 hypothetical protein; 100.0 1.8E-50 3.8E-55 397.3 28.1 262 115-383 3-332 (338)
4 TIGR03716 R_switched_YkoY inte 100.0 1.7E-48 3.7E-53 365.7 24.0 200 152-379 2-214 (215)
5 PF03741 TerC: Integral membra 100.0 7.5E-48 1.6E-52 353.2 20.4 183 148-351 1-183 (183)
6 COG2899 Uncharacterized protei 100.0 1.1E-42 2.5E-47 334.0 12.1 268 113-383 2-340 (346)
7 TIGR03717 R_switched_YjbE inte 100.0 9.1E-41 2E-45 304.8 22.1 174 147-352 2-176 (176)
8 PF04332 DUF475: Protein of un 100.0 2.6E-38 5.6E-43 305.8 10.4 221 159-383 1-293 (294)
9 COG1971 Predicted membrane pro 97.5 0.017 3.7E-07 54.4 18.3 171 146-353 2-188 (190)
10 PF01914 MarC: MarC family int 97.4 0.015 3.2E-07 54.7 18.1 72 158-231 17-92 (203)
11 PRK11469 hypothetical protein; 97.3 0.03 6.4E-07 52.3 18.1 169 147-353 3-186 (188)
12 PRK10739 putative antibiotic t 97.2 0.064 1.4E-06 50.5 19.4 74 156-231 15-92 (197)
13 TIGR00427 membrane protein, Ma 97.2 0.058 1.3E-06 50.8 18.9 74 155-230 17-94 (201)
14 PRK10995 inner membrane protei 97.0 0.066 1.4E-06 50.9 17.7 71 158-230 21-95 (221)
15 PF03741 TerC: Integral membra 97.0 0.0086 1.9E-07 55.6 11.1 74 147-229 109-183 (183)
16 PRK11111 hypothetical protein; 97.0 0.12 2.7E-06 49.2 19.1 71 158-230 23-97 (214)
17 COG2095 MarC Multiple antibiot 96.8 0.072 1.6E-06 50.5 16.2 77 153-231 15-95 (203)
18 COG0861 TerC Membrane protein 96.7 0.031 6.7E-07 54.7 12.8 75 147-230 137-212 (254)
19 TIGR03716 R_switched_YkoY inte 96.4 0.032 6.9E-07 53.4 10.9 75 147-230 99-174 (215)
20 PRK10323 cysteine/O-acetylseri 96.2 0.98 2.1E-05 41.7 20.5 85 142-230 4-94 (195)
21 TIGR03717 R_switched_YjbE inte 96.2 0.08 1.7E-06 49.0 11.7 75 277-352 2-82 (176)
22 PF03596 Cad: Cadmium resistan 96.1 0.1 2.3E-06 49.1 12.0 72 158-232 5-79 (191)
23 PF01810 LysE: LysE type trans 95.7 1.5 3.2E-05 39.6 18.5 69 157-231 7-82 (191)
24 TIGR02840 spore_YtaF putative 95.5 1.9 4.2E-05 40.7 18.2 77 150-230 3-82 (206)
25 COG1280 RhtB Putative threonin 95.5 2.3 5E-05 39.9 19.3 78 149-230 12-94 (208)
26 COG2119 Predicted membrane pro 95.3 0.78 1.7E-05 43.4 14.5 160 159-352 17-185 (190)
27 PRK10958 leucine export protei 95.0 3.2 7E-05 38.8 18.6 73 152-230 19-98 (212)
28 PRK09304 arginine exporter pro 94.9 3.3 7.1E-05 38.5 19.7 78 147-230 9-91 (207)
29 PRK10229 threonine efflux syst 92.8 1.2 2.6E-05 41.0 10.5 79 148-230 10-93 (206)
30 TIGR00948 2a75 L-lysine export 92.5 0.91 2E-05 40.9 9.1 67 158-230 6-77 (177)
31 TIGR03718 R_switched_Alx integ 92.2 1.2 2.6E-05 44.9 10.2 77 275-352 63-148 (302)
32 PRK10520 rhtB homoserine/homos 89.5 4.3 9.3E-05 37.4 10.7 74 151-230 14-94 (205)
33 TIGR00949 2A76 The Resistance 89.4 3.1 6.7E-05 37.4 9.5 67 159-229 4-75 (185)
34 PRK10019 nickel/cobalt efflux 88.8 27 0.00059 34.9 19.1 63 291-353 211-274 (279)
35 COG4280 Predicted membrane pro 82.8 45 0.00098 32.4 13.7 101 278-381 126-230 (236)
36 COG1279 Lysine efflux permease 81.5 52 0.0011 31.6 18.5 75 147-230 9-91 (202)
37 PRK11469 hypothetical protein; 81.0 31 0.00066 32.3 11.9 98 123-229 70-184 (188)
38 TIGR00779 cad cadmium resistan 75.2 4.1 9E-05 38.6 4.3 73 158-234 5-80 (193)
39 COG2215 ABC-type uncharacteriz 75.0 1E+02 0.0022 31.4 19.7 70 280-351 226-299 (303)
40 PRK10621 hypothetical protein; 73.4 90 0.002 30.1 19.9 31 331-361 233-263 (266)
41 COG4300 CadD Predicted permeas 69.9 21 0.00046 34.1 7.6 83 147-232 5-90 (205)
42 PF07690 MFS_1: Major Facilita 67.5 1.1E+02 0.0023 28.6 21.1 72 151-224 93-166 (352)
43 COG1971 Predicted membrane pro 62.0 1.5E+02 0.0032 28.3 11.8 76 147-230 107-187 (190)
44 PF14036 YlaH: YlaH-like prote 58.7 1E+02 0.0023 25.4 8.8 48 324-372 25-72 (77)
45 PRK07668 hypothetical protein; 58.3 1.4E+02 0.0029 29.7 11.1 103 274-380 83-196 (254)
46 PF11298 DUF3099: Protein of u 56.9 35 0.00076 27.7 5.7 54 175-230 10-65 (73)
47 TIGR00901 2A0125 AmpG-related 55.6 2E+02 0.0042 27.6 23.5 61 147-209 87-147 (356)
48 TIGR02840 spore_YtaF putative 50.5 94 0.002 29.4 8.4 71 281-353 4-83 (206)
49 KOG2881 Predicted membrane pro 46.4 84 0.0018 31.7 7.5 74 277-353 76-152 (294)
50 PF06570 DUF1129: Protein of u 43.5 2.2E+02 0.0049 26.5 9.8 93 284-376 78-197 (206)
51 KOG2881 Predicted membrane pro 42.4 1.2E+02 0.0025 30.7 7.9 67 159-230 82-151 (294)
52 TIGR00920 2A060605 3-hydroxy-3 39.6 4.9E+02 0.011 30.4 13.0 103 122-224 97-221 (886)
53 COG2119 Predicted membrane pro 38.0 2.6E+02 0.0056 26.8 9.1 72 280-354 14-88 (190)
54 TIGR02865 spore_II_E stage II 37.5 6.6E+02 0.014 28.5 19.0 61 291-351 196-257 (764)
55 TIGR01937 nqrB NADH:ubiquinone 37.1 2E+02 0.0042 30.6 9.0 28 107-134 44-71 (413)
56 PRK14013 hypothetical protein; 36.7 1.6E+02 0.0034 30.6 8.0 77 145-229 223-301 (338)
57 PF05977 MFS_3: Transmembrane 33.7 6.3E+02 0.014 27.2 24.5 93 115-209 75-167 (524)
58 KOG2532 Permease of the major 33.0 6.2E+02 0.013 26.9 12.7 63 156-221 141-207 (466)
59 PF11947 DUF3464: Protein of u 32.2 1E+02 0.0022 28.4 5.3 35 341-375 78-112 (153)
60 PF02460 Patched: Patched fami 32.1 2.7E+02 0.0059 31.2 9.7 78 152-229 286-385 (798)
61 PRK05349 Na(+)-translocating N 30.1 2.8E+02 0.006 29.4 8.7 27 108-134 47-73 (405)
62 COG0053 MMT1 Predicted Co/Zn/C 29.8 5.8E+02 0.013 25.5 14.6 62 267-328 142-209 (304)
63 PF02535 Zip: ZIP Zinc transpo 29.8 5.1E+02 0.011 24.8 14.4 22 210-231 268-289 (317)
64 PRK12392 bacteriochlorophyll c 29.0 6.3E+02 0.014 25.7 13.5 31 110-140 90-120 (331)
65 TIGR00899 2A0120 sugar efflux 28.9 5.1E+02 0.011 24.6 12.7 58 159-218 103-164 (375)
66 PF01169 UPF0016: Uncharacteri 27.5 3E+02 0.0065 22.2 6.8 64 275-341 6-74 (78)
67 PF06695 Sm_multidrug_ex: Puta 27.4 4.1E+02 0.0089 23.0 10.0 45 291-335 5-53 (121)
68 TIGR00900 2A0121 H+ Antiporter 27.3 5.1E+02 0.011 24.1 27.5 61 148-210 97-157 (365)
69 PF02659 DUF204: Domain of unk 25.5 3E+02 0.0066 20.9 7.6 62 157-223 1-67 (67)
70 PF04632 FUSC: Fusaric acid re 24.7 8.7E+02 0.019 26.1 11.6 95 121-227 342-436 (650)
71 PRK01024 Na(+)-translocating N 24.7 4.8E+02 0.011 28.5 9.4 30 105-134 42-71 (503)
72 PRK10489 enterobactin exporter 24.0 7.1E+02 0.015 24.6 13.3 116 122-239 291-417 (417)
73 PF05473 Herpes_UL45: UL45 pro 23.3 2.2E+02 0.0047 27.0 6.0 61 71-135 6-66 (200)
74 TIGR00806 rfc RFC reduced fola 22.7 5.1E+02 0.011 28.4 9.3 61 147-210 115-178 (511)
75 PRK04375 protoheme IX farnesyl 21.9 7.7E+02 0.017 24.3 10.3 24 110-133 86-109 (296)
76 PF06541 DUF1113: Protein of u 21.5 5E+02 0.011 23.4 7.8 59 143-209 70-133 (157)
77 TIGR00880 2_A_01_02 Multidrug 21.0 4E+02 0.0087 20.6 13.6 71 150-222 58-130 (141)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=2.1e-79 Score=597.82 Aligned_cols=274 Identities=45% Similarity=0.760 Sum_probs=266.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHH
Q 016749 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (383)
Q Consensus 110 ~~~~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~g 189 (383)
.+.+.|||..||++|+++|++||+++|++.|++.+.||+|||++|++||+||++|+++++++|++|+++|||+|+||++|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCccc
Q 016749 190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK 269 (383)
Q Consensus 190 AvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~ 269 (383)
|++||++|+++|++++++|+|++|+||+||+|+|+|++++++||+|+++|+.+|++||++|++++|||++|+++++|++.
T Consensus 108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~ 187 (302)
T TIGR03718 108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRY 187 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCcee
Confidence 99999999999999999999999999999999999999987777777889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q 016749 270 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMI 349 (383)
Q Consensus 270 aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMl 349 (383)
+||++.++++||++|++||+|||||++|+|+||++|++||+||++|+|++|+++++++||||||||+++.+|+|+|+||+
T Consensus 188 ~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkml 267 (302)
T TIGR03718 188 ATPLFLVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKML 267 (302)
T ss_pred cCcHHHHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccc-ccChhHHHHHHHHHHHHHHHHHhhccCC
Q 016749 350 LDYFGF-HISTEASLSFVATSLSAGVLLSLMKKSD 383 (383)
Q Consensus 350 l~~~~~-~IP~~~sl~vi~~il~~si~~Sl~~~~~ 383 (383)
++++|+ |||+++|++++++++++++++|++++||
T Consensus 268 l~~~~~~~ip~~~sl~vi~~~l~~~i~~Sl~~~~~ 302 (302)
T TIGR03718 268 LHATDVYHIPIGVSLGVIVGILAVSIVASLWKTRK 302 (302)
T ss_pred HhhcCcCCCChhHHHHHHHHHHHHHHHHHhcccCC
Confidence 998765 9999999999999999999999998875
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-51 Score=393.09 Aligned_cols=237 Identities=28% Similarity=0.417 Sum_probs=207.3
Q ss_pred HHHHHH--HhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016749 131 FGLGVG--FIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (383)
Q Consensus 131 F~~~i~--~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f 208 (383)
|+...| |...+..|.+++|++++|++||+||++|+++++++ +|++||||+++||+.+|+++|+++++.++++++.+
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~ 79 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT 79 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444 33456677899999999999999999999999997 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCcc-ccchHHHHHHHHHHHHHHh
Q 016749 209 EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAF 287 (383)
Q Consensus 209 ~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~-~aTpl~~~vl~IE~~DlvF 287 (383)
+|++++||.+|+|+++|++++.+++. .|+.++.. ++++|++++. +++. ..||+|.++.+||++|++|
T Consensus 80 ~~l~~~fg~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vF 147 (254)
T COG0861 80 QPLLYIFGLYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVF 147 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999875443 23444444 6788888876 4443 7899999999999999999
Q ss_pred hcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhc---cccccChh-HHH
Q 016749 288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY---FGFHISTE-ASL 363 (383)
Q Consensus 288 SlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~---~~~~IP~~-~sl 363 (383)
|+|||||++|+|+|++++++|+++|+++||++|+.+++++||||+++|+++.+|++||+||++++ .++|+|+. .++
T Consensus 148 SlDSV~Aa~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~~~~~ip~~~~~~ 227 (254)
T COG0861 148 SLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYL 227 (254)
T ss_pred hhhHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhhhccccccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 56688755 566
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 016749 364 SFVATSLSAGVLLSLMKK 381 (383)
Q Consensus 364 ~vi~~il~~si~~Sl~~~ 381 (383)
.+...+++..+..+..++
T Consensus 228 ~v~f~vl~~~~~~~~~~~ 245 (254)
T COG0861 228 AVGFSVLIELLNISARKK 245 (254)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666777777777777663
No 3
>PRK14013 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-50 Score=397.33 Aligned_cols=262 Identities=20% Similarity=0.224 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HH
Q 016749 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF 193 (383)
Q Consensus 115 k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vm 193 (383)
.+.++||+.+++++++.+.++++ .+.....+++.++|++||+||++|||.+.++ +|++||||+|+||+++|+ +|
T Consensus 3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~~--m~~~wq~~fl~~Gi~iAvFgm 77 (338)
T PRK14013 3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLKR--MSPKWQKRFLTWGILIAVFGM 77 (338)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999877653 5666667889999999999999999999996 999999999999999998 99
Q ss_pred HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhcc
Q 016749 194 RLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI 249 (383)
Q Consensus 194 R~ifI~~gv~Ll~~------------------------f~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~ 249 (383)
|++|+++.+++.+. ++.+..+||+||++.++++++|+|+|.+|-. ++.+.++|.-
T Consensus 78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g 156 (338)
T PRK14013 78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLG 156 (338)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhc
Confidence 99999999998764 3468999999999999999999988888752 3333333322
Q ss_pred ccc---------------ccccCC-----------------------ceE-Ee-e-CCccccchHHHHHHHHHHHHHHhh
Q 016749 250 PVT---------------TYYDGN-----------------------RFF-TN-Q-DGMRKATPLLLTVAVIELSDIAFA 288 (383)
Q Consensus 250 pv~---------------~~~~g~-----------------------~Ff-~~-~-~G~~~aTpl~~~vl~IE~~DlvFS 288 (383)
++. ...+.+ +++ .. + ..+...+..+..++++|++|++||
T Consensus 157 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS 236 (338)
T PRK14013 157 KLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFS 236 (338)
T ss_pred CccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 211 000000 000 00 0 112244678899999999999999
Q ss_pred cccHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhccccccChhHHHHHH
Q 016749 289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 366 (383)
Q Consensus 289 lDSVpAafAIT~d~fIV~~g~ifaIlgLRsl--yf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~sl~vi 366 (383)
+|||||+||+|+|+++|++||++|++++|++ |++..+.++||+||||+++++++++|+||+++ .++|||++++++++
T Consensus 237 ~DsV~aafAiT~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~-~~~~IPe~vs~~i~ 315 (338)
T PRK14013 237 FDGVIGAFAITNDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLS-IGVHIPEVITGLIG 315 (338)
T ss_pred hccchhheeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHh-cCcCCcHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999998 45899999999999
Q ss_pred HHHHHHHHHHHhhccCC
Q 016749 367 ATSLSAGVLLSLMKKSD 383 (383)
Q Consensus 367 ~~il~~si~~Sl~~~~~ 383 (383)
+.+++.++++|++++|+
T Consensus 316 ~~~i~~si~~S~~~~r~ 332 (338)
T PRK14013 316 VALIGLAFWSSIRYNRR 332 (338)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999987764
No 4
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=1.7e-48 Score=365.69 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=175.4
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccC
Q 016749 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (383)
Q Consensus 152 lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~ 231 (383)
++|++||+||++|+++++++ +|+++|||+++||++||+++|++|+++++++++ ++|++++||+||+|+|+|++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~~--LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred chhHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999995 999999999999999999999999999999995 679999999999999999999765
Q ss_pred CCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHH
Q 016749 232 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF 311 (383)
Q Consensus 232 ~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~if 311 (383)
++++.+++. .+...+.++.++.+||++|++||+|||||++|+|+|++++++||++
T Consensus 79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~ 133 (215)
T TIGR03716 79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII 133 (215)
T ss_pred ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence 443322211 0011245789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh--------ccccccChh-----HHHHHHHHHHHHHHHHHh
Q 016749 312 AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD--------YFGFHISTE-----ASLSFVATSLSAGVLLSL 378 (383)
Q Consensus 312 aIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~--------~~~~~IP~~-----~sl~vi~~il~~si~~Sl 378 (383)
|+++||++|+.+++++||||++||+++.+|+++|+||+++ ..|+|+|+. ....+++.++.++.+.|.
T Consensus 134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ig~kLil~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~~~~~~ 213 (215)
T TIGR03716 134 GILIMRFAATIFVKLLERFPELETAAFLLIGWIGVKLLLETLAHPSIPILHIEFPHSALWKLIFWGVLVAIAVVGWILSY 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999995 345777776 777788888877766664
Q ss_pred h
Q 016749 379 M 379 (383)
Q Consensus 379 ~ 379 (383)
+
T Consensus 214 ~ 214 (215)
T TIGR03716 214 R 214 (215)
T ss_pred c
Confidence 3
No 5
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=100.00 E-value=7.5e-48 Score=353.19 Aligned_cols=183 Identities=38% Similarity=0.604 Sum_probs=164.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 016749 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (383)
Q Consensus 148 lt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~ 227 (383)
+|++++|++||+||++|+++++++ +|+++|+|+++||+.+|+++|++|+++++++++.++|++++||+||+|+|+|++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999997 999999999999999999999999999999998889999999999999999999
Q ss_pred hccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHH
Q 016749 228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307 (383)
Q Consensus 228 ~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~ 307 (383)
++++ ++|+ ++...++.++..|. ....+|.++++||++|++||+|||||++|+|+|++++++
T Consensus 79 ~~~~-~~d~-~~~~~~~~~~~~~~-----------------~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~ 139 (183)
T PF03741_consen 79 HEER-DEDP-ENAEVEEEKKFFPV-----------------SKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT 139 (183)
T ss_pred Hhcc-cccc-chhhhhhhhccccc-----------------hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 9876 3333 44444433332222 123599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q 016749 308 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD 351 (383)
Q Consensus 308 g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~ 351 (383)
|+++|+++||++|+.+++++||||+++++++.+|+++|+||+++
T Consensus 140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999875
No 6
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=333.99 Aligned_cols=268 Identities=21% Similarity=0.251 Sum_probs=219.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH-H--HHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHH
Q 016749 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFF-A--GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (383)
Q Consensus 113 ~~k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~efl-t--~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~g 189 (383)
+..+.++||+..+.+|++.++|.+|..|...+..++ + +.++|+|||.||++|+|-+.+. |.+.||||+|+|||++
T Consensus 2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlI 79 (346)
T COG2899 2 TAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILI 79 (346)
T ss_pred chHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHH
Confidence 457789999999999999999998877665555443 3 4789999999999999999997 8999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhccCCCCCccchhHHHH
Q 016749 190 AI-VFRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKT 244 (383)
Q Consensus 190 Av-vmR~ifI~~gv~Ll~~------------------------f~~I~~igGafLL~~a~k~~~~~~~e~d~~~~~i~~~ 244 (383)
|+ +||++|++++++.-+. ++.|..+||.||++.++++++|.|+|.+|-+ |+.+-
T Consensus 80 AVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~-~iE~~ 158 (346)
T COG2899 80 AVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLK-WIERP 158 (346)
T ss_pred HHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccchhhh-hHHHH
Confidence 98 8999999999987654 4568999999999999999999888777642 22222
Q ss_pred hhhccccc---------------c--cccCC--ceEEe-----------e--CC---------ccccchHHHHHHHHHHH
Q 016749 245 CQRFIPVT---------------T--YYDGN--RFFTN-----------Q--DG---------MRKATPLLLTVAVIELS 283 (383)
Q Consensus 245 ~~k~~pv~---------------~--~~~g~--~Ff~~-----------~--~G---------~~~aTpl~~~vl~IE~~ 283 (383)
+.|+=++. . ..+.+ .++.- + +| ....+..+..++|+|+.
T Consensus 159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL 238 (346)
T COG2899 159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL 238 (346)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHH
Confidence 22211110 0 11221 22210 0 11 11234578999999999
Q ss_pred HHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhccccccChhH
Q 016749 284 DIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEA 361 (383)
Q Consensus 284 DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRsl--yf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~ 361 (383)
|.+||+|+|+++||+|+||+|+..|+.+|.+.+||+ |-+-.+.+++|+|||||+.+.++.+++.|+++.--+|||+++
T Consensus 239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvv 318 (346)
T COG2899 239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVV 318 (346)
T ss_pred hhhccccceeeeeeeccCchhheeccchhheeeeeeEEEEEecCcHHHHHHHhcchHHHHHHHHHHHHHhhhheehHHHH
Confidence 999999999999999999999999999999999999 555569999999999999999999999999987348999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 016749 362 SLSFVATSLSAGVLLSLMKKSD 383 (383)
Q Consensus 362 sl~vi~~il~~si~~Sl~~~~~ 383 (383)
+..+.+..+++++.+|+++|||
T Consensus 319 TgL~Ga~fIgls~~sSv~~Nr~ 340 (346)
T COG2899 319 TGLVGAVFIGLSLWSSVRYNRR 340 (346)
T ss_pred HHhhHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999998875
No 7
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=9.1e-41 Score=304.83 Aligned_cols=174 Identities=24% Similarity=0.323 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~ 226 (383)
+++..++|.+||+||++|++++.+ ++|+++|||++.||+++|+++|.+|+++|.++++ ++|+++.||++|+|+|+||
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999877 5999999999999999999999999999999996 7999999999999999999
Q ss_pred hhccCCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhcC-CchhH
Q 016749 227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV 305 (383)
Q Consensus 227 ~~~~~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~-d~fIV 305 (383)
+++++++++.++ ...+|+|.++++||++|++||+|||||++|+|+ |++++
T Consensus 79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li 129 (176)
T TIGR03717 79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL 129 (176)
T ss_pred Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 987644333211 114789999999999999999999999999997 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhc
Q 016749 306 FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 352 (383)
Q Consensus 306 ~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~ 352 (383)
++|.++|++.||+.+..+.++++|||++||+++.+|+|+|+||++++
T Consensus 130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~d 176 (176)
T TIGR03717 130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVTD 176 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999753
No 8
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=100.00 E-value=2.6e-38 Score=305.77 Aligned_cols=221 Identities=19% Similarity=0.281 Sum_probs=183.7
Q ss_pred hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------hhHHHH
Q 016749 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL 213 (383)
Q Consensus 159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~------------------------f~~I~~ 213 (383)
.||++|||.+.+. +.+.||||+|+|||++|+ +||++|+++++++.+. ++.+..
T Consensus 1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa 78 (294)
T PF04332_consen 1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA 78 (294)
T ss_pred CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence 5999999999996 899999999999999998 8999999999997764 456899
Q ss_pred HHHHHHHHHHHHhhhccCCCCCccchhHHHHhhhccccc---------------cccc--CC---ceEE-----------
Q 016749 214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVT---------------TYYD--GN---RFFT----------- 262 (383)
Q Consensus 214 igGafLL~~a~k~~~~~~~e~d~~~~~i~~~~~k~~pv~---------------~~~~--g~---~Ff~----------- 262 (383)
+||+||++.+++++++++| .+|-. ++.|.+.|.-++. ..+. .+ .+..
T Consensus 79 FGG~FLlmvfL~f~f~~~k-~~Wl~-~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~ 156 (294)
T PF04332_consen 79 FGGMFLLMVFLDFFFDEEK-VHWLR-WIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI 156 (294)
T ss_pred HhHHHHHHHHHheeecCCc-ceeeh-HHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999877 66531 2223222221110 0010 00 0110
Q ss_pred ---------eeCC-----ccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH--HH
Q 016749 263 ---------NQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS--EG 326 (383)
Q Consensus 263 ---------~~~G-----~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~--~l 326 (383)
.+++ ....+..+..++|+|+.|++||+|+|++|||+|+|++|+.+|+.+|++.+|++.-.+. +.
T Consensus 157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt 236 (294)
T PF04332_consen 157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT 236 (294)
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence 1111 1245678999999999999999999999999999999999999999999999976666 79
Q ss_pred HHhhhchHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 016749 327 MADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD 383 (383)
Q Consensus 327 l~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~sl~vi~~il~~si~~Sl~~~~~ 383 (383)
+++|+|||||+++.++.+|+.|+++.+|+|||++++..+.++.++.+++.|++++||
T Consensus 237 L~~Y~YLEhGA~yAIg~La~IMll~~~~~~iPE~vTglig~~~Ig~a~~sSi~~~r~ 293 (294)
T PF04332_consen 237 LSEYRYLEHGAHYAIGALAVIMLLSIFGFHIPEVVTGLIGVVFIGLAFWSSIRYNRR 293 (294)
T ss_pred HHHhHHHhcchHHHHHHHHHHHHHHhhcccchHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999886
No 9
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.45 E-value=0.017 Score=54.36 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhchhHHHHHH-HHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHH
Q 016749 146 EFFAGYILEQSLSVDNLFVFV-LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGIL 219 (383)
Q Consensus 146 eflt~~lLE~sLSvDNafV~a-lIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f-----~~I~~igGafL 219 (383)
++++..++-..+|.||--|=. .=.+. .+++. +..|..|+...+ +-++++++|..+=..+ .|-.+++++.|
T Consensus 2 ~~~sllllA~alsmDAFav~l~~G~~~--~k~~~-~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL 77 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLGKGLAK--HKIRF-KEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLL 77 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHhhhhh--ccccH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999965532 22222 22222 345555544443 5667777776543322 35677899999
Q ss_pred HHHHHHhhhcc--CCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHH
Q 016749 220 LFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG 297 (383)
Q Consensus 220 L~~a~k~~~~~--~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafA 297 (383)
.+.|.||+.+. +||++..+|+ ++ +. + -.....++-++-|+|+.+.-++
T Consensus 78 ~~lG~~mI~e~f~~~~~~~~~~~----------------~~-------~~-----~--~~~~~~~laiatSidal~vG~~ 127 (190)
T COG1971 78 IILGLKMIIEGFKNEEDEFVDPA----------------EK-------HD-----L--NFKELILLAIATSIDALAVGVG 127 (190)
T ss_pred HHHHHHHHHHHhchhhcchhccc----------------cc-------ch-----h--hHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999854 1222211110 00 00 0 0222335566779999887777
Q ss_pred hcCCch-hHHHHHHHH-------HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q 016749 298 VTRDPF-IVFSSNLFA-------ILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353 (383)
Q Consensus 298 IT~d~f-IV~~g~ifa-------IlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~ 353 (383)
.+.-.. +..+...++ .+|.--. ..+.++..+ |-|..+..+|..+|.|++.+..
T Consensus 128 ~a~lgv~i~~~av~iG~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 128 LAFLGVNILLAAVAIGLITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 664222 222222332 2222222 233344443 6688899999999999999865
No 10
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=97.44 E-value=0.015 Score=54.73 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=63.2
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhccC
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE 231 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~~ 231 (383)
-..|+-++.-..+. .++++|+|...-..+.|.+.=.+|.++|-.+++.| +-....||+.|+..|++|+.++.
T Consensus 17 P~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 17 PIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46788889888885 79999999999999999999999999999999765 45889999999999999998654
No 11
>PRK11469 hypothetical protein; Provisional
Probab=97.30 E-value=0.03 Score=52.27 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHhh-hHHHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG----TATLQRF-EAVNLVLAGILLF 221 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~g----v~Ll~~f-~~I~~igGafLL~ 221 (383)
+++..++=.+||.||..|=...=.. .++...++.+...+..+. +-.+++++| ..+.+.. ++-..+++..|++
T Consensus 3 ~~~i~llaialsmDaF~v~ia~G~~--~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~ 79 (188)
T PRK11469 3 ITATVLLAFGMSMDAFAASIGKGAT--LHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIF 79 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999997764432211 233333444444443332 344555543 3332221 2345788889999
Q ss_pred HHHHhhhcc--CCCCCccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhc
Q 016749 222 SSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299 (383)
Q Consensus 222 ~a~k~~~~~--~~e~d~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT 299 (383)
.|.+|+++. ++++++++. +.+ +. .......=++-|+|+..+-++.+
T Consensus 80 lG~~mi~e~~~~~~~~~~~~----------------~~~------------~~----~~~~l~LaiAtSiDAlavGi~~~ 127 (188)
T PRK11469 80 LGGRMIIEGFRGADDEDEEP----------------RRR------------HG----FWLLVTTAIATSLDAMAVGVGLA 127 (188)
T ss_pred HHHHHHHHHHhccccccccc----------------ccC------------CC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998864 111111100 000 00 11122334567999887766553
Q ss_pred --CC-ch-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q 016749 300 --RD-PF-----IVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353 (383)
Q Consensus 300 --~d-~f-----IV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~ 353 (383)
+- ++ +-.++.++...|++... .+.+...| +.+....++|..+|+|++++..
T Consensus 128 ~~g~~~~~~~~~ig~~s~~~~~~G~~lG~-~~g~~~g~--~a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 128 FLQVNIIATALAIGCATLIMSTLGMMVGR-FIGSIIGK--KAEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 32 22 11223333444444443 33345555 4677999999999999999754
No 12
>PRK10739 putative antibiotic transporter; Provisional
Probab=97.21 E-value=0.064 Score=50.55 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=62.9
Q ss_pred HhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhccC
Q 016749 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE 231 (383)
Q Consensus 156 sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~~ 231 (383)
.=-+.|+-+|..+.+. .++++|||...-..+.|.+.=.+|.+.|..+++.| +-....||+.|+..|++|+++++
T Consensus 15 inPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~~ 92 (197)
T PRK10739 15 MDPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPSA 92 (197)
T ss_pred HhHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3346788899998886 79999999998888888888889999999999765 45889999999999999997653
No 13
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=97.18 E-value=0.058 Score=50.78 Aligned_cols=74 Identities=15% Similarity=0.321 Sum_probs=63.8
Q ss_pred HHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhcc
Q 016749 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (383)
Q Consensus 155 ~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~ 230 (383)
..=-+.|+-+|..+.+. .++++|+|......+.|.+.=.+|.+.|-.+++.| +-....||+.|+.+|++|+..+
T Consensus 17 iinPig~ipvfl~lt~~--~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 17 IINPIGNIPIFISLTEY--YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HhCcchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456789999999986 79999999999999999988889999999999764 4588999999999999999764
No 14
>PRK10995 inner membrane protein; Provisional
Probab=97.02 E-value=0.066 Score=50.86 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=61.7
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhcc
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~ 230 (383)
=+.|+-+|..+.+. .++++|||.-....+.|.+.=.++.+.|..+++-| +.....||++|++.|++|++++
T Consensus 21 P~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 21 PLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred hhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45688888888886 79999999999999999888889999999999764 5789999999999999999764
No 15
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=96.98 E-value=0.0086 Score=55.63 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k 225 (383)
..+..+.+.+.|+||+.....+.+ +--.+..|...|+ +||...-.+.. ++++++++.+.++++|.|+|.|
T Consensus 109 v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~~-~l~~~p~l~~~~~~~L~~ig~~ 179 (183)
T PF03741_consen 109 VIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLAK-LLERFPYLKYLAAAILGFIGVK 179 (183)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999998888773 3468888999997 78887666655 6789999999999999999999
Q ss_pred hhhc
Q 016749 226 LFAS 229 (383)
Q Consensus 226 ~~~~ 229 (383)
++.+
T Consensus 180 li~~ 183 (183)
T PF03741_consen 180 LILE 183 (183)
T ss_pred HhhC
Confidence 9753
No 16
>PRK11111 hypothetical protein; Provisional
Probab=96.97 E-value=0.12 Score=49.15 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=61.0
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhcc
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~~~ 230 (383)
=+.|+-+|..+.+. .++++|+|......+.|.+.=.+|.+.|-++++-| +-....||+.|+.+|++|+..+
T Consensus 23 Pig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 23 PVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred cchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35688888888886 79999999999999999888889999999999764 4578999999999999999754
No 17
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.072 Score=50.54 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=66.2
Q ss_pred HHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhh
Q 016749 153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFA 228 (383)
Q Consensus 153 LE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f----~~I~~igGafLL~~a~k~~~ 228 (383)
.=.+=...|+-++..+.+. +|+++|+|+..-..+.|...=.+|.+.|.++++-| +-....||..|.+.|++|+.
T Consensus 15 f~i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~ 92 (203)
T COG2095 15 FAIIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLF 92 (203)
T ss_pred HHHhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhc
Confidence 3345568899999999996 89999999999999999988899999999999754 34788999999999999998
Q ss_pred ccC
Q 016749 229 SEE 231 (383)
Q Consensus 229 ~~~ 231 (383)
.+.
T Consensus 93 ~~~ 95 (203)
T COG2095 93 GPT 95 (203)
T ss_pred CCc
Confidence 764
No 18
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.031 Score=54.71 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k 225 (383)
..+..+++.+-|.||+....-+.++ .-++..|...|+ +||...-.+.. ++++++++.+.+.++|+|+|.|
T Consensus 137 i~~I~i~D~vFSlDSV~Aa~g~~~~--------~~im~~a~i~aI~~m~~aa~~l~~-ll~r~p~l~~~~~~iL~~IG~k 207 (254)
T COG0861 137 IIQIELADLVFSLDSVIAAVGMAGH--------PFVMVTAVIFAILVMRFAAFLLAR-LLERHPTLKYLALVILLFIGVK 207 (254)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHHHHH
Confidence 3345788999999999988887754 368999999998 88887655554 7899999999999999999999
Q ss_pred hhhcc
Q 016749 226 LFASE 230 (383)
Q Consensus 226 ~~~~~ 230 (383)
++.++
T Consensus 208 li~~~ 212 (254)
T COG0861 208 LILEG 212 (254)
T ss_pred HHHhh
Confidence 99876
No 19
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=96.43 E-value=0.032 Score=53.39 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k 225 (383)
..+..+.+.+.|+||+.....+.+ ..-.+..|...++ +||..--.+ +.++++|+++.+.+.++|.|+|.|
T Consensus 99 v~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~k 169 (215)
T TIGR03716 99 VLKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVK 169 (215)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999998887754 2357888888887 788876666 457899999999999999999999
Q ss_pred hhhcc
Q 016749 226 LFASE 230 (383)
Q Consensus 226 ~~~~~ 230 (383)
++.+.
T Consensus 170 Lil~~ 174 (215)
T TIGR03716 170 LLLET 174 (215)
T ss_pred HHHHH
Confidence 99865
No 20
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=96.23 E-value=0.98 Score=41.69 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHH-HHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHH
Q 016749 142 SKASEFFAGYIL-EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVL 215 (383)
Q Consensus 142 ~~a~eflt~~lL-E~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~f~~----I~~ig 215 (383)
|....|+...++ =.+=+-||+.+...-.++ + ..+--....|+..+...=......|. .+++.++| ++++|
T Consensus 4 ~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~-G---~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~G 79 (195)
T PRK10323 4 TLLSAFWTYTLITAMTPGPNNILALSSATSH-G---FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAG 79 (195)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445444332 233378999999887764 1 12222456677777655455555555 55655554 78999
Q ss_pred HHHHHHHHHHhhhcc
Q 016749 216 AGILLFSSFKLFASE 230 (383)
Q Consensus 216 GafLL~~a~k~~~~~ 230 (383)
++||+|.|+|+++.+
T Consensus 80 a~YLlyLg~~~~~s~ 94 (195)
T PRK10323 80 AAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999864
No 21
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.17 E-value=0.08 Score=48.98 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcccHHHHHHhcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q 016749 277 VAVIELSDIAFAVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 350 (383)
Q Consensus 277 vl~IE~~DlvFSlDSVpAafAIT~d~------fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll 350 (383)
++++.+.|++.|+||+......|++. -+...|.+.| ..+|...-.+...+=++|.+++++..+|.++|.||+.
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A-~vlr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~ 80 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGA-IVLRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLL 80 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999988888763 2556665554 4566665555555555899999999999999999987
Q ss_pred hc
Q 016749 351 DY 352 (383)
Q Consensus 351 ~~ 352 (383)
+.
T Consensus 81 ~~ 82 (176)
T TIGR03717 81 EE 82 (176)
T ss_pred cc
Confidence 54
No 22
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=96.05 E-value=0.1 Score=49.08 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=47.1
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHH-HHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIV--FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI-~gAvv--mR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~~ 232 (383)
.+|+.++....|++ .+.+.|+|-..+|= +|..+ .=.++.+.+..++ --+|++-+.|..=++.|+|.+.++|+
T Consensus 5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~i-p~~wiLGlLGliPI~lGi~~l~~~~~ 79 (191)
T PF03596_consen 5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFI-PPEWILGLLGLIPIYLGIKALFSGED 79 (191)
T ss_pred cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 58999999999997 45555677777773 33221 1112222333222 23689889999999999998876543
No 23
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=95.74 E-value=1.5 Score=39.59 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=43.3
Q ss_pred hchhHHHHHHHHhCcCCCChhhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhc
Q 016749 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS 229 (383)
Q Consensus 157 LSvDNafV~alIf~~f~lP~~~Q~rvL~--~GI~gAvvmR~ifI~~gv~Ll~~-----f~~I~~igGafLL~~a~k~~~~ 229 (383)
-+-+|+.++..-.++ -+++.+. .|...+...=+.....|...+.+ ..++.++||+||+|.|++++++
T Consensus 7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355788887776653 2334443 34444444444555555554433 3468899999999999999986
Q ss_pred cC
Q 016749 230 EE 231 (383)
Q Consensus 230 ~~ 231 (383)
..
T Consensus 81 ~~ 82 (191)
T PF01810_consen 81 KF 82 (191)
T ss_pred cc
Confidence 53
No 24
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=95.49 E-value=1.9 Score=40.69 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred HHHHHHHhchhHHHH-HHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHHHh
Q 016749 150 GYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL 226 (383)
Q Consensus 150 ~~lLE~sLSvDNafV-~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f-~-~I~~igGafLL~~a~k~ 226 (383)
..++=.++|.|+..| ++.=.+. ++. .-+..+..|+.-+ +|=.+-..+|..+-+.. + +-.+++|+.|++.|.+|
T Consensus 3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 456778999999877 4443332 222 1223455554443 23333333444443332 2 46789999999999999
Q ss_pred hhcc
Q 016749 227 FASE 230 (383)
Q Consensus 227 ~~~~ 230 (383)
+.+.
T Consensus 79 i~~~ 82 (206)
T TIGR02840 79 IYNA 82 (206)
T ss_pred HHHH
Confidence 8743
No 25
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=95.45 E-value=2.3 Score=39.89 Aligned_cols=78 Identities=26% Similarity=0.309 Sum_probs=51.8
Q ss_pred HHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHH
Q 016749 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSS 223 (383)
Q Consensus 149 t~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~----f~~I~~igGafLL~~a 223 (383)
+..++-.+=+=||+.+.+.-.++ + ..+--....|+..+...=.+...+|. .++.. |..+.++|++||+|.|
T Consensus 12 ~~~~~~~~PGP~~~~v~~~~~~~-G---~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg 87 (208)
T COG1280 12 AALVLAATPGPDNLLVLARSLSR-G---RRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG 87 (208)
T ss_pred HHHHHhcCCCccHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666778999998887663 1 22333444555545555555556653 45544 5568999999999999
Q ss_pred HHhhhcc
Q 016749 224 FKLFASE 230 (383)
Q Consensus 224 ~k~~~~~ 230 (383)
+|+++..
T Consensus 88 ~~~~ra~ 94 (208)
T COG1280 88 WKALRAG 94 (208)
T ss_pred HHHHhcc
Confidence 9999865
No 26
>COG2119 Predicted membrane protein [Function unknown]
Probab=95.28 E-value=0.78 Score=43.35 Aligned_cols=160 Identities=15% Similarity=0.216 Sum_probs=106.1
Q ss_pred hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhccCCCCC
Q 016749 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASEEDDTD 235 (383)
Q Consensus 159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f~--~I~~igGafLL~~a~k~~~~~~~e~d 235 (383)
.|.-+.++++... ++|++..+-|+.+|. .|-+.-..+|-+..+-++ +..++.|..-+..|+|++.++.++.+
T Consensus 17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~ 91 (190)
T COG2119 17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDE 91 (190)
T ss_pred ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 7888999998875 778899999999997 899999999998886666 78888888777889999987643222
Q ss_pred ccchhHHHHhhhcccccccccCCceEEeeCCccccchHHHHHHHHHHHHHHhhcccHHHHHHhc---CCchhHHHHHHHH
Q 016749 236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT---RDPFIVFSSNLFA 312 (383)
Q Consensus 236 ~~~~~i~~~~~k~~pv~~~~~g~~Ff~~~~G~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT---~d~fIV~~g~ifa 312 (383)
..+.. .+....-.-+.++..-|+=| -+=+|.++++ ++++.|+.|..+|
T Consensus 92 e~~~~------------------------~~~~~f~~tfi~~FlaE~GD-----KTQiATIaLaA~~~~~~~V~~Gt~lg 142 (190)
T COG2119 92 EAQAA------------------------SPRGVFVTTFITFFLAELGD-----KTQIATIALAADYHSPWAVFAGTTLG 142 (190)
T ss_pred ccccc------------------------ccccHHHHHHHHHHHHHhcc-----HHHHHHHHHhhcCCCceeeehhhHHH
Confidence 11100 00000011233344455555 2345555554 4568899999888
Q ss_pred HHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHhhhc
Q 016749 313 ILGLRSLFTLISEGMADL---EYLQPSIAVVLGFIGCKMILDY 352 (383)
Q Consensus 313 IlgLRslyf~l~~ll~rf---~yL~~ga~~iL~fIGvkMll~~ 352 (383)
.+.--.+..+..+++.+- ..++..++++..+.|...+.+.
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777766666666543 3455566666666776666554
No 27
>PRK10958 leucine export protein LeuE; Provisional
Probab=94.96 E-value=3.2 Score=38.84 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=48.0
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChhhHhHHHH--HHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHH
Q 016749 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS--YGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSF 224 (383)
Q Consensus 152 lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~--~GI~gAvvmR~ifI~~gv~-Ll~~f----~~I~~igGafLL~~a~ 224 (383)
++=.+=+-||+.++..-.++ -+++.+. .|+..+...=+....+|.. +++.+ ..+.++||+||+|.|+
T Consensus 19 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~ 92 (212)
T PRK10958 19 FIVLLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGV 92 (212)
T ss_pred HHhcCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33456678999999887663 2344444 4555555555555555554 44343 4578999999999999
Q ss_pred Hhhhcc
Q 016749 225 KLFASE 230 (383)
Q Consensus 225 k~~~~~ 230 (383)
|.++++
T Consensus 93 ~~~~~~ 98 (212)
T PRK10958 93 KMLRAA 98 (212)
T ss_pred HHHHhh
Confidence 999864
No 28
>PRK09304 arginine exporter protein; Provisional
Probab=94.88 E-value=3.3 Score=38.52 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLF 221 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~-Ll~~f~~----I~~igGafLL~ 221 (383)
++.|+.+-..=+-||+.+...-.++ .+.-....|+..+..+=.....+|.. +++.++| +.++|++||+|
T Consensus 9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly 82 (207)
T PRK09304 9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW 82 (207)
T ss_pred HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777788999998875542 12334555555555555555445553 5656554 78899999999
Q ss_pred HHHHhhhcc
Q 016749 222 SSFKLFASE 230 (383)
Q Consensus 222 ~a~k~~~~~ 230 (383)
.|+|+++.+
T Consensus 83 Lg~~~~rs~ 91 (207)
T PRK09304 83 YGFGAFKTA 91 (207)
T ss_pred HHHHHHHHh
Confidence 999999864
No 29
>PRK10229 threonine efflux system; Provisional
Probab=92.77 E-value=1.2 Score=41.00 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=52.5
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 016749 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS 222 (383)
Q Consensus 148 lt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~f~----~I~~igGafLL~~ 222 (383)
.++.+...+=+-||+.++..-.++ + ..+--....|+..+...=.++..+|. .+++..+ .+.++|++||+|.
T Consensus 10 ~~~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlyl 85 (206)
T PRK10229 10 MVHIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWM 85 (206)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 335566667788999999887764 1 22222345566555555555555555 4555544 5788999999999
Q ss_pred HHHhhhcc
Q 016749 223 SFKLFASE 230 (383)
Q Consensus 223 a~k~~~~~ 230 (383)
|+|.+++.
T Consensus 86 g~~~~~~~ 93 (206)
T PRK10229 86 GYQMLRGA 93 (206)
T ss_pred HHHHHHhc
Confidence 99999854
No 30
>TIGR00948 2a75 L-lysine exporter.
Probab=92.51 E-value=0.91 Score=40.91 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=45.5
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHHHHHHHHHHHHHHHHhhhcc
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFKLFASE 230 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~-Ll~~----f~~I~~igGafLL~~a~k~~~~~ 230 (383)
+-||++++..-.++ + +--....|+..+...=.++..+|.. +++. +..+.++||+||+|.|+|.+++.
T Consensus 6 GP~~~~vi~~~~~~-~-----~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 6 GAQNAFVLRQGIRR-E-----HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cchHHHHHHHHHcc-c-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888887762 1 2234455666665555555555554 5544 44689999999999999999864
No 31
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=92.18 E-value=1.2 Score=44.91 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHhcC---Cc-----hhHHHHHHHHHHHHHHHHHHH-HHHHHhhhchHHHHHHHHHHHH
Q 016749 275 LTVAVIELSDIAFAVDSIPAVFGVTR---DP-----FIVFSSNLFAILGLRSLFTLI-SEGMADLEYLQPSIAVVLGFIG 345 (383)
Q Consensus 275 ~~vl~IE~~DlvFSlDSVpAafAIT~---d~-----fIV~~g~ifaIlgLRslyf~l-~~ll~rf~yL~~ga~~iL~fIG 345 (383)
..+++.-++|.+.|+||+.....+.. -| -..+.| +++++.+|...-.+ +.++++|+++++.....|.+.|
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~G-i~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a 141 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWG-ILGALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTG 141 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35666777899999999987776642 12 245555 45666788875554 5788899999999999999999
Q ss_pred HHHhhhc
Q 016749 346 CKMILDY 352 (383)
Q Consensus 346 vkMll~~ 352 (383)
.||+.+.
T Consensus 142 ~k~~~~~ 148 (302)
T TIGR03718 142 IKMLFEG 148 (302)
T ss_pred HHHHhhc
Confidence 9999863
No 32
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=89.49 E-value=4.3 Score=37.41 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=47.8
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChhhHhHHH--HHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHH
Q 016749 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSS 223 (383)
Q Consensus 151 ~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL--~~GI~gAvvmR~ifI~~gv~-Ll~~f~----~I~~igGafLL~~a 223 (383)
.++-.+=+-||+.+...-.++ -+|+.+ ..|+..+...=.+...+|.. +++.++ .+.++|++||+|.|
T Consensus 14 ~~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg 87 (205)
T PRK10520 14 IILSLSPGSGAINTMSTSISH------GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLG 87 (205)
T ss_pred HHHhcCCchhHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455567888888776653 233433 34666655555555555554 554544 57899999999999
Q ss_pred HHhhhcc
Q 016749 224 FKLFASE 230 (383)
Q Consensus 224 ~k~~~~~ 230 (383)
+|.++.+
T Consensus 88 ~~~~~s~ 94 (205)
T PRK10520 88 IQQWRAA 94 (205)
T ss_pred HHHHhCC
Confidence 9999864
No 33
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=89.40 E-value=3.1 Score=37.44 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHHHhhhc
Q 016749 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFAS 229 (383)
Q Consensus 159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv-~Ll~~f~----~I~~igGafLL~~a~k~~~~ 229 (383)
-||+.++..-.++ ...+--....|+..+...=+....+|. .+++..+ .+.++||+||+|.|++.+++
T Consensus 4 P~~~~~~~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 4 PNFFVVMQTSLSS----GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred cchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677777766553 122222345555666555555555544 4555444 47899999999999999985
No 34
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=88.78 E-value=27 Score=34.88 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=41.4
Q ss_pred cHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhcc
Q 016749 291 SIPAVFGVTRDPFIVFSSNLFAI-LGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 353 (383)
Q Consensus 291 SVpAafAIT~d~fIV~~g~ifaI-lgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~~~ 353 (383)
+|..+++++-..-+.+++..+.+ ..+|.......+.-+..+++++..+.++..+|+-+..+.+
T Consensus 211 Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~ 274 (279)
T PRK10019 211 GATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGF 274 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555554444443 4566555555555555566778889999999998887654
No 35
>COG4280 Predicted membrane protein [Function unknown]
Probab=82.84 E-value=45 Score=32.40 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHhhhcccc
Q 016749 278 AVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLE--YLQPSIAVVLGFIGCKMILDYFGF 355 (383)
Q Consensus 278 l~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~--yL~~ga~~iL~fIGvkMll~~~~~ 355 (383)
..+|-..+++.+ +|.-+-+....=.+.|..+|-..+-.+...+-.-+.|-| .+|..+...|.-.|.-=+-+..|+
T Consensus 126 v~LeglEv~~iV---ialgaa~sqwleAi~gagfA~vlvlvl~~~lh~plarvpe~~lKfvag~lL~sfGtfWlgegvg~ 202 (236)
T COG4280 126 VALEGLEVSLIV---IALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLARVPEPHLKFVAGALLFSFGTFWLGEGVGF 202 (236)
T ss_pred HHHhhheeeeee---eeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHHhhCCchhHHHHHHHHHHHhhHHHhccccCC
Confidence 345555555543 222222333444677888888887777777777777654 689999999988888777788889
Q ss_pred ccC-hhHHHHHHHHHHHH-HHHHHhhcc
Q 016749 356 HIS-TEASLSFVATSLSA-GVLLSLMKK 381 (383)
Q Consensus 356 ~IP-~~~sl~vi~~il~~-si~~Sl~~~ 381 (383)
+.| ............++ ..++|+++.
T Consensus 203 dwPgdeLaiL~l~a~~gl~~aiisv~W~ 230 (236)
T COG4280 203 DWPGDELAILFLLAYLGLNYAIISVYWF 230 (236)
T ss_pred CCCchHHHHHHHHHHHHHhHHHheeeee
Confidence 999 66666666666666 445666543
No 36
>COG1279 Lysine efflux permease [General function prediction only]
Probab=81.53 E-value=52 Score=31.64 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH----HHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGI 218 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv----~Ll~~f~~----I~~igGaf 218 (383)
|+-+.-+=..+++.|+||+-.=.+ |++++..-+.-+ +.=.+++..|+ .++++.+| +.+.|.+|
T Consensus 9 fll~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c~-i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F 79 (202)
T COG1279 9 FLLGASLILPIGAQNAFVLNQGIR--------REYVLPIALLCA-ISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF 79 (202)
T ss_pred HHHHHHHHHhccchhHHHHHHHHh--------hccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 333444556789999999865433 355655544433 34444444443 36666665 56677889
Q ss_pred HHHHHHHhhhcc
Q 016749 219 LLFSSFKLFASE 230 (383)
Q Consensus 219 LL~~a~k~~~~~ 230 (383)
|+|.|++-+++.
T Consensus 80 Ll~yg~~a~~~a 91 (202)
T COG1279 80 LLYYGLLALKSA 91 (202)
T ss_pred HHHHHHHHHHhh
Confidence 999999998854
No 37
>PRK11469 hypothetical protein; Provisional
Probab=80.99 E-value=31 Score=32.30 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhh----Chh-------hHHHHHHHHHHHHHhchhHHHH-HHHHhCcCCCChhhHhHHHHHHHHHH
Q 016749 123 FCVSTAVAFGLGVGFIE----GAS-------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA 190 (383)
Q Consensus 123 ~wv~lal~F~~~i~~~~----g~~-------~a~eflt~~lLE~sLSvDNafV-~alIf~~f~lP~~~Q~rvL~~GI~gA 190 (383)
-|++..+++....|-.. +.+ .-..+.....+=.++|+||+-| ++.-+.. +|. -.-++..|+.-
T Consensus 70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~g--~~~--~~~~~~ig~~s- 144 (188)
T PRK11469 70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQ--VNI--IATALAIGCAT- 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--hhH--HHHHHHHHHHH-
Confidence 47777777766555321 111 1122445677788999999988 5554432 331 12334444433
Q ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhc
Q 016749 191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS 229 (383)
Q Consensus 191 vvmR~ifI~~gv~Ll~~-----f~~I~~igGafLL~~a~k~~~~ 229 (383)
+++..+|.++=.+ -.|..+++|+.|+..|+|++.+
T Consensus 145 ----~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 145 ----LIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555443221 1367889999999999999865
No 38
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=75.16 E-value=4.1 Score=38.64 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=46.8
Q ss_pred chhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH--HH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q 016749 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI--VF-RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDT 234 (383)
Q Consensus 158 SvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv--vm-R~ifI~~gv~Ll~~f~~I~~igGafLL~~a~k~~~~~~~e~ 234 (383)
.+|..+|....|++ .+ +.|+|-..+|=.... +. =.++.+.|..++ --+|++-+.|..=++.|+|-+.++|||+
T Consensus 5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~i-P~~wIlGlLGliPI~lGi~~l~~~~~~~ 80 (193)
T TIGR00779 5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLI-PEKWVLGLLGLIPIYLGIKVAIKGECDE 80 (193)
T ss_pred cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhHHhHHHHHHHHHHHhcccccc
Confidence 57999999999986 45 666665555543332 11 112223443333 2268988899999999999887765433
No 39
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.04 E-value=1e+02 Score=31.43 Aligned_cols=70 Identities=9% Similarity=0.039 Sum_probs=53.1
Q ss_pred HHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH---HHHhhh-chHHHHHHHHHHHHHHHhhh
Q 016749 280 IELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE---GMADLE-YLQPSIAVVLGFIGCKMILD 351 (383)
Q Consensus 280 IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~---ll~rf~-yL~~ga~~iL~fIGvkMll~ 351 (383)
-+..|+. .+++.++++++-...+.+++....+...|-.....++ .-.|-+ .++..++.++.+.|..++..
T Consensus 226 al~~gl~--~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~gli~l~~g~~~l~~ 299 (303)
T COG2215 226 ALSLGLY--TLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLGGLIGLYFGLHLLLG 299 (303)
T ss_pred HHHhchH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 4789999999999999999999888888888777663 344555 67777788888888877764
No 40
>PRK10621 hypothetical protein; Provisional
Probab=73.39 E-value=90 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=25.8
Q ss_pred hchHHHHHHHHHHHHHHHhhhccccccChhH
Q 016749 331 EYLQPSIAVVLGFIGCKMILDYFGFHISTEA 361 (383)
Q Consensus 331 ~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~ 361 (383)
..++.....++..+|+||+.+.++.|||.+.
T Consensus 233 ~~lr~~~~~ll~~~~i~~~~~~~~~~~~~~~ 263 (266)
T PRK10621 233 KLIRPMIVIVSAVMSAKLLYDSHGQEILHWL 263 (266)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3688899999999999999988877888753
No 41
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=69.94 E-value=21 Score=34.05 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA---IVFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gA---vvmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a 223 (383)
+.+..++=.+=++|-+++.++.|++++. +.|++=.+.|=... +++-.++.+++...+ .=+|+.-..|..=++.|
T Consensus 5 ~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fv-p~e~I~glLGLIPi~LG 81 (205)
T COG4300 5 VVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAFVLNFV-PEEWILGLLGLIPIYLG 81 (205)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhC-cHHHHHHHHhHHHHHHh
Confidence 4455566677889999999999997543 44444344442222 122222233333333 23789988999999999
Q ss_pred HHhhhccCC
Q 016749 224 FKLFASEED 232 (383)
Q Consensus 224 ~k~~~~~~~ 232 (383)
+|.+..+|+
T Consensus 82 ik~l~~~d~ 90 (205)
T COG4300 82 IKVLILGDD 90 (205)
T ss_pred hHHhhcccC
Confidence 999875543
No 42
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=67.45 E-value=1.1e+02 Score=28.57 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=46.2
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 016749 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (383)
Q Consensus 151 ~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~--I~~igGafLL~~a~ 224 (383)
.+.-..-+.-+....+.+.+. .|+++|.++.-+--.+.-+..++...++..+.+.+.| ..++.++..+..++
T Consensus 93 ~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 93 FLLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 344444467777788888886 5777777776554444446667778888877766554 55655555554444
No 43
>COG1971 Predicted membrane protein [Function unknown]
Probab=62.02 E-value=1.5e+02 Score=28.31 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHH
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLF 221 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f-----~~I~~igGafLL~ 221 (383)
|....++-.+.|+||+-|=+-..- ++-.-+.-+...|+.- .++..+|..+=+++ .+.-++||+.|+.
T Consensus 107 ~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~T-----~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~ 178 (190)
T COG1971 107 FKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLIT-----LILSALGAIIGRKLGKFLGKYAEILGGIILIG 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666788889999999888665553 3545555565555432 33455555443332 3678899999999
Q ss_pred HHHHhhhcc
Q 016749 222 SSFKLFASE 230 (383)
Q Consensus 222 ~a~k~~~~~ 230 (383)
.|.|.+.+.
T Consensus 179 ~G~~iL~~~ 187 (190)
T COG1971 179 IGVKILLEH 187 (190)
T ss_pred HHHHHHHHh
Confidence 999988653
No 44
>PF14036 YlaH: YlaH-like protein
Probab=58.70 E-value=1e+02 Score=25.42 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHH
Q 016749 324 SEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSA 372 (383)
Q Consensus 324 ~~ll~rf~yL~~ga~~iL~fIGvkMll~~~~~~IP~~~sl~vi~~il~~ 372 (383)
.+.-+|.|.+|....+++..+|.-++.- +++..|..-++.+.+.+++.
T Consensus 25 lgFA~kLpilK~vivYi~L~iG~~vLtf-l~~~lPi~e~L~VAaliL~i 72 (77)
T PF14036_consen 25 LGFARKLPILKNVIVYILLAIGCFVLTF-LAVFLPIIEGLVVAALILGI 72 (77)
T ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence 3566699999999999999999887764 34568888888777766653
No 45
>PRK07668 hypothetical protein; Validated
Probab=58.28 E-value=1.4e+02 Score=29.69 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhc-c-----cHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH--HHHHHH
Q 016749 274 LLTVAVIELSDIAFAV-D-----SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAV--VLGFIG 345 (383)
Q Consensus 274 ~~~vl~IE~~DlvFSl-D-----SVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~--iL~fIG 345 (383)
...+.+..+.|..|+= | |+.-..+.. .+++.+.++.+..+|-.+|--. .-++-.-+.+.... ....++
T Consensus 83 i~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~---~~~~l~i~~~~~~~r~~~fk~~-~~~~~~i~~~~~~~~p~~l~i~ 158 (254)
T PRK07668 83 IGILSFWIIANILFGNPNHPLTYSLIQLIGYP---ISLILTIIGLIFLLRMASFKSK-LTEKWFLIIYLVILIPMLLIVA 158 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeehHHhhHH---HHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666552 1 122222322 5677778888888888877333 22222222222222 244445
Q ss_pred HHHhhhccc---cccChhHHHHHHHHHHHHHHHHHhhc
Q 016749 346 CKMILDYFG---FHISTEASLSFVATSLSAGVLLSLMK 380 (383)
Q Consensus 346 vkMll~~~~---~~IP~~~sl~vi~~il~~si~~Sl~~ 380 (383)
+.++...++ +++..+.|+.++.+++.+.++.+++-
T Consensus 159 i~~l~k~yp~~~~~ls~~qs~il~~~~~i~~~~~~~~~ 196 (254)
T PRK07668 159 IMFLNKWYGTPMLQFTQMQSYILAGLIFLITVIINIYF 196 (254)
T ss_pred HHHHHhhcCceEEEecchHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 68899999999988888888877653
No 46
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=56.91 E-value=35 Score=27.70 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=39.0
Q ss_pred ChhhHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhhhcc
Q 016749 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATL--QRFEAVNLVLAGILLFSSFKLFASE 230 (383)
Q Consensus 175 P~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll--~~f~~I~~igGafLL~~a~k~~~~~ 230 (383)
.+++++|...|.+.. .+|+...+++..+. ....|++..+++.|=|.++=...+.
T Consensus 10 ~~d~~~R~r~Y~i~M--~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAVviAN~~ 65 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMM--GIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAVVIANAR 65 (73)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhheeeccCC
Confidence 356677788887765 47888888777766 3445677788889999998665543
No 47
>TIGR00901 2A0125 AmpG-related permease.
Probab=55.60 E-value=2e+02 Score=27.63 Aligned_cols=61 Identities=7% Similarity=-0.192 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016749 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~ 209 (383)
+....++...-+..+..+.+++.+. .|+++|.++.-+-..+.-+.-++...++..+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334466666777788888888887 588888887766544444555555566666655544
No 48
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=50.53 E-value=94 Score=29.36 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHhhcccHHHHHHhcC-C---ch--hHHHHHHHHHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHHhhh
Q 016749 281 ELSDIAFAVDSIPAVFGVTR-D---PF--IVFSSNLFAILGLRSLFTLISEGMADLE---YLQPSIAVVLGFIGCKMILD 351 (383)
Q Consensus 281 E~~DlvFSlDSVpAafAIT~-d---~f--IV~~g~ifaIlgLRslyf~l~~ll~rf~---yL~~ga~~iL~fIGvkMll~ 351 (383)
.+.=+.-|+|+--+.++..- + ++ .+..|.+.+++-. +...+.+.+.++- +=++.++.+|.++|.+|+.+
T Consensus 4 ~llaials~Daf~vgi~~G~~~~~~~~~~~l~ig~~~~~~~~--lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~ 81 (206)
T TIGR02840 4 LLLAFAVSLDSFGVGIAYGLRKIKIPFLSNLIIAVISGLFIF--ISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYN 81 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Confidence 34456778998777665532 2 12 2333333333322 2333445555443 45789999999999999997
Q ss_pred cc
Q 016749 352 YF 353 (383)
Q Consensus 352 ~~ 353 (383)
.+
T Consensus 82 ~~ 83 (206)
T TIGR02840 82 AF 83 (206)
T ss_pred HH
Confidence 64
No 49
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=46.41 E-value=84 Score=31.71 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHhhhcc
Q 016749 277 VAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL---EYLQPSIAVVLGFIGCKMILDYF 353 (383)
Q Consensus 277 vl~IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf---~yL~~ga~~iL~fIGvkMll~~~ 353 (383)
++.=|+=|=.|= |.|..|+-+.-.+|+.|..-|...|-.++..+...-..+ .|=.|.+..+..+-|.||+-+.+
T Consensus 76 I~vsEiGDKTFf---iAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~ 152 (294)
T KOG2881|consen 76 IFVSEIGDKTFF---IAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGW 152 (294)
T ss_pred eeeeeccchHHH---HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455666663 456677777788999999988888888887777554111 13346777778888999999875
No 50
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.52 E-value=2.2e+02 Score=26.53 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHhhcccHHHHHHh-----------------cCCchhHHHHHHHHHHHHHHHHHHHHH---HHHhhhchHH-------H
Q 016749 284 DIAFAVDSIPAVFGV-----------------TRDPFIVFSSNLFAILGLRSLFTLISE---GMADLEYLQP-------S 336 (383)
Q Consensus 284 DlvFSlDSVpAafAI-----------------T~d~fIV~~g~ifaIlgLRslyf~l~~---ll~rf~yL~~-------g 336 (383)
...+.+|+....+++ +.+..-++...+++-+++..++..+.+ --+|-.+.++ .
T Consensus 78 ~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~ 157 (206)
T PF06570_consen 78 PWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAM 157 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHH
Q 016749 337 IAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLL 376 (383)
Q Consensus 337 a~~iL~fIGvkMll~~~~~~IP~~~sl~vi~~il~~si~~ 376 (383)
+.++++++...++-....+.+|.|+.+.+.++.+++..+.
T Consensus 158 ~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 158 VLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYL 197 (206)
T ss_pred HHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHH
No 51
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=42.37 E-value=1.2e+02 Score=30.71 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=45.1
Q ss_pred hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhcc
Q 016749 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRF--EAVNLVLAGILLFSSFKLFASE 230 (383)
Q Consensus 159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv-vmR~ifI~~gv~Ll~~f--~~I~~igGafLL~~a~k~~~~~ 230 (383)
.|--|++|.+.+. +|-|+-.+-|-.+|+ +|-++-..+|=+.-+-+ .|..|+.|+..+.-|+||+++.
T Consensus 82 GDKTFfiAAlmAm-----r~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg 151 (294)
T KOG2881|consen 82 GDKTFFIAALMAM-----RYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEG 151 (294)
T ss_pred cchHHHHHHHHHh-----hccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777663 556677788999997 66666666554432222 3667788887777888888754
No 52
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=39.62 E-value=4.9e+02 Score=30.43 Aligned_cols=103 Identities=10% Similarity=0.003 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHh-CcCCCChhhHhHHHHHHHHH-----------
Q 016749 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIF-KYFKVPVMYQNRVLSYGIAG----------- 189 (383)
Q Consensus 122 ~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf-~~f~lP~~~Q~rvL~~GI~g----------- 189 (383)
++-+.++++++..++.+.|.....---..=++=..-++||+|+++--- +.-.=.+-.+|-+...+.+|
T Consensus 97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t~~~~~v~eRIa~~l~~vGpSItltslte~ 176 (886)
T TIGR00920 97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTITLDTVVET 176 (886)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhccCCCCCHHHHHHHHHHHhccceeHHHHHHH
Confidence 566777888888777777766553322233444567999999996542 11000111233333333222
Q ss_pred ------HH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 016749 190 ------AI----VFRLSLILLGTATLQRFEAVNLVLAGILLFSSF 224 (383)
Q Consensus 190 ------Av----vmR~ifI~~gv~Ll~~f~~I~~igGafLL~~a~ 224 (383)
++ -.|..-.+.+.+++-.|-.-+-+|++.|-+.+-
T Consensus 177 l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~~ 221 (886)
T TIGR00920 177 LVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVLE 221 (886)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234444445555554555556677887776664
No 53
>COG2119 Predicted membrane protein [Function unknown]
Probab=38.04 E-value=2.6e+02 Score=26.80 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=55.8
Q ss_pred HHHHHHHhhcccHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-h--chHHHHHHHHHHHHHHHhhhccc
Q 016749 280 IELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL-E--YLQPSIAVVLGFIGCKMILDYFG 354 (383)
Q Consensus 280 IE~~DlvFSlDSVpAafAIT~d~fIV~~g~ifaIlgLRslyf~l~~ll~rf-~--yL~~ga~~iL~fIGvkMll~~~~ 354 (383)
=|+=|=.|= |.+..|.=..++-|++|...|...|-.++..+.+..-.+ | |+.+.....-...|+||+.++.+
T Consensus 14 aEiGDKT~l---ia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~ 88 (190)
T COG2119 14 AEIGDKTQL---IAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKE 88 (190)
T ss_pred HHhccHHHH---HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccccc
Confidence 345555542 233455556788999999999999999999999887777 5 78888888888889999998763
No 54
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=37.54 E-value=6.6e+02 Score=28.54 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=42.3
Q ss_pred cHHHHHHhcCCchhHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q 016749 291 SIPAVFGVTRDPFIVFSS-NLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD 351 (383)
Q Consensus 291 SVpAafAIT~d~fIV~~g-~ifaIlgLRslyf~l~~ll~rf~yL~~ga~~iL~fIGvkMll~ 351 (383)
++-|++|++-...+-+.+ +....+++=.+..+++++.+++.-+-.++.++++.+-+.+-.+
T Consensus 196 ~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~ 257 (764)
T TIGR02865 196 GAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQ 257 (764)
T ss_pred hHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhc
Confidence 344555555444433322 2445677777889999999999999999999999877666443
No 55
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=37.13 E-value=2e+02 Score=30.63 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=15.3
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHH
Q 016749 107 QIEGRESYTSSVKTVAFCVSTAVAFGLG 134 (383)
Q Consensus 107 ~~~~~~~~k~a~~~s~~wv~lal~F~~~ 134 (383)
|.+...+.|+-.....+-..=+++|+++
T Consensus 44 H~r~~~~~~riM~~VilALlPa~l~~iy 71 (413)
T TIGR01937 44 HVRDAVDSKRWMILVVIALFPAMFFGMY 71 (413)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666655555555666543
No 56
>PRK14013 hypothetical protein; Provisional
Probab=36.73 E-value=1.6e+02 Score=30.58 Aligned_cols=77 Identities=19% Similarity=0.193 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHH-HHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH
Q 016749 145 SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLILLGT-ATLQRFEAVNLVLAGILLFS 222 (383)
Q Consensus 145 ~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI-~gAvvmR~ifI~~gv-~Ll~~f~~I~~igGafLL~~ 222 (383)
..|+..=+++.+-|+|++...-.+.+ +.-+...|. +|++.+|..-+.+.- ..+++++++.+-....+.+.
T Consensus 223 ~~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~l 294 (338)
T PRK14013 223 GGFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGAL 294 (338)
T ss_pred HHHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHH
Confidence 34666678899999999875444433 335555665 555699998443333 25779998888878889999
Q ss_pred HHHhhhc
Q 016749 223 SFKLFAS 229 (383)
Q Consensus 223 a~k~~~~ 229 (383)
|+||+.+
T Consensus 295 gvkmll~ 301 (338)
T PRK14013 295 AVIMLLS 301 (338)
T ss_pred HHHHHHh
Confidence 9999985
No 57
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=33.74 E-value=6.3e+02 Score=27.16 Aligned_cols=93 Identities=12% Similarity=-0.038 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHH
Q 016749 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFR 194 (383)
Q Consensus 115 k~a~~~s~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR 194 (383)
|+-+..+-++-++..+.-.++.+......+.-+....++-..-+..|--..+++=+- +|+++-.++.-+.-..--+.|
T Consensus 75 rrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l--V~~~~L~~A~al~s~~~niar 152 (524)
T PF05977_consen 75 RRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL--VPKEDLPAANALNSISFNIAR 152 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHHHHH
Confidence 445555544443332222222233334455445555666666777777777777765 888888888766655555899
Q ss_pred HHHHHHHHHHHHhhh
Q 016749 195 LSLILLGTATLQRFE 209 (383)
Q Consensus 195 ~ifI~~gv~Ll~~f~ 209 (383)
++-+.+|..++..+.
T Consensus 153 ~iGPalgG~Lva~~G 167 (524)
T PF05977_consen 153 IIGPALGGILVAFFG 167 (524)
T ss_pred hccchHHHHHHHHHH
Confidence 999999988887643
No 58
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=33.04 E-value=6.2e+02 Score=26.85 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=41.2
Q ss_pred HhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Q 016749 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA-IVFRLSLILLGTATLQR---FEAVNLVLAGILLF 221 (383)
Q Consensus 156 sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gA-vvmR~ifI~~gv~Ll~~---f~~I~~igGafLL~ 221 (383)
..++|.-.+..+..+. -|+++|.+....=..|. +.--+.+++.|. +.+. ++++.|++|+.-+.
T Consensus 141 ~~g~~~pa~~~i~~~W--~P~~Ers~~~ail~~g~q~g~v~~mp~sg~-lc~s~~GW~sifY~~g~~g~i 207 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKW--APPNERSTFIAILTAGSQLGTIITMPVSGL-LCESSLGWPSIFYVFGIVGLI 207 (466)
T ss_pred HHhHHHhhhhceeeeE--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HhccCCCCchHHHHHHHHHHH
Confidence 4567777777888887 68888887665554454 344444555544 5544 67899998875433
No 59
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=32.20 E-value=1e+02 Score=28.41 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhccccccChhHHHHHHHHHHHHHHH
Q 016749 341 LGFIGCKMILDYFGFHISTEASLSFVATSLSAGVL 375 (383)
Q Consensus 341 L~fIGvkMll~~~~~~IP~~~sl~vi~~il~~si~ 375 (383)
..|++.-.+.+.-++++|.|+.+++.++++++|++
T Consensus 78 ~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gll 112 (153)
T PF11947_consen 78 AVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLL 112 (153)
T ss_pred HHHHHHHHHHhccccccCchHHHHHHHHHHHHHHH
Confidence 34444445555555899999999999888887754
No 60
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=32.14 E-value=2.7e+02 Score=31.20 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChhhHhH-HHHH------------------HHHH--HH-HHHHHHHHHHHHHHHhhh
Q 016749 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNR-VLSY------------------GIAG--AI-VFRLSLILLGTATLQRFE 209 (383)
Q Consensus 152 lLE~sLSvDNafV~alIf~~f~lP~~~Q~r-vL~~------------------GI~g--Av-vmR~ifI~~gv~Ll~~f~ 209 (383)
++=...++||+|++.-..++-+....-++| ...+ |+.. .+ .+|..-+..+++++=.|-
T Consensus 286 FLvlgIGvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i 365 (798)
T PF02460_consen 286 FLVLGIGVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFI 365 (798)
T ss_pred HHHHHHHHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 445567999999999888763221111222 1111 1111 01 344444444444443444
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 016749 210 AVNLVLAGILLFSSFKLFAS 229 (383)
Q Consensus 210 ~I~~igGafLL~~a~k~~~~ 229 (383)
+...+|+++|.+-+-+.-..
T Consensus 366 ~~it~f~a~l~l~~~re~~~ 385 (798)
T PF02460_consen 366 YQITFFPAILVLDGRREAAG 385 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56678888888888766543
No 61
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=30.13 E-value=2.8e+02 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=14.7
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHH
Q 016749 108 IEGRESYTSSVKTVAFCVSTAVAFGLG 134 (383)
Q Consensus 108 ~~~~~~~k~a~~~s~~wv~lal~F~~~ 134 (383)
.+...+.|+-..+...-..=+++++++
T Consensus 47 ~r~~~~~~riM~~ViiALlPa~l~~iy 73 (405)
T PRK05349 47 VRDAIDLKRIMITVWLALFPAMFFGMY 73 (405)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333555566666655555555666644
No 62
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=29.85 E-value=5.8e+02 Score=25.53 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHHHHHHhhcccHHHHHHhcCC-chh-HHHHHHHHHHHHHHHHHHH----HHHHH
Q 016749 267 MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRD-PFI-VFSSNLFAILGLRSLFTLI----SEGMA 328 (383)
Q Consensus 267 ~~~aTpl~~~vl~IE~~DlvFSlDSVpAafAIT~d-~fI-V~~g~ifaIlgLRslyf~l----~~ll~ 328 (383)
++...+.+.+=..=-.+|+..|+=...++.+.--+ +++ -+.|.+++++.++.....+ ..+|+
T Consensus 142 kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d 209 (304)
T COG0053 142 KKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMD 209 (304)
T ss_pred HHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334555666666677998888888887766555 333 3566666666666554443 45555
No 63
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=29.76 E-value=5.1e+02 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccC
Q 016749 210 AVNLVLAGILLFSSFKLFASEE 231 (383)
Q Consensus 210 ~I~~igGafLL~~a~k~~~~~~ 231 (383)
+++.+.+..++|+++.++..++
T Consensus 268 ~~~a~aaG~~lyv~~~ell~~~ 289 (317)
T PF02535_consen 268 ILLAFAAGTFLYVAFVELLPEE 289 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777899998887653
No 64
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=28.95 E-value=6.3e+02 Score=25.68 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=23.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016749 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (383)
Q Consensus 110 ~~~~~k~a~~~s~~wv~lal~F~~~i~~~~g 140 (383)
.+.+.|++....+....+|++.+.++.+..|
T Consensus 90 G~is~~~al~~~~~l~~la~~lg~~L~~~~~ 120 (331)
T PRK12392 90 GRLSEKEALWNSIIVLLLAIGLGVWLGLHIG 120 (331)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567789999999888888888876654333
No 65
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=28.91 E-value=5.1e+02 Score=24.58 Aligned_cols=58 Identities=16% Similarity=-0.044 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh--HHHHHHHHH
Q 016749 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFE--AVNLVLAGI 218 (383)
Q Consensus 159 vDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAv--vmR~ifI~~gv~Ll~~f~--~I~~igGaf 218 (383)
..+....+++.+. .|++.|.++...|+..+. +.-.+-..++..+.+.+. +..++.+..
T Consensus 103 ~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 103 TANPQLFALAREH--ADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred hhHHHHHHHHHHH--hhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 3344444444443 355555555545544321 344556666666766543 455665554
No 66
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=27.48 E-value=3e+02 Score=22.19 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHHhhh---chHHHHHHHH
Q 016749 275 LTVAVIELSDIAFAVDSIPAVFGVTR--DPFIVFSSNLFAILGLRSLFTLISEGMADLE---YLQPSIAVVL 341 (383)
Q Consensus 275 ~~vl~IE~~DlvFSlDSVpAafAIT~--d~fIV~~g~ifaIlgLRslyf~l~~ll~rf~---yL~~ga~~iL 341 (383)
.++..=|+=|=.+= +..++|... +|+.|+.|...|...+-.+.-.+.+.+.+.- ++++.+..+.
T Consensus 6 ~~iflaE~GDKTQl---~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lF 74 (78)
T PF01169_consen 6 LLIFLAELGDKTQL---ATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALF 74 (78)
T ss_pred HHHHHHHhCcHHHH---HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 34445566665542 123344433 8999999999999999988888887774432 4444444433
No 67
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=27.39 E-value=4.1e+02 Score=23.03 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=34.7
Q ss_pred cHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 016749 291 SIPAVFGVTRDPF----IVFSSNLFAILGLRSLFTLISEGMADLEYLQP 335 (383)
Q Consensus 291 SVpAafAIT~d~f----IV~~g~ifaIlgLRslyf~l~~ll~rf~yL~~ 335 (383)
+||.+.+.--|++ +-+.||++.++.+-.+...+.+.++|.++++.
T Consensus 5 aIP~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~ 53 (121)
T PF06695_consen 5 AIPLGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKK 53 (121)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677777767765 45789999888888888888888888777775
No 68
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=27.31 E-value=5.1e+02 Score=24.09 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=37.0
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 016749 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (383)
Q Consensus 148 lt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~ 210 (383)
..-.+.-..-+..+....+++.+. .|+++|.|+.-+--.+.-+..++-..++..+.+.+.|
T Consensus 97 ~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 97 VLAGILAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333444455566666777777776 6878777665443334445556667777777765544
No 69
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.52 E-value=3e+02 Score=20.87 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=29.4
Q ss_pred hchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHH
Q 016749 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSS 223 (383)
Q Consensus 157 LSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f-----~~I~~igGafLL~~a 223 (383)
||+|+..|=...--. +++ +++.+...+..+ ++-.+++.+|..+=+++ ++..+++|+.|+..|
T Consensus 1 lSiDaf~vg~~~g~~-~~~---~~~~~~~~~~ig-~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 1 LSIDAFAVGISYGLR-GIS---RRIILLIALIIG-IFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIILIFIG 67 (67)
T ss_pred CcHHHHHHHHHHHHH-cCC---hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 688887663322211 233 222222222222 23444554444433221 356788888887654
No 70
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=24.68 E-value=8.7e+02 Score=26.05 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHH
Q 016749 121 VAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL 200 (383)
Q Consensus 121 s~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~ 200 (383)
+..=+++++..++.+|...|++.+...... +.|+..+|....=|...-+++ +.|.+.+.++=++..++
T Consensus 342 ~alra~la~~~~~l~Wi~t~W~~G~~~~~~-----------~~v~~~lfa~~~~P~~~~~~~-~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 342 NALRAFLAILIAGLFWIATGWPSGATAVMM-----------AAVVSSLFATLDNPAPALRLF-LIGALLGAVLAFLYLFF 409 (650)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHHHHcCCcChHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 444566677777778877777765433322 345555666544344444444 44444444444444444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 016749 201 GTATLQRFEAVNLVLAGILLFSSFKLF 227 (383)
Q Consensus 201 gv~Ll~~f~~I~~igGafLL~~a~k~~ 227 (383)
.---++.|+...++.+.+++..++.+-
T Consensus 410 vlP~~~~f~~L~l~l~~~l~~~~~~~~ 436 (650)
T PF04632_consen 410 VLPHLDGFPLLALVLAPFLFLGGLLMA 436 (650)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHc
Confidence 333444566677777777777766543
No 71
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=24.66 E-value=4.8e+02 Score=28.46 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=16.8
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHH
Q 016749 105 ERQIEGRESYTSSVKTVAFCVSTAVAFGLG 134 (383)
Q Consensus 105 ~~~~~~~~~~k~a~~~s~~wv~lal~F~~~ 134 (383)
..|.+...+.|+-.....+-..=|++++++
T Consensus 42 ~PHird~~~vkr~M~~VvlALlPail~~i~ 71 (503)
T PRK01024 42 PPFIRDAVDVKRWMMLVVIALFPAIFVAIW 71 (503)
T ss_pred CCcccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666655555555666644
No 72
>PRK10489 enterobactin exporter EntS; Provisional
Probab=24.00 E-value=7.1e+02 Score=24.57 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHH
Q 016749 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 201 (383)
Q Consensus 122 ~~wv~lal~F~~~i~~~~g~~~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~g 201 (383)
..+++..+.....+.....+..+..+....+.=...+.-+....+.+-+. .|++.|-++.-+-.....+...+-..++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQ--TPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHhhhHhHHHHHH
Q ss_pred HHHHHhhhH---------HHHHHHHHHHH--HHHHhhhccCCCCCccch
Q 016749 202 TATLQRFEA---------VNLVLAGILLF--SSFKLFASEEDDTDLSDN 239 (383)
Q Consensus 202 v~Ll~~f~~---------I~~igGafLL~--~a~k~~~~~~~e~d~~~~ 239 (383)
..+.+.+.+ +..+.|+...+ ...|....+|-|+|.+|+
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASDS 417 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCC
No 73
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=23.33 E-value=2.2e+02 Score=27.04 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=31.4
Q ss_pred CccCCCCccccccCCCCCCCCCCCCCCCCccCcchhhhccchhhhHHHHHHHHHHHHHHHHHHHH
Q 016749 71 EQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (383)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~a~~~s~~wv~lal~F~~~i 135 (383)
+|-+-..+-.+.+.+.|++.+++.+..+.+-+.. .++.+.-..+...+.|++++++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~~~~~~~~~~~~~Gili~~~v 66 (200)
T PF05473_consen 6 QQAPLKPTKSSLSFTVQEITEDEPNLDSATSTRR----EKRKSPCACFLFIICGILIGILITIFV 66 (200)
T ss_pred ccCccccccccccccccCCCCCCccccccccccc----cccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4444456666666666776666655554332222 112121122455667777777666544
No 74
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=22.66 E-value=5.1e+02 Score=28.36 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhchhHHHHH---HHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 016749 147 FFAGYILEQSLSVDNLFVF---VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (383)
Q Consensus 147 flt~~lLE~sLSvDNafV~---alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~~ 210 (383)
+....++|..+++-.+..+ ..+.+. +|+++|.|+--+--.+..+..++-..++.. +..+.|
T Consensus 115 l~~L~i~R~llGvaEA~~~A~~syI~~W--fP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gW 178 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARIAYSSYIFSL--VPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGW 178 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 4445666666666555544 344554 799999998777666667788877777777 446666
No 75
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=21.86 E-value=7.7e+02 Score=24.25 Aligned_cols=24 Identities=13% Similarity=-0.172 Sum_probs=19.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Q 016749 110 GRESYTSSVKTVAFCVSTAVAFGL 133 (383)
Q Consensus 110 ~~~~~k~a~~~s~~wv~lal~F~~ 133 (383)
.+.+.|++...+..+..++++.+.
T Consensus 86 G~is~~~a~~~~~~l~~~g~~l~~ 109 (296)
T PRK04375 86 GRISPREALIFGLVLGVLGFLLLG 109 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477889999998888888777753
No 76
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=21.49 E-value=5e+02 Score=23.36 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChhhHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016749 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQN-----RVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (383)
Q Consensus 143 ~a~eflt~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~-----rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~ 209 (383)
.+.||++|+++|+.+... .=.+-+.|-..|. -.+.||+++-+..|.+-+.+-..+ ++.+
T Consensus 70 t~lEyi~g~~le~~~~~~-------~WDYS~~~~n~~G~Icl~~s~~wg~l~~~~~~~i~P~~~~~~-~~i~ 133 (157)
T PF06541_consen 70 TALEYITGWILEKLFGAR-------WWDYSDLPFNIQGRICLPFSLFWGLLGLLFVKVIHPLLFKLL-SKIP 133 (157)
T ss_pred HHHHHHHHHHHHHHHCCc-------cCcCCCCcCCcCCEehHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 367999999999977542 2233334444443 378999999999999999888654 4543
No 77
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=21.01 E-value=4e+02 Score=20.64 Aligned_cols=71 Identities=21% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHH
Q 016749 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILLFS 222 (383)
Q Consensus 150 ~~lLE~sLSvDNafV~alIf~~f~lP~~~Q~rvL~~GI~gAvvmR~ifI~~gv~Ll~~f~--~I~~igGafLL~~ 222 (383)
..+.-...+.-+....+.+.+. .|+++|.++.-+--.+.-+...+...++..+.+... +..++.++..+..
T Consensus 58 ~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 58 RFLQGFGAAFALVAGAALIADI--YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 3444444555555666666665 688877777555444445666777777777765543 4455555444433
Done!